#### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaaggaAACTGTGTGGTGCTGAAAAGATCTCGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaaggaAACTGTGTGGTGCTGAAAAGATCTCGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTcGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTCGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATC-AGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTCGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTCGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTCGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG cttgaggggcacttaaaacatcattctcttttctctttttgctccacaagGAAACTGTGTGGTGCTGAAAAGATCTCGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgttggactatgttaggtgcttaatgtggcaaatggcgaagcactgtaaac #### 1700123I01Rik_ID1493_5 --> 2 - 0 Original Alignment ggAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtattcctgtcttgccccatcaaccttacatgctcctattttgcaggtAAACCTGCTGATGACATTCCCACTTGAGTTGgtgagttttaacacctctttttatgttttcatagcaattaaaataagata Alignment from CESAR ggAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtattcctgtcttgccccatcaaccttacatgctcctattttgcaggtAAACCTGCTGATGACATTCCCACTTGAGTTGgtgagttttaacacctctttttatgttttcatagcaattaaaataagata Alignment from Spaln_aa2Genome GGAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtattcctgtcttgccccatcaaccttacatgctcctattttgcagGTAAACCTGCTGATGACATTcCCACTTGAGTTGgtgagttttaacacctctttttatgttttcatagcaattaaaataagata Alignment from Spaln_nt2Genome GGAAACCAGCAGATGATATTCCT-CTTGAGTTG acaggtattcctgtcttgccccatcaaccttacatgctcctattttgcagGTAAACCTGCTGATGACATTCCCACTTGAGTTGgtgagttttaacacctctttttatgttttcatagcaattaaaataagata Alignment from Pairagon GGAAACCAGCAGATGATATTCCT-CTTGAGTTG acaggtattcctgtcttgccccatcaaccttacatgctcctattttgcagGTAAACCTGCTGATGACATTCCCACTTGAGTTGgtgagttttaacacctctttttatgttttcatagcaattaaaataagata Alignment from Exonerate_protein2genome GGAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtattcctgtcttgccccatcaaccttacatgctcctattttgcagGTAAACCTGCTGATGACATTCCCACTTGAGTTGgtgagttttaacacctctttttatgttttcatagcaattaaaataagata Alignment from Exonerate_coding2genome acaggtattcctgtcttgccccatcaaccttacatgctcctattttgcaggtaaacctgctgatgacattcccacttgagttggtgagttttaacacctctttttatgttttcatagcaattaaaataagata Alignment from GeneWise acaggtattcctgtcttgccccatcaaccttacatgctcctattttgcaggtaaacctgctgatgacattcccacttgagttggtgagttttaacacctctttttatgttttcatagcaattaaaataagata #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg attataactggctgagtgagcctttatcaactaatgtaccttactttcagg---TGCTCCCGTGCAAACATCACACTATCTGGGAAGAAGCGTCAGGAGACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCTATGAAAggtatgctgaaagtagcactggattttcccaacttgcttgtatgactcatt Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg attataactggctgagtgagcctttatcaactaatgtaccttactttcaggTGC---TCCCGTGCAAACATCACACTATCTGGGAAGAAGCGTCAGGAGACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCTATGAAAggtatgctgaaagtagcactggattttcccaacttgcttgtatgactctca Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataactggctgagtgagcctttatcaactaatgtaccttactttcagGTGCTCC---CGTGCAAACATCACACTATCTGGGAAGAAGCGTcAGGAGACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtatgctgaaagtagcactggattttcccaacttgcttgtatgactcatt Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCG-CAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataactggctgagtgagcctttatcaactaatgtaccttactttcagGT---GCTCCCGTGCAAACATCACACTATCTGGGAAGAAGCGTCAGGAGACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtatgctgaaagtagcactggattttcccaacttgcttgtatgactcatt Alignment from Pairagon GTCCAGTGCT--CGTGCCAACATCACGCTGTCTGGGAAGAAGCG-CAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataactggctgagtgagcctttatcaactaatgtaccttactttcag-----GTGCTCCCGTGCAAACATCACACTATCTGGGAAGAAGCGTCAGGAGACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtatgctgaaagtagcactggattttcccaacttgcttgtatgactcatt Alignment from Exonerate_protein2genome TGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataactggctgagtgagcctttatcaactaatgtaccttactttcaggtgCTCCCGTGCAAACATCACACTATCTGGGAAGAAGCGTCAGGAGACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtatgctgaaagtagcactggattttcccaacttgcttgtatgactcatt Alignment from Exonerate_coding2genome TGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataactggctgagtgagcctttatcaactaatgtaccttactttcaggtgCTCCCGTGCAAACATCACACTATCTGGGAAGAAGCGTCAGGAGACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtatgctgaaagtagcactggattttcccaacttgcttgtatgactcatt Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG attataactggctgagtgagcctttatcaactaatgtaccttactttcagGTGCTCC---CGTGCAAACATCACACTATCTGGGAAGAAGCGTCAGGAGACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCTATGAAAGgtatgctgaaagtagcactggattttcccaacttgcttgtatgactcatt #### 2010012O05Rik_ID10004_3 --> 0 - 2 Original Alignment AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACca agagctcacatcaagctctaggagtatgtctgctctccctttcctttcagAGCTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACcagtaaagatgcctggccaagtgggcagtggatgaaagtagaggaggcaata Alignment from CESAR AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACca agagctcacatcaagctctaggagtatgtctgctctccctttcctttcagAGCTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACcagtaaagatgcctggccaagtgggcagtggatgaaagtagaggaggcaata Alignment from Spaln_aa2Genome AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACCA agagctcacatcaagctctaggagtatgtctgctctccctttcctttcagAGCTTGAGGAAGATGGCAcATAATAACAACGCACTTACAGTACCAgtaaagatgcctggccaagtgggcagtggatgaaagtagaggaggcaata Alignment from Spaln_nt2Genome AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACCA agagctcacatcaagctctaggagtatgtctgctctccctttcctttcagAGCTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACCAgtaaagatgcctggccaagtgggcagtggatgaaagtagaggaggcaata Alignment from Pairagon AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACCA agagctcacatcaagctctaggagtatgtctgctctccctttcctttcagAGCTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACCAgtaaagatgcctggccaagtgggcagtggatgaaagtagaggaggcaata Alignment from Exonerate_protein2genome AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAA agagctcacatcaagctctaggagtatgtctgctctccctttcctttcagAGCTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACCAGTAAAGATGCCTGGCCAAGTGggcagtggatgaaagtagaggaggcaata Alignment from Exonerate_coding2genome agagctcacatcaagctctaggagtatgtctgctctccctttcctttcagagcttgaggaagatggcacataataacaacgcacttacagtaccagtaaagatgcctggccaagtgggcagtggatgaaagtagaggaggcaata Alignment from GeneWise agagctcacatcaagctctaggagtatgtctgctctccctttcctttcagagcttgaggaagatggcacataataacaacgcacttacagtaccagtaaagatgcctggccaagtgggcagtggatgaaagtagaggaggcaata #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAA-TCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAACTCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAA-TCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAACTCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAA-TCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAAcTCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAA-TCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAACTCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAA-TCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAACTCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAA-TCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAACTCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAA-TCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAACTCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAA-TCTGACCAGCTGGAG atgaatgcgtttgatggcaaggtccaagcctatatttgattttcaaatagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATGCGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAACTCTGACCAGCTGGAAgtaaatcagaattgtcttacactgcataagacactccttctgctggggcg #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAAC-ATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtggtgagtctggagactttatgcagcgattttctttttgtagGAAGTAGGACGACTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACCATCGACCGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgagtacccaaccataagaggagtactggccaccagataattgcagttt Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAAC-ATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtggtgagtctggagactttatgcagcgattttctttttgtagGAAGTAGGACGACTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACCATCGACCGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgagtacccaaccataagaggagtactggccaccagataattgcagttt Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAAC-ATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtggtgagtctggagactttatgcagcgattttctttttgtagGAAGTAGGACGACTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACcATCGACCGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgagtacccaaccataagaggagtactggccaccagataattgcagttt Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAA-CATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtggtgagtctggagactttatgcagcgattttctttttgtagGAAGTAGGACGACTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACCATCGACCGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgagtacccaaccataagaggagtactggccaccagataattgcagttt Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAA-CATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtggtgagtctggagactttatgcagcgattttctttttgtagGAAGTAGGACGACTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACCATCGACCGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgagtacccaaccataagaggagtactggccaccagataattgcagttt Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAAC-ATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtggtgagtctggagactttatgcagcgattttctttttgtagGAAGTAGGACGACTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACCATCGACCGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgagtacccaaccataagaggagtactggccaccagataattgcagttt Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAAC-ATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtggtgagtctggagactttatgcagcgattttctttttgtagGAAGTAGGACGACTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACCATCGACCGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgagtacccaaccataagaggagtactggccaccagataattgcagttt Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAAC-ATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtggtgagtctggagactttatgcagcgattttctttttgtagGAAGTAGGACGACTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACCATCGACCGGCTAGAGGGTGACCACCAGTTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgagtacccaaccataagaggagtactggccaccagataattgcagttt #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAG-CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaagcaacaccttactatagacctgcttctcatctgcctctagGTTAGAAAAAAACCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCTATAGGTCCCTGGATCCAGGCAAAGGTCAAGgtaagcgttgggagactgtgctcatggagatcagtccagagcaaagtggt Alignment from CESAR GTCAGAAAG----CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaagcaacaccttactatagacctgcttctcatctgcctctagGTTAGAAAAAAACCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCTATAGGTCCCTGGATCCAGGCAAAGGTCAAGgtaagcgttgggagactgtgctcatggagatcagtccagagcaaagtggt Alignment from Spaln_aa2Genome ---AGAAAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGA tccagtcaaagcaacaccttactatagacctgcttctcatctgcctctaggttagAAAAAAACCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCTATAGGTCCCTGGATCCAGGCAAAGGTCAAGgtaagcgttgggagactgtgctcatggagatcagtccagagcaaagtggt Alignment from Spaln_nt2Genome GTCAGAAAG----CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaagcaacaccttactatagacctgcttctcatctgcctctagGTTAGAAAAAAACCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCT---CCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCTATAGGTCCCTGGATCCAGGCAAAGGTCAAGgtaagcgttgggagactgtgctcatggagatcagtccagagcaaagtggt Alignment from Pairagon GTCAGAAA--------------GCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaagcaacaccttactatagacctgcttctcatctgcctctagGTTAGAAAAAAACCTTGCCCCTGCT----------CATGAGCAGACATTCCAAGAGAAGCT---CCGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCTATAGGTCCCTGGATCCAGGCAAAGGTCAAGgtaagcgttgggagactgtgctcatggagatcagtccagagcaaagtggt Alignment from Exonerate_protein2genome GTCAGAAAG----CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaagcaacaccttactatagacctgcttctcatctgcctctagGTTAGAAAAAAACCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCTATAGGTCCCTGGATCCAGGCAAAGGTCAAGgtaagcgttgggagactgtgctcatggagatcagtccagagcaaagtggt Alignment from Exonerate_coding2genome GTCAGAAAG----CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaagcaacaccttactatagacctgcttctcatctgcctctagGTTAGAAAAAAACCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCTATAGGTCCCTGGATCCAGGCAAAGGTCAAGgtaagcgttgggagactgtgctcatggagatcagtccagagcaaagtggt Alignment from GeneWise -----------GTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtcaaagcaacaccttactatagacctgcttctcatctgcctctaggttagAAAAAAACCTTGCCCCTGCTCATGAGCAGACATTCCAAGAGAAGCTC---CGGCAGCAAGTTAATGAGAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCTATAGGTCCCTGGATCCAGGCAAAGGTCAAGgtaagcgttgggagactgtgctcatggagatcagtccagagcaaagtggt #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTG-GAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTACGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTG-GAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTACGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTG-GAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAcGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTG-GAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTACGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTG-GAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTACGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTG-GAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTACGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTG-GAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTACGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAG-CTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTACGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATC-TGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from CESAR GCAGAGACTGCTGCCAACAGGATC-TGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATC-TGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCcTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGAT-CTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Pairagon GCAGAGACTGCTGCCAACAGGAT-CTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATC-TGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATC-TGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from GeneWise GCAGAGACTGCTGCCAACAGG-ATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACA-GCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATACGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTaggtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACA-GCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATACGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTaggtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACA-GCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAcGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACA-GCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATACGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACA-GCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATACGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACA-GCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATACGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACA-GCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATACGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAA-ACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATACGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAG-ATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagaaATAGTTGACGGGAACCTGAAGCATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAggttggttgatgcaaaatgcctagttgggccagatcatccagctgctctga Alignment from CESAR aaATTGTTGACGGGAACCTGAAG-ATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagaaATAGTTGACGGGAACCTGAAGCATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAggttggttgatgcaaaatgcctagttgggccagatcattcttctttccaat Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAG-ATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGcATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatccagctgctctga Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAG-ATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGCATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatccagctgctctga Alignment from Pairagon AAATTGTTGACGGGAACCTGAAG-ATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGCATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatccagctgctctga Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAG-ATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGCATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatccagctgctctga Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAG-ATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGCATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatccagctgctctga Alignment from GeneWise AAATTGTTGACGGGAACCTG-AAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gtattgggggggaacaaaggctgtctcatttttttccccccaatctgcagAAATAGTTGACGGGAACCTGAAGCATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgttggttgatgcaaaatgcctagttgggccagatcatccagctgctctga #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTC-ATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacaggtGCTAGACTGCCTAGGCCCGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAggtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTC-ATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacaggtGCTAGACTGCCTAGGCCCGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAggtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTC-ATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCcATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTC-ATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTT-CATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTC-ATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTC-ATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTC-ATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tggtcttcaactcatgaccttcaacatgacaccatttctgttgtctacagGTGCTAGACTGCCTAGGCCCGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAACGTAAATAACGCTCTAGACTTCCATAGCTACCAAAGGTGTGAAGCTGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggataccagttgtgaggaagcaagatgttat #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCA-GATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcaggtATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from CESAR gcATGGACTTA------CCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCA-GATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcaggtATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Spaln_aa2Genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCA-GATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTcGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Spaln_nt2Genome GCATGGACTTACCC------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCA-GATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Pairagon GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGC-AGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Exonerate_protein2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCA-GATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from Exonerate_coding2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCA-GATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG gagagttatctggaacgatagagatgagccctgtgttttgttctctgcagGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt Alignment from GeneWise ----------------------------------------------------------------------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACT-GCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG GAGAGTTATCTGGAACGATAGAGATGAGCCCTGTGTTTTGTTCTCTGCAGGTATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCTTGCACTGCTCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtaagtgtactactggtaatcaggtgtcccaagcagcaatatcagaactt #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATC-TCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTAGGTCAGGGGGAAggtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATC-TCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTAGGTCAGGGGGAAggtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Spaln_aa2Genome cttattccttagatctgcctatagcatcaccattgtgctttcccacccagttactggacagtgaccaggagttgtatcgcatattccctcttaccattcgctgagtggtggcaacaggaggtggcagagaccgtttttaccagcaatgctgaaacagaccgtcttgaggcacaaaacaaacaactaggtcagggggaaggtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCAT-CTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCAC------------AAAACAAACAACTAGGTCAGGGGGAAGgtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCA-TCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTT---TACCAGCAATGCTGAAACAGACCGTCTTGAGGCAC------------AAAACAAACAACTAGGTCAGGGGGAAGgtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATC-TCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAG------------GCACAAAACAAACAACTAGGTCAGGGGGAAGgtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATC-TCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAG------------GCACAAAACAAACAACTAGGTCAGGGGGAAGgtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATC-TCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattccttagatctgcctatagcatcaccattgtgctttcccacccagTTACTGGACAGTGACCAGGAGTTGTATCGCATATTCCCTCTTACCATTCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACCGTTTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTAGGTCAGGGGGAAGgtaaaaacattccacccatcttagactgcaggagcaaaggctagaaggca #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACA-AAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACACAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACA-AAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACACAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Spaln_aa2Genome ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagtatcctcctccactgatcccccaacgtggggaggtgaatgcagctgacgcttttgacattggctcctttgatgaggaggacacacaaaggaatcaaggtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACA-AAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACACAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACA-AAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACACAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACA-AAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACACAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACA-AAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACACAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG- ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACACAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTC-CGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCCTGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGA-TCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCCTGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTC-CGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCcTGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCC-GATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCCTGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCC-GATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCCTGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGA-TCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCCTGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGA-TCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCCTGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTC-CGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttgtcttcctacttactgttgacacagcctttctgttgttttagGCTGTAGAACTACTTGATTCCTTCTCCCCTGAACTCCTGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGTAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcatgaccttccagccatgacttttatttctcttaacccaggat #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATG-CTCTTCAAGTTGTTGCGGgg GGgtgtgagtacctacacattcacttcaaacaggtgcttctctcctccaggGGCACACATGGGTACATAGCTCCCAAGGTACTCCAAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCCTCTTCAAATTGTTGCGAgggtgagttagccatgaggggggagcccttcacagctggctgtcagaggcaa Alignment from CESAR GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATG-CTCTTCAAGTTGTTGCGGgg GGgtgtaagtacctacacattcacttcaaacaggtgcttctctcctccaggGGCACACATGGGTACATAGCTCCCAAGGTACTCCAAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCCTCTTCAAATTGTTGCGAgggtgagttagccatgaggggggagcccttcacagctggctgtcagaggcaa Alignment from Spaln_aa2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATG-CTCTTCAAGTTGTTGCGGGG GGGTgtgagtacctacacattcacttcaaacaggtgcttctctcctccagGGGCACACATGGGTACATAGCTCCCAAGGTACTCCAAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGcCTCTTCAAATTGTTGCGAGGgtgagttagccatgaggggggagcccttcacagctggctgtcagaggcaa Alignment from Spaln_nt2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGC-TCTTCAAGTTGTTGCGGGG GGGTgtgagtacctacacattcacttcaaacaggtgcttctctcctccagGGGCACACATGGGTACATAGCTCCCAAGGTACTCCAAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCCTCTTCAAATTGTTGCGAGGgtgagttagccatgaggggggagcccttcacagctggctgtcagaggcaa Alignment from Pairagon GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATG-CTCTTCAAGTTGTTGCGGGG GGGTgtgagtacctacacattcacttcaaacaggtgcttctctcctccagGGGCACACATGGGTACATAGCTCCCAAGGTACTCCAAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCCTCTTCAAATTGTTGCGAGGgtgagttagccatgaggggggagcccttcacagctggctgtcagaggcaa Alignment from Exonerate_protein2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATG-CTCTTCAAGTTGTTGCGGGG GGGTgtgagtacctacacattcacttcaaacaggtgcttctctcctccagGGGCACACATGGGTACATAGCTCCCAAGGTACTCCAAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCCTCTTCAAATTGTTGCGAGGgtgagttagccatgaggggggagcccttcacagctggctgtcagaggcaa Alignment from Exonerate_coding2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATG-CTCTTCAAGTTGTTGCGGGG GGGTgtgagtacctacacattcacttcaaacaggtgcttctctcctccagGGGCACACATGGGTACATAGCTCCCAAGGTACTCCAAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCCTCTTCAAATTGTTGCGAGGgtgagttagccatgaggggggagcccttcacagctggctgtcagaggcaa Alignment from GeneWise GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATG-CTCTTCAAGTTGTTGCGGGG GGGTgtgagtacctacacattcacttcaaacaggtgcttctctcctccagGGGCACACATGGGTACATAGCTCCCAAGGTACTCCAAAAAGGTGTAGCCTATGATAGCAGCGCTGACTGGTTCTCCTTGGGTTGCATGCCTCTTCAAATTGTTGCGAGGgtgagttagccatgaggggggagcccttcacagctggctgtcagaggcaa #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCAT-GGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaagtcagtctagagaatgtcccttcggaccctccccccaggtGCAGAATTGCATTATCACCTATCACAGCATCGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtgagttatagttgagagagtacactctgtttaccccccccctattctgc Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCAT-GGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaagtcagtctagagaatgtcccttcggaccctccccccaggtGCAGAATTGCATTATCACCTATCACAGCATCGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtgagttatagttgagagagtacactctgtttaccccccccctattctgc Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCAT-GGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagtcagtctagagaatgtcccttcggaccctccccccagGTGCAGAATTGCATTATCACCTATCACAGCATcGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtgagttatagttgagagagtacactctgtttaccccccccctattctgc Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCAT-GGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagtcagtctagagaatgtcccttcggaccctccccccagGTGCAGAATTGCATTATCACCTATCACAGCATCGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtgagttatagttgagagagtacactctgtttaccccccccctattctgc Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCAT-GGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagtcagtctagagaatgtcccttcggaccctccccccagGTGCAGAATTGCATTATCACCTATCACAGCATCGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtgagttatagttgagagagtacactctgtttaccccccccctattctgc Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCAT-GGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagtcagtctagagaatgtcccttcggaccctccccccagGTGCAGAATTGCATTATCACCTATCACAGCATCGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtgagttatagttgagagagtacactctgtttaccccccccctattctgc Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCAT-GGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagtcagtctagagaatgtcccttcggaccctccccccagGTGCAGAATTGCATTATCACCTATCACAGCATCGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtgagttatagttgagagagtacactctgtttaccccccccctattctgc Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCAT-GGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagtcagtctagagaatgtcccttcggaccctccccccagGTGCAGAATTGCATTATCACCTATCACAGCATCGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtgagttatagttgagagagtacactctgtttaccccccccctattctgc #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GACAAGAAACGCATC-AAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gattgccctgacttgctgggcatgcttatgacctaggctttcctccacaggCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCCAAGATGAAACAGGGAGAGACACTGGCTCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtaagtcaagtggtcaggtggactcccacttagcttgccttctatgattc Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAGAAACGCATC-AAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gattgccctgacttgctgggcatgcttatgacctaggctttcctccacaggCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCCAAGATGAAACAGGGAGAGACACTGGCTCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtaagtcaagtggtcaggtggactcccacttagcttgccttctatgattc Alignment from Spaln_aa2Genome GAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gattgccctgacttgctgggcatgcttatgacctaggctttcctccacaggcatgctaagaggtgtttggaaaacaagAAACACATCCAAGATGAAACAGGGAGAGACACTGGCTCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtaagtcaagtggtcaggtggactcccacttagcttgccttctatgattc Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGGA---CAAGAAACGCATC-AAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gattgccctgacttgctgggcatgcttatgacctaggctttcctccacagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCCAAGATGAAACAGGGAGAGACACTGGCTCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtaagtcaagtggtcaggtggactcccacttagcttgccttctatgattc Alignment from Pairagon GTACGCCATGAAGTGTCTGG---ACAAGAAACGCAT-CAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gattgccctgacttgctgggcatgcttatgacctaggctttcctccacagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCCAAGATGAAACAGGGAGAGACACTGGCTCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtaagtcaagtggtcaggtggactcccacttagcttgccttctatgattc Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGACAAGAAACGC----ATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gattgccctgacttgctgggcatgcttatgacctaggctttcctccacagGCATGCTAAGAGGTGTTTGGAAAACAAGAAACACATCCAAGATGAAACAGGGAGAGACACTGGCTCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtaagtcaagtggtcaggtggactcccacttagcttgccttctatgattc Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCA gattgccctgacttgctgggcatgcttatgacctaggctttcctccacaggcatgctaagaggtgtttggaaaacaagaaacacatccaagatgaaacagggagagacactggctctgaatacgcggATTATGCTATCACTTGTGAGCACTGGGGTAAGTCAAGTGGTCAGGTGGACTCCCACTTAGCTTGCCTTCTATGATTC Alignment from GeneWise GAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG gattgccctgacttgctgggcatgcttatgacctaggctttcctccacaggcatgctaagaggtgtttggaaaacaagAAACACATCCAAGATGAAACAGGGAGAGACACTGGCTCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGGgtaagtcaagtggtcaggtggactcccacttagcttgccttctatgattc #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGT-CAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from CESAR CCATACATTGAGGAGATTTGT-CAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGT-CAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTcCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTC-AGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Pairagon CCATACATTGAGGAGATTTGT-CAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGT-CAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagCCCTACATTGAGGATATTTGTCCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from Exonerate_coding2genome agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagccctacattgaggatatttgtccagaaactccgaagggatttattccaaaagtttatagagaggtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact Alignment from GeneWise agaccaaggcttgctagattgattcaccgattaagtccctttgtctgcagccctacattgaggatatttgtccagaaactccgaagggatttattccaaaagtttatagagaggtaagtttgaaggacttctttgcccctgcagccagggtggttggaaaact #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcatacctcccaactctgcccacacagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtgcgtttggggtgatcatcatggtatcagacattggtaagatgtcactc Alignment from CESAR CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcatacctcccaactctgcccacacagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtgcgtttggggtgatcatcatggtatcagacattggtaagatgtcactc Alignment from Spaln_aa2Genome CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcatacctcccaactctgcccacacagCCCTTCTCCCAAcAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtgcgtttggggtgatcatcatggtatcagacattggtaagatgtcactc Alignment from Spaln_nt2Genome CCCTTTTCA-AAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcatacctcccaactctgcccacacagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtgcgtttggggtgatcatcatggtatcagacattggtaagatgtcactc Alignment from Pairagon CCCTT-TTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcatacctcccaactctgcccacacagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtgcgtttggggtgatcatcatggtatcagacattggtaagatgtcactc Alignment from Exonerate_protein2genome CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcatacctcccaactctgcccacacagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtgcgtttggggtgatcatcatggtatcagacattggtaagatgtcactc Alignment from Exonerate_coding2genome CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcatacctcccaactctgcccacacagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtgcgtttggggtgatcatcatggtatcagacattggtaagatgtcactc Alignment from GeneWise CCCTTTTCA-AAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcatacctcccaactctgcccacacagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtgcgtttggggtgatcatcatggtatcagacattggtaagatgtcactc #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gctgccatggctgcagctgagacttaccgctctctcctccacctccacagGAGCAGCCTGGCTCATCTCGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTAGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtatgtatcatgcccaattacaacccagacttcccataagttgcagaggc Alignment from CESAR GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gctgccatggctgcagctgagacttaccgctctctcctccacctccacagGAGCAGCCTGGCTCATCTCGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTAGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtatgtatcatgcccaattacaacccagacttcccataagttgcagaggc Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgccatggctgcagctgagacttaccgctctctcctccacctccacagGAGCAGCCTGGCTCATCTcGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTAGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtatgtatcatgcccaattacaacccagacttcccataagttgcagaggc Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgccatggctgcagctgagacttaccgctctctcctccacctccacagGAGCAGCCTGGCTCATCTCGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTAGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtatgtatcatgcccaattacaacccagacttcccataagttgcagaggc Alignment from Pairagon GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgccatggctgcagctgagacttaccgctctctcctccacctccacagGAGCAGCCTGGCTCATCTCGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTAGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtatgtatcatgcccaattacaacccagacttcccataagttgcagaggc Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgccatggctgcagctgagacttaccgctctctcctccacctccacagGAGCAGCCTGGCTCATCTCGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTAGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtatgtatcatgcccaattacaacccagacttcccataagttgcagaggc Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgccatggctgcagctgagacttaccgctctctcctccacctccacagGAGCAGCCTGGCTCATCTCGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTAGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtatgtatcatgcccaattacaacccagacttcccataagttgcagaggc Alignment from GeneWise GAGCAGCCTGGCTCA-CCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgccatggctgcagctgagacttaccgctctctcctccacctccacagGAGCAGCCTGGCTCATCTCGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTAGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtatgtatcatgcccaattacaacccagacttcccataagttgcagaggc #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCC-AAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from CESAR GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCC-AAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCC-AAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCcAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Spaln_nt2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGC-CAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Pairagon GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTG-CCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCC-AAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCC-AAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat Alignment from GeneWise GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCT-GCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG catcggtggcagctgtccatgggacatggctctgtctcttgtacctgcagGTAGAAAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAAGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCCAAGTACTACGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaagtctcatagtcacaatagtaggaaatgaagtacacatggctgccat #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGCGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAggtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGCGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAggtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGcGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGCGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGCGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGCGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGCGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGG-AAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGCGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATC-ATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcctgcacctccctcctctctccctacagTCTGGCTTTGAGTCAGACATGAGTGAGATCCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgggtcctgttggtgtactgtagctagcccctatcagatcctacccttg Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATC-CTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcctgcacctccctcctctctccctacagTCTGGCTTTGAGTCAGACATGAGTGAGATCCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgggtcctgttggtgtactgtagctagcccctatcagatcctacccttg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATC-CTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcctgcacctccctcctctctccctacagTCTGGCTTTGAGTCAGACATGAGTGAGATCCTTtCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgggtcctgttggtgtactgtagctagcccctatcagatcctacccttg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATC-CTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcctgcacctccctcctctctccctacagTCTGGCTTTGAGTCAGACATGAGTGAGATCCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgggtcctgttggtgtactgtagctagcccctatcagatcctacccttg Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCA-TCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcctgcacctccctcctctctccctacagTCTGGCTTTGAGTCAGACATGAGTGAGATCCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgggtcctgttggtgtactgtagctagcccctatcagatcctacccttg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATC-CTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcctgcacctccctcctctctccctacagTCTGGCTTTGAGTCAGACATGAGTGAGATCCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgggtcctgttggtgtactgtagctagcccctatcagatcctacccttg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATC-CTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcctgcacctccctcctctctccctacagTCTGGCTTTGAGTCAGACATGAGTGAGATCCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgggtcctgttggtgtactgtagctagcccctatcagatcctacccttg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATC-ATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcctgcacctccctcctctctccctacagTCTGGCTTTGAGTCAGACATGAGTGAGATCCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtgggtcctgttggtgtactgtagctagcccctatcagatcctacccttg #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATC-CTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcatgtcataaatcaggctagcttactaacttattttatgtttagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCCTTCCTTTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGTATCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtacattggtggtgagacaataattagcctgcaaacagtaaatcaaggtg Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATC-CTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcatgtcataaatcaggctagcttactaacttattttatgtttagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCCTTCCTTTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGTATCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtacattggtggtgagacaataattagcctgcaaacagtaaatcaaggtg Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATC-CTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcatgtcataaatcaggctagcttactaacttattttatgtttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCcCTTCCTTTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGTATCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtacattggtggtgagacaataattagcctgcaaacagtaaatcaaggtg Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTG-GTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcatgtcataaatcaggctagcttactaacttattttatgtttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCCTTCCTTTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGTATCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtacattggtggtgagacaataattagcctgcaaacagtaaatcaaggtg Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCAT-CCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcatgtcataaatcaggctagcttactaacttattttatgtttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCCTTCCTTTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGTATCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtacattggtggtgagacaataattagcctgcaaacagtaaatcaaggtg Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATC-CTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcatgtcataaatcaggctagcttactaacttattttatgtttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCCTTCCTTTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGTATCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtacattggtggtgagacaataattagcctgcaaacagtaaatcaaggtg Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATC-CTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcatgtcataaatcaggctagcttactaacttattttatgtttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCCTTCCTTTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGTATCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtacattggtggtgagacaataattagcctgcaaacagtaaatcaaggtg Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATC-CTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcatgtcataaatcaggctagcttactaacttattttatgtttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCCTTCCTTTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGTATCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtacattggtggtgagacaataattagcctgcaaacagtaaatcaaggtg #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagggGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGCGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagggGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGCGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGCGGAAT---ACAGGCAGAgcaggtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGCGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGCGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGCGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGCGGAATACAGGCAGAGCAGgtgagatgtgatatagttagtatgacccttaatgcctcaggcccatgggg Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA---------GGCACAGAGGCAGAG-- cccatctggctttctgttaagcctttgtatttgttcactcctcacactagGGGGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCTTAGGTGCTGAGCACAGTGAGCCTCTCCAGGATAAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTAGAGGCGCGGAATACAGGCAGAGCAGGTGAGATgtgatatagttagtatgacccttaatgcctcaggcccatgggg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAggtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAggtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATcGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTG-TGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTC-CAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcctacttatacataaatgggtctatttattctctttacccttcaggaGGAAAAACTCCATTCCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACATTGgtgagattgtgtaaggtacgggttgggaaggctgggtaagtggggttgag Alignment from CESAR ggGGGAAGACTCCATTC-CAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcctacttatacataaatgggtctatttattctctttacccttcaggaGGAAAAACTCCATTCCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACATTGgtgagattgtgtaaggtacgggttgggaaggctgggtaagtggggttgag Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTC-CAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcctacttatacataaatgggtctatttattctctttacccttcagGAGGAAAAACTCCATTCcCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACATTGgtgagattgtgtaaggtacgggttgggaaggctgggtaagtggggttgag Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCC-AGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcctacttatacataaatgggtctatttattctctttacccttcagGAGGAAAAACTCCATTCCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACATTGgtgagattgtgtaaggtacgggttgggaaggctgggtaagtggggttgag Alignment from Pairagon GGGGGAAGACTCCATTC-CAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcctacttatacataaatgggtctatttattctctttacccttcagGAGGAAAAACTCCATTCCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACATTGgtgagattgtgtaaggtacgggttgggaaggctgggtaagtggggttgag Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTC-CAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcctacttatacataaatgggtctatttattctctttacccttcagGAGGAAAAACTCCATTCCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACATTGgtgagattgtgtaaggtacgggttgggaaggctgggtaagtggggttgag Alignment from Exonerate_coding2genome actggcctacttatacataaatgggtctatttattctctttacccttcaggaggaaaaactccattcccaatccttcttgggtatggcccagcaacattcttcacacacattggtgagattgtgtaaggtacgggttgggaaggctgggtaagtggggttgag Alignment from GeneWise actggcctacttatacataaatgggtctatttattctctttacccttcaggaggaaaaactccattcccaatccttcttgggtatggcccagcaacattcttcacacacattggtgagattgtgtaaggtacgggttgggaaggctgggtaagtggggttgag #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACCAATGTGGAGCTG-GTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGCGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAggtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from CESAR GTGTACAGTGCCACCAATGTGGAGCTG-GTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGCGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAggtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Spaln_aa2Genome GTGTACAGTGCCACCAATGTGGAGCTG-GTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGcGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Spaln_nt2Genome GTGTACAGTGCCACCAATGTGGAGCTG-GTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGCGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Pairagon GTGTACAGTGCCACCAATGTGGAGCTG-GTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGCGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTG-GTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGCGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Exonerate_coding2genome GTGTACAGTGCCACCAATGTGGAGCTG-GTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGGGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAG---CAGCAC atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGCGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGGTGAGCCCACTTGCTACAGGCTTCTGGTTAAGCTTTCTAGGTGATGTACC Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTG-GTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGCGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCC-AACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCTTTAGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCC-AACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCTTTAGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCC-AACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCTTTAGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCcAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCC-AACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCTTTAGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATG-CCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCTTTAGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCC-AACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCTTTAGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from Exonerate_coding2genome AAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCC-AACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgCAGCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCTTTAGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAAT-GCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ggattggtcctcttatctaatgaactattttctttcctccctggctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCTTTAGAGCTTGCTGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCTCCTCAAACATAATGCCCAATGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaggatcgtaggtagtgcttcattacttgtgaagggtggctataggtct #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAG---GACAGA ggtacatatggtgattggcctccacccaaaataatttttttccttcctagCTGCTCAGCTCAACATTGCATGTGGCAGTCAGGACTCGACCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAACAGAgtaccgatgaatgtaacccgccttgaatgaagcctacagatactgacaac Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA ggtacatatggtgattggcctccacccaaaataatttttttccttcctagCTGCTCAGCTCAACATTGCATGTGGCAGTCAGGACTCGACCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAACAGAgtaccgatgaatgtaacccgccttgaatgaagcctacagatactgacaac Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGT-CATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA ggtacatatggtgattggcctccacccaaaataatttttttccttcctagCTGCTCAGCTCAACATTGCATGTGGCAGTCAGGACTCGAcCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAACAGAgtaccgatgaatgtaacccgccttgaatgaagcctacagatactgacaac Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTC-ATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACA---GA ggtacatatggtgattggcctccacccaaaataatttttttccttcctagCTGCTCAGCTCAACATTGCATGTGGCAGTCAGGACTCGACCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAACAGAgtaccgatgaatgtaacccgccttgaatgaagcctacagatactgacaac Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGG---ACAGA ggtacatatggtgattggcctccacccaaaataatttttttccttcctagCTGCTCAGCTCAACATTGCATGTGGCAGTCAGGACTCGACCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAACAGAgtaccgatgaatgtaacccgccttgaatgaagcctacagatactgacaac Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGAC---AGA ggtacatatggtgattggcctccacccaaaataatttttttccttcctagCTGCTCAGCTCAACATTGCATGTGGCAGTCAGGACTCGACCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAACAGAgtaccgatgaatgtaacccgccttgaatgaagcctacagatactgacaac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGAGAA ggtacatatggtgattggcctccacccaaaataatttttttccttcctagCTGCTCAGCTCAACATTGCATGTGGCAGTCAGGACTCGACCATTATGAGTGCACTGAGCATCTCTTCACTAGCAAAACTGATCTCAATGCAAGGGACAACAGAgtaccgatgaatgtaacccgccttgaatgaagcctacagatactgacaac #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTG-CTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATGATGCTGTGAAGATCAACTACTACAAAAACATTAAACTGTTGCCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTG-CTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATGATGCTGTGAAGATCAACTACTACAAAAACATTAAACTGTTGCCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTG-CTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATGATGCTGTGAAGATCAACTACTACAAAAACATTAAACTGTTGcCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGC-TCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATGATGCTGTGAAGATCAACTACTACAAAAACATTAAACTGTTGCCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTG-CTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATGATGCTGTGAAGATCAACTACTACAAAAACATTAAACTGTTGCCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTG-CTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATGATGCTGTGAAGATCAACTACTACAAAAACATTAAACTGTTGCCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTG-CTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATGATGCTGTGAAGATCAACTACTACAAAAACATTAAACTGTTGCCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTG-CTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG tgtggagtcctataaggctagagtttttacaatggtcattgatgctttagGAAGGAGACAGTGCCCTACATGATGCTGTGAAGATCAACTACTACAAAAACATTAAACTGTTGCCTCTTACATGGGGCAGACATGATGGCAGCCAAGAACCTAgttggtttgctcttgaggcttggtggtttggatagccccacaaggtgctg #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTG-CCTTTGTCTGTGCAGTCACTCag ttggtggccctcttcccgtcgttccttgataagatcatttgtctttttaggGAAAAGGCAGATTTACCCCTTGTCTGTTCAGTCACTTaggtgagtatttattgcaaagagggtgggtcagtgtcatgtagagctaactg Alignment from CESAR gGAAAAGGCAGACGTG-CCTTTGTCTGTGCAGTCACTCag ttggtggccctcttcccgtcgttccttgataagatcatttgtctttttaggGAAAAGGCAGATTTACCCCTTGTCTGTTCAGTCACTTaggtgagtatttattgcaaagagggtgggtcagtgtcatgtagagctaactg Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTG-CCTTTGTCTGTGCAGTCACTCAG ttggtggccctcttcccgtcgttccttgataagatcatttgtctttttagGGAAAAGGCAGATTTAcCCCTTGTCTGTTCAGTCACTTAGgtgagtatttattgcaaagagggtgggtcagtgtcatgtagagctaactg Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCT-TTGTCTGTGCAGTCACTCAG ttggtggccctcttcccgtcgttccttgataagatcatttgtctttttagGGAAAAGGCAGATTTACCCCTTGTCTGTTCAGTCACTTAGgtgagtatttattgcaaagagggtgggtcagtgtcatgtagagctaactg Alignment from Pairagon GGAAAAGGCAGACGTG-CCTTTGTCTGTGCAGTCACTCAG ttggtggccctcttcccgtcgttccttgataagatcatttgtctttttagGGAAAAGGCAGATTTACCCCTTGTCTGTTCAGTCACTTAGgtgagtatttattgcaaagagggtgggtcagtgtcatgtagagctaactg Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTG-CCTTTGTCTGTGCAGTCACTCAG ttggtggccctcttcccgtcgttccttgataagatcatttgtctttttagGGAAAAGGCAGATTTACCCCTTGTCTGTTCAGTCACTTAGgtgagtatttattgcaaagagggtgggtcagtgtcatgtagagctaactg Alignment from Exonerate_coding2genome ttggtggccctcttcccgtcgttccttgataagatcatttgtctttttagggaaaaggcagatttaccccttgtctgttcagtcacttaggtgagtatttattgcaaagagggtgggtcagtgtcatgtagagctaactg Alignment from GeneWise ttggtggccctcttcccgtcgttccttgataagatcatttgtctttttagggaaaaggcagatttaccccttgtctgttcagtcacttaggtgagtatttattgcaaagagggtgggtcagtgtcatgtagagctaactg #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTG-CTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAAATCTATACTGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTG-CTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAAATCTATACTGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTG-CTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGcCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAAATCTATACTGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGC-TGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAAATCTATACTGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTG-CTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAAATCTATACTGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTG-CTGTTTGGCTTCGCTGAACAGAAGCAGCTCCT GGAAGTAGAA cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTggaaggcatgaggccaccattagaaatctatactgactatgacaactcagtactggacggacaacttgcaatgtacatcctcaatgtagCCAGAATCAC Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTG-CTGTTTGGCTTCGCTGAACAGAAGCAGCTCCT GGAAGTAGAA cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTggaaggcatgaggccaccattagaaatctatactgactatgacaactcagtactggacggacaacttgcaatgtacatcctcaatgtagCCAGAATCAC Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTG-CTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacgctctcctcaggcacccagagcatctccttttgtcccctacagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAACTGTTATTCTCCAGCCTCTTGCCTGTTTGGCTTTGCTAATCAAAAGCAGCTCTTGGAAGGCATGAGGCCACCATTAGAAATCTATACTGACTAT---GACAACTCAgtactggacggacaacttgcaatgtacatcctcaatgtagccagaatcac #### Bscl2_ID2426_9 --> 2 - 1 Original Alignment gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAG-AGCCCTGAAGATCCCTCAGGAACAg agtgtgaaatcagtggcttgggggtagatcctcctgctgtgtgtatccaggtCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGCGAGCAGCCCTGAAGATCCCTCAAGAACAggtaagctcagtctcccttacatctttcttgacataaatttacagttccga Alignment from CESAR gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAG-AGCCCTGAAGATCCCTCAGGAACAg agtgtgaaatcagtggcttgggggtagatcctcctgctgtgtgtatccaggtCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGCGAGCAGCCCTGAAGATCCCTCAAGAACAggtaagctcagtctcccttacatctttcttgacataaatttacagttccga Alignment from Spaln_aa2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAG-AGCCCTGAAGATCCCTCAGGAACAG agtgtgaaatcagtggcttgggggtagatcctcctgctgtgtgtatccagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGCGAGcAGCCCTGAAGATCCCTCAAGAACAGgtaagctcagtctcccttacatctttcttgacataaatttacagttccga Alignment from Spaln_nt2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAG-AGCCCTGAAGATCCCTCAGGAACAG agtgtgaaatcagtggcttgggggtagatcctcctgctgtgtgtatccagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGCGAGCAGCCCTGAAGATCCCTCAAGAACAGgtaagctcagtctcccttacatctttcttgacataaatttacagttccga Alignment from Pairagon GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAG-AGCCCTGAAGATCCCTCAGGAACAG agtgtgaaatcagtggcttgggggtagatcctcctgctgtgtgtatccagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGCGAGCAGCCCTGAAGATCCCTCAAGAACAGgtaagctcagtctcccttacatctttcttgacataaatttacagttccga Alignment from Exonerate_protein2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAG-AGCCCTGAAGATCCCTCAGGAACAG agtgtgaaatcagtggcttgggggtagatcctcctgctgtgtgtatccagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGCGAGCAGCCCTGAAGATCCCTCAAGAACAGgtaagctcagtctcccttacatctttcttgacataaatttacagttccga Alignment from Exonerate_coding2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAG-AGCCCTGAAGATCCCTCAGGAACAG agtgtgaaatcagtggcttgggggtagatcctcctgctgtgtgtatccagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGCGAGCAGCCCTGAAGATCCCTCAAGAACAGgtaagctcagtctcccttacatctttcttgacataaatttacagttccga Alignment from GeneWise GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAG-AGCCCTGAAGATCCCTCAGGAACAG agtgtgaaatcagtggcttgggggtagatcctcctgctgtgtgtatccagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGCGAGCAGCCCTGAAGATCCCTCAAGAACAGgtaagctcagtctcccttacatctttcttgacataaatttacagttccga #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGA-GAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagttccgatactctcccccccattgcaacacttgccatttcttgcccagagGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGAATGGGCGAGGAGGAGCGGGAACCGGATGCTGGTGCTggtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGA-GAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagttccgatactctcccccccattgcaacacttgccatttcttgcccagagGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGAATGGGCGAGGAGGAGCGGGAACCGGATGCTGGTGCTggtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAAT-GGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccgatactctcccccccattgcaacacttgccatttcttgcccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGAATgGGCGAGGAGGAGCGGGAACCGGATGCTGGTGCTGgtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGA-GAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccgatactctcccccccattgcaacacttgccatttcttgcccagAGGGGCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGAATGGGCGAGGAGGAGCGGGAACCGGATGCTGGTGCTGgtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGA-GAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccgatactctcccccccattgcaacacttgccatttcttgcccagAGGGGCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGAATGGGCGAGGAGGAGCGGGAACCGGATGCTGGTGCTGgtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAAT-GGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccgatactctcccccccattgcaacacttgccatttcttgcccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCACTGAATGGGCGAGGAGGAGCGGGAACCGGATGCTGGTGCTGgtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from Exonerate_coding2genome cagttccgatactctcccccccattgcaacacttgccatttcttgcccagaggggcaaccagaagaggagaaagcaaagaagtggccactgaatgggcgaggaggagcgggaaccggatgctggtgctggtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag Alignment from GeneWise cagttccgatactctcccccccattgcaacacttgccatttcttgcccagaggggcaaccagaagaggagaaagcaaagaagtggccactgaatgggcgaggaggagcgggaaccggatgctggtgctggtaggtgtggggtggcatactcatagccaggggtgctgtgtgctggggag #### Btaf1_ID7253_32 --> 2 - 0 Original Alignment gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAA-ATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatggggtcttgagtcctcaattccttctgtgacttttttaggtGTACTGGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTCTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCTAAACATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcagtcattgtagatgtaagtgtgctgctgtttgcatgaaa Alignment from CESAR gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAA-ATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatggggtcttgagtcctcaattccttctgtgacttttttaggtGTACTGGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTCTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCTAAACATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcagtcattgtagatgtaagtgtgctgctgtttgcatgaaa Alignment from Spaln_aa2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAA-ATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatggggtcttgagtcctcaattccttctgtgacttttttagGTGTACTGGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTCTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCTAAAcATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcagtcattgtagatgtaagtgtgctgctgtttgcatgaaa Alignment from Spaln_nt2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAA-ATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatggggtcttgagtcctcaattccttctgtgacttttttagGTGTACTGGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTCTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCTAAACATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcagtcattgtagatgtaagtgtgctgctgtttgcatgaaa Alignment from Pairagon GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAA-ATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatggggtcttgagtcctcaattccttctgtgacttttttagGTGTACTGGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTCTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCTAAACATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcagtcattgtagatgtaagtgtgctgctgtttgcatgaaa Alignment from Exonerate_protein2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAA-ATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatggggtcttgagtcctcaattccttctgtgacttttttagGTGTACTGGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTCTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCTAAACATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcagtcattgtagatgtaagtgtgctgctgtttgcatgaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAA-ATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatggggtcttgagtcctcaattccttctgtgacttttttagGTGTACTGGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTCTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCTAAACATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcagtcattgtagatgtaagtgtgctgctgtttgcatgaaa #### Btrc_ID9463_12 --> 1 - 2 Original Alignment gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGA-TTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg acttgttgtgaatactgtaacttattttcagtccttaatcaggggctcaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGCTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATgggtattatcactggtaatgtcttttaatcagaaaaagagttatgaagacac Alignment from CESAR gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGA-TTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg acttgttgtgaatactgtaacttattttcagtccttaatcaggggctcaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGCTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATgggtattatcactggtaatgtcttttaatcagaaaaagagttatgaagacac Alignment from Spaln_aa2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGA-TTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttattttcagtccttaatcaggggctcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGcTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtattatcactggtaatgtcttttaatcagaaaaagagttatgaagacac Alignment from Spaln_nt2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGA-TTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttattttcagtccttaatcaggggctcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGCTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtattatcactggtaatgtcttttaatcagaaaaagagttatgaagacac Alignment from Pairagon GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGA-TTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttattttcagtccttaatcaggggctcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGCTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtattatcactggtaatgtcttttaatcagaaaaagagttatgaagacac Alignment from Exonerate_protein2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGA-TTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttattttcagtccttaatcaggggctcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGCTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtattatcactggtaatgtcttttaatcagaaaaagagttatgaagacac Alignment from Exonerate_coding2genome acttgttgtgaatactgtaacttattttcagtccttaatcaggggctcaggctctgggacatagagtgtggagcatgcctgcaggtattggagggccatgaggagttggtacgctgcattcggctttgataacaaaaggatcgtaagcagaacgtatgatgggtattatcactggtaatgtcttttaatcagaaaaagagttatgaagacac Alignment from GeneWise GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATT-CGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttattttcagtccttaatcaggggctcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGCTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtattatcactggtaatgtcttttaatcagaaaaagagttatgaagacac #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGC-TTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag caaagagctagcttctttgattggactttgcccacattcactctctacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTTGGACTTACAAAAAACATTAAGTATGCCAACTGGTCCCTCTGGGAAAcggtaagtaaccagattctaaggagtaatgtaaaatgtttattgtgtggagg Alignment from CESAR GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGC-TTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag caaagagctagcttctttgattggactttgcccacattcactctctacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTTGGACTTACAAAAAACATTAAGTATGCCAACTGGTCCCTCTGGGAAAcggtaagtaaccagattctaaggagtaatgtaaaatgtttattgtgtggagg Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAG-AAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattggactttgcccacattcactctctacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTTGGACTTACAaAAAACATTAAGTATGCCAACTGGTCCCTCTGGGAAACGgtaagtaaccagattctaaggagtaatgtaaaatgtttattgtgtggagg Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGG-CTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattggactttgcccacattcactctctacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTTGGACTTACAAAAAACATTAAGTATGCCAACTGGTCCCTCTGGGAAACGgtaagtaaccagattctaaggagtaatgtaaaatgtttattgtgtggagg Alignment from Pairagon GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGG-CTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattggactttgcccacattcactctctacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTTGGACTTACAAAAAACATTAAGTATGCCAACTGGTCCCTCTGGGAAACGgtaagtaaccagattctaaggagtaatgtaaaatgtttattgtgtggagg Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGC-TTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattggactttgcccacattcactctctacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTTGGACTTACAAAAAACATTAAGTATGCCAACTGGTCCCTCTGGGAAACGgtaagtaaccagattctaaggagtaatgtaaaatgtttattgtgtggagg Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGC-TTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattggactttgcccacattcactctctacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTTGGACTTACAAAAAACATTAAGTATGCCAACTGGTCCCTCTGGGAAACGgtaagtaaccagattctaaggagtaatgtaaaatgtttattgtgtggagg Alignment from GeneWise GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGC-TTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattggactttgcccacattcactctctacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTTGGACTTACAAAAAACATTAAGTATGCCAACTGGTCCCTCTGGGAAACGgtaagtaaccagattctaaggagtaatgtaaaatgtttattgtgtggagg #### Cabp2_ID287_2 --> 0 - 0 Original Alignment GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGG-CCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from CESAR GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGG-CCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Spaln_aa2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGG-CCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGAcCCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Spaln_nt2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCA-GCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Pairagon GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCA-GCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Exonerate_protein2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGG-CCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTGTTTgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from Exonerate_coding2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGG-CCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTGTTTgtacataatcccttgcatactggcatcttaaagctggtggcttcat Alignment from GeneWise GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCA-GCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catattgacaaatgtatgtgggcattggttttggaactctgtctttctagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACTCCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAGGGGTCACAGGGCTACTCAGTCCTTGGTAGCCTTGTAGGACCCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtttgtacataatcccttgcatactggcatcttaaagctggtggcttcat #### Cabp2_ID288_3 --> 0 - 1 Original Alignment GATCGAGAGCTGAGA-CCAGAAGAGATCGAAg ttgttatactagagattgggaggcaaccggacctttctgttggctggcagGACCGGGAG---AGACCCAGAAAAAATTGAAggtaaagtttctataggtgattctatagctgaggtacagtgtgtactcagg Alignment from CESAR GATCGAGAGCTGAGA-CCAGAAGAGATCGAAg ttgttatactagagattgggaggcaaccggacctttctgttggctggcagGACCGGGAG---AGACCCAGAAAAAATTGAAggtaaagtttctataggtgattctatagctgaggtacagtgtgtactcagg Alignment from Spaln_aa2Genome GCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG ttgttatactagagattgggaggcaaccggacctttctgttggctggcagGACCGGGAGAGAC------CCAGAAAAAATTGAAGgtaaagtttctataggtgattctatagctgaggtacagtgtgtactcagg Alignment from Spaln_nt2Genome GATCGAGAGCTGAGACC-AGAAGAGATCGAAG ttgttatactagagattgggaggcaaccggacctttctgttggctggcagGACCGGGA---GAGACCCAGAAAAAATTGAAGgtaaagtttctataggtgattctatagctgaggtacagtgtgtactcagg Alignment from Pairagon ttgttatactagagattgggaggcaaccggacctttctgttggctggcaggaccgggagagacccagaaaaaattgaaggtaaagtttctataggtgattctatagctgaggtacagtgtgtactcagg Alignment from Exonerate_protein2genome ttgttatactagagattgggaggcaaccggacctttctgttggctggcaggaccgggagagacccagaaaaaattgaaggtaaagtttctataggtgattctatagctgaggtacagtgtgtactcagg Alignment from Exonerate_coding2genome ttgttatactagagattgggaggcaaccggacctttctgttggctggcaggaccgggagagacccagaaaaaattgaaggtaaagtttctataggtgattctatagctgaggtacagtgtgtactcagg Alignment from GeneWise ttgttatactagagattgggaggcaaccggacctttctgttggctggcaggaccgggagagacccagaaaaaattgaaggtaaagtttctataggtgattctatagctgaggtacagtgtgtactcagg #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaaggtGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTCGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaaggtGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTCGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTcGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTCGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTCGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTCGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTCGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTCGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAA-GACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gaatgtctccatggttcagtgactgatctgaccctcactttccttcccagTTTGACACTAATGGCGATGGCTGCATCAGTGTTGGGGAACTCCAAGCTGCACTTAAAGCCCTGCTGGGTGTACGTCTCAGTCAACAAGAAGTAGATGAAATACTCCAACGACATTGACCTCAATGGGGATGGCCTGGTTGACTTCGAAggttggtctccacctgctttgtccctttatcttgtacataggactatgaca Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAA-GACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gaatgtctccatggttcagtgactgatctgaccctcactttccttcccagTTTGACACTAATGGCGATGGCTGCATCAGTGTTGGGGAACTCCAAGCTGCACTTAAAGCCCTGCTGGGTGTACGTCTCAGTCAACAAGAAGTAGATGAAATACTCCAACGACATTGACCTCAATGGGGATGGCCTGGTTGACTTCGAAggttggtctccacctgctttgtccctttatcttgtacataggactatgaca Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAA-GACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatgtctccatggttcagtgactgatctgaccctcactttccttcccagTTTGACACTAATGGCGATGGCTGCATCAGTGTTGGGGAACTCCAAGCTGCACTTAAAGCCCTGCTGGGTGTACGTCTCAGTCAACAAGAAGTAGATGAAATACTCCAAcGACATTGACCTCAATGGGGATGGCCTGGTTGACTTCGAAGgttggtctccacctgctttgtccctttatcttgtacataggactatgaca Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAA-GACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatgtctccatggttcagtgactgatctgaccctcactttccttcccagTTTGACACTAATGGCGATGGCTGCATCAGTGTTGGGGAACTCCAAGCTGCACTTAAAGCCCTGCTGGGTGTACGTCTCAGTCAACAAGAAGTAGATGAAATACTCCAACGACATTGACCTCAATGGGGATGGCCTGGTTGACTTCGAAGgttggtctccacctgctttgtccctttatcttgtacataggactatgaca Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAA-GACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatgtctccatggttcagtgactgatctgaccctcactttccttcccagTTTGACACTAATGGCGATGGCTGCATCAGTGTTGGGGAACTCCAAGCTGCACTTAAAGCCCTGCTGGGTGTACGTCTCAGTCAACAAGAAGTAGATGAAATACTCCAACGACATTGACCTCAATGGGGATGGCCTGGTTGACTTCGAAGgttggtctccacctgctttgtccctttatcttgtacataggactatgaca Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAA-GACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatgtctccatggttcagtgactgatctgaccctcactttccttcccagTTTGACACTAATGGCGATGGCTGCATCAGTGTTGGGGAACTCCAAGCTGCACTTAAAGCCCTGCTGGGTGTACGTCTCAGTCAACAAGAAGTAGATGAAATACTCCAACGACATTGACCTCAATGGGGATGGCCTGGTTGACTTCGAAGgttggtctccacctgctttgtccctttatcttgtacataggactatgaca Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAA-GACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gaatgtctccatggttcagtgactgatctgaccctcactttccttcccagTTTGACACTAATGGCGATGGCTGCATCAGTGTTGGGGAACTCCAAGCTGCACTTAAAGCCCTGCTGGGTGTACGTCTCAGTCAACAAGAAGTAGATGAAATACTCCAACGACATTGACCTCAATGGGGATGGCCTGGTTGACTTCGAAggttggtctccacctgctttgtccctttatcttgtacataggactatgaca Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTC-CAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGAATTTGTTCGGATGATGTCTCGG gaatgtctccatggttcagtgactgatctgaccctcactttccttcccagTTTGACACTAATGGCGATGGCTGCATCAGTGTTGGGGAACTCCAAGCTGCACTTAAAGCCCTGCTGGGTGTACGTCTCAGTCAACAAGAAGTAGATGAAATACTCCAACGACATTGACCTCAATGGGGATGGCCTGGTTGACTTCGAAGGTTGGTCTCCACCTGCTTTGTCCctttatcttgtacataggactatgaca #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagggTTTTCTAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagggTTTTCTAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagGGTTTTCTAAACTACTAGACCGAGGCCTAGATGGTcGTTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagGGTTTTCTAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagGGTTTTCTAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagGGTTTTCTAAACTACTAGACCGAGGCCTAGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from Exonerate_coding2genome aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagggttttctaaactactagaccgaggcctagatggtcgttgttacctttgatctctttagggtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac Alignment from GeneWise aacatcagggcaataagcagaaactgacatttgtctttgtttaaaaacagggttttctaaactactagaccgaggcctagatggtcgttgttacctttgatctctttagggtgagaaagtactccaccccacctgatcagctaatggggggtgctgccac #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTGGGTCTGGTG-GAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATGGGAAGTTAGGGCTGGTGCGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTG-GAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATGGGAAGTTAGGGCTGGTGCGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTG-GAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATGGGAAGTTAGGGCTGGTGcGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTG-GAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATGGGAAGTTAGGGCTGGTGCGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTG-GAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATGGGAAGTTAGGGCTGGTGCGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTG-GAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATGGGAAGTTAGGGCTGGTGCGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from Exonerate_coding2genome tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagcgagacggaaatgggaagttagggctggtgcgaattcaacatcctatggaaccatatccgaaattatctggtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTG-GTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatacttaagccaaagcacttctttctctccttctcttgcagCGAGACGGAAATGGGAAGTTAGGGCTGGTGCGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagggatgagatgttctctggcatgttccctgggagcccaatggagtt #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAG-TGGAAAGGACCCTGGAGTGACag ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGCTGGAGAGGTCCTTGGAGTGACaggtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from CESAR GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAG-TGGAAAGGACCCTGGAGTGACag ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGCTGGAGAGGTCCTTGGAGTGACaggtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAG-TGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGcTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAG-TGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGCTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Pairagon GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAG-TGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGCTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAG-TGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGCTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from Exonerate_coding2genome ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacaggtaacctatcagggcccacgagtgaaccttattcgtatgtggaattcctggggtccagtagagctggagaggtccttggagtgacaggtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTG-GAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgtcctgactctgatgcaacggtccgattctgtttctgacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGCTGGAGAGGTCCTTGGAGTGACAGgtgtgtgaatgcaagcagtttcttggagatggttttatgatcaaactcct #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTG-GAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGCGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAggtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTG-GAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGCGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAggtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTG-GAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGcGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTG-GAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGCGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTG-GAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGCGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTG-GAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGCGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTG-GAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGCGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGgtagcctgtaatgtcaactctaaaccccaactgcctcaattagatgcatt Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCC-ATGTGCCCACCTGTCCGGCTGCCCTTACCAGGCGGT-- gtgtacgtgtagtagtaattgtgtagaggtcgctgtcttctttctctaagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAGCCATCCACAGTGGTGACAATGGTGCTAGGATTGTTGAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGCGAGCCAATTTGTCCACCTGTCCGCCTGCCCTTGCCAGGTAGCCTgtaatgtcaactctaaaccccaactgcctcaattagatgcatt #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTG-TTGCTGGAGGGTGGGGTCCAGAGCCCTg cacatacagacatggaggataggacagagccatgtaactttcttttccaggcTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGCTTGCTGGAGGGTGGGGTCCAAAGCCCTggtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTG-TTGCTGGAGGGTGGGGTCCAGAGCCCTg cacatacagacatggaggataggacagagccatgtaactttcttttccaggcTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGCTTGCTGGAGGGTGGGGTCCAAAGCCCTggtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTG-CTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGCTTgCTGGAGGGTGGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTG-TTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGCTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTG-TTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGCTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTG-TTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGCTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTG-TTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGCTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCT-CTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG cacatacagacatggaggataggacagagccatgtaactttcttttccagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTTCTCTCAGCACCTTCCTATCACTGCTTGCTGGAGGGTGGGGTCCAAAGCCCTGgtcaggttgtgcttctgtaataccctaccttctcctacaaaattggaaca #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTA-GAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg cgatgaggccacagcctgtgtcactgtactccccacaactccccatgcagaaTGGTACTTCATGGTCCTAGACTCCATCTTCCTTACCATCTTTGTATTACGAAGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGggtaagtgaatacaggcgatttagaatggtcagggaatacatcatttagag Alignment from CESAR aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTA-GAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg cgatgaggccacagcctgtgtcactgtactccccacaactccccatgcagaaTGGTACTTCATGGTCCTAGACTCCATCTTCCTTACCATCTTTGTATTACGAAGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGggtaagtgaatacaggcgatttagaatggtcagggaatacatcatttagag Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTA-GAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG cgatgaggccacagcctgtgtcactgtactccccacaactccccatgcagAATGGTACTTCATGGTCCTAGACTCCATCTTCCTTACCATCTTTGTATTAcGAAGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtaagtgaatacaggcgatttagaatggtcagggaatacatcatttagag Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTA-GAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG cgatgaggccacagcctgtgtcactgtactccccacaactccccatgcagAATGGTACTTCATGGTCCTAGACTCCATCTTCCTTACCATCTTTGTATTACGAAGCAG---TCAAACTTATTGCTTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtaagtgaatacaggcgatttagaatggtcagggaatacatcatttagag Alignment from Pairagon AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTA-GAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG cgatgaggccacagcctgtgtcactgtactccccacaactccccatgcagAATGGTACTTCATGGTCCTAGACTCCATCTTCCTTACCATCTTTGTATTACGAAGCAG---TCAAACTTATTGCTTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtaagtgaatacaggcgatttagaatggtcagggaatacatcatttagag Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTA-GAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG cgatgaggccacagcctgtgtcactgtactccccacaactccccatgcagAATGGTACTTCATGGTCCTAGACTCCATCTTCCTTACCATCTTTGTATTACGAAGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtaagtgaatacaggcgatttagaatggtcagggaatacatcatttagag Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTA-GAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG cgatgaggccacagcctgtgtcactgtactccccacaactccccatgcagAATGGTACTTCATGGTCCTAGACTCCATCTTCCTTACCATCTTTGTATTACGAAGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtaagtgaatacaggcgatttagaatggtcagggaatacatcatttagag Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG cgatgaggccacagcctgtgtcactgtactccccacaactccccatgcagAATGGTACTTCATGGTCCTAGACTCCATCTTCCTTACCATCTTTGTATTACGAAGCA--GTCAAACTTATTGCTTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtaagtgaatacaggcgatttagaatggtcagggaatacatcatttagag #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACC-CTCATGTTTACCTGCCTCt ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagtATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCAATCACAGCCATCCTCACCCCTCATGTTTACCTGCCACtgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACC-CTCATGTTTACCTGCCTCt ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagtATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCAATCACAGCCATCCTCACCCCTCATGTTTACCTGCCACtgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACC-CTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCAATCACAGCCATCCTCACCcCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACC-CTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCAATCACAGCCATCCTCACCCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCA-CCCTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCAATCACAGCCATCCTCACCCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACC-CTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCAATCACAGCCATCCTCACCCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACC-CTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCAATCACAGCCATCCTCACCCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACC-CTCATGTTTACCTGCCTCT ccacttgcttcaatgctaccttgactttctggtgttgctatttcttttagTATCTTGACTAGAGTCCAGGAAGTAGCTGGTACCCTTAGTGGGTCCTTACCATCAATCACAGCCATCCTCACCCCTCATGTTTACCTGCCACTgttagttgtacaacagaggttgggcacaattattctaaataggttagatg #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGAC-TCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagtcCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATCTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaagataacctaaggctacagtttttctattatctctcctcagctGCCT Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGAC-TCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagtcCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATCTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaagataacctaaggctacagtattttgttacttttaaactagctGCCT Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGAC-TCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATcTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacagtttttctattatctctcctcagCTGCCT Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGA-CTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATCTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacagtttttctattatctctcctcagCTGCCT Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGA-CTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATCTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacagtttttctattatctctcctcagCTGCCT Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGAC-TCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATCTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacagtttttctattatctctcctcagCTGCCT Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGAC-TCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATCTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacagtttttctattatctctcctcagCTGCCT Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGAC-TCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATCTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacagtttttctattatctctcctcagCTGCCT #### Catsper1_ID930_7 --> 2 - 2 Original Alignment CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCaa CCCAAggtgagttaacctaaggctacagtattttgttacttttaaactagctGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTACCTTCCTCaagtgagtcattgaactgttccaataaccacccaccaagcacttacagtcct Alignment from CESAR CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCaa CCCAAggtaagataacctaaggctacagtattttgttacttttaaactagctGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTACCTTCCTCaagtgagtcattgaactgttccaataaccacccaccaagcacttacagtcct Alignment from Spaln_aa2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtgagttaacctaaggctacagtattttgttacttttaaactagCTGCCTGGTACATCATACCAATCCTCATGATCcTACATTGTTATCCAATACTTTACCTTCCTCAAgtgagtcattgaactgttccaataaccacccaccaagcacttacagtcct Alignment from Spaln_nt2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtgagttaacctaaggctacagtattttgttacttttaaactagCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTACCTTCCTCAAgtgagtcattgaactgttccaataaccacccaccaagcacttacagtcct Alignment from Pairagon CCCAAGG--------------------------------------------CGCCTGGTACATCATACCGATCCTCATGAT-TTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGGTGAGTTAACCTAAGGCTACAGTATTTTGTTACTTTTAAACTAGCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTACCTTCCTCAAgtgagtcattgaactgttccaataaccacccaccaagcacttacagtcct Alignment from Exonerate_protein2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtgagttaacctaaggctacagtattttgttacttttaaactagCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTACCTTCCTCAAgtgagtcattgaactgttccaataaccacccaccaagcacttacagtcct Alignment from Exonerate_coding2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtgagttaacctaaggctacagtattttgttacttttaaactagCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTACCTTCCTCAAgtgagtcattgaactgttccaataaccacccaccaagcacttacagtcct Alignment from GeneWise CCCAAG GCGCCTGGTACATCATACCGATCCTCATG-ATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtgagttaacctaaggctacagtattttgttacttttaaactagCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTACCTTCCTCAAgtgagtcattgaactgttccaataaccacccaccaagcacttacagtcct #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCG-TTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cattcctatactcagtcccatttaggcaggtcaaatattcatccttgcagcCTAGTGATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCCTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAAgtgagtacgacattggagggtagataacttcccgatgtgctgctcaaagg Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATG-GCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cattcctatactcagtcccatttaggcaggtcaaatattcatccttgcagcCTAGTGATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCCTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAAgtgagtacgacattggagggtagataacttcccgatgtgctgctcaaagg Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATG-GCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cattcctatactcagtcccatttaggcaggtcaaatattcatccttgcagCCTAGTGATTGCAGCTCTAGTAGACAACTTCCTAATGgTCCCTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAAgtgagtacgacattggagggtagataacttcccgatgtgctgctcaaagg Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGG-CGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cattcctatactcagtcccatttaggcaggtcaaatattcatccttgcagCCTAGTGATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCCTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAAgtgagtacgacattggagggtagataacttcccgatgtgctgctcaaagg Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGG-CGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cattcctatactcagtcccatttaggcaggtcaaatattcatccttgcagCCTAGTGATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCCTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAAgtgagtacgacattggagggtagataacttcccgatgtgctgctcaaagg Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATG-GCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cattcctatactcagtcccatttaggcaggtcaaatattcatccttgcagCCTAGTGATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCCTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAAgtgagtacgacattggagggtagataacttcccgatgtgctgctcaaagg Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATG-GCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cattcctatactcagtcccatttaggcaggtcaaatattcatccttgcagCCTAGTGATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCCTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAAgtgagtacgacattggagggtagataacttcccgatgtgctgctcaaagg Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATG-GCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG cattcctatactcagtcccatttaggcaggtcaaatattcatccttgcagCCTAGTGATTGCAGCTCTAGTAGACAACTTCCTAATGGTCCCTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAAgtgagtacgacattggagggtagataacttcccgatgtgctgctcaaagg #### Cbwd1_ID5353_14 --> 0 - 1 Original Alignment GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGG-AAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGCAAGGATGATGCAGCAAGAGCATGTCAGCTAGTTTTCATTggtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from CESAR GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGG-AAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGCAAGGATGATGCAGCAAGAGCATGTCAGCTAGTTTTCATTggtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Spaln_aa2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGG-AAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGcAAGGATGATGCAGCAAGAGCATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Spaln_nt2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGG-AAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGCAAGGATGATGCAGCAAGAGCATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Pairagon GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGG-AAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGCAAGGATGATGCAGCAAGAGCATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Exonerate_protein2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGG-AAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGCAAGGATGATGCAGCAAGAGCATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from Exonerate_coding2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGG-AAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGCAAGGATGATGCAGCAAGAGCATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa Alignment from GeneWise GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGG-AAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG aattatgtagtcctaagttgacaactgatattgtattgtatttcttttagGGCCTGGTATCTATCAAAGTCAAGCCACATCAAATGATTGTGCAAGGTATCCATGATTTGTATGACTTGGAAGAAAGCCTTGTGAACTGGCAAGGATGATGCAGCAAGAGCATGTCAGCTAGTTTTCATTGgtatgaaacactaatgtactactgaatgtactactgggttctgtgtctaa #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCC-CGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagggTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAggtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCC-CGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagggTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAggtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCC-CGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTcCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAGC---ACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTC-CCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAG---CACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTC-CCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCAAG---CACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCC-CGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCA---AGCACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCC-CGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCA---AGCACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCC-CGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacctcgcctgatccatacactttctttctcattctctgcagGGTCATCATCACCAGCACCCATGCACCAAATTGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGGAGTCTCAGTTCTCCAGTTCCCTGTTGGACGAAGTCCAGCATCATTCAGTCCA---AGCACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtgagtgatgttttactatgatttgagttgccattgttttaggtggtcag #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCT-GGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttaggAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTCGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAggtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCT-GGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttaggAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTCGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAggtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCT-GGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTcGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCT-GGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTCGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCT-GGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTCGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCT-GGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTCGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Exonerate_coding2genome cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttaggaggggcagctggttggcagaaaaggtcagaaggctcattcggccccggcgtgagggggccctccatggggggcctcgccttggggctgatggggctcggcagtactgaaagtttgggaggccctctagagactgagttgccagaaggcagggaggttgatgggacaggtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGG-GCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTCGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment ct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAG-AAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa ctgtaagtccacttagggccaggttaaggctgacgggtggtcccctccaggGACCAACTCAATGGCTTGCGCCAACAGAAACAGCAAGCTGGTGGAT---ATCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTaagtcaggtagcaccttatgtatcatgttagtattttgctctgttccacggc Alignment from CESAR ct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAG-AAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa ctgtgagtccacttagggccaggttaaggctgacgggtggtcccctccaggGACCAACTCAATGGCTTGCGCCAACAGAAACAGCAAGCTGGTGGAT---ATCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTaagtcaggtagcaccttatgtatcatgttagtattttgctctgttccacggc Alignment from Spaln_aa2Genome CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAG-AAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtaagtccacttagggccaggttaaggctgacgggtggtcccctccagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGcAAGCTGGTGGAT---ATCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgtcaggtagcaccttatgtatcatgttagtattttgctctgttccacggc Alignment from Spaln_nt2Genome CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAG-AAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtaagtccacttagggccaggttaaggctgacgggtggtcccctccagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGCAAGCTGGTGG---ATATCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgtcaggtagcaccttatgtatcatgttagtattttgctctgttccacggc Alignment from Pairagon CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAG-AAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtaagtccacttagggccaggttaaggctgacgggtggtcccctccagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGCAAGCTGGTGG---ATATCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgtcaggtagcaccttatgtatcatgttagtattttgctctgttccacggc Alignment from Exonerate_protein2genome CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAG-AAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtaagtccacttagggccaggttaaggctgacgggtggtcccctccagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGCAAGCTGGTGGAT---ATCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgtcaggtagcaccttatgtatcatgttagtattttgctctgttccacggc Alignment from Exonerate_coding2genome ctgtaagtccacttagggccaggttaaggctgacgggtggtcccctccagggaccaactcaatggcttgcgccaacagaaacagcaagctggtggatatcatggaccagtaccgcgtagtacagcctgggccgctaccccatactaagtcaggtagcaccttatgtatcatgttagtattttgctctgttccacggc Alignment from GeneWise CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAG-AAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtaagtccacttagggccaggttaaggctgacgggtggtcccctccagGGACCAACTCAATGGCTTGCGCCAACAGAAACAGCAAGCTGGTGGAT---ATCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgtcaggtagcaccttatgtatcatgttagtattttgctctgttccacggc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAG-CGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGTACAAACAGGGAGTTGCAGGAGCCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACctgtgagtccacttagggccaggttaagagaacgcatctccctgtcccaggG Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAG-CGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGTACAAACAGGGAGTTGCAGGAGCCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACctgtgagtccacttagggccaggttaaggctgacgggtggtcccctccaggG Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAG-CGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGTACAAACAGGGAGTTGCAGGAGcCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagagaacgcatctccctgtcccagGG Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGC-GCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGTACAAACAGGGAGTTGCAGGAGCCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagagaacgcatctccctgtcccagGG Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAG-CGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGTACAAACAGGGAGTTGCAGGAGCCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagagaacgcatctccctgtcccagGG Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAG-CGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGTACAAACAGGGAGTTGCAGGAGCCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagagaacgcatctccctgtcccagGG Alignment from Exonerate_coding2genome ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagcttttaacacagcttcatacagtacaaaaagaggagaataggcagcttttagcagaggtgaaggctttaagtcgtacaaacagggagttgcaggagccgtagtttggagagtgaccctctgcaccgtgagcagccagaatacctgtgagtccacttagggccaggttaagagaacgcatctccctgtcccaggg Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTG-CTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctgatgttcaacactgaaacttgcttccttgcagCTTTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGTACAAACAGGGAGTTGCAGGAGCCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAATACCTgtgagtccacttagggccaggttaagagaacgcatctccctgtcccagGG #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaatatggtctggacttgcccttcacagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGACAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagaatgggctgtggtgtgcacttctataacaatttattgactttcca Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaatatggtctggacttgcccttcacagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGACAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagaatgggctgtggtgtgcacttctataacaatttattgactttcca Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaatatggtctggacttgcccttcacagAATGCCACATTGGTGGCAGAGAAAGCGcGCTCTCCAGGGACAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagaatgggctgtggtgtgcacttctataacaatttattgactttcca Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaatatggtctggacttgcccttcacagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGACAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagaatgggctgtggtgtgcacttctataacaatttattgactttcca Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaatatggtctggacttgcccttcacagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGACAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagaatgggctgtggtgtgcacttctataacaatttattgactttcca Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaatatggtctggacttgcccttcacagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGACAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagaatgggctgtggtgtgcacttctataacaatttattgactttcca Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaatatggtctggacttgcccttcacagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGACAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagaatgggctgtggtgtgcacttctataacaatttattgactttcca Alignment from GeneWise --------------------------------------------------AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG GAGGTAATAGGGCTCACAACATTAATATGGTCTGGACTTGCCCTTCACAGAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGACAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagaatgggctgtggtgtgcacttctataacaatttattgactttcca #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTGGAG-CAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttgctatgtcctcaactccatggttattcttcaggTATCAGCATCTGGAGCCAACGTCTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTAAGGAGCAGGCACTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATCGAGgtaagcctgcccaactcgaaagactactggcactggtaattcattagtta Alignment from CESAR gTACCGGCATCTGGAG-CAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttgctatgtcctcaactccatggttattcttcaggTATCAGCATCTGGAGCCAACGTCTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTAAGGAGCAGGCACTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATCGAGgtaagcctgcccaactcgaaagactactggcactggtaattcattagtta Alignment from Spaln_aa2Genome GTACCGGCATCTGGAG-CAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttgctatgtcctcaactccatggttattcttcagGTATCAGCATCTGGAGcCAACGTCTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTAAGGAGCAGGCACTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATCGAGgtaagcctgcccaactcgaaagactactggcactggtaattcattagtta Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGC-AGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttgctatgtcctcaactccatggttattcttcagGTATCAGCATCTGGAGCCAACGTCTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTAAGGAGCAGGCACTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATCGAGgtaagcctgcccaactcgaaagactactggcactggtaattcattagtta Alignment from Pairagon GTACCGGCATCTGGAG-CAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttgctatgtcctcaactccatggttattcttcagGTATCAGCATCTGGAGCCAACGTCTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTAAGGAGCAGGCACTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATCGAGgtaagcctgcccaactcgaaagactactggcactggtaattcattagtta Alignment from Exonerate_protein2genome GTACCGGCATCTGGAG-CAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttgctatgtcctcaactccatggttattcttcagGTATCAGCATCTGGAGCCAACGTCTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTAAGGAGCAGGCACTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATCGAGgtaagcctgcccaactcgaaagactactggcactggtaattcattagtta Alignment from Exonerate_coding2genome GTACCGGCATCTGGAG-CAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttgctatgtcctcaactccatggttattcttcagGTATCAGCATCTGGAGCCAACGTCTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTAAGGAGCAGGCACTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATCGAGgtaagcctgcccaactcgaaagactactggcactggtaattcattagtta Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagcagtaaagtctagttgctatgtcctcaactccatggttattcttcaggtatcagCATC------TGGAGCCAACGTCTTGAAGCTGAGTTGCAAGCAGCATCTGCCAGTAAGGAGCAGGCACTGATGGAGCTCAAGGTGCAAGTCTTGCAGTTGGAGGAAGAGCTCATCGAGgtaagcctgcccaactcgaaagactactggcactggtaattcattagtta #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAGAA---GAGGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTCCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTA---GAAGAGGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTCCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAGAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTCCGGcCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGC-GCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATT---AGAAGAGGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTCCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATT---AGAAGAGGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTCCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTA---GAAGAGGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTCCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from Exonerate_coding2genome ccgttaccctttgtcccctagctcactgctttctctttctttcccattagactcaggcattgtctgcccaagcaaagtgcaccgaactctgccgtgaagaagcagaggcattagaagaggcaggtcacctgccccgcctgcaggaagatctccggccgatgtcgtgagaagcttcaggcagcagaagtcttcaagggtcatttggaagtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ccgttaccctttgtcccctagctcactgctttctctttctttcccattagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAGAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTCCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAAgtgaggtgggccacacatgagccagagaaatgggtaatgtcgatgctgct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAG-ACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTGTGAACCCTTCTCAggtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAG-ACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTGTGAACCCTTCTCAggtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACA-ATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCtACAGGGTGTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACA-ATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTGTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAG----ACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACA---GGGTGTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAG-ACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTGTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from Exonerate_coding2genome acccagtagcacctagcatggatacatttggcttctccttgaccttgcaggaggagctacagcttttaatcttatcagcaccaccagacctccagccctacagggtgtgaacccttctcaggtaagggttctagcctcttctaccatttgactctcttatataccctcatc Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAG-ACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagcatggatacatttggcttctccttgaccttgcagGAGGAGCTACAGCTTTTAATCTTATCAGCACCACCAGACCTCCAGCCCTACAGGGTGTGAACCCTTCTCAGgtaagggttctagcctcttctaccatttgactctcttatataccctcatc #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAA-GAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgtgcctgcctccctacaggccttggatctgcccttcagGCTTTAGGTTTAGCTGGCCTAGTGGGGGATGCAGAACAAGTCAGCAGGGGGAACTGAAGAGGATGAGGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTTCTTCGGGTTTTGGATATTatgcaagagatacagtgaaatttagctatggatgttggccatgaatggtagg Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAA-TCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgtgcctgcctccctacaggccttggatctgcccttcagGCTTTAGGTTTAGCTGGCCTAGTGGGGGATGCAGAACAAGTCAGCAGGGGGAACTGAAGAGGATGAGGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTTCTTCGGGTTTTGGATATTatgcaagagatacagtgaaatttagctatggatgttggccatgaatggtagg Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAA-TCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgcctgcctccctacaggccttggatctgcccttcagGCTTTAGGTTTAGCTGGCCTAGTGGGGGATGCAGAACAAgTCAGCAGGGGGAACTGAAGAGGATGAGGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTTCTTCGGGTTTTGGATATTATgcaagagatacagtgaaatttagctatggatgttggccatgaatggtagg Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAA-TCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgcctgcctccctacaggccttggatctgcccttcagGCTTTAGGTTTAGCTGGCCTAGTGGGGGATGCAGAACAAGTCAGCAGGGGGAACTGAAGAGGATGAGGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTTCTTCGGGTTTTGGATATTATgcaagagatacagtgaaatttagctatggatgttggccatgaatggtagg Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAA-TCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgcctgcctccctacaggccttggatctgcccttcagGCTTTAGGTTTAGCTGGCCTAGTGGGGGATGCAGAACAAGTCAGCAGGGGGAACTGAAGAGGATGAGGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTTCTTCGGGTTTTGGATATTATgcaagagatacagtgaaatttagctatggatgttggccatgaatggtagg Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAA-TCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgcctgcctccctacaggccttggatctgcccttcagGCTTTAGGTTTAGCTGGCCTAGTGGGGGATGCAGAACAAGTCAGCAGGGGGAACTGAAGAGGATGAGGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTTCTTCGGGTTTTGGATATTATgcaagagatacagtgaaatttagctatggatgttggccatgaatggtagg Alignment from Exonerate_coding2genome gcctggtattgtgtgcctgcctccctacaggccttggatctgcccttcaggctttaggtttagctggcctagtgggggatgcagaacaagtcagcagggggaactgaagaggatgaggaggaagaggaggaagaaggagccctttgtacagaaaaaagatccctacggttgattgatggagccttacttcttcgggttttggatattatgcaagagatacagtgaaatttagctatggatgttggccatgaatggtagg Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAA-GAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATC---------ATT-- gcctggtattgtgtgcctgcctccctacaggccttggatctgcccttcagGCTTTAGGTTTAGCTGGCCTAGTGGGGGATGCAGAACAAGTCAGCAGGGGGAACTGAAGAGGATGAGGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTTCTTCGGGTTTTGGATATTATGCAAGAGATACAgtgaaatttagctatggatgttggccatgaatggtagg #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACC-ACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtatgtgacagttctgtctctctttcactgcagaaCCCCAGAGAACGGCTCCTCCGCCCACAACTCACTCCACCCACCACTGTACCGGAACCCACAggtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from CESAR GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACC-ACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtaagcgacagttctgtctctctttcactgcagaaCCCCAGAGAACGGCTCCTCCGCCCACAACTCACTCCACCCACCACTGTACCGGAACCCACAggtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Spaln_aa2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACC-ACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtatgtgacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTcACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Spaln_nt2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAAC-CACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtatgtgacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTCACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Pairagon GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAAC-CACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtatgtgacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTCACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Exonerate_protein2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACC-ACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtatgtgacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTCACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Exonerate_coding2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACC-ACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtatgtgacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTCACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from GeneWise GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACC-ACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtatgtgacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTCACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTC-AACAACAATGGCATG ggacacacacatacttacaccaaagaactctagtccttcctttcctccagaGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCACCTGCCTACGCCTCCAACAACAATGCCAAGgtgagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTC-AACAACAATGGCATG ggacacacacatacttacaccaaagaactctagtccttcctttcctccagaGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCACCTGCCTACGCCTCCAACAACAATGCCAAGgtgagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Spaln_aa2Genome -GATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTC-AACAACAATGGCATG ggacacacacatacttacaccaaagaactctagtccttcctttcctccagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCACCTGCCTACGCCTCcAACAACAATGCCAAGgtgagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Spaln_nt2Genome GGGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTC-AACAACAATGGCATG ggacacacacatacttacaccaaagaactctagtccttcctttcctccagAGATGTGAAG-CCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCACCTGCCTACGCCTCCAACAACAATGCCAAGgtgagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCT-CAACAACAATGGCATG ggacacacacatacttacaccaaagaactctagtccttcctttcctccagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCACCTGCCTACGCCTCCAACAACAATGCCAAGgtgagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTC-AACAACAATGGCATG ggacacacacatacttacaccaaagaactctagtccttcctttcctccagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCACCTGCCTACGCCTCCAACAACAATGCCAAGgtgagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTC-AACAACAATGGCATG ggacacacacatacttacaccaaagaactctagtccttcctttcctccagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCACCTGCCTACGCCTCCAACAACAATGCCAAGgtgagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGT-CTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactctagtccttcctttcctccagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCAGCTTTGCTTGGCTGACTTTGGCACCTGCCTACGCCTCCAACAACAATGCCAAGgtgagtaaaccacctagaaattcatagataagtataaagacatttagtta #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCAT-GCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagagACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATCGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGAT-GGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagagACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATCGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGAT-GGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATgGGCCTGATCGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCAT-GCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATCGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCAT-GCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATCGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGAT-GGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATCGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGAT-GGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATCGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTC-CATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATCGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc #### Cdc42bpg_ID1584_14 --> 0 - 0 Original Alignment CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG aagcaaagaaaatcatggtggtatctcccctgcacactcctcacctctagCTTGAAGGACAGGTGACGACCCTAAGTGATGTGGTGACTCGGCTCCAGGGACGGTGTAAAGAAGAACTCTTCA---GCAAAGgtaagaatagtgggtgttcttcacacagcagtctcctacctaaaatcctt Alignment from CESAR CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aagcaaagaaaatcatggtggtatctcccctgcacactcctcacctctagCTTGAAGGACAGGTGACGACCCTAAGTGATGTGGTGACTCGGCTCCAGGGACGGTGTAAAGAAGAA--CTCTTCAGCAAAGgtaagaatagtgggtgttcttcacacagcagtctcctacctaaaatcctt Alignment from Spaln_aa2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aagcaaagaaaatcatggtggtatctcccctgcacactcctcacctctagCTTGAAGGACAGGTGACGACCCTAAGTGATGTGGTGACTCGGCTCCAGGGACGGTGTAAAGAAGAAC--TCTTCAGCAAAGgtaagaatagtgggtgttcttcacacagcagtctcctacctaaaatcctt Alignment from Spaln_nt2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG aagcaaagaaaatcatggtggtatctcccctgcacactcctcacctctagCTTGAAGGACAGGTGACGACCCTAAGTGATGTGGTGACTCGGCTCCAGGGACGGTGTAAAGAAGAACTCTTCA---GCAAAGgtaagaatagtgggtgttcttcacacagcagtctcctacctaaaatcctt Alignment from Pairagon CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG aagcaaagaaaatcatggtggtatctcccctgcacactcctcacctctagCTTGAAGGACAGGTGACGACCCTAAGTGATGTGGTGACTCGGCTCCAGGGACGGTGTAAAGAAGAACTCTTCA---GCAAAGgtaagaatagtgggtgttcttcacacagcagtctcctacctaaaatcctt Alignment from Exonerate_protein2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG aagcaaagaaaatcatggtggtatctcccctgcacactcctcacctctagCTTGAAGGACAGGTGACGACCCTAAGTGATGTGGTGACTCGGCTCCAGGGACGGTGTAAAGAAGAACTCTTCA---GCAAAGgtaagaatagtgggtgttcttcacacagcagtctcctacctaaaatcctt Alignment from Exonerate_coding2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG aagcaaagaaaatcatggtggtatctcccctgcacactcctcacctctagCTTGAAGGACAGGTGACGACCCTAAGTGATGTGGTGACTCGGCTCCAGGGACGGTGTAAAGAAGAACTCTTCA---GCAAAGgtaagaatagtgggtgttcttcacacagcagtctcctacctaaaatcctt Alignment from GeneWise CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aagcaaagaaaatcatggtggtatctcccctgcacactcctcacctctagCTTGAAGGACAGGTGACGACCCTAAGTGATGTGGTGACTCGGCTCCAGGGACGGTGTAAAGAAGAAC--TCTTCAGCAAAGgtaagaatagtgggtgttcttcacacagcagtctcctacctaaaatcctt #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAA-GTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAAACCCAACTGAGGAAGGAACGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAgggtatatgcatggtacttgctgtcaggaaggggcaaaatatcgtttgtctt Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAA-GTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAAACCCAACTGAGGAAGGAACGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAgggtatatgcatggtacttgctgtcaggaaggggcaaaatacacccagtacc Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAA-GTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAAACCCAACTGAGGAAGGAAcGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatcgtttgtctt Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAA-GTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAAACCCAACTGAGGAAGGAACGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatcgtttgtctt Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAA-GTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAAACCCAACTGAGGAAGGAACGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatcgtttgtctt Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAA-GTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAAACCCAACTGAGGAAGGAACGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatcgtttgtctt Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAA-GTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAAACCCAACTGAGGAAGGAACGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatcgtttgtctt Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAA-GTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG tcaagcctgacttctcacaccagaccctacctagtgtgctgtccccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAAACCCAACTGAGGAAGGAACGTAGTAGCCCTAAGGGAGCAACTGGTGCATGCCTGCAGCCAAGGgtatatgcatggtacttgctgtcaggaaggggcaaaatatcgtttgtctt #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAG-ATCGCTGACATCCTCAGCtg gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGCATTGCTGACATCCTCAGCtggtgagactacacagctgggtggcaccattgatactgtgagcccgttttta Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAG-ATCGCTGACATCCTCAGCtg gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGCATTGCTGACATCCTCAGCtggtgagactacacagctgggtggcaccattgatactgtgagccctttctct Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAG-ATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGcATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagcccgttttta Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAG-ATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGCATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagcccgttttta Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAG-ATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGCATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagcccgttttta Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAG-ATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGCATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagcccgttttta Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAG-ATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGCATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagcccgttttta Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAG-ATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGCATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagcccgttttta #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCT-GGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTCGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCT-GGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTCGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCT-GGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTcGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTG-GAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTCGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCT-GGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTCGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCT-GGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTCGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCT-GGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTCGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGG-TCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTCGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga #### Cdc42bpg_ID1595_25 --> 2 - 0 Original Alignment ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTG-CACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC atattatttaatgcatatacttgtgggtactccttgcccctctcccccagcaTGTGGTTATTTCTGTCATTCAGCCTGCGCATCACAAACCCCTCCTTGCCCCGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCCACCCTGAAAAGGGCACAGAGACAGCCTATGAGGGCTTTTTGTCAgtaagttgagggggctgtgctctgatcttgatctcgcagGTACGACAGCC Alignment from CESAR ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTG-CACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC atattatttaatgcatatacttgtgggtactccttgcccctctcccccagcaTGTGGTTATTTCTGTCATTCAGCCTGCGCATCACAAACCCCTCCTTGCCCCGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCCACCCTGAAAAGGGCACAGAGACAGCCTATGAGGGCTTTTTGTCAgtaagttgagggggctggagggataccctcccatttcagGTACGACAGCC Alignment from Spaln_aa2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTG-CACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC atattatttaatgcatatacttgtgggtactccttgcccctctcccccagCATGTGGTTATTTCTGTCATTCAGCCTGCGCATCACAAACCCCTCCTTGCCCCGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGcCACCCTGAAAAGGGCACAGAGACAGCCTATGAGGGCTTTTTGTCAgtaagttgagggggctgtgctctgatcttgatctcgcagGTACGACAGCC Alignment from Spaln_nt2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTG-CACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC atattatttaatgcatatacttgtgggtactccttgcccctctcccccagCATGTGGTTATTTCTGTCATTCAGCCTGCGCATCACAAACCCCTCCTTGCCCCGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCCACCCTGAAAAGGGCACAGAGACAGCCTATGAGGGCTTTTTGTCAgtaagttgagggggctgtgctctgatcttgatctcgcagGTACGACAGCC Alignment from Pairagon CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTG-CACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC atattatttaatgcatatacttgtgggtactccttgcccctctcccccagCATGTGGTTATTTCTGTCATTCAGCCTGCGCATCACAAACCCCTCCTTGCCCCGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCCACCCTGAAAAGGGCACAGAGACAGCCTATGAGGGCTTTTTGTCAgtaagttgagggggctgtgctctgatcttgatctcgcagGTACGACAGCC Alignment from Exonerate_protein2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTG-CACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC atattatttaatgcatatacttgtgggtactccttgcccctctcccccagCATGTGGTTATTTCTGTCATTCAGCCTGCGCATCACAAACCCCTCCTTGCCCCGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCCACCCTGAAAAGGGCACAGAGACAGCCTATGAGGGCTTTTTGTCAgtaagttgagggggctgtgctctgatcttgatctcgcagGTACGACAGCC Alignment from Exonerate_coding2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTG-CACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC atattatttaatgcatatacttgtgggtactccttgcccctctcccccagCATGTGGTTATTTCTGTCATTCAGCCTGCGCATCACAAACCCCTCCTTGCCCCGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCCACCCTGAAAAGGGCACAGAGACAGCCTATGAGGGCTTTTTGTCAgtaagttgagggggctgtgctctgatcttgatctcgcagGTACGACAGCC Alignment from GeneWise CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGG-GTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC atattatttaatgcatatacttgtgggtactccttgcccctctcccccagCATGTGGTTATTTCTGTCATTCAGCCTGCGCATCACAAACCCCTCCTTGCCCCGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCCACCCTGAAAAGGGCACAGAGACAGCCTATGAGGGCTTTTTGTCAgtaagttgagggggctgtgctctgatcttgatctcgcagGTACGACAGCC #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTC-AGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTTTGTCAgtatgctgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAaggtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from CESAR GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTC-AGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTTTGTCAgtaagttgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAaggtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Spaln_aa2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTC-AGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtatgctgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCcAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Spaln_nt2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTC-AGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtatgctgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Pairagon GCTTCCTGTC---------------------------------------GGTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCT-CAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAGTATGCTGAGGGGGCTGGAGGGATACCCTCCCATTTCAGGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Exonerate_protein2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTC-AGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtatgctgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Exonerate_coding2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTC-AGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtatgctgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from GeneWise GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTC-AGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtatgctgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCC-AAGGACCTGCCACGTATCTTCAGG tagggagtctacagcagggtggtctgtcttttgcatttttctttccccaggGACCCCCAATTTTCAGCGACTCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCACAAGGACCTGCCACGCATCTTCAGGgtaaggagactaggtgatataggatatagcctccacaggcttgagcttgt Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCC-AAGGACCTGCCACGTATCTTCAGG tagggagtctacagcagggtggtctgtcttttgcatttttctttccccaggGACCCCCAATTTTCAGCGACTCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCACAAGGACCTGCCACGCATCTTCAGGgtaaggagactaggtgatataggatatagcctccacaggcttgagcttgt Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCC-AAGGACCTGCCACGTATCTTCAGG tagggagtctacagcagggtggtctgtcttttgcatttttctttccccagGGACCCCCAATTTTCAGCGACTCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAcAAGGACCTGCCACGCATCTTCAGGgtaaggagactaggtgatataggatatagcctccacaggcttgagcttgt Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATC-CAAGGACCTGCCACGTATCTTCAGG tagggagtctacagcagggtggtctgtcttttgcatttttctttccccagGGACCCCCAATTTTCAGCGACTCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCACAAGGACCTGCCACGCATCTTCAGGgtaaggagactaggtgatataggatatagcctccacaggcttgagcttgt Alignment from Pairagon GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATC-CAAGGACCTGCCACGTATCTTCAGG tagggagtctacagcagggtggtctgtcttttgcatttttctttccccagGGACCCCCAATTTTCAGCGACTCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCACAAGGACCTGCCACGCATCTTCAGGgtaaggagactaggtgatataggatatagcctccacaggcttgagcttgt Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCC-AAGGACCTGCCACGTATCTTCAGG tagggagtctacagcagggtggtctgtcttttgcatttttctttccccagGGACCCCCAATTTTCAGCGACTCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCACAAGGACCTGCCACGCATCTTCAGGgtaaggagactaggtgatataggatatagcctccacaggcttgagcttgt Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCC-AAGGACCTGCCACGTATCTTCAGG tagggagtctacagcagggtggtctgtcttttgcatttttctttccccagGGACCCCCAATTTTCAGCGACTCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCACAAGGACCTGCCACGCATCTTCAGGgtaaggagactaggtgatataggatatagcctccacaggcttgagcttgt Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAA-TCCAAGGACCTGCCACGTATCTTCAGG tagggagtctacagcagggtggtctgtcttttgcatttttctttccccagGGACCCCCAATTTTCAGCGACTCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCACAAGGACCTGCCACGCATCTTCAGGgtaaggagactaggtgatataggatatagcctccacaggcttgagcttgt #### Cdc42bpg_ID1601_31 --> 2 - 0 Original Alignment gtTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGG-GTACAGACTGTGCCGCTCAAGAAG atggggaactcacttgtgcctatacaccaatattttcttttcctacttaggtTACACAGCGCCCTACTTAACTTACCTAACTGTGTTCAGTGAAAATACCCTTGATGTCTTTGATGTGAGGAGAGCAGAATGGCGTCCAGACTGTACCACTCAAGAAGgtaatggttagtgctggttgtcaaattggtacattgagtgggctttcatt Alignment from CESAR gtTACACAGCACCCTAC---------CTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGG-GTACAGACTGTGCCGCTCAAGAAG atggggaactcacttgtgcctatacaccaatattttcttttcctacttaggtTACACAGCGCCCTACTTAACTTACCTAACTGTGTTCAGTGAAAATACCCTTGATGTCTTTGATGTGAGGAGAGCAGAATGGCGTCCAGACTGTACCACTCAAGAAGgtaatggttagtgctggttgtcaaattggtacattgagtggggacatgtc Alignment from Spaln_aa2Genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGG-GTACAGACTGTGCCGCTCAAGAAG atggggaactcacttgtgcctatacaccaatattttcttttcctacttagGTTACACAGCGCCCTACTTAACTTACCTAACTGTGTTCAGTGAAAATACCCTTGATGTCTTTGATGTGAGGAGAGCAGAATGGcGTCCAGACTGTACCACTCAAGAAGgtaatggttagtgctggttgtcaaattggtacattgagtgggctttcatt Alignment from Spaln_nt2Genome GTTACACAGCACCCTAC---------CTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGG-GTACAGACTGTGCCGCTCAAGAAG atggggaactcacttgtgcctatacaccaatattttcttttcctacttagGTTACACAGCGCCCTACTTAACTTACCTAACTGTGTTCAGTGAAAATACCCTTGATGTCTTTGATGTGAGGAGAGCAGAATGGCGTCCAGACTGTACCACTCAAGAAGgtaatggttagtgctggttgtcaaattggtacattgagtgggctttcatt Alignment from Pairagon GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGG-GTACAGACTGTGCCGCTCAAG----------------------------------------------------- atggggaactcacttgtgcctatacaccaatattttcttttcctacttagGTTACACAGCGCCCTACTTAACTTACCTAACTGTGTTCAGTGAAAATACCCTTGATGTCTTTGATGTGAGGAGAGCAGAATGGCGTCCAGACTGTACCACTCAAGAAGGTAATGGTTAGTGCTGGTTGTCAAATTGGTACATTGAGTGGGCTTTCATT Alignment from Exonerate_protein2genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGG-GTACAGACTGTGCCGCTCAAGAAG atggggaactcacttgtgcctatacaccaatattttcttttcctacttagGTTACACAGCGCCCTACTTAACTTACCTAACTGTGTTCAGTGAAAATACCCTTGATGTCTTTGATGTGAGGAGAGCAGAATGGCGTCCAGACTGTACCACTCAAGAAGgtaatggttagtgctggttgtcaaattggtacattgagtgggctttcatt Alignment from Exonerate_coding2genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGG-GTACAGACTGTGCCGCTCAAGAAG atggggaactcacttgtgcctatacaccaatattttcttttcctacttagGTTACACAGCGCCCTACTTAACTTACCTAACTGTGTTCAGTGAAAATACCCTTGATGTCTTTGATGTGAGGAGAGCAGAATGGCGTCCAGACTGTACCACTCAAGAAGgtaatggttagtgctggttgtcaaattggtacattgagtgggctttcatt Alignment from GeneWise GTTACACAGCACCCTAC---------CTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGG-GTACAGACTGTGCCGCTCAAGAAG atggggaactcacttgtgcctatacaccaatattttcttttcctacttagGTTACACAGCGCCCTACTTAACTTACCTAACTGTGTTCAGTGAAAATACCCTTGATGTCTTTGATGTGAGGAGAGCAGAATGGCGTCCAGACTGTACCACTCAAGAAGgtaatggttagtgctggttgtcaaattggtacattgagtgggctttcatt #### Cdc42bpg_ID1602_32 --> 0 - 1 Original Alignment GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg tggttgtcaaattggtacattgagtggggacatgtcattctcctctgtagGTGAGACCCCTCAATCCACGAAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAggtaaaagtacacaacgccaactggctgttacagctataagtgaacagcta Alignment from CESAR GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg tggttgtcaaattggtacattgagtggggacatgtcattctcctctgtagGTGAGACCCCTCAATCCACGAAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAggtaaaagtacacaacgccaactggctgttacagctataagtgaacagcta Alignment from Spaln_aa2Genome GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattggtacattgagtggggacatgtcattctcctctgtagGTGAGACCCCTCAATCCAcGAAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAGgtaaaagtacacaacgccaactggctgttacagctataagtgaacagcta Alignment from Spaln_nt2Genome GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattggtacattgagtggggacatgtcattctcctctgtagGTGAGACCCCTCAATCCACGAAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAGgtaaaagtacacaacgccaactggctgttacagctataagtgaacagcta Alignment from Pairagon GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattggtacattgagtggggacatgtcattctcctctgtagGTGAGACCCCTCAATCCACGAAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAGgtaaaagtacacaacgccaactggctgttacagctataagtgaacagcta Alignment from Exonerate_protein2genome GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattggtacattgagtggggacatgtcattctcctctgtagGTGAGACCCCTCAATCCACGAAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAGgtaaaagtacacaacgccaactggctgttacagctataagtgaacagcta Alignment from Exonerate_coding2genome tggttgtcaaattggtacattgagtggggacatgtcattctcctctgtaggtgagacccctcaatccacgaaggctcattattcctttatggtactgaaaaactccgcctgacttacctcagaaacccactggcaggtaaaagtacacaacgccaactggctgttacagctataagtgaacagcta Alignment from GeneWise GACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG tggttgtcaaattggtacattgagtggggacatgtcattctcctctgtaggtgagACCCCTCAATCCACGAAGGCTCATTATTCCTTTATGGTACTGAAAAACTCCGCCTGACTTACCTCAGAAACCCACTGGCAGgtaaaagtacacaacgccaactggctgttacagctataagtgaacagcta #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGACCTC-ACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagaaAAAGACGAGTTTGAGATTCCTGACCTGCACA---AACAGCCGGCGTCAACTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTaggtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagaaAAAGACGAGTTTGAGATTCCTGACCTGCAC--AAACAGCCGGCGTCAACTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTaggtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGC--ACAAACAGCCGGCGTCAACTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAA-CAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCT---GCACAAACAGCCGGCGTCAACTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGACCT---CACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGCACA-----AACAGCCGGCGTCAACTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTC-ACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGCACA---AACAGCCGGCGTCAACTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTC-ACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGCACA---AACAGCCGGCGTCAACTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gctgttacagctataagtgaacagctacccttctccctgtctcgtttcagAAAAAGACGAGTTTGAGATTCCTGACCTGC--ACAAACAGCCGGCGTCAACTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGACTGATGAGCTGCAACAGCAACAGCGTAGgtcgggtgctatatggcaggcctggctgatggctcagggattttccattc #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTC-AGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagctGGTAGTGTCCCATTACCATCGGGCTCAGTACCAGGGGCTGCTGCACCTTTCCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from CESAR ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTC-AGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagctGGTAGTGTCCCATTACCATCGGGCTCAGTACCAGGGGCTGCTGCACCTTTCCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Spaln_aa2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCAGGGGCTGCTGCACCTTTCCAGACCA--TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Spaln_nt2Genome CGGG-AGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTC-AGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCAGGGGCTGCTGCACCTTTCCAGACC---ATTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Pairagon GTCCCTACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTT-CAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacag----------CTGGTAGTGTCCCATTACCATCGGGCTCAGTACCAGGGGCTGCTGCACCTTTCCAGACC---ATTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTC-AGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCAGGGGCTGCTGCACCTTTCCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from Exonerate_coding2genome CCGGTCCCTACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTC-AGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttCCCTCCTCAACAGCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCAGGGGCTGCTGCACCTTTCCAGACCA---TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG cgatctaaaagtctgtgatgaacccctcattgcatttccctcctcaacagCTGGTAGTGTCCCATTACCATCGGGCTCAGTACCAGGGGCTGCTGCACCTTTCCAGACCA--TTCAATGACTTTGGTCCTCCCACCATGGGTTATGTCCAAgtgagtttgctcaaggggttactcaaggatgtagggacaaggcccctatt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCC-ACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gacaaggcccctattgggggtacttgagctttctttctcattctctgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtattggcaaccatgggtaagctgtgacaagacagtgtagtcaggaaagt Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCC-ACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gacaaggcccctattgggggtacttgagctttctttctcattctctgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtattggcaaccatgggtaagctgtgacaagacagtgtagtcaggaaagt Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCC-ACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagctttctttctcattctctgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCcACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtattggcaaccatgggtaagctgtgacaagacagtgtagtcaggaaagt Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagctttctttctcattctctgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtattggcaaccatgggtaagctgtgacaagacagtgtagtcaggaaagt Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagctttctttctcattctctgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtattggcaaccatgggtaagctgtgacaagacagtgtagtcaggaaagt Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagctttctttctcattctctgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtattggcaaccatgggtaagctgtgacaagacagtgtagtcaggaaagt Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagctttctttctcattctctgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtattggcaaccatgggtaagctgtgacaagacagtgtagtcaggaaagt Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCC-ACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagctttctttctcattctctgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtattggcaaccatgggtaagctgtgacaagacagtgtagtcaggaaagt #### Cep78_ID3982_4 --> 2 - 0 Original Alignment ttATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGG-CAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtctgcttgcaacaaaggttgacaacttaattttaaacattaattacagttATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtatgtaatgttctaattcagtgttactgcagttcatgtattgacgagac Alignment from CESAR ttATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGG-CAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtctgcttgcaacaaaggttgacaacttaattttaaacattaattacagttATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtatgtaatgttctaattcagtgttactgcagttcatgtattgacgagac Alignment from Spaln_aa2Genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGG-CAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtctgcttgcaacaaaggttgacaacttaattttaaacattaattacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGcCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtatgtaatgttctaattcagtgttactgcagttcatgtattgacgagac Alignment from Spaln_nt2Genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGC-AAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtctgcttgcaacaaaggttgacaacttaattttaaacattaattacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtatgtaatgttctaattcagtgttactgcagttcatgtattgacgagac Alignment from Pairagon TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGG-CAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtctgcttgcaacaaaggttgacaacttaattttaaacattaattacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtatgtaatgttctaattcagtgttactgcagttcatgtattgacgagac Alignment from Exonerate_protein2genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGG-CAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtctgcttgcaacaaaggttgacaacttaattttaaacattaattacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtatgtaatgttctaattcagtgttactgcagttcatgtattgacgagac Alignment from Exonerate_coding2genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGG-CAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtctgcttgcaacaaaggttgacaacttaattttaaacattaattacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtatgtaatgttctaattcagtgttactgcagttcatgtattgacgagac Alignment from GeneWise TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGG-CAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tgtctgcttgcaacaaaggttgacaacttaattttaaacattaattacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCTCTTAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtatgtaatgttctaattcagtgttactgcagttcatgtattgacgagac #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa tggccattctcaatgggtagatacctgaattgcttctccctccttttcagGGATTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTCGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtacgttgataaattttataatcatcttagtggctcattccactcatttg Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa tggccattctcaatgggtagatacctgaattgcttctccctccttttcagGGATTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTCGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtacgttgataaattttataatcatcttagtggctcattccactcatttg Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA tggccattctcaatgggtagatacctgaattgcttctccctccttttcagGGATTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTcGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtacgttgataaattttataatcatcttagtggctcattccactcatttg Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA tggccattctcaatgggtagatacctgaattgcttctccctccttttcagGGATTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTCGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtacgttgataaattttataatcatcttagtggctcattccactcatttg Alignment from Pairagon GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA tggccattctcaatgggtagatacctgaattgcttctccctccttttcagGGATTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTCGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtacgttgataaattttataatcatcttagtggctcattccactcatttg Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA tggccattctcaatgggtagatacctgaattgcttctccctccttttcagGGATTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTCGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtacgttgataaattttataatcatcttagtggctcattccactcatttg Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA tggccattctcaatgggtagatacctgaattgcttctccctccttttcagGGATTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTCGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtacgttgataaattttataatcatcttagtggctcattccactcatttg Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA tggccattctcaatgggtagatacctgaattgcttctccctccttttcagGGATTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTCGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtacgttgataaattttataatcatcttagtggctcattccactcatttg #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCG-GGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg attcaaagatactatatgagccttgaaggaacccttttgctcccccacagccTATGGTATGATTCCACGGTCCACCTGGC------CGAGATGTAGGGACCCCGGGCCCGCAAggtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from CESAR ccTACGGCACTATCCCG-GGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg attcaaagatactatatgagccttgaaggaacccttttgctcccccacagccTATGGTATGATTCCACGGTCCACCTGGCCGA------GATGTAGGGACCCCGGGCCCGCAAggtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Spaln_aa2Genome CCTACGGCACTATCCCG-GGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG attcaaagatactatatgagccttgaaggaacccttttgctcccccacagCCTATGGTATGATTCCAcGGTCCACCTGGCCGA------GATGTAGGGACCCCGGGCCCGCAAGgtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Spaln_nt2Genome CCTACGGCACTATCCCG-GGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG attcaaagatactatatgagccttgaaggaacccttttgctcccccacagCCTATGGTATGATTCCACGGTCCACCTGGCC------GAGATGTAGGGACCCCGGGCCCGCAAGgtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Pairagon CCTACGGCACTATCCCG-GGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG attcaaagatactatatgagccttgaaggaacccttttgctcccccacagCCTATGGTATGATTCCACGGTCCACCTGGCC------GAGATGTAGGGACCCCGGGCCCGCAAGgtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Exonerate_protein2genome CCTACGGCACTATCCCG-GGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG attcaaagatactatatgagccttgaaggaacccttttgctcccccacagCCTATGGTATGATTCCACGGTCCACCTGGCCGA------GATGTAGGGACCCCGGGCCCGCAAGgtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from Exonerate_coding2genome attcaaagatactatatgagccttgaaggaacccttttgctcccccacagcctatggtatgattccacggtccacctggccgagatgtagggaccccgggcccgcaaggtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc Alignment from GeneWise attcaaagatactatatgagccttgaaggaacccttttgctcccccacagcctatggtatgattccacggtccacctggccgagatgtagggaccccgggcccgcaaggtaagtatgccaaatcaattgtttagttgatatagtttagttgataatgc #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACACTACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAagtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACACTACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAagtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACAcTACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCAC-CTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACACTACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCAC-CTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACACTACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACACTACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from Exonerate_coding2genome aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagccacgagtttgtcgtccaccccaggcccagcaggaccatcaggaccaccagctcctcgagggcctcctggggtttcgacagcctcgtctacactacgctgcggaaaacagtgataacttccgatgtgagctgattagttacctcacaagtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCC-ACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aaggtccgccctgcttaatgttgtttcttttgaaatgttttttcttgtagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGACCATCAGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTTTCGACAGCCTCGTCTACACTACGCTGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGTTACCTCACAAgtaagcatcctggttgcttttctgtctccctacggagaacgtagccatta #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAT-GGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcaatgactctaagtatactttttttcttcatgctaggaAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAACGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCATATTCTCAACTATATGTCAagtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAT-GGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcaatgactctaagtatactttttttcttcatgctaggaAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAACGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCATATTCTCAACTATATGTCAagtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAT-GGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAAcGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCATATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAT-GGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAACGGGTCGCTACTGTC---------TGGAGAGCTGAGCAAGCATATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAG-ATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAACGGGTCGCTACTGTC---------TGGAGAGCTGAGCAAGCATATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAT-GGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAACGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCATATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from Exonerate_coding2genome acatagattgggctcaatgactctaagtatactttttttcttcatgctaggaaatgatgtgtggcaagacctacgtcaaaatctagtaggtcctccgagtccttcagggccattagccatcagtggagaacgggtcgctactgtctggagagctgagcaagcatattctcaactatatgtcaagtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGA-GATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcaatgactctaagtatactttttttcttcatgctagGAAATGATGTGTGGCAAGACCTACGTCAAAATCTAGTAGGTCCTCCGAGTCCTTCAGGGCCATTAGCCATCAGTGGAGAACGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCATATTCTCAACTATATGTCAAgtaagaaggcaggtgtactcacctcactaaggatccgggggttgcctctt #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCT-GGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagctTCAGGATACAGTGCTCGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGAcgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from CESAR caTCAGGCTACGGTGCT-GGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagctTCAGGATACAGTGCTCGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGAcgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Spaln_aa2Genome GGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagcttcagGATACAGTGCTCGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCT-GGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagCTTCAGGATACAGTGCTCGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Pairagon CATCAGGCTACGGTGCT-GGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagCTTCAGGATACAGTGCTCGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCT-GGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagCTTCAGGATACAGTGCTCGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from Exonerate_coding2genome gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagcttcaggatacagtgctcggcttgtcctctgcttcctcatcagaggatatcttggccatgctacgacgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcatgagcccgtttctcctccatagcttcaggatacagTG------------CTCGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaacttcaggataggcaatactaaattcttttatctacctctgat #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGC-CCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg tcccactggtgagggtgttatcacatcatgaaataatacatttaatctaggtGAGGGTGTGCCAGGTCCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTggtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from CESAR ggGAAGGCGTACCAGGC-CCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg tcccactggtgagggtgttatcacatcatgaaataatacatttaatctaggtGAGGGTGTGCCAGGTCCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTggtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGC-CCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTcCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGG-CCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Pairagon GGGAAGGCGTACCAGG-CCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGC-CCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Exonerate_coding2genome GGGAAGGCGTACCAGGC-CCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from GeneWise ----------GGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctaggtgagGGTGTGCCAGGTCCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta #### Col17a1_ID10284_38 --> 2 - 1 Original Alignment ggCCTTCCATCCCAGGCCCGCCAGGACCC-AGAGGTCCACCAg ctgcaatcttaatggggggagaagcacaaaatggtaaaatgcatctttaggtCCTTCTACTCCAGGCCCACCAGGACCCCCGAAGTCCACCAggtgggtgtttaattttgttaagagaggtggggactaaggccagggtaaac Alignment from CESAR ggCCTTCCATCCCAGGCCCGCCAGGA-CCCAGAGGTCCACCAg ctgcaatcttaatggggggagaagcacaaaatggtaaaatgcatctttaggtCCTTCTACTCCAGGCCCACCAGGACCCCCGAAGTCCACCAggtgggtgtttaattttgttaagagaggtggggactaaggccagggtaaac Alignment from Spaln_aa2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCC-AGAGGTCCACCAG ctgcaatcttaatggggggagaagcacaaaatggtaaaatgcatctttagGTCCTTCTACTCCAGGCCCACCAGGACCCcCGAAGTCCACCAGgtgggtgtttaattttgttaagagaggtggggactaaggccagggtaaac Alignment from Spaln_nt2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCA-GAGGTCCACCAG ctgcaatcttaatggggggagaagcacaaaatggtaaaatgcatctttagGTCCTTCTACTCCAGGCCCACCAGGACCCCCGAAGTCCACCAGgtgggtgtttaattttgttaagagaggtggggactaaggccagggtaaac Alignment from Pairagon GGCCTTCCATCCCAGGCCCGCCAGGA-CCCAGAGGTCCACCAG ctgcaatcttaatggggggagaagcacaaaatggtaaaatgcatctttagGTCCTTCTACTCCAGGCCCACCAGGACCCCCGAAGTCCACCAGgtgggtgtttaattttgttaagagaggtggggactaaggccagggtaaac Alignment from Exonerate_protein2genome ctgcaatcttaatggggggagaagcacaaaatggtaaaatgcatctttaggtccttctactccaggcccaccaggacccccgaagtccaccaggtgggtgtttaattttgttaagagaggtggggactaaggccagggtaaac Alignment from Exonerate_coding2genome ctgcaatcttaatggggggagaagcacaaaatggtaaaatgcatctttaggtccttctactccaggcccaccaggacccccgaagtccaccaggtgggtgtttaattttgttaagagaggtggggactaaggccagggtaaac Alignment from GeneWise GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAGGGGAA ctgcaatcttaatggggggagaagcacaaaatggtaaaatgcatctttagGTCCTTCTACTCCAGGCCCACCAGGACCCCCGAAGTCCACCAGGTGGgtgtttaattttgttaagagaggtggggactaaggccagggtaaac #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGA-GGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagaaGGGGTTGGTTTACATCGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAggtaagccctcactgcaatcttaatggggggagaagcacactctccctctt Alignment from CESAR aaGGTGTTGACTTACGA-GGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagaaGGGGTTGGTTTACATCGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAggtaagccctcactgcaatcttaatggggggagaagcacaaaatggtaaaa Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGA-GGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATcGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacactctccctctt Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGA-GGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATCGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacactctccctctt Alignment from Pairagon AAGGTGTTGACTTACG-AGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATCGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacactctccctctt Alignment from Exonerate_protein2genome ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagaaggggttggtttacatcggcccccctggcccctctggaccacgaggagcaccaggtaagccctcactgcaatcttaatggggggagaagcacactctccctctt Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGA-GGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATCGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacactctccctctt Alignment from GeneWise ----GGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagaaggggttggtttacatcggcccccctggcccctctggaccacgaggagcaccaggtaagCCCTCACTGCAATCTTAATGGGGGGAGAAGCACACTCTCCCTCTT #### Col17a1_ID10293_29 --> 2 - 1 Original Alignment gtCCGGCTGGCGCTGAT-GGACAGCAAGGTTCCAGAg aggtatcagaaagcccatttctcagttaaggcgttctttctccttcccaggtCCAGCTGGTGCTGACCGGACAACAAGGTTCACGGggttagacaatcctttgtagtcttattgatgaccggttgccctttgtcctc Alignment from CESAR gtCCGGCTGGCGCTGAT-GGACAGCAAGGTTCCAGAg aggtatcagaaagcccatttctcagttaaggcgttctttctccttcccaggtCCAGCTGGTGCTGACCGGACAACAAGGTTCACGGggttagacaatcctttgtagtcttattgatgaccggttgccctttgtcctc Alignment from Spaln_aa2Genome GTCCGGCTGGCGCTGAT-GGACAGCAAGGTTCCAGAG aggtatcagaaagcccatttctcagttaaggcgttctttctccttcccagGTCCAGCTGGTGCTGACcGGACAACAAGGTTCACGGGgttagacaatcctttgtagtcttattgatgaccggttgccctttgtcctc Alignment from Spaln_nt2Genome GTCCGGCTGGCGCTGAT-GGACAGCAAGGTTCCAGAG aggtatcagaaagcccatttctcagttaaggcgttctttctccttcccagGTCCAGCTGGTGCTGACCGGACAACAAGGTTCACGGGgttagacaatcctttgtagtcttattgatgaccggttgccctttgtcctc Alignment from Pairagon GTCCGGCTGGCGCTGA-TGGACAGCAAGGTTCCAGAG aggtatcagaaagcccatttctcagttaaggcgttctttctccttcccagGTCCAGCTGGTGCTGACCGGACAACAAGGTTCACGGGgttagacaatcctttgtagtcttattgatgaccggttgccctttgtcctc Alignment from Exonerate_protein2genome GTCCGGCTGGCGCTGAT-GGACAGCAAGGTTCCAGAG aggtatcagaaagcccatttctcagttaaggcgttctttctccttcccagGTCCAGCTGGTGCTGACCGGACAACAAGGTTCACGGGgttagacaatcctttgtagtcttattgatgaccggttgccctttgtcctc Alignment from Exonerate_coding2genome aggtatcagaaagcccatttctcagttaaggcgttctttctccttcccaggtccagctggtgctgaccggacaacaaggttcacggggttagacaatcctttgtagtcttattgatgaccggttgccctttgtcctc Alignment from GeneWise aggtatcagaaagcccatttctcagttaaggcgttctttctccttcccaggtccagctggtgctgaccggacaacaaggttcacggggttagacaatcctttgtagtcttattgatgaccggttgccctttgtcctc #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGT-GACGTGGGACTTCCTGGTGTCAAAg tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcaggtGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGGACTGCCCGGTGTGAAAggtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGT-GACGTGGGACTTCCTGGTGTCAAAg tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcaggtGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGGACTGCCCGGTGTGAAAggtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGT-GACGTGGGACTTCCTGGTGTCAAAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTcGATGTGGGACTGCCCGGTGTGAAAGgtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGT-GACGTGGGACTTCCTGGTGTCAAAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGGACTGCCCGGTGTGAAAGgtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGT-GACGTGGGACTTCCTGGTGTCAAAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGGACTGCCCGGTGTGAAAGgtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGT-GACGTGGGACTTCCTGGTGTCAAAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTCGATGTGGGACTGCCCGGTGTGAAAGgtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Exonerate_coding2genome tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcaggtgctgtgggaacccagggacttcggggtcgatgtgggactgcccggtgtgaaaggtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from GeneWise tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcaggtgctgtgggaacccagggacttcggggtcgatgtgggactgcccggtgtgaaaggtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCT-GGAGAGAAAGGAGACAGAg cactattctgtgctcttgcatctttcttctccccgaattccctctggcaggaGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGAGAAAGGAGACCAAggtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCT-GGAGAGAAAGGAGACAGAg cactattctgtgctcttgcatctttcttctccccgaattccctctggcaggaGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGAGAAAGGAGACCAAggtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCT-GGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTcGGGGAGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCT-GGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGAGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCT-GGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGAGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Exonerate_protein2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCT-GGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGAGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from Exonerate_coding2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCT-GGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGAGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt Alignment from GeneWise GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGG-TCTGGAGAGAAAGGAGACAGAG cactattctgtgctcttgcatctttcttctccccgaattccctctggcagGAGATCCTGGCATGGAAGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTCGGGGAGAAAGGAGACCAAGgtaagcgtcactatcaacactatagtgtggtgacctgcatctgttcattt #### Col17a1_ID10304_18 --> 2 - 1 Original Alignment ggAATCTCAGAGGAAGT-CCTGGTCCAAAAg aagggtgacacagagcaggcttccttttatatcccctcccttttatatagggAATCCCAGTGGGAGTCCCAAGTCCTAAGggtaagggagtagtacccccatctttcctgggacagatgagtgattccaca Alignment from CESAR ggAATCTCAGAGGAAGT-CCTGGTCCAAAAg aagggtgacacagagcaggcttccttttatatcccctcccttttatatagggAATCCCAGTGGGAGTCCCAAGTCCTAAGggtaagggagtagtacccccatctttcctgggacagatgagtgattccaca Alignment from Spaln_aa2Genome aagggtgacacagagcaggcttccttttatatcccctcccttttatatagggaatcccagtgggagtcccaagtcctaagggtaagggagtagtacccccatctttcctgggacagatgagtgattccaca Alignment from Spaln_nt2Genome GGAATCTCAGAGGAAGTCCTG-GTCCAAAAG aagggtgacacagagcaggcttccttttatatcccctcccttttatatagGGAATCCCAGTGGGAGTCCCAAGTCCTAAGGgtaagggagtagtacccccatctttcctgggacagatgagtgattccaca Alignment from Pairagon GGAATCTCAGAGGAAGTCCT-GGTCCAAAAG aagggtgacacagagcaggcttccttttatatcccctcccttttatatagGGAATCCCAGTGGGAGTCCCAAGTCCTAAGGgtaagggagtagtacccccatctttcctgggacagatgagtgattccaca Alignment from Exonerate_protein2genome aagggtgacacagagcaggcttccttttatatcccctcccttttatatagggaatcccagtgggagtcccaagtcctaagggtaagggagtagtacccccatctttcctgggacagatgagtgattccaca Alignment from Exonerate_coding2genome aagggtgacacagagcaggcttccttttatatcccctcccttttatatagggaatcccagtgggagtcccaagtcctaagggtaagggagtagtacccccatctttcctgggacagatgagtgattccaca Alignment from GeneWise aagggtgacacagagcaggcttccttttatatcccctcccttttatatagggaatcccagtgggagtcccaagtcctaagggtaagggagtagtacccccatctttcctgggacagatgagtgattccaca #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg acagagatataaagacagtgcacttaagagacctcctctttcctttatagcaTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGCGCGGCATATGCTGCTGACACCTGCCTGAAGGCAGATGTGAATggtaaagtaatagcagccactgcgtgcacaaacctgcaccttatttttctt Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg acagagatataaagacagtgcacttaagagacctcctctttcctttatagcaTCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGCGCGGCATATGCTGCTGACACCTGCCTGAAGGCAGATGTGAATggtaaagtaatagcagccactgcgtgcacaaacctgcaccttatttttctt Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG acagagatataaagacagtgcacttaagagacctcctctttcctttatagCATCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGcGCGGCATATGCTGCTGACACCTGCCTGAAGGCAGATGTGAATGgtaaagtaatagcagccactgcgtgcacaaacctgcaccttatttttctt Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG acagagatataaagacagtgcacttaagagacctcctctttcctttatagCATCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGCGCGGCATATGCTGCTGACACCTGCCTGAAGGCAGATGTGAATGgtaaagtaatagcagccactgcgtgcacaaacctgcaccttatttttctt Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG acagagatataaagacagtgcacttaagagacctcctctttcctttatagCATCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGCGCGGCATATGCTGCTGACACCTGCCTGAAGGCAGATGTGAATGgtaaagtaatagcagccactgcgtgcacaaacctgcaccttatttttctt Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG acagagatataaagacagtgcacttaagagacctcctctttcctttatagCATCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGCGCGGCATATGCTGCTGACACCTGCCTGAAGGCAGATGTGAATGgtaaagtaatagcagccactgcgtgcacaaacctgcaccttatttttctt Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG acagagatataaagacagtgcacttaagagacctcctctttcctttatagCATCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGCGCGGCATATGCTGCTGACACCTGCCTGAAGGCAGATGTGAATGgtaaagtaatagcagccactgcgtgcacaaacctgcaccttatttttctt Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG acagagatataaagacagtgcacttaagagacctcctctttcctttatagCATCTTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGCGCGGCATATGCTGCTGACACCTGCCTGAAGGCAGATGTGAATGgtaaagtaatagcagccactgcgtgcacaaacctgcaccttatttttctt #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAAcGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagccaaaaagcttaagattagttcttttttttcccccataaagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGTCTGTTCTAGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACGgtaactaaaaacctgttcagtttttattgtatcaaaatcagtaactttta #### Cpsf7_ID2863_3 --> 0 - 2 Original Alignment TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGC-TCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg gagggccatgaaccgctagacttgatctcttttctttttctctttattagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCTAATGGCCCATCTAAAgggtaagtgtcgaaactatgggggaacccttgactcatcttttgagtgactt Alignment from CESAR TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGC-TCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg gagggccatgaaccgctagacttgatctcttttctttttctctttattagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCTAATGGCCCATCTAAAgggtaagtgtcgaaactatgggggaacccttgactcatcttttgagtgactt Alignment from Spaln_aa2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGC-TCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gagggccatgaaccgctagacttgatctcttttctttttctctttattagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCcTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCTAATGGCCCATCTAAAGGgtaagtgtcgaaactatgggggaacccttgactcatcttttgagtgactt Alignment from Spaln_nt2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGC-TCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gagggccatgaaccgctagacttgatctcttttctttttctctttattagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCTAATGGCCCATCTAAAGGgtaagtgtcgaaactatgggggaacccttgactcatcttttgagtgactt Alignment from Pairagon TGGACCACAGACCAGCAGCTGATCCAGGTTATCCG-CTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gagggccatgaaccgctagacttgatctcttttctttttctctttattagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCTAATGGCCCATCTAAAGGgtaagtgtcgaaactatgggggaacccttgactcatcttttgagtgactt Alignment from Exonerate_protein2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGC-TCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gagggccatgaaccgctagacttgatctcttttctttttctctttattagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCTAATGGCCCATCTAAAGGgtaagtgtcgaaactatgggggaacccttgactcatcttttgagtgactt Alignment from Exonerate_coding2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGC-TCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gagggccatgaaccgctagacttgatctcttttctttttctctttattagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCTAATGGCCCATCTAAAGGgtaagtgtcgaaactatgggggaacccttgactcatcttttgagtgactt Alignment from GeneWise TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGC-TCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gagggccatgaaccgctagacttgatctcttttctttttctctttattagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCTAATGGCCCATCTAAAGGgtaagtgtcgaaactatgggggaacccttgactcatcttttgagtgactt #### Crtac1_ID8462_10 --> 2 - 0 Original Alignment ggGGCGTAGTGACCGAC-TTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttccttgcccaaatagtgacagcctgggatgctttctttctgttgcagggGGTGTGGTGACTGATCTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCCGTGGGAATCAGgtaaaaaacattttatctaagtgacccctctgtatgataatatacaccag Alignment from CESAR ggGGCGTAGTGACCGAC-TTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttccttgcccaaatagtgacagcctgggatgctttctttctgttgcagggGGTGTGGTGACTGATCTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCCGTGGGAATCAGgtaaaaaacattttatctaagtgacccctctgtatgataatatacaccag Alignment from Spaln_aa2Genome GGGGCGTAGTGACCGAC-TTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttccttgcccaaatagtgacagcctgggatgctttctttctgttgcagGGGGTGTGGTGACTGATcTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCCGTGGGAATCAGgtaaaaaacattttatctaagtgacccctctgtatgataatatacaccag Alignment from Spaln_nt2Genome GGGGCGTAGTGACCGA-CTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttccttgcccaaatagtgacagcctgggatgctttctttctgttgcagGGGGTGTGGTGACTGATCTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCCGTGGGAATCAGgtaaaaaacattttatctaagtgacccctctgtatgataatatacaccag Alignment from Pairagon GGGGCGTAGTGACCGA-CTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttccttgcccaaatagtgacagcctgggatgctttctttctgttgcagGGGGTGTGGTGACTGATCTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCCGTGGGAATCAGgtaaaaaacattttatctaagtgacccctctgtatgataatatacaccag Alignment from Exonerate_protein2genome GGGGCGTAGTGACCGAC-TTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttccttgcccaaatagtgacagcctgggatgctttctttctgttgcagGGGGTGTGGTGACTGATCTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCCGTGGGAATCAGgtaaaaaacattttatctaagtgacccctctgtatgataatatacaccag Alignment from Exonerate_coding2genome GGGGCGTAGTGACCGAC-TTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttccttgcccaaatagtgacagcctgggatgctttctttctgttgcagGGGGTGTGGTGACTGATCTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCCGTGGGAATCAGgtaaaaaacattttatctaagtgacccctctgtatgataatatacaccag Alignment from GeneWise GGGGCGTAGTGACC-GACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG ccttccttgcccaaatagtgacagcctgggatgctttctttctgttgcagGGGGTGTGGTGACTGATCTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCCATTTTCCGTGGGAATCAGgtaaaaaacattttatctaagtgacccctctgtatgataatatacaccag #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac atagaagtagtgttggattgcacccaagaatgcacttggtgtctccctaggcACTGCAGGCACTGGGGCAGAGAATCTGATCTGTGAGCATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtataatgtaaacccccagctgtctgtccacagagcattgctactatttt Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac atagaagtagtgttggattgcacccaagaatgcacttggtgtctccctaggcACTGCAGGCACTGGGGCAGAGAATCTGATCTGTGAGCATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtataatgtaaacccccagctgtctgtccacagagcattgctactatttt Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC atagaagtagtgttggattgcacccaagaatgcacttggtgtctccctagGCACTGCAGGCACTGGGGCAGAGAATCTGATCTGTGAGcATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtataatgtaaacccccagctgtctgtccacagagcattgctactatttt Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC atagaagtagtgttggattgcacccaagaatgcacttggtgtctccctagGCACTGCAGGCACTGGGGCAGAGAATCTGATCTGTGAGCATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtataatgtaaacccccagctgtctgtccacagagcattgctactatttt Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC atagaagtagtgttggattgcacccaagaatgcacttggtgtctccctagGCACTGCAGGCACTGGGGCAGAGAATCTGATCTGTGAGCATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtataatgtaaacccccagctgtctgtccacagagcattgctactatttt Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC atagaagtagtgttggattgcacccaagaatgcacttggtgtctccctagGCACTGCAGGCACTGGGGCAGAGAATCTGATCTGTGAGCATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtataatgtaaacccccagctgtctgtccacagagcattgctactatttt Alignment from Exonerate_coding2genome atagaagtagtgttggattgcacccaagaatgcacttggtgtctccctaggcactgcaggcactggggcagagaatctgatctgtgagcattcgagcttcacgctttctttcctgtgcttggcgagaggggccagctgcaccggcagatgtccagcactcactgcaggtccttaactcaacgtataatgtaaacccccagctgtctgtccacagagcattgctactatttt Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC atagaagtagtgttggattgcacccaagaatgcacttggtgtctccctagGCACTGCAGGCACTGGGGCAGAGAATCTGATCTGTGAGCATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtataatgtaaacccccagctgtctgtccacagagcattgctactatttt #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACC-GCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagccCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTCGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACC-GCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagccCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTCGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACC-GCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTcGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACAC-CGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTCGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACAC-CGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTCGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACC-GCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTCGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACC-GCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTCGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACC-GCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTCGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCT-GGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG tgtgggtctagtttcacgccctaactctccaggctccctccccctcacagagGAAGAAATCCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAGTCTCGGCAGGAAGATGAGTTCAGCGAAATCCATAAATGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaggggtaacttgaaattgggagggggtgcaaggcctattagagctaac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCT-GGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG tgtgggtctagtttcacgccctaactctccaggctccctccccctcacagagGAAGAAATCCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAGTCTCGGCAGGAAGATGAGTTCAGCGAAATCCATAAATGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaggggtaacttgaaattgggagggggtgcaaggcctattagagctaac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCT-GGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG tgtgggtctagtttcacgccctaactctccaggctccctccccctcacagAGGAAGAAATCCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAGTCTcGGCAGGAAGATGAGTTCAGCGAAATCCATAAATGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaggggtaacttgaaattgggagggggtgcaaggcctattagagctaac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCT-GGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG tgtgggtctagtttcacgccctaactctccaggctccctccccctcacagAGGAAGAAATCCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAGTCTCGGCAGGAAGATGAGTTCAGCGAAATCCATAAATGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaggggtaacttgaaattgggagggggtgcaaggcctattagagctaac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCT-GGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAA------------------------------------------------------ tgtgggtctagtttcacgccctaactctccaggctccctccccctcacagAGGAAGAAATCCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAGTCTCGGCAGGAAGATGAGTTCAGCGAAATCCATAAATGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAGTAGGGGTAACTTGAAATTGGGAGGGGGTGCAAGGCCTATTAGAGCTAAC Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCT-GGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG tgtgggtctagtttcacgccctaactctccaggctccctccccctcacagAGGAAGAAATCCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAGTCTCGGCAGGAAGATGAGTTCAGCGAAATCCATAAATGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaggggtaacttgaaattgggagggggtgcaaggcctattagagctaac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCT-GGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG tgtgggtctagtttcacgccctaactctccaggctccctccccctcacagAGGAAGAAATCCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAGTCTCGGCAGGAAGATGAGTTCAGCGAAATCCATAAATGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaggggtaacttgaaattgggagggggtgcaaggcctattagagctaac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAG-TCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG tgtgggtctagtttcacgccctaactctccaggctccctccccctcacagAGGAAGAAATCCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAGTCTCGGCAGGAAGATGAGTTCAGCGAAATCCATAAATGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaggggtaacttgaaattgggagggggtgcaaggcctattagagctaac #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGC-CAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCCAGTGG---TTGATCCGAGGAACTCTGCTTTCA---TCAGAACAGggtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGC-CAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCCAGTGG---TTGATCCGAGGAACTCTGCTTTCA---TCAGAACAGggtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Spaln_aa2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGC-CAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCcCAGTGGTTGATC---CGAGGAACTCTGCTTTCA---TCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Spaln_nt2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCC-AGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCCAGTGGT---TGATCCGAGGAACTCTGCTTTC---ATCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Pairagon ------------------------------------------------------GCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGG-CCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG CCTCGGAGAACCCCATTAGAGAACTCTGACCCTTAATTTGGGGGTTCTAGAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCCAGTGGT---TGATCCGAGGAACTCTGCTTTC---ATCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Exonerate_protein2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGC-CAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCCAGTGGTTGATC---CGAGGAACTCTGCTTTCA---TCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from Exonerate_coding2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGC-CAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCCAGTGGTTGATC---CGAGGAACTCTGCTTTCA---TCAGAACAGGgtgagtatcctgatccattctgtgtttatcagacaaacccctccataggg Alignment from GeneWise ---GGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGC-CAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAG--------------------------------------------------- cctcggagaaccccattagagaactctgacccttaatttgggggttctagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCCAGTGGTTGATC---CGAGGAACTCTGCTTTCA---TCAGAACAGGGTGAGTATCCTGATCCATTCTGTGTTTATCAGACAAACCCCTCCATAGGG #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGC-CGGAATGAAAATa gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccaggaGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCCAAAATGAAAATagtaagtgagggctaccctaggtgacttggggtaacacaactggtttctcc Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGC-CGGAATGAAAATa gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccaggaGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCCAAAATGAAAATagtaagtgagggctaccctaggtgacttggggtaacacaactgggtccttt Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGC-CGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTcCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtttctcc Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAG-CCGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtttctcc Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAG-CCGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtttctcc Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGC-CGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtttctcc Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGC-CGGAATGAAAATA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCCAAAATGAAAATAgtaagtgagggctaccctaggtgacttggggtaacacaactggtttctcc Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGA gcagggcatcaactgtagcaggtcgtcagctcacccctattccatcccagGAGGTCTGGAGACAGAAGATGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAgtccaaaatgaaaatagtaagtgagggctaccctaggtgacttggggtaacacaactggtttctcc #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG cctaggtgacttggggtaacacaactgggtcctttcctgccacatgctagagAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATCAATGCCTTTGGAATGCAGgtaacctgtttcattggaatgcaggcatagtgattctgacctccctgtgc Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG cctaggtgacttggggtaacacaactgggtcctttcctgccacatgctagagAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATCAATGCCTTTGGAATGCAGgtaacctgtttcattggaatgcaggcatagtgattctgacctccctgtgc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG cctaggtgacttggggtaacacaactgggtcctttcctgccacatgctagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCAcGTTGCCATCAATGCCTTTGGAATGCAGgtaacctgtttcattggaatgcaggcatagtgattctgacctccctgtgc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG cctaggtgacttggggtaacacaactgggtcctttcctgccacatgctagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATCAATGCCTTTGGAATGCAGgtaacctgtttcattggaatgcaggcatagtgattctgacctccctgtgc Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG cctaggtgacttggggtaacacaactgggtcctttcctgccacatgctagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATCAATGCCTTTGGAATGCAGgtaacctgtttcattggaatgcaggcatagtgattctgacctccctgtgc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG cctaggtgacttggggtaacacaactgggtcctttcctgccacatgctagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATCAATGCCTTTGGAATGCAGgtaacctgtttcattggaatgcaggcatagtgattctgacctccctgtgc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCA-GTTGCCATTAACGCCTTCGGCATGCAG cctaggtgacttggggtaacacaactgggtcctttcctgccacatgctagAGAGAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATCAATGCCTTTGGAATGCAGgtaacctgtttcattggaatgcaggcatagtgattctgacctccctgtgc Alignment from GeneWise AGCAGCCTGGCTGGCCCAGAAAGGACCTATC-TCAGTTGCCATTAACGCCTTCGGCATGCAG cctaggtgacttggggtaacacaactgggtcctttcctgccacatgctagagagAGCAGCCTGGCTGGCCCAGAAAGGTCCTATTTCACGTTGCCATCAATGCCTTTGGAATGCAGgtaacctgtttcattggaatgcaggcatagtgattctgacctccctgtgc #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGAC-AGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccaggtGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAACAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGggtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAG-GGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccaggtGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAACAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGggtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAG-GGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGaGGGAACAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAG-GGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAACAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCAG------CCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAG-GGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGA-TCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAACAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCAG-------CCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAG-GGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAACAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAG-GGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAACAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTC-CAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAACAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAA-CGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagagCTTTTGGACTGCAAGCCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATagtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from CESAR agCTGCTGGACTGCGAA-CGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagagCTTTTGGACTGCAAGCCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATagtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAA-CGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGcCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACG-CTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Pairagon AGCTGCTGGACTGCGAA-CGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAA-CGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAA-CGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt Alignment from GeneWise AGCTGCTGGACTGCGAA-CGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaaatatcatgtttttggttttagAGCTTTTGGACTGCAAGCCACTGTGGCAATGGCTGCAATGATGGCTTTATATGGGATGCATATCTAACTGTCCTCAATAATAgtaaggtattatggctataagcagatgaagtgtgcgcttggcatggaagt #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGG-CAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcttttgccaccctgctgctacccctgctccttctcctctcccagagGAGGAGTTTGGGCAATTATATGGGCCAA---AGATCACCAGAAAGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATTATCTCATCAATCAAGAATCAGgtaagtgccctagctcggtttgcacttatctaacccaaggacaaaaaacc Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcttttgccaccctgctgctacccctgctccttctcctctcccagagGAGGAGTTTGGGCAATTATATGGGCCA--AAGATCACCAGAAAGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATTATCTCATCAATCAAGAATCAGgtaagtgccctagctcggtttgcacttatctaacccaaggacagaatctc Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGCTGC-------- accactcttttgccaccctgctgctacccctgctccttctcctctcccagAGGAGGAGTTTGGGCAATTATATGGGC--CAAAGATCACCAGAAAGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATTATCTCATCAATCAAGAATCAGGTAAGTGCCCTAGCTCGgtttgcacttatctaacccaaggacaaaaaacc Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcttttgccaccctgctgctacccctgctccttctcctctcccagAGGAGGAGTTTGGGCAATTATATGGGC--CAAAGATCACCAGAAAGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATTATCTCATCAATCAAGAATCAGgtaagtgccctagctcggtttgcacttatctaacccaaggacaaaaaacc Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcttttgccaccctgctgctacccctgctccttctcctctcccagAGGAGGAGTTTGGGCAATTATATGGGCC--AAAGATCACCAGAAAGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATTATCTCATCAATCAAGAATCAGgtaagtgccctagctcggtttgcacttatctaacccaaggacaaaaaacc Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATAC-GGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcttttgccaccctgctgctacccctgctccttctcctctcccagAGGAGGAGTTTGGGCAATTATATGGGCCAA---AGATCACCAGAAAGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATTATCTCATCAATCAAGAATCAGgtaagtgccctagctcggtttgcacttatctaacccaaggacaaaaaacc Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATAC-GGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcttttgccaccctgctgctacccctgctccttctcctctcccagAGGAGGAGTTTGGGCAATTATATGGGCCAA---AGATCACCAGAAAGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATTATCTCATCAATCAAGAATCAGgtaagtgccctagctcggtttgcacttatctaacccaaggacaaaaaacc Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGC---------TG accactcttttgccaccctgctgctacccctgctccttctcctctcccagAGGAGGAGTTTGGGCAATTATATGGGC--CAAAGATCACCAGAAAGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATTATCTCATCAATCAAGAATCAGGTAAGTGCCCTAGCTCGgtttgcacttatctaacccaaggacaaaaaacc #### Cyp17a1_ID9994_6 --> 0 - 2 Original Alignment GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACT-ATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCag attcctttgttcctcttgcaaatatgtatcatctccttttcccctcccagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGTTTCAGACAAACTCCATCTTTCAATGACCGAACACACCTTCTCACACTGGAGGCCACACATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATTGACTCCaggtgagtccttcttgctgaattatctacttaggtttcagccaatcggtttc Alignment from CESAR GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACT-ATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCag attcctttgttcctcttgcaaatatgtatcatctccttttcccctcccagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGTTTCAGACAAACTCCATCTTTCAATGACCGAACACACCTTCTCACACTGGAGGCCACACATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATTGACTCCaggtgagtccttcttgctgaattatctacttaggtttcagccaatcggtttc Alignment from Spaln_aa2Genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACT-ATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaaatatgtatcatctccttttcccctcccagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGTTTCAGACAAACTCCATCTTTCAATGACCGAACACACCTTCTCACACTGGAGGCCACAcATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATTGACTCCAGgtgagtccttcttgctgaattatctacttaggtttcagccaatcggtttc Alignment from Spaln_nt2Genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACT-ATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaaatatgtatcatctccttttcccctcccagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGTTTCAGACAAACTCCATCTTTCAATGACCGAACACACCTTCTCACACTGGAGGCCACACATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATTGACTCCAGgtgagtccttcttgctgaattatctacttaggtttcagccaatcggtttc Alignment from Pairagon GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCAC-TATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaaatatgtatcatctccttttcccctcccagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGTTTCAGACAAACTCCATCTTTCAATGACCGAACACACCTTCTCACACTGGAGGCCACACATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATTGACTCCAGgtgagtccttcttgctgaattatctacttaggtttcagccaatcggtttc Alignment from Exonerate_protein2genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACT-ATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaaatatgtatcatctccttttcccctcccagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGTTTCAGACAAACTCCATCTTTCAATGACCGAACACACCTTCTCACACTGGAGGCCACACATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATTGACTCCAGgtgagtccttcttgctgaattatctacttaggtttcagccaatcggtttc Alignment from Exonerate_coding2genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACT-ATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaaatatgtatcatctccttttcccctcccagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGTTTCAGACAAACTCCATCTTTCAATGACCGAACACACCTTCTCACACTGGAGGCCACACATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATTGACTCCAGgtgagtccttcttgctgaattatctacttaggtttcagccaatcggtttc Alignment from GeneWise GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACT-ATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaaatatgtatcatctccttttcccctcccagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGTTTCAGACAAACTCCATCTTTCAATGACCGAACACACCTTCTCACACTGGAGGCCACACATGCGGGAGGTTCTTCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATTGACTCCAGgtgagtccttcttgctgaattatctacttaggtttcagccaatcggtttc #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCT-GAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTCGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtcctgtcctgtcctcacagGGTGTT---ACTCGTAATA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCT-GAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTCGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacataaaggatgatgtcttcttctagGGTGTT---ACTCGTAATA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCT-GAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTcGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtcctgtcctgtcctcacagGGTGTT---ACTCGTAATA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCT-GAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTCGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTGTATTACATCTGTCCTGTCCTGTCCTCACAGGGTGTTA---CTCGTAATA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCT-GAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGGGGCGTGAAGGCGCGGAACCTT-------------------------------------------------A tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTCGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCG---------------------TGTATTACATCTGTCCTGTCCTGTCCTCACAGGGTGTTACTCGTAATATAA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCT-GAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTCGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtcctgtcctgtcctcacagGGTGTT---ACTCGTAATA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCT-GAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTCGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtcctgtcctgtcctcacagGGTGTT---ACTCGTAATA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATC-GCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTCGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtcctgtcctgtcctcacagGGTGTT---ACTCGTAATA #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATT-GAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTCTGTACCGTgtaaaacataaaggatgatgtcttcttctagGGTGTT---ACTCGTAATATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATCCAAGCACTCATGGGAG---GGTGAAGAATTAGACATACAGgtgaggaacaatttcaaaaggtaccaaagggcagctgagtgtattcccaa Alignment from CESAR CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATT-GAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTCTGTACCGTgtattacataaaggatgatgtcttcttctagGGTGTT---ACTCGTAATATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATCCAAGCACTCATGGGAG---GGTGAAGAATTAGACATACAGgtgaggaacaatttcaaaaggtaccaaagggcagctgagtgtattcccaa Alignment from Spaln_aa2Genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAG-CACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTCTGTACCGTgtaaaacataaaggatgatgtcttcttctagGGTGTT---ACTCGTAATATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATCCAAgCACTCATGGGAG---GGTGAAGAATTAGACATACAGgtgaggaacaatttcaaaaggtaccaaagggcagctgagtgtattcccaa Alignment from Spaln_nt2Genome CTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGA-GCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTCTGTACCGTGTAAAACATAAAGGATGATGTCTTCTTCTAGGGTGTTA---CTCGTAATATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATCCAAGCACTCATGGGAGGGTGAAGA---ATTAGACATACAGgtgaggaacaatttcaaaaggtaccaaagggcagctgagtgtattcccaa Alignment from Pairagon CGTGAAGGCGCGGAACCTT-------------------------------------------------ATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGAT-TGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ------------------TGTAAAACATAAAGGATGATGTCTTCTTCTAGGGTGTTACTCGTAATATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATCCAAGCACTCATGGGAG-----------------------Ggtgaagaattagacatacaggtgaggaacaatttcaaaaggtaccaaagggcagctgagtgtattcccaa Alignment from Exonerate_protein2genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAG-CACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTCTGTACCGTgtaaaacataaaggatgatgtcttcttctagGGTGTT---ACTCGTAATATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATCCAAGCACTCATGGGAG---GGTGAAGAATTAGACATACAGgtgaggaacaatttcaaaaggtaccaaagggcagctgagtgtattcccaa Alignment from Exonerate_coding2genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAG-CACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTCTGTACCGTgtaaaacataaaggatgatgtcttcttctagGGTGTT---ACTCGTAATATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATCCAAGCACTCATGGGAG---GGTGAAGAATTAGACATACAGgtgaggaacaatttcaaaaggtaccaaagggcagctgagtgtattcccaa Alignment from GeneWise CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATT-GAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTCTGTACCGTgtaaaacataaaggatgatgtcttcttctagGGTGTT---ACTCGTAATATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATCCAAGCACTCATGGGAG---GGTGAAGAATTAGACATACAGgtgaggaacaatttcaaaaggtaccaaagggcagctgagtgtattcccaa #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA-GCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAACTCATTAGTTGACCATGGGGAAGAATTTGCTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGggtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from CESAR TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA-GCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAACTCATTAGTTGACCATGGGGAAGAATTTGCTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGggtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Spaln_aa2Genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA-GCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAAcTCATTAGTTGACCATGGGGAAGAATTTGCTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATG---GCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTC--TGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAA-CTCATTAGTTGACCATGGGGAAGAATTTGCTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Pairagon TTATCAAAAGTTT---ATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTC--TGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAA-CTCATTAGTTGACCATGGGGAAGAATTTGCTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Exonerate_protein2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA-GCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAACTCATTAGTTGACCATGGGGAAGAATTTGCTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from Exonerate_coding2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA-GCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAACTCATTAGTTGACCATGGGGAAGAATTTGCTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGgtatcaataggtttgcaataccagtgaaagaatgtgtgagtccatcccag Alignment from GeneWise TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA-GCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATG--------------------------------------------------- attgcattgcagtcaaatctttctagtcaataactttaatcttcttctagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAACTCATTAGTTGACCATGGGGAAGAATTTGCTGGGAGAGAAAGACTACCCGTTTTTGATAAAGCTACCAATGGAATGGGTATCAATAGGTTTGCAATACCAGTGAAAGAATGTGTGAGTCCATCCCAG #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgtagcaccaaggttgttcatgtatctccttctgtgccccgaacaggcATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTCATGACATTGCGGCAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGACTAATggtacaaaaaaaaaaagggaggtagccaactgggtcttgcaaatcctgtct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgtagcaccaaggttgttcatgtatctccttctgtgccccgaacaggcATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTCATGACATTGCGGCAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGACTAATggtacaaaaaaaaaaagggaggtagccaactgggtcttgcaaatcctgtct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgtagcaccaaggttgttcatgtatctccttctgtgccccgaacagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTCATGACATTGCGGcAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGACTAATGgtacaaaaaaaaaaagggaggtagccaactgggtcttgcaaatcctgtct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgtagcaccaaggttgttcatgtatctccttctgtgccccgaacagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTCATGACATTGCGGCAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGACTAATGgtacaaaaaaaaaaagggaggtagccaactgggtcttgcaaatcctgtct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgtagcaccaaggttgttcatgtatctccttctgtgccccgaacagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTCATGACATTGCGGCAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGACTAATGgtacaaaaaaaaaaagggaggtagccaactgggtcttgcaaatcctgtct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgtagcaccaaggttgttcatgtatctccttctgtgccccgaacagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTCATGACATTGCGGCAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGACTAATGgtacaaaaaaaaaaagggaggtagccaactgggtcttgcaaatcctgtct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgtagcaccaaggttgttcatgtatctccttctgtgccccgaacagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTCATGACATTGCGGCAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGACTAATGgtacaaaaaaaaaaagggaggtagccaactgggtcttgcaaatcctgtct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTG-CGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgtagcaccaaggttgttcatgtatctccttctgtgccccgaacagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTCATGACATTGCGGCAATTTAGGTATGGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTGAGAAAGACTAATGgtacaaaaaaaaaaagggaggtagccaactgggtcttgcaaatcctgtct #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAA-CGCTCCAAAAAAg atgcccaactcctgcctacatgtacacatgagctactcccttccctgcagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCAGGTCAAAAAAGggtaaaaaaacttaagtcctgaaagctagctcggggatgttggcttacatc Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAA-CGCTCCAAAAAAg atgcccaactcctgcctacatgtacacatgagctactcccttccctgcagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCAGGTCAAAAAAGggtaaaaaaacttaagtcctgaaagctagctcggggatgttggcttacatc Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAA-CGCTCCAAAAAAG atgcccaactcctgcctacatgtacacatgagctactcccttccctgcagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGcAGGTCAAAAAAGGgtaaaaaaacttaagtcctgaaagctagctcggggatgttggcttacatc Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAAC-GCTCCAAAAAAG atgcccaactcctgcctacatgtacacatgagctactcccttccctgcagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCAGGTCAAAAAAGGgtaaaaaaacttaagtcctgaaagctagctcggggatgttggcttacatc Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAAC-GCTCCAAAAAAG atgcccaactcctgcctacatgtacacatgagctactcccttccctgcagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCAGGTCAAAAAAGGgtaaaaaaacttaagtcctgaaagctagctcggggatgttggcttacatc Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG atgcccaactcctgcctacatgtacacatgagctactcccttccctgcagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCAGGTCAAAAAAGggtaaaaaaacttaagtcctgaaagctagctcggggatgttggcttacatc Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGG atgcccaactcctgcctacatgtacacatgagctactcccttccctgcagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCAGGTCAAAAAAGGgtaaaaaaacttaagtcctgaaagctagctcggggatgttggcttacatc Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGG atgcccaactcctgcctacatgtacacatgagctactcccttccctgcagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAGAATTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCAGGTCAAAAAAGGgtaaaaaaacttaagtcctgaaagctagctcggggatgttggcttacatc #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGAC-AAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tgttgcttatcaactccaaagtgcattatgtaatgtcttgatttttatagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATCAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTTTATCCCCGAAAgtaatagctattgtatccaactttacactgtacttttgttaaactaccac Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGAC-AAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tgttgcttatcaactccaaagtgcattatgtaatgtcttgatttttatagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATCAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTTTATCCCCGAAAgtaatagctattgtatccaactttacactgtacttttgttaaactaccac Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGAC-AAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tgttgcttatcaactccaaagtgcattatgtaatgtcttgatttttatagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATcAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTTTATCCCCGAAAgtaatagctattgtatccaactttacactgtacttttgttaaactaccac Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGA-CAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tgttgcttatcaactccaaagtgcattatgtaatgtcttgatttttatagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATCAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTTTATCCCCGAAAgtaatagctattgtatccaactttacactgtacttttgttaaactaccac Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGA-CAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tgttgcttatcaactccaaagtgcattatgtaatgtcttgatttttatagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATCAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTTTATCCCCGAAAgtaatagctattgtatccaactttacactgtacttttgttaaactaccac Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGAC-AAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tgttgcttatcaactccaaagtgcattatgtaatgtcttgatttttatagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATCAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTTTATCCCCGAAAgtaatagctattgtatccaactttacactgtacttttgttaaactaccac Alignment from Exonerate_coding2genome tgttgcttatcaactccaaagtgcattatgtaatgtcttgatttttataggtctatgaaactcccttttatgttgctgttgaccatgatcaagaagaaagtggtggtcagcatccggggaactttatccccgaaagtaatagctattgtatccaactttacactgtacttttgttaaactaccac Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGAC-AAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tgttgcttatcaactccaaagtgcattatgtaatgtcttgatttttatagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATCAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTTTATCCCCGAAAgtaatagctattgtatccaactttacactgtacttttgttaaactaccac #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAG-GTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtagttcagataactggcctcctattccctcagccATCCAGGGGTGGTTGAAGGAGGGCCCATCACTGACCAGCCCGACCCAGCCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgaagaagaacagtccttaggactattgtacaaagccttactacatggc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAG-GTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtagttcagataactggcctcctattccctcagccATCCAGGGGTGGTTGAAGGAGGGCCCATCACTGACCAGCCCGACCCAGCCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgaagaagaacagtccttaggactattgtacaaagccttactacatggc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAG-GTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtagttcagataactggcctcctattccctcagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCACTGACCAGCCCGACCCAGcCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgaagaagaacagtccttaggactattgtacaaagccttactacatggc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGG-TACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtagttcagataactggcctcctattccctcagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCACTGACCAGCCCGACCCAGCCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgaagaagaacagtccttaggactattgtacaaagccttactacatggc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAG-GTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtagttcagataactggcctcctattccctcagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCACTGACCAGCCCGACCCAGCCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgaagaagaacagtccttaggactattgtacaaagccttactacatggc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAG-GTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtagttcagataactggcctcctattccctcagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCACTGACCAGCCCGACCCAGCCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgaagaagaacagtccttaggactattgtacaaagccttactacatggc Alignment from Exonerate_coding2genome agaaattaaagtggcttgtagttcagataactggcctcctattccctcagccatccaggggtggttgaaggagggcccatcactgaccagcccgacccagcctactctccagattgcctgtcctgctgctggagaggatgggagcttcatctggggcagtgaagaagaacagtccttaggactattgtacaaagccttactacatggc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAG-GTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaattaaagtggcttgtagttcagataactggcctcctattccctcagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCACTGACCAGCCCGACCCAGCCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgaagaagaacagtccttaggactattgtacaaagccttactacatggc #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg caaccccttctaaattaccaactatcccgttatcccacatctgtcaacaggtACCCTAGGTGTCACCTTGTCATCCTGTAGTGTGCCTGGCACCACACACACTCTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGggtatggatgctgtcataatgcatgttacgttgtgtcagctgccaggcaca Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg caaccccttctaaattaccaactatcccgttatcccacatctgtcaacaggtACCCTAGGTGTCACCTTGTCATCCTGTAGTGTGCCTGGCACCACACACACTCTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGggtatggatgctgtcataatgcatgttacgttgtgtcagctgccaggcaca Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccttctaaattaccaactatcccgttatcccacatctgtcaacagGTACCCTAGGTGTCACCTTGTCATCCTGTAGTGTGCCTGGCACCACACACACTcTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtatggatgctgtcataatgcatgttacgttgtgtcagctgccaggcaca Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACAC-CTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccttctaaattaccaactatcccgttatcccacatctgtcaacagGTACCCTAGGTGTCACCTTGTCATCCTGTAGTGTGCCTGGCACCACACACACTCTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtatggatgctgtcataatgcatgttacgttgtgtcagctgccaggcaca Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACAC-CTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccttctaaattaccaactatcccgttatcccacatctgtcaacagGTACCCTAGGTGTCACCTTGTCATCCTGTAGTGTGCCTGGCACCACACACACTCTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtatggatgctgtcataatgcatgttacgttgtgtcagctgccaggcaca Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccttctaaattaccaactatcccgttatcccacatctgtcaacagGTACCCTAGGTGTCACCTTGTCATCCTGTAGTGTGCCTGGCACCACACACACTCTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtatggatgctgtcataatgcatgttacgttgtgtcagctgccaggcaca Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG caaccccttctaaattaccaactatcccgttatcccacatctgtcaacagGTACCCTAGGTGTCACCTTGTCATCCTGTAGTGTGCCTGGCACCACACACACTCTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtatggatgctgtcataatgcatgttacgttgtgtcagctgccaggcaca Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACAC-ACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGGGGATCCATGGGGAAGCTGGTGTTCGTCGGATAAAGATAG caaccccttctaaattaccaactatcccgttatcccacatctgtcaacagGTACCCTAGGTGTCACCTTGTCATCCTGTAGTGTGCCTGGCACCACACACACTCTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGGTATG------GATGCTGTCATAATGCATGTTACGTTGTgtcagctgcca #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCC-ATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from CESAR CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCC-ATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCC-ATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTcATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACC-CATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Pairagon CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACC-CATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCC-ATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCC-ATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCC-ATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGG-ACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtttagcactcatttcttctattaatgtacaagtcctttttgatactcagtCACACAGAAATGGAACATGAAGTGGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGCACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAggcaagtcttttatttactttcaggacaacaccctagtaaggttaaacaag Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGG-ACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtttagcactcatttcttctattaatgtacaagtcctttttgatactcagtCACACAGAAATGGAACATGAAGTGGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGCACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAggcaagtcttttatttactttcaggacaacaccctagtaaggttaaacaag Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGG-ACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtttagcactcatttcttctattaatgtacaagtcctttttgatactcagTCACACAGAAATGGAACATGAAGTGGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGcACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgcaagtcttttatttactttcaggacaacaccctagtaaggttaaacaag Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGG-ACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtttagcactcatttcttctattaatgtacaagtcctttttgatactcagTCACACAGAAATGGAACATGAAGTGGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGCACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgcaagtcttttatttactttcaggacaacaccctagtaaggttaaacaag Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGG-ACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtttagcactcatttcttctattaatgtacaagtcctttttgatactcagTCACACAGAAATGGAACATGAAGTGGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGCACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgcaagtcttttatttactttcaggacaacaccctagtaaggttaaacaag Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGG-ACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtttagcactcatttcttctattaatgtacaagtcctttttgatactcagTCACACAGAAATGGAACATGAAGTGGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGCACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgcaagtcttttatttactttcaggacaacaccctagtaaggttaaacaag Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGG-ACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtttagcactcatttcttctattaatgtacaagtcctttttgatactcagTCACACAGAAATGGAACATGAAGTGGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGCACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgcaagtcttttatttactttcaggacaacaccctagtaaggttaaacaag Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGG-ACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAGAG-- gtttagcactcatttcttctattaatgtacaagtcctttttgatactcagTCACACAGAAATGGAACATGAAGTGGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGCACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGGCAAgtcttttatttactttcaggacaacaccctagtaaggttaaacaag #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGC-CACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg cttggtccatcctgatggccctagtacatttttgtttttgtttttttaagagATCATTCCTCGATCCATATTGATGACCACTTTTGAAGGTAGCCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAATATTGAGACAggtacagctggagatgattctaatgctgggtattttccataataaggatcc Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGC-CACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg cttggtccatcctgatggccctagtacatttttgtttttgtttttttaagagATCATTCCTCGATCCATATTGATGACCACTTTTGAAGGTAGCCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAATATTGAGACAggtacagctggagatgattctaatgctgggtattttccataataaggatcc Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGC-CACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG cttggtccatcctgatggccctagtacatttttgtttttgtttttttaagAGATCATTCCTCGATCCATATTGATGACCACTTTTGAAGGTAGCcCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAATATTGAGACAGgtacagctggagatgattctaatgctgggtattttccataataaggatcc Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCC-ACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG cttggtccatcctgatggccctagtacatttttgtttttgtttttttaagAGATCATTCCTCGATCCATATTGATGACCACTTTTGAAGGTAGCCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAATATTGAGACAGgtacagctggagatgattctaatgctgggtattttccataataaggatcc Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAG-CCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG cttggtccatcctgatggccctagtacatttttgtttttgtttttttaagAGATCATTCCTCGATCCATATTGATGACCACTTTTGAAGGTAGCCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAATATTGAGACAGgtacagctggagatgattctaatgctgggtattttccataataaggatcc Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGC-CACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG cttggtccatcctgatggccctagtacatttttgtttttgtttttttaagAGATCATTCCTCGATCCATATTGATGACCACTTTTGAAGGTAGCCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAATATTGAGACAGgtacagctggagatgattctaatgctgggtattttccataataaggatcc Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGC-CACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG cttggtccatcctgatggccctagtacatttttgtttttgtttttttaagAGATCATTCCTCGATCCATATTGATGACCACTTTTGAAGGTAGCCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAATATTGAGACAGgtacagctggagatgattctaatgctgggtattttccataataaggatcc Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAG-AGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG cttggtccatcctgatggccctagtacatttttgtttttgtttttttaagAGATCATTCCTCGATCCATATTGATGACCACTTTTGAAGGTAGCCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAATATTGAGACAGgtacagctggagatgattctaatgctgggtattttccataataaggatcc #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tattgtagctataattggaccctggaattccctgttgtctgtgaaatcagtCTGGCATTGGCCAATAACAGTACTCTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTaggtaagtttacacctgagaagtgggaaagggggagggttaatgaaggtttc Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tattgtagctataattggaccctggaattccctgttgtctgtgaaatcagtCTGGCATTGGCCAATAACAGTACTCTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTaggtaagtttacacctgagaagtgggaaagggggagggttaatgaaggtttc Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctataattggaccctggaattccctgttgtctgtgaaatcagTCTGGCATTGGCCAATAACAGTACTCTCcACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaagtttacacctgagaagtgggaaagggggagggttaatgaaggtttc Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCT-CACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctataattggaccctggaattccctgttgtctgtgaaatcagTCTGGCATTGGCCAATAACAGTACTCTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaagtttacacctgagaagtgggaaagggggagggttaatgaaggtttc Alignment from Pairagon TCTGGCATTGGCCAATAACAGCACTCT-CACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctataattggaccctggaattccctgttgtctgtgaaatcagTCTGGCATTGGCCAATAACAGTACTCTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaagtttacacctgagaagtgggaaagggggagggttaatgaaggtttc Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctataattggaccctggaattccctgttgtctgtgaaatcagTCTGGCATTGGCCAATAACAGTACTCTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaagtttacacctgagaagtgggaaagggggagggttaatgaaggtttc Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctataattggaccctggaattccctgttgtctgtgaaatcagTCTGGCATTGGCCAATAACAGTACTCTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaagtttacacctgagaagtgggaaagggggagggttaatgaaggtttc Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACT-CTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctataattggaccctggaattccctgttgtctgtgaaatcagTCTGGCATTGGCCAATAACAGTACTCTCCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaagtttacacctgagaagtgggaaagggggagggttaatgaaggtttc #### Ddb1_ID2936_21 --> 2 - 0 Original Alignment gaAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcaggaAAGCTG---ACTGTCACTGATAAGCGAAGTGAAAGGAGCGGTGTACTCCATGGTGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from CESAR gaAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcaggaAAGCTG---ACTGTCACTGATAAGCGAAGTGAAAGGAGCGGTGTACTCCATGGTGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Spaln_aa2Genome GAAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCTG---ACTGTCACTGATAAGcGAAGTGAAAGGAGCGGTGTACTCCATGGTGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Spaln_nt2Genome GAAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCT---GACTGTCACTGATAAGCGAAGTGAAAGGAGCGGTGTACTCCATGGTGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Pairagon GAAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCT---GACTGTCACTGATAAGCGAAGTGAAAGGAGCGGTGTACTCCATGGTGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Exonerate_protein2genome GAAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCTG---ACTGTCACTGATAAGCGAAGTGAAAGGAGCGGTGTACTCCATGGTGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from Exonerate_coding2genome GAAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcagGAAAGCTG---ACTGTCACTGATAAGCGAAGTGAAAGGAGCGGTGTACTCCATGGTGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc Alignment from GeneWise ACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG aggcacctgaggaaaagcctattaagaactcttcttccccactcctgcaggaaagctgactgtcactgataagC---------------------GAAGTGAAAGGAGCGGTGTACTCCATGGTGGAGTTTAATGGGAAATTATTGGCCAGCACCAATAGCACAgtatggggcaagggtttacatgctcgtggattgattcttctcttctgagc #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagtGCCGCAACGACTGTTGAGCGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtaagcgctcaagctcttgtgagatggcttgcttatgcaaaaaccaacgt Alignment from CESAR tGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagtGCCGCAACGACTGTTGAGCGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtaagcgctcaagctcttgtgagatggcttgcttatgcaaaagtaacttt Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGcGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaaaccaacgt Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGCGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaaaccaacgt Alignment from Pairagon TGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGCGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaaaccaacgt Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGCGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaaaccaacgt Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagTGCCGCAACGACTGTTGAGCGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaaaccaacgt Alignment from GeneWise GGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG tagagcctggtagagagaagtgctctggcctcacctgcccatggccccagtgccgcaacgactgttgagCGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCACCTAGGTGAGTTTGTCATTGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagcgctcaagctcttgtgagatggcttgcttatgcaaaaaccaacgt #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCAC-AACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggaagcaactccccacttgactattttttcctccttaggtATATGCATGCCGTCCGAACATAGCCACTTCCCATGTGGGGAAGTCGAAGAAAGGACTATTGAAATGCTTGGTAATGACCACCAATGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCATTGGCTTCAAAGATTTATCATACTAAAggtaaccgagcagcttaagaacttcacacttaatctacaaaaacaatgaga Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCAC-AACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggaagcaactccccacttgactattttttcctccttaggtATATGCATGCCGTCCGAACATAGCCACTTCCCATGTGGGGAAGTCGAAGAAAGGACTATTGAAATGCTTGGTAATGACCACCAATGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCATTGGCTTCAAAGATTTATCATACTAAAggtaaccgagcagcttaagaacttcacacttaatctacaaaaacaatgaga Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCAC-AACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacttgactattttttcctccttagGTATATGCATGCCGTCCGAACATAGCCACTTCCCATGTGGGGAAGTCGAAGAAAGGACTATTGAAATGCTTGGTAATGACCACcAATGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaccgagcagcttaagaacttcacacttaatctacaaaaacaatgaga Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCAC-AACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacttgactattttttcctccttagGTATATGCATGCCGTCCGAACATAGCCACTTCCCATGTGGGGAAGTCGAAGAAAGGACTATTGAAATGCTTGGTAATGACCACCAATGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaccgagcagcttaagaacttcacacttaatctacaaaaacaatgaga Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCA-CAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacttgactattttttcctccttagGTATATGCATGCCGTCCGAACATAGCCACTTCCCATGTGGGGAAGTCGAAGAAAGGACTATTGAAATGCTTGGTAATGACCACCAATGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaccgagcagcttaagaacttcacacttaatctacaaaaacaatgaga Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCAC-AACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacttgactattttttcctccttagGTATATGCATGCCGTCCGAACATAGCCACTTCCCATGTGGGGAAGTCGAAGAAAGGACTATTGAAATGCTTGGTAATGACCACCAATGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaccgagcagcttaagaacttcacacttaatctacaaaaacaatgaga Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCAC-AACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacttgactattttttcctccttagGTATATGCATGCCGTCCGAACATAGCCACTTCCCATGTGGGGAAGTCGAAGAAAGGACTATTGAAATGCTTGGTAATGACCACCAATGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaccgagcagcttaagaacttcacacttaatctacaaaaacaatgaga Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCAC-AACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacttgactattttttcctccttagGTATATGCATGCCGTCCGAACATAGCCACTTCCCATGTGGGGAAGTCGAAGAAAGGACTATTGAAATGCTTGGTAATGACCACCAATGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtaaccgagcagcttaagaacttcacacttaatctacaaaaacaatgaga #### Dock8_ID5395_16 --> 0 - 2 Original Alignment GTCATCTTTGGC-AAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgattgtagagcccaaaaatatcccaagactttctttcattttacaaagGTGATCTATGGACAAGTCAAGG---CCTGAATTTTTGCAGGAAGTCTATACAGCTATTACATACCATAACaagtgagcaataggaatctcagactcccgctatgaaaacctatcctcttaca Alignment from CESAR GTCATCTTTGGC-AAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgattgtagagcccaaaaatatcccaagactttctttcattttacaaagGTGATCTATGGACAAGTCA---AGGCCTGAATTTTTGCAGGAAGTCTATACAGCTATTACATACCATAACaagtgagcaataggaatctcagactcccgctatgaaaacctatcctcttaca Alignment from Spaln_aa2Genome GCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatatcccaagactttctttcattttacaaaggtgatctatggacaagtcaagGCCTGAATTTTTGCAGGAAGTCTATACAGCTATTACATACCATAACAAgtgagcaataggaatctcagactcccgctatgaaaacctatcctcttaca Alignment from Spaln_nt2Genome GTCATCTTTGG-CAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatatcccaagactttctttcattttacaaagGTGATCTATGGACAAGTCAA---GGCCTGAATTTTTGCAGGAAGTCTATACAGCTATTACATACCATAACAAgtgagcaataggaatctcagactcccgctatgaaaacctatcctcttaca Alignment from Pairagon GTCATCTTTGG-CAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatatcccaagactttctttcattttacaaagGTGATCTATGGACAAGTCAA---GGCCTGAATTTTTGCAGGAAGTCTATACAGCTATTACATACCATAACAAgtgagcaataggaatctcagactcccgctatgaaaacctatcctcttaca Alignment from Exonerate_protein2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatatcccaagactttctttcattttacaaAGGTGATCTATGGACAAGTCAAGGCCTGAATTTTTGCAGGAAGTCTATACAGCTATTACATACCATAACAAgtgagcaataggaatctcagactcccgctatgaaaacctatcctcttaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgattgtagagcccaaaaatatcccaagactttctttcattttacaaaggtgatctatggacaagTCAAGGCCTGAATTTTTGCAGGAAGTCTATACAGCTATTACATACCATAACAAgtgagcaataggaatctcagactcccgctatgaaaacctatcctcttaca #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGA-TTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagccAAGAAAGGACCTGATGGACTTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from CESAR ccAAGAAAGGACCTGATGGA-TTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagccAAGAAAGGACCTGATGGACTTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Spaln_aa2Genome GAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagccaagAAAGGACCTGATGGACTTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGA-TTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGACTTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Pairagon CCAAGAAAGGACCTGATGGA-TTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGACTTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGA-TTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGACTTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGA-TTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGACTTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from GeneWise GAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagccaagAAAGGACCTGATGGACTTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGcGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGAC-TGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACT-GTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGCGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTAC-GTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATCGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAaggtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTAC-GTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATCGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAaggtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTAC-GTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATcGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTA-CGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATCGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTA-CGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATCGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTAC-GTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATCGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTAC-GTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATCGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTAC-GTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgtggatcaatcgaaatgaggattgtactgtctccctgtccccagGCCTATGCAGCCAACTGCCACCAGAAACAAATGCTGTCCCAGTATCGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCTATTGTAAAAAGgtaagttgtcatccaagcctcccaatatctcttccaatacaccctctagg #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGg actaactaagatagcaataataatgatgactgtttctttattggttatagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAggtaggtcctagtccctacctatgctctctgtaagtagaagattcaagaat Alignment from CESAR GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGg actaactaagatagcaataataatgatgactgtttctttattggttatagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAggtaggtcctagtccctacctatgctctctgtaagtagaagattcaagaat Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG actaactaagatagcaataataatgatgactgtttctttattggttatagGAGTGTGCAGATGGCTGCGAAcTGGGATGCAGATAGCCAACATTGCCAAGgtaggtcctagtccctacctatgctctctgtaagtagaagattcaagaat Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG actaactaagatagcaataataatgatgactgtttctttattggttatagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAGgtaggtcctagtccctacctatgctctctgtaagtagaagattcaagaat Alignment from Pairagon GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG actaactaagatagcaataataatgatgactgtttctttattggttatagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAGgtaggtcctagtccctacctatgctctctgtaagtagaagattcaagaat Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG actaactaagatagcaataataatgatgactgtttctttattggttatagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAGgtaggtcctagtccctacctatgctctctgtaagtagaagattcaagaat Alignment from Exonerate_coding2genome actaactaagatagcaataataatgatgactgtttctttattggttataggagtgtgcagatggctgcgaactgggatgcagatagccaacattgccaaggtaggtcctagtccctacctatgctctctgtaagtagaagattcaagaat Alignment from GeneWise actaactaagatagcaataataatgatgactgtttctttattggttataggagtgtgcagatggctgcgaactgggatgcagatagccaacattgccaaggtaggtcctagtccctacctatgctctctgtaagtagaagattcaagaat #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGC-TGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa taccatgagtatggaactaagactctccgacatgctctcctgtttcctagagTTAGGAGACTGTGAGACAGGTGTCCACCGATGTTCTGAGGCCCAAACTTGTGTCAACTTCCATGCTGGTTACCGCCTGTGTCGAGATCAACCGCTGTGTAGAGCCATATGTTCATGTATCGGACaagtgaggacacctggcacttgctgacttgcataggtcaagatgttagtggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGC-TGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa taccatgagtatggaactaagactctccgacatgctctcctgtttcctagagTTAGGAGACTGTGAGACAGGTGTCCACCGATGTTCTGAGGCCCAAACTTGTGTCAACTTCCATGCTGGTTACCGCCTGTGTCGAGATCAACCGCTGTGTAGAGCCATATGTTCATGTATCGGACaagtgaggacacctggcacttgctgacttgcataggtcaagatgttagtggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGC-TGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA taccatgagtatggaactaagactctccgacatgctctcctgtttcctagAGTTAGGAGACTGTGAGACAGGTGTCCACCGATGTTCTGAGGCCCAAACTTGTGTCAACTTCCATGCTGGTTACCGCcTGTGTCGAGATCAACCGCTGTGTAGAGCCATATGTTCATGTATCGGACAAgtgaggacacctggcacttgctgacttgcataggtcaagatgttagtggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGC-TGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA taccatgagtatggaactaagactctccgacatgctctcctgtttcctagAGTTAGGAGACTGTGAGACAGGTGTCCACCGATGTTCTGAGGCCCAAACTTGTGTCAACTTCCATGCTGGTTACCGCCTGTGTCGAGATCAACCGCTGTGTAGAGCCATATGTTCATGTATCGGACAAgtgaggacacctggcacttgctgacttgcataggtcaagatgttagtggg Alignment from Pairagon -----------------------------------------------------TTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCG-CTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA TACCATGAGTATGGAACTAAGACTCTCCGACATGCTCTCCTGTTTCCTAGAGTTAGGAGACTGTGAGACAGGTGTCCACCGATGTTCTGAGGCCCAAACTTGTGTCAACTTCCATGCTGGTTACCGCCTGTGTCGAGATCAACCGCTGTGTAGAGCCATATGTTCATGTATCGGACAAgtgaggacacctggcacttgctgacttgcataggtcaagatgttagtggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGC-TGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA taccatgagtatggaactaagactctccgacatgctctcctgtttcctagAGTTAGGAGACTGTGAGACAGGTGTCCACCGATGTTCTGAGGCCCAAACTTGTGTCAACTTCCATGCTGGTTACCGCCTGTGTCGAGATCAACCGCTGTGTAGAGCCATATGTTCATGTATCGGACAAgtgaggacacctggcacttgctgacttgcataggtcaagatgttagtggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGC-TGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA taccatgagtatggaactaagactctccgacatgctctcctgtttcctagAGTTAGGAGACTGTGAGACAGGTGTCCACCGATGTTCTGAGGCCCAAACTTGTGTCAACTTCCATGCTGGTTACCGCCTGTGTCGAGATCAACCGCTGTGTAGAGCCATATGTTCATGTATCGGACAAgtgaggacacctggcacttgctgacttgcataggtcaagatgttagtggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA taccatgagtatggaactaagactctccgacatgctctcctgtttcctagAGTTAGGAGACTGTGAGACAGGTGTCCACCGATGTTCTGAGGCCCAAACTTGTGTCAACTTCCATGCTGGTTACCGCCTGTGTCGAGATCAACCGCTGTGTAGAGCCATATGTTCATGTATCGGACAAgtgaggacacctggcacttgctgacttgcataggtcaagatgttagtggg #### Ehbp1l1_ID1229_6 --> 1 - 1 Original Alignment gGATGATGACATGCAG-AGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagaGATGATGATATGCAACAGTCTCGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTggtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from CESAR gGATGATGACATGCAG-AGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagaGATGATGATATGCAACAGTCTCGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTggtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Spaln_aa2Genome GGATGATGACATGCAG-AGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagAGATGATGATATGCAAcAGTCTCGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTGgtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Spaln_nt2Genome GGATGATGACATGCAG-AGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagAGATGATGATATGCAACAGTCTCGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTGgtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Pairagon GGATGATGACATGCAG-AGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagAGATGATGATATGCAACAGTCTCGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTGgtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Exonerate_protein2genome tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagagatgatgatatgcaacagtctcgccagcctcatgagtgtgaagcctagtgatgtgggaaacctggatgactttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggttcagaccagaggcccccggtctggtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from Exonerate_coding2genome tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagagatgatgatatgcaacagtctcgccagcctcatgagtgtgaagcctagtgatgtgggaaacctggatgactttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggttcagaccagaggcccccggtctggtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc Alignment from GeneWise GGATGATGACATGCAG-AGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgatgtgcgaagtctggcccaatcatttcttctctccccagAGATGATGATATGCAACAGTCTCGCCAGCCTCATGAGTGTGAAGCCTAGTGATGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCGGTCTGgtatgaataccgttgttcagattgccagtacctaaggtggatactagtcc #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAG-GTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAACGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCAGGGCCCCTACCTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACTTGCAGTC---CTTCTACAAGAAGGCCGTGCCatgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from CESAR GAGTCCAAGGGACAGCGGAAG-GTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAACGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCAGGGCCCCTACCTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCatgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAG-GTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAAcGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCAGGGCCCCTACCTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCATgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAG-GTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAACGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCAGGGCCCCTACCTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACT---TGCAGTCCTTCTACAAGAAGGCCGTGCCATgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Pairagon GAGTCCAAGGGACAGCGGAAG-GTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAACGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCAGGGCCCCTACCTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACT---TGCAGTCCTTCTACAAGAAGGCCGTGCCATgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Exonerate_protein2genome ctcccccacccctgccagagcagagaacaagatatttcactttactttaggagtcaaagggacagcggaaacgtattagcaacagttggtgtcaattcagaccatcatgcagggcccctacctgcccagatctcacttcaattgcggcagaagcccaagtccgtcaaagttgtgcatgctgagcttagcctcacacttgcagtccttctacaagaaggccgtgccatgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from Exonerate_coding2genome ctcccccacccctgccagagcagagaacaagatatttcactttactttaggagtcaaagggacagcggaaacgtattagcaacagttggtgtcaattcagaccatcatgcagggcccctacctgcccagatctcacttcaattgcggcagaagcccaagtccgtcaaagttgtgcatgctgagcttagcctcacacttgcagtccttctacaagaaggccgtgccatgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta Alignment from GeneWise GAGTCCAAGGGACAGCGGAAG-GTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagagcagagaacaagatatttcactttactttagGAGTCAAAGGGACAGCGGAAACGTATTAGCAACAGTTGGTGTCAATTCAGACCATCATGCAGGGCCCCTACCTGCCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCGTCAAAGTTGTGCATGCTGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCATgtttgtggacctatcctctgtcttgcacttaggcttgtcagcaggcatta #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCA-CAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCA-CAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCA-CAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTcCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCAC-AGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGC-ACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCA-CAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCA-CAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACA-GCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caagttctggataatgagccggctagattgcggtttcttccttccctcagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagctctatttgctttttgaactaccaaaaactcttagccaacatgat #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACT-TCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from CESAR GTACGTATTGACCATACT-TCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Spaln_aa2Genome GTACGTATTGACCATACT-TCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCcTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Spaln_nt2Genome GTACGTATTGACCATACT-TCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Pairagon GTACGTATTGACCATA-CTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Exonerate_protein2genome GTACGTATTGACCATACT-TCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Exonerate_coding2genome GTACGTATTGACCATACT-TCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from GeneWise ---------TCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacaggtacgtatagACCATACCCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTA-GATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGCGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTA-GATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGCGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTA-GATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGcGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTA-GATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGCGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTA-GATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGCGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTA-GATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGCGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTA-GATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGCGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTG-TTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcatttttccttccatttccttcctcagGTGAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGCGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtacgaattaatagggtcttttttatcgtcagacaaactgttacaattat #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGG-GGTCACACAGACTGCGTTCGAtg ttccttctgctaacccccttccatggccttcattttctctttttccaaagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGCGGTCACACAGACTGTGTTCGAtggtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGG-GGTCACACAGACTGCGTTCGAtg ttccttctgctaacccccttccatggccttcattttctctttttccaaagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGCGGTCACACAGACTGTGTTCGAtggtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGG-GGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGcGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGG-GGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGCGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGG-GGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGCGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGG-GGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGCGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGG-GGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGCGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTAC-CGGGGTCACACAGACTGCGTTCGATG ttccttctgctaacccccttccatggccttcattttctctttttccaaagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCGGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGCGGTCACACAGACTGTGTTCGATGgtaagcattgtggtaaatactttattcctgttgccttcaaggaacatctt #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACA-CTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatggatcaagttttctgccccgctcccagcttccttcctgtctcagCCCCTGCAGCCGGTGGTTCATACCTGGGACTCAGAAACACCTCCTAAAACTACAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgagtcaggcatgggggcatgtttgtgaccttattatgttgtttgataa Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACA-CTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatggatcaagttttctgccccgctcccagcttccttcctgtctcagCCCCTGCAGCCGGTGGTTCATACCTGGGACTCAGAAACACCTCCTAAAACTACAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgagtcaggcatgggggcatgtttgtgaccttattatgttgtttgataa Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACA-CTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatggatcaagttttctgccccgctcccagcttccttcctgtctcagCCCCTGCAGCCGGTGGTTCATACCTGGGACTCAGAAACAcCTCCTAAAACTACAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgagtcaggcatgggggcatgtttgtgaccttattatgttgtttgataa Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACAC-TCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatggatcaagttttctgccccgctcccagcttccttcctgtctcagCCCCTGCAGCCGGTGGTTCATACCTGGGACTCAGAAACACCTCCTAAAACTACAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgagtcaggcatgggggcatgtttgtgaccttattatgttgtttgataa Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACA-CTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatggatcaagttttctgccccgctcccagcttccttcctgtctcagCCCCTGCAGCCGGTGGTTCATACCTGGGACTCAGAAACACCTCCTAAAACTACAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgagtcaggcatgggggcatgtttgtgaccttattatgttgtttgataa Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACA-CTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatggatcaagttttctgccccgctcccagcttccttcctgtctcagCCCCTGCAGCCGGTGGTTCATACCTGGGACTCAGAAACACCTCCTAAAACTACAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgagtcaggcatgggggcatgtttgtgaccttattatgttgtttgataa Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACA-CTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatggatcaagttttctgccccgctcccagcttccttcctgtctcagCCCCTGCAGCCGGTGGTTCATACCTGGGACTCAGAAACACCTCCTAAAACTACAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgagtcaggcatgggggcatgtttgtgaccttattatgttgtttgataa Alignment from GeneWise --------------------------------------------------CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACA-CTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG GATTATGGATCAAGTTTTCTGCCCCGCTCCCAGCTTCCTTCCTGTCTCAGCCCCTGCAGCCGGTGGTTCATACCTGGGACTCAGAAACACCTCCTAAAACTACAGGAAATTGGCCTGGGTGCCTCTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgagtcaggcatgggggcatgtttgtgaccttattatgttgtttgataa #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGT-GGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGT-GGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGT-GGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCcGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAA-TCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Pairagon AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAG-TGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGT-GGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Exonerate_coding2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGT-GGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACC-AGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGAT-TCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACCTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACAACAGGCAGGGGAGGAGCAAAAggtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGAT-TCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACCTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACAACAGGCAGGGGAGGAGCAAAAggtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGAT-TCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACcTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGAT-TCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACCTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGA-TTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACCTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGAT-TCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACCTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGAT-TCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACCTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGAT-TCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccgtgcctgccgatctattctgtttgtttttctgttctgtttacagAAAGACAAAAAACCTAAATTTATCCCATGCTTCATATTCTTGCCTGATGGAGACATTCTAACTGGGGACCTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACAACAGGCAGGGGAGGAGCAAAAGgtgagctaaggcaggtgagtacggtactgcagctgggagagtcagggaat #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGG-ACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG ttatgctccatgatatagcaaatgcttgtccagtgtgtctccccctacagagACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCACTCTGTCTTCATCAGGATGGACACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCGCTCCAGGAGGCAGAGgtagctcctgtcctggacccggagagtaggaagggatggggagacatggt Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGG-ACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG ttatgctccatgatatagcaaatgcttgtccagtgtgtctccccctacagagACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCACTCTGTCTTCATCAGGATGGACACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCGCTCCAGGAGGCAGAGgtagctcctgtcctggacccggagagtaggaagggatggggagacatggt Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGG-ACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG ttatgctccatgatatagcaaatgcttgtccagtgtgtctccccctacagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCACTCTGTCTTCATCAGGATGGAcACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCGCTCCAGGAGGCAGAGgtagctcctgtcctggacccggagagtaggaagggatggggagacatggt Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGG-ACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG ttatgctccatgatatagcaaatgcttgtccagtgtgtctccccctacagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCACTCTGTCTTCATCAGGATGGACACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCGCTCCAGGAGGCAGAGgtagctcctgtcctggacccggagagtaggaagggatggggagacatggt Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGG-ACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG ttatgctccatgatatagcaaatgcttgtccagtgtgtctccccctacagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCACTCTGTCTTCATCAGGATGGACACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCGCTCCAGGAGGCAGAGgtagctcctgtcctggacccggagagtaggaagggatggggagacatggt Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGG-ACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG ttatgctccatgatatagcaaatgcttgtccagtgtgtctccccctacagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCACTCTGTCTTCATCAGGATGGACACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCGCTCCAGGAGGCAGAGgtagctcctgtcctggacccggagagtaggaagggatggggagacatggt Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGG-ACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG ttatgctccatgatatagcaaatgcttgtccagtgtgtctccccctacagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCACTCTGTCTTCATCAGGATGGACACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCGCTCCAGGAGGCAGAGgtagctcctgtcctggacccggagagtaggaagggatggggagacatggt Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGG-ACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG ttatgctccatgatatagcaaatgcttgtccagtgtgtctccccctacagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCACTCTGTCTTCATCAGGATGGACACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCGCTCCAGGAGGCAGAGgtagctcctgtcctggacccggagagtaggaagggatggggagacatggt #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCC-GATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccaggTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTCGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAggtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCC-GATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccaggTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTCGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAggtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCC-GATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTcGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATC-CGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTCGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATC-CGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTCGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCC-GATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTCGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCC-GATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTCGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTA-TCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTCGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc #### Eml3_ID2522_21 --> 2 - 0 Original Alignment gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggagccaaaggatgaatgaaaagtgcgggtgccgtatttggtttcaggtGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCACACAATGAACGGGTGGTAGCTGTTGCAGATGATTGCTGTAAACGTACATGTCTTTCAGTACCCCTGTGCCCGGGCCAAAgtcagtctctatcagcctattgggcccaggaacaaacagttgtggttact Alignment from CESAR gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggagccaaaggatgaatgaaaagtgcgggtgccgtatttggtttcaggtGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCACACAATGAACGGGTGGTAGCTGTTGCAGATGATTGCTGTAAACGTACATGTCTTTCAGTACCCCTGTGCCCGGGCCAAAgtcagtctctatcagcctattgggcccaggaacaaacagttgtggttact Alignment from Spaln_aa2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggagccaaaggatgaatgaaaagtgcgggtgccgtatttggtttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCACACAATGAACGGGTGGTAGCTGTTGCAGATGATTGCTGTAAAcGTACATGTCTTTCAGTACCCCTGTGCCCGGGCCAAAgtcagtctctatcagcctattgggcccaggaacaaacagttgtggttact Alignment from Spaln_nt2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggagccaaaggatgaatgaaaagtgcgggtgccgtatttggtttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCACACAATGAACGGGTGGTAGCTGTTGCAGATGATTGCTGTAAACGTACATGTCTTTCAGTACCCCTGTGCCCGGGCCAAAgtcagtctctatcagcctattgggcccaggaacaaacagttgtggttact Alignment from Pairagon GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggagccaaaggatgaatgaaaagtgcgggtgccgtatttggtttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCACACAATGAACGGGTGGTAGCTGTTGCAGATGATTGCTGTAAACGTACATGTCTTTCAGTACCCCTGTGCCCGGGCCAAAgtcagtctctatcagcctattgggcccaggaacaaacagttgtggttact Alignment from Exonerate_protein2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggagccaaaggatgaatgaaaagtgcgggtgccgtatttggtttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCACACAATGAACGGGTGGTAGCTGTTGCAGATGATTGCTGTAAACGTACATGTCTTTCAGTACCCCTGTGCCCGGGCCAAAgtcagtctctatcagcctattgggcccaggaacaaacagttgtggttact Alignment from Exonerate_coding2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggagccaaaggatgaatgaaaagtgcgggtgccgtatttggtttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCACACAATGAACGGGTGGTAGCTGTTGCAGATGATTGCTGTAAACGTACATGTCTTTCAGTACCCCTGTGCCCGGGCCAAAgtcagtctctatcagcctattgggcccaggaacaaacagttgtggttact Alignment from GeneWise GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gtgggagccaaaggatgaatgaaaagtgcgggtgccgtatttggtttcagGTGTATGGCCTGGTGGCTGCGATGGTACGGGCATCAATTCCCTATGCCCTTCACACAATGAACGGGTGGTAGCTGTTGCAGATGATTGCTGTAAACGTACATGTCTTTCAGTACCCCTGTGCCCGGGCCAAAgtcagtctctatcagcctattgggcccaggaacaaacagttgtggttact #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAA-GGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcaggtGAACATCTGTGCAACTTAGAAGAACGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAA-GGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcaggtGAACATCTGTGCAACTTAGAAGAACGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAA-GGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcagGTGAACATCTGTGCAACTTAGAAGAAcGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAA-GGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcagGTGAACATCTGTGCAACTTAGAAGAACGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAA-GGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcagGTGAACATCTGTGCAACTTAGAAGAACGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAA-GGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcagGTGAACATCTGTGCAACTTAGAAGAACGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from Exonerate_coding2genome GGCGAACGTCTGTGTAACTTGGAGGAA-GGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcaGGTGAACATCTGTGCAACTTAGAAGAACGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt Alignment from GeneWise GAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG cacttttgcatgtgttgcaggcaacttgataagccatggttctttctcaggtgaacatctgtgcaacttagAAGAACGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTCTTCATCATTGGCTGGCTGTCCTATGAAGACCAGCGAGAATGGTGCAgtaagcaaggaggctccctagactgtgttcactcctccctgtgagctatt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC---TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTTGGCTACAGCATcGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ttccgactccagcattggtatctagggggatgattctgtttgcttttcagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGTTTGTCACTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGACACCTAAAGgtgagtactcaaggtatggttgtcaatattttgtcaagtttttgcaaact #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT-GGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACACCTGAATTTCCAGATTGAACACcagtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT-GGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACACCTGAATTTCCAGATTGAACACcagtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT-GGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTcGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT-GGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT-GGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT-GGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGT-GGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTC-AGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaattttcactgtcctcgtttccttcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTCGGACACCTGAATTTCCAGATTGAACACCAgtactttcatatctccaggaaacatgggtggcacagggagaagggtaggc #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTAC-ATGCTGGTGTGCATGCAGTGGACG tatcatttgtataacccatggccgagggttctattcctctttgtccacagttGGCCCTCCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCGTACCATGCTTGTATGCATGCAGTGGACTgtaggtagcttggcttcaaaacctaaggtatgattgggatattctgttga Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTAC-ATGCTGGTGTGCATGCAGTGGACG tatcatttgtataacccatggccgagggttctattcctctttgtccacagttGGCCCTCCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCGTACCATGCTTGTATGCATGCAGTGGACTgtaggtagcttggcttcaaaacctaaggtatgattgggatattctgttga Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTAC-ATGCTGGTGTGCATGCAGTGGACG tatcatttgtataacccatggccgagggttctattcctctttgtccacagTTGGCCCTCCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCGTACcATGCTTGTATGCATGCAGTGGACTgtaggtagcttggcttcaaaacctaaggtatgattgggatattctgttga Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTA-CATGCTGGTGTGCATGCAGTGGACG tatcatttgtataacccatggccgagggttctattcctctttgtccacagTTGGCCCTCCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCGTACCATGCTTGTATGCATGCAGTGGACTgtaggtagcttggcttcaaaacctaaggtatgattgggatattctgttga Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTA-CATGCTGGTGTGCATGCAGTGGACG tatcatttgtataacccatggccgagggttctattcctctttgtccacagTTGGCCCTCCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCGTACCATGCTTGTATGCATGCAGTGGACTgtaggtagcttggcttcaaaacctaaggtatgattgggatattctgttga Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTAC-ATGCTGGTGTGCATGCAGTGGACG tatcatttgtataacccatggccgagggttctattcctctttgtccacagTTGGCCCTCCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCGTACCATGCTTGTATGCATGCAGTGGACTgtaggtagcttggcttcaaaacctaaggtatgattgggatattctgttga Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTAC-ATGCTGGTGTGCATGCAGTGGACG tatcatttgtataacccatggccgagggttctattcctctttgtccacagTTGGCCCTCCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCGTACCATGCTTGTATGCATGCAGTGGACTgtaggtagcttggcttcaaaacctaaggtatgattgggatattctgttga Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTAC-ATGCTGGTGTGCATGCAGTGGACG tatcatttgtataacccatggccgagggttctattcctctttgtccacagTTGGCCCTCCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCGTACCATGCTTGTATGCATGCAGTGGACTgtaggtagcttggcttcaaaacctaaggtatgattgggatattctgttga #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGaggtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGaggtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCcTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTC-CTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGT-CCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG tttctgggcccctaggtccccagacaacgtgtctcccctcttgcctctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGTTGTGAGgtaggatgcaacatgctggccacccaaatccatttaggtcctgtggactt #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACC-GTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGCGTGGAGGCAGTAAACTGGgggtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACC-GTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGCGTGGAGGCAGTAAACTGGgggtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACC-GTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGcGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAAC-CGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGCGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAAC-CGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGCGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACC-GTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGCGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACC-GTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGCGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACC-GTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaatctccagatttctcccctaccctgcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCAATGCTCTTAGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCTTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGCGTGGAGGCAGTAAACTGGGGgtaggcatccatttggtagaccgcttggacagtgaaatggtggaagcagt #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAG-CTCATCAAGGAGGCACAAAAG tttcctttgtccagatctagtgtccttttcagtctctgctttttttttaggTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCAGGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCCTCATCAAGGAGGCACAAAAGgtacttagcttgatgttatcttcatagtgcttatggacatcaagctgtct Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAG-CTCATCAAGGAGGCACAAAAG tttcctttgtccagatctagtgtccttttcagtctctgctttttttttaggTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCAGGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCCTCATCAAGGAGGCACAAAAGgtacttagcttgatgttatcttcatagtgcttatggacatcaagctgtct Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAG-CTCATCAAGGAGGCACAAAAG tttcctttgtccagatctagtgtccttttcagtctctgctttttttttagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCAGGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGcCTCATCAAGGAGGCACAAAAGgtacttagcttgatgttatcttcatagtgcttatggacatcaagctgtct Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAG-CTCATCAAGGAGGCACAAAAG tttcctttgtccagatctagtgtccttttcagtctctgctttttttttagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCAGGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCCTCATCAAGGAGGCACAAAAGgtacttagcttgatgttatcttcatagtgcttatggacatcaagctgtct Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAG-CTCATCAAGGAGGCACAAAAG tttcctttgtccagatctagtgtccttttcagtctctgctttttttttagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCAGGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCCTCATCAAGGAGGCACAAAAGgtacttagcttgatgttatcttcatagtgcttatggacatcaagctgtct Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAG-CTCATCAAGGAGGCACAAAAG tttcctttgtccagatctagtgtccttttcagtctctgctttttttttagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCAGGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCCTCATCAAGGAGGCACAAAAGgtacttagcttgatgttatcttcatagtgcttatggacatcaagctgtct Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAG-CTCATCAAGGAGGCACAAAAG tttcctttgtccagatctagtgtccttttcagtctctgctttttttttagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCAGGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCCTCATCAAGGAGGCACAAAAGgtacttagcttgatgttatcttcatagtgcttatggacatcaagctgtct Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAG-CTCATCAAGGAGGCACAAAAG tttcctttgtccagatctagtgtccttttcagtctctgctttttttttagGTTGGACTCTTACAGCCACAAAGAAGATACATCAGCGTTCCCAGGGAAGCGGGCCTTGATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCCTCATCAAGGAGGCACAAAAGgtacttagcttgatgttatcttcatagtgcttatggacatcaagctgtct #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTACGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAacgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTACGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAacgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTAcGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTACGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGT-TGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTACGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTACGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTACGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from GeneWise -------------GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gttatagtatggatgtcatatgtcttcttactctctctatgttcttccagACGGCTGCTGTACGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACGGAACCCCAGCTGATGCAAACgtgagtgtctactgactttgtaggaaacaaactctgctgtatcttttcct #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAAC-CGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagagagataaagagcataggtgaccaactgttttcctcaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATCGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGC-TTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagagagataaagagcataggtgaccaactgttttcctcaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATCGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGC-TTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATCGAcTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCG-CTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATCGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCG-CTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATCGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGC-TTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATCGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGC-TTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATCGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAAC-CGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATCGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGAC-CTCCTGGACCTGCATAAGag acatgaatatccaagatggtttatgcataaatttatgtttttctcaccagacCCTCAGGTGGATGACATGGATGTTGACCTAGATAAAGAATTCCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCCTCCTAGACCTGGACAAGaggtaagcgcgggatctttgggagctgaacttactatactcagtctacagaa Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGAC-CTCCTGGACCTGCATAAGag acatgaatatccaagatggtttatgcataaatttatgtttttctcaccagacCCTCAGGTGGATGACATGGATGTTGACCTAGATAAAGAATTCCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCCTCCTAGACCTGGACAAGaggtaagcgcgggatctttgggagctgaacttactatactcagtctacagaa Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGAC-CTCCTGGACCTGCATAAGAG acatgaatatccaagatggtttatgcataaatttatgtttttctcaccagACCCTCAGGTGGATGACATGGATGTTGACCTAGATAAAGAATTCCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACcCTCCTAGACCTGGACAAGAGgtaagcgcgggatctttgggagctgaacttactatactcagtctacagaa Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACC-TCCTGGACCTGCATAAGAG acatgaatatccaagatggtttatgcataaatttatgtttttctcaccagACCCTCAGGTGGATGACATGGATGTTGACCTAGATAAAGAATTCCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCCTCCTAGACCTGGACAAGAGgtaagcgcgggatctttgggagctgaacttactatactcagtctacagaa Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGA-CCTCCTGGACCTGCATAAGAG acatgaatatccaagatggtttatgcataaatttatgtttttctcaccagACCCTCAGGTGGATGACATGGATGTTGACCTAGATAAAGAATTCCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCCTCCTAGACCTGGACAAGAGgtaagcgcgggatctttgggagctgaacttactatactcagtctacagaa Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGAC-CTCCTGGACCTGCATAAGAG acatgaatatccaagatggtttatgcataaatttatgtttttctcaccagACCCTCAGGTGGATGACATGGATGTTGACCTAGATAAAGAATTCCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCCTCCTAGACCTGGACAAGAGgtaagcgcgggatctttgggagctgaacttactatactcagtctacagaa Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGAC-CTCCTGGACCTGCATAAGAG acatgaatatccaagatggtttatgcataaatttatgtttttctcaccagACCCTCAGGTGGATGACATGGATGTTGACCTAGATAAAGAATTCCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCCTCCTAGACCTGGACAAGAGgtaagcgcgggatctttgggagctgaacttactatactcagtctacagaa Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGAC-CTCCTGGACCTGCATAAGAG acatgaatatccaagatggtttatgcataaatttatgtttttctcaccagACCCTCAGGTGGATGACATGGATGTTGACCTAGATAAAGAATTCCTCCAAGACTTCAAGGAGCTTAAGGTTCTTGTGGCTGACAAGGACCCTCCTAGACCTGGACAAGAGgtaagcgcgggatctttgggagctgaacttactatactcagtctacagaa #### Fkbp2_ID1946_3 --> 1 - 1 Original Alignment gATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg gttgacttttggctagctgtttttatgcatgcccatatctttctttacaggATGTGTGAAGGACGAGAGGCGGAAGTTGGTCATCCTGTCAGAATTGggtaagagaacatggtggccagaaccaatccagaattagactagtttcatg Alignment from CESAR gATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg gttgacttttggctagctgtttttatgcatgcccatatctttctttacaggATGTGTGAAGGACGAGAGGCGGAAGTTGGTCATCCTGTCAGAATTGggtaagagaacatggtggccagaaccaatccagaattagactagtttcatg Alignment from Spaln_aa2Genome GATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgacttttggctagctgtttttatgcatgcccatatctttctttacagGATGTGTGAAGGAcGAGAGGCGGAAGTTGGTCATCCTGTCAGAATTGGgtaagagaacatggtggccagaaccaatccagaattagactagtttcatg Alignment from Spaln_nt2Genome GATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgacttttggctagctgtttttatgcatgcccatatctttctttacagGATGTGTGAAGGACGAGAGGCGGAAGTTGGTCATCCTGTCAGAATTGGgtaagagaacatggtggccagaaccaatccagaattagactagtttcatg Alignment from Pairagon GATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgacttttggctagctgtttttatgcatgcccatatctttctttacagGATGTGTGAAGGACGAGAGGCGGAAGTTGGTCATCCTGTCAGAATTGGgtaagagaacatggtggccagaaccaatccagaattagactagtttcatg Alignment from Exonerate_protein2genome GATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG gttgacttttggctagctgtttttatgcatgcccatatctttctttacagGATGTGTGAAGGACGAGAGGCGGAAGTTGGTCATCCTGTCAGAATTGGgtaagagaacatggtggccagaaccaatccagaattagactagtttcatg Alignment from Exonerate_coding2genome gttgacttttggctagctgtttttatgcatgcccatatctttctttacaggatgtgtgaaggacgagaggcggaagttggtcatcctgtcagaattgggtaagagaacatggtggccagaaccaatccagaattagactagtttcatg Alignment from GeneWise gttgacttttggctagctgtttttatgcatgcccatatctttctttacaggatgtgtgaaggacgagaggcggaagttggtcatcctgtcagaattgggtaagagaacatggtggccagaaccaatccagaattagactagtttcatg #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCT-ACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCACACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCT-ACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCACACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCT-ACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAcACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCT-ACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCACACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGC-TACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCACACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCT-ACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCACACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCT-ACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCACACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTG-GCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCACACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat #### Ganab_ID2467_6 --> 1 - 2 Original Alignment tTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGG-GATAAGATCAAGAACCTTTTCTCTag ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagtTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGCGATAAGATCAAGAACCTTTTTTCCaggtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from CESAR tTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGG-GATAAGATCAAGAACCTTTTCTCTag ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagtTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGCGATAAGATCAAGAACCTTTTTTCCaggtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Spaln_aa2Genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGG-GATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGcGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Spaln_nt2Genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGG-GATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGCGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Pairagon TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGG-GATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGCGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Exonerate_protein2genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGG-GATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGCGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Exonerate_coding2genome ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagtttctcagataaagttagcctgacactcggcagtgtgtggcgataagatcaagaaccttttttccaggtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from GeneWise TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGG-GATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGCGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCT-GAGCATGCTGACAGCCTGAGACTGAAGGTCACTga gtaagtaattggcaagtcttaatagtaaaagccttaacctgttttgaaaggtCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTCGAACATGCTGACAGCTTGAGACTGAAGGTTACTgagtaagtccatgatgaggtgtgataacagtggtaatgaaagacctaacttt Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCT-GAGCATGCTGACAGCCTGAGACTGAAGGTCACTga gtgagcaattggcaagtcttaatagtaaaagccttaacctgttttgaaaggtCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTCGAACATGCTGACAGCTTGAGACTGAAGGTTACTgagtaagtccatgatgaggtgtgataacagtggtaatgaaagacctaacttt Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCT-GAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaagtaattggcaagtcttaatagtaaaagccttaacctgttttgaaagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTcGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaagtccatgatgaggtgtgataacagtggtaatgaaagacctaacttt Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCT-GAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaagtaattggcaagtcttaatagtaaaagccttaacctgttttgaaagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTCGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaagtccatgatgaggtgtgataacagtggtaatgaaagacctaacttt Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCT-GAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaagtaattggcaagtcttaatagtaaaagccttaacctgttttgaaagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTCGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaagtccatgatgaggtgtgataacagtggtaatgaaagacctaacttt Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCT-GAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaagtaattggcaagtcttaatagtaaaagccttaacctgttttgaaagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTCGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaagtccatgatgaggtgtgataacagtggtaatgaaagacctaacttt Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCT-GAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaagtaattggcaagtcttaatagtaaaagccttaacctgttttgaaagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTCGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaagtccatgatgaggtgtgataacagtggtaatgaaagacctaacttt Alignment from GeneWise GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCT-GAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtaagtaattggcaagtcttaatagtaaaagccttaacctgttttgaaagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTCGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaagtccatgatgaggtgtgataacagtggtaatgaaagacctaacttt #### Ganab_ID2471_10 --> 1 - 0 Original Alignment gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTC-CTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG---CCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from CESAR gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG--CCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Spaln_aa2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTGC--CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Spaln_nt2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCT ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG--CCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Pairagon GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTG--CCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACAC------AAAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Exonerate_protein2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTG-CTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTGC---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from Exonerate_coding2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTG-CTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTGC---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg Alignment from GeneWise GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG ccctggagacacttgagtgttcactgtagtgtgtcttcttgctcttgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAACAACCCAACGGCTCTTTATGGGTCTGTACCCGTGC--CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAACGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaagtcatgggtatgtgagacttggggtcaggctttgccatccctgatg #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATT-GAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagggTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTCGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATT-GAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagggTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTCGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATT-GAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTcGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATT-GAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTCGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATT-GAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTCGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATT-GAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTCGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATT-GAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTCGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGAC-ATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG ataaagtatttacacttttaccagcctggttttctttcttatttgaacagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTAGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGCTGGATGTTCGAACACGCCGATGGCAAGAGGTACTTCACCTGGGACCCCACCCAATTCCCCCAGCCACTCAATATGCTTGATCACTTGACTTCAAAAAGACGGAAGgtaggaggtgttacagctgtccacatgtcttttgtccagtgttggggaag #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATT-GTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc ggaaggccattgtaatctaaacaatttttgtctctgggttctgtctacagCTAGTTGCTACTCGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAggtaagatctgtgatcaatgaaattttactcctgccatcctgtccacaggc Alignment from CESAR CTGGTGGCC-ATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc ggaaggccattgtaatctaaacaatttttgtctctgggttctgtctacagCTAGTTGCTACTCGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAggtaagatctgtgatcaatgaaatttttatatgttctcttgtcttctaggc Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaaggccattgtaatctaaacaatttttgtctctgggttctgtctacagctagTTGCTA---CTCGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagatctgtgatcaatgaaattttactcctgccatcctgtccacagGC Alignment from Spaln_nt2Genome CTGGTGGCCATT-GTGGACCCCCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaaggccattgtaatctaaacaatttttgtctctgggttctgtctacagCTAGTTGCTACTCGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGATGAGTTGCAAA---------------TCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagatctgtgatcaatgaaattttactcctgccatcctgtccacagGC Alignment from Pairagon CTGGTGGCCA-TTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaaggccattgtaatctaaacaatttttgtctctgggttctgtctacagCTAGTTGCTACTCGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGATGAGTTGCAAA---------------TCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagatctgtgatcaatgaaattttactcctgccatcctgtccacagGC Alignment from Exonerate_protein2genome CTGGTGGCC-ATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaaggccattgtaatctaaacaatttttgtctctgggttctgtctacagCTAGTTGCTACTCGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagatctgtgatcaatgaaattttactcctgccatcctgtccacagGC Alignment from Exonerate_coding2genome CTGGTGGCC-ATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaaggccattgtaatctaaacaatttttgtctctgggttctgtctacagCTAGTTGCTACTCGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagatctgtgatcaatgaaattttactcctgccatcctgtccacagGC Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaaggccattgtaatctaaacaatttttgtctctgggttctgtctacagctagTTGCTA---CTCGTGGACCCACATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagatctgtgatcaatgaaattttactcctgccatcctgtccacagGC #### Ganab_ID2475_14 --> 2 - 0 Original Alignment Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AggtatgttctgtgatcaatgaaatttttatatgttctcttgtcttctaggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGCTCTAACATGTTCAGCTTTGACAATTATGAGgtaagcaattggtagttaattggtagtggtaatcaacataattttgctga Alignment from CESAR Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AggtaagatctgtgatcaatgaaatttttatatgttctcttgtcttctaggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGCTCTAACATGTTCAGCTTTGACAATTATGAGgtaagcaattggtagttaattggtagtggtaatcaacataattttgctga Alignment from Spaln_aa2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AGgtatgttctgtgatcaatgaaatttttatatgttctcttgtcttctagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGcTCTAACATGTTCAGCTTTGACAATTATGAGgtaagcaattggtagttaattggtagtggtaatcaacataattttgctga Alignment from Spaln_nt2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AGgtatgttctgtgatcaatgaaatttttatatgttctcttgtcttctagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGCTCTAACATGTTCAGCTTTGACAATTATGAGgtaagcaattggtagttaattggtagtggtaatcaacataattttgctga Alignment from Pairagon AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AGgtatgttctgtgatcaatgaaatttttatatgttctcttgtcttctagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGCTCTAACATGTTCAGCTTTGACAATTATGAGgtaagcaattggtagttaattggtagtggtaatcaacataattttgctga Alignment from Exonerate_protein2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AGgtatgttctgtgatcaatgaaatttttatatgttctcttgtcttctagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGCTCTAACATGTTCAGCTTTGACAATTATGAGgtaagcaattggtagttaattggtagtggtaatcaacataattttgctga Alignment from Exonerate_coding2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AGgtatgttctgtgatcaatgaaatttttatatgttctcttgtcttctagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGCTCTAACATGTTCAGCTTTGACAATTATGAGgtaagcaattggtagttaattggtagtggtaatcaacataattttgctga Alignment from GeneWise AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG AGgtatgttctgtgatcaatgaaatttttatatgttctcttgtcttctagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGCTCTAACATGTTCAGCTTTGACAATTATGAGgtaagcaattggtagttaattggtagtggtaatcaacataattttgctga #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTC-AATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgtaatctcctttttctccccttttccaaaagcctttctaatcttttcagGGTTCAGCCCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCCAATGGTCCTGAGGTCACTATGTTAAAGGATGCAGTGCACTATGGGGGCTGGGAGCACCGGGATATCCATAATTTTTATGGATTATATGTGgtaatgcaggtaaatgagaaggcagtcaggcaaagaggacaaaacagttg Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTC-AATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgtaatctcctttttctccccttttccaaaagcctttctaatcttttcagGGTTCAGCCCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCCAATGGTCCTGAGGTCACTATGTTAAAGGATGCAGTGCACTATGGGGGCTGGGAGCACCGGGATATCCATAATTTTTATGGATTATATGTGgtaatgcaggtaaatgagaaggcagtcaggcaaagaggacaaaacagttg Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTC-AATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgtaatctcctttttctccccttttccaaaagcctttctaatcttttcagGGTTCAGCCCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCcAATGGTCCTGAGGTCACTATGTTAAAGGATGCAGTGCACTATGGGGGCTGGGAGCACCGGGATATCCATAATTTTTATGGATTATATGTGgtaatgcaggtaaatgagaaggcagtcaggcaaagaggacaaaacagttg Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTC-AATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgtaatctcctttttctccccttttccaaaagcctttctaatcttttcagGGTTCAGCCCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCCAATGGTCCTGAGGTCACTATGTTAAAGGATGCAGTGCACTATGGGGGCTGGGAGCACCGGGATATCCATAATTTTTATGGATTATATGTGgtaatgcaggtaaatgagaaggcagtcaggcaaagaggacaaaacagttg Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTT-CAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgtaatctcctttttctccccttttccaaaagcctttctaatcttttcagGGTTCAGCCCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCCAATGGTCCTGAGGTCACTATGTTAAAGGATGCAGTGCACTATGGGGGCTGGGAGCACCGGGATATCCATAATTTTTATGGATTATATGTGgtaatgcaggtaaatgagaaggcagtcaggcaaagaggacaaaacagttg Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTC-AATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgtaatctcctttttctccccttttccaaaagcctttctaatcttttcagGGTTCAGCCCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCCAATGGTCCTGAGGTCACTATGTTAAAGGATGCAGTGCACTATGGGGGCTGGGAGCACCGGGATATCCATAATTTTTATGGATTATATGTGgtaatgcaggtaaatgagaaggcagtcaggcaaagaggacaaaacagttg Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTC-AATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgtaatctcctttttctccccttttccaaaagcctttctaatcttttcagGGTTCAGCCCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCCAATGGTCCTGAGGTCACTATGTTAAAGGATGCAGTGCACTATGGGGGCTGGGAGCACCGGGATATCCATAATTTTTATGGATTATATGTGgtaatgcaggtaaatgagaaggcagtcaggcaaagaggacaaaacagttg Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTC-AATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgtaatctcctttttctccccttttccaaaagcctttctaatcttttcagGGTTCAGCCCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCCAATGGTCCTGAGGTCACTATGTTAAAGGATGCAGTGCACTATGGGGGCTGGGAGCACCGGGATATCCATAATTTTTATGGATTATATGTGgtaatgcaggtaaatgagaaggcagtcaggcaaagaggacaaaacagttg #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCT-TTCTTCTCAGGCTCCCAGCGCTTTg accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTCTTCTCTTCAGGTTTCCAGCGCTTTggtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCT-TTCTTCTCAGGCTCCCAGCGCTTTg accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTCTTCTCTTCAGGTTTCCAGCGCTTTggtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCT-TTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTcTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCT-TTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTCTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCT-TTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTCTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCT-TTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTCTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCT-TTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTCTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGG-GCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggtagtatgtgttcttttcatgtttgcctctttactcagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCGTAGAGCGTTCGTTTGTGTTGAGTAGGTCTCTTCTCTTCAGGTTTCCAGCGCTTTGgtatattgttgaaactagggtcaaaactctagtcacctatggttaatctg #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtcaggctgcataaatgtgtgcaaaaacgcctcactgtactcctgcaggtGACACACTCCTTATTCACCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtgagttgccaaatagcacagcccaagggacccaaaatggcaaaaacata Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtcaggctgcataaatgtgtgcaaaaacgcctcactgtactcctgcaggtGACACACTCCTTATTCACCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtgagttgccaaatagcacagcccaagggacccaaaatggcaaaaacata Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtcaggctgcataaatgtgtgcaaaaacgcctcactgtactcctgcagGTGACACACTCCTTATTCACCCTGTATCAGATGCTGGGGCCCATGGAcGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtgagttgccaaatagcacagcccaagggacccaaaatggcaaaaacata Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtcaggctgcataaatgtgtgcaaaaacgcctcactgtactcctgcagGTGACACACTCCTTATTCACCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtgagttgccaaatagcacagcccaagggacccaaaatggcaaaaacata Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtcaggctgcataaatgtgtgcaaaaacgcctcactgtactcctgcagGTGACACACTCCTTATTCACCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtgagttgccaaatagcacagcccaagggacccaaaatggcaaaaacata Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtcaggctgcataaatgtgtgcaaaaacgcctcactgtactcctgcagGTGACACACTCCTTATTCACCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtgagttgccaaatagcacagcccaagggacccaaaatggcaaaaacata Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtcaggctgcataaatgtgtgcaaaaacgcctcactgtactcctgcagGTGACACACTCCTTATTCACCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtgagttgccaaatagcacagcccaagggacccaaaatggcaaaaacata Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtcaggctgcataaatgtgtgcaaaaacgcctcactgtactcctgcagGTGACACACTCCTTATTCACCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtgagttgccaaatagcacagcccaagggacccaaaatggcaaaaacata #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCA-GTAACTTTGAGCAGT ggcaaaaacataggtgccttaggagtggccataccttgtcttctttttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCACGTAACCTTGAGCAGCgtaggtatgactatctcaccagtatctgtgttcatttgtcaggattgaaa Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCA-GTAACTTTGAGCAGT ggcaaaaacataggtgccttaggagtggccataccttgtcttctttttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCACGTAACCTTGAGCAGCgtaggtatgactatctcaccagtatctgtgttcatttgtcaggattgaaa Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCA-GTAACTTTGAGCAGT ggcaaaaacataggtgccttaggagtggccataccttgtcttctttttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAcGTAACCTTGAGCAGCgtaggtatgactatctcaccagtatctgtgttcatttgtcaggattgaaa Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCA-GTAACTTTGAGCAGT ggcaaaaacataggtgccttaggagtggccataccttgtcttctttttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCACGTAACCTTGAGCAGCgtaggtatgactatctcaccagtatctgtgttcatttgtcaggattgaaa Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCA-GTAACTTTGAGCAGT ggcaaaaacataggtgccttaggagtggccataccttgtcttctttttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCACGTAACCTTGAGCAGCgtaggtatgactatctcaccagtatctgtgttcatttgtcaggattgaaa Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCA-GTAACTTTGAGCAGT ggcaaaaacataggtgccttaggagtggccataccttgtcttctttttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCACGTAACCTTGAGCAGCgtaggtatgactatctcaccagtatctgtgttcatttgtcaggattgaaa Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCA-GTAACTTTGAGCAGT ggcaaaaacataggtgccttaggagtggccataccttgtcttctttttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCACGTAACCTTGAGCAGCgtaggtatgactatctcaccagtatctgtgttcatttgtcaggattgaaa Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCA-GTAACTTTGAGCAGT ggcaaaaacataggtgccttaggagtggccataccttgtcttctttttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCACGTAACCTTGAGCAGCgtaggtatgactatctcaccagtatctgtgttcatttgtcaggattgaaa #### Gbf1_ID9784_6 --> 2 - 2 Original Alignment agTTATTGAGAAAATCCGCAGAGCAC-ACTCTGGTAGACATGGTGCAGCTGCTCTTCACAag aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagagTTATTGAGAAAATCTGCGGAGCACCACTCTGGTGGACATGGTGCAGCTGCTCTTCACAaggtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from CESAR agTTATTGAGAAAATCCGCAGAGCAC-ACTCTGGTAGACATGGTGCAGCTGCTCTTCACAag aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagagTTATTGAGAAAATCTGCGGAGCACCACTCTGGTGGACATGGTGCAGCTGCTCTTCACAaggtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Spaln_aa2Genome AGTTATTGAGAAAATCCGCAGAGCAC-ACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCACcACTCTGGTGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Spaln_nt2Genome AGTTATTGAGAAAATCCGCAGAGCAC-ACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCACCACTCTGGTGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Pairagon AGTTATTGAGAAAATCCGCAGAGCA-CACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCACCACTCTGGTGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Exonerate_protein2genome AGTTATTGAGAAAATCCGCAGAGCAC-ACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCACCACTCTGGTGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from Exonerate_coding2genome AGTTATTGAGAAAATCCGCAGAGCAC-ACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagAGTTATTGAGAAAATCTGCGGAGCACCACTCTGGTGGACATGGTGCAGCTGCTCTTCACAAGgtaggcctactacaactcagcattaacctgccagcttccacacagctgcc Alignment from GeneWise aatagtacactaagtattgtcacctgttctcagttgtgtttttctttcagagttattgagaaaatctgcggagcaccactctggtggacatggtgcagctgctcttcacaaggtaggcctactacaactcagcattaacctgccagcttccacacagctgcc #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCA-GGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACAGACTATGGAAAGCCACGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCA-GGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACAGACTATGGAAAGCCACGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCA-GGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACAGACTATGGAAAGCCAcGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCA-GGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACAGACTATGGAAAGCCACGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCA-GGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACAGACTATGGAAAGCCACGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCA-GGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACAGACTATGGAAAGCCACGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCA-GGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACAGACTATGGAAAGCCACGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCA-GGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccacaaggtttacgagaatgttttgtctctttctcccgtcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATTCTCGGGGTCTTTACTTTCCCAGTGGAGGGTGGTTG---ACAGACTATGGAAAGCCACGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtgagaatccagtatattcttcctggctgaacccccagtcaatgttttac #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcattatgaggtgttacattaatgttttctcttttaacagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCTTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTTCGAAAGCAGAATGCATCCATGACTCTAGAAgtaagtacagaatagctgtctaacttcagaagtcaggtgacttgtggcaa Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcattatgaggtgttacattaatgttttctcttttaacagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCTTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTTCGAAAGCAGAATGCATCCATGACTCTAGAAgtaagtacagaatagctgtctaacttcagaagtcaggtgacttgtggcaa Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcattatgaggtgttacattaatgttttctcttttaacagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCTTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATcAACCACAATGTTCGAAAGCAGAATGCATCCATGACTCTAGAAgtaagtacagaatagctgtctaacttcagaagtcaggtgacttgtggcaa Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcattatgaggtgttacattaatgttttctcttttaacagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCTTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTTCGAAAGCAGAATGCATCCATGACTCTAGAAgtaagtacagaatagctgtctaacttcagaagtcaggtgacttgtggcaa Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcattatgaggtgttacattaatgttttctcttttaacagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCTTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTTCGAAAGCAGAATGCATCCATGACTCTAGAAgtaagtacagaatagctgtctaacttcagaagtcaggtgacttgtggcaa Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcattatgaggtgttacattaatgttttctcttttaacagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCTTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTTCGAAAGCAGAATGCATCCATGACTCTAGAAgtaagtacagaatagctgtctaacttcagaagtcaggtgacttgtggcaa Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcattatgaggtgttacattaatgttttctcttttaacagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCTTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTTCGAAAGCAGAATGCATCCATGACTCTAGAAgtaagtacagaatagctgtctaacttcagaagtcaggtgacttgtggcaa Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACAT-AACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcattatgaggtgttacattaatgttttctcttttaacagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCTTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATCAACCACAATGTTCGAAAGCAGAATGCATCCATGACTCTAGAAgtaagtacagaatagctgtctaacttcagaagtcaggtgacttgtggcaa #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcaggAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcaggAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAAcTTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGC-AAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAACTTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCC-TTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagaGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCC-TTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagaGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCC-TTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCcTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCC-TTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGG-CCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCC-TTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCC-TTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTG-GCCTTGGACTGTATCAAG ctagagaagcagatatgatcagttctatactgaatattgcttctttgcagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCCAAAAGGGTGGCCCTTAGATTGTATTAAGgtgagttgttgacccaatgttacaaggataatcatgcagggataatatag #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTC-CAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCCAGCTGGAATCACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTC-CAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCCAGCTGGAATCACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTC-CAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCcCAGCTGGAATCACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTC-CAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCCAGCTGGAATCACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCT-CCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCCAGCTGGAATCACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTC-CAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCCAGCTGGAATCACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTC-CAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCCAGCTGGAATCACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTC-CTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttctttgcttatcatactctgctcatctggttcctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCCAGCTGGAATCACTGCAGGAACTCATGAAGgtgggttgtgaacagatcgtggaaagatagaatcttactggtgcagtgca #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGAC-ACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATCACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACACTTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAggtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGAC-ACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATCACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACACTTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAggtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGAC-ACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATcACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACACTTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGA-CACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATCACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACACTTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGA-CACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATCACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACACTTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGAC-ACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATCACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACACTTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGAC-ACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATCACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACACTTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGAC-ACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agtctccattcaaaacactacttctcctcattgaaattctttccacccagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATCACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGTCCTACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTATGCTTCTTGCCACACTTGCGTGATGAACTCTTCAAGCAGACTGTCATCCAAGgtgagggcagatttgataaccaagcactttactcacagaactacccagag #### Gif_ID3279_3 --> 2 - 1 Original Alignment acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAG-AACTGGTCACCTTCAa ctccctctttttcttgtgttgtgtgtcttgtgtccctggtctcttcacagacTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTACTCTG---AGGAAAATGGAACAACTGGTCACCTTCAagtgagtgtggtctatggggatattaggaggaatagagtgtcatctatgcg Alignment from CESAR acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAG-AACTGGTCACCTTCAa ctccctctttttcttgtgttgtgtgtcttgtgtccctggtctcttcacagacTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAACAACTGGTCACCTTCAagtgagtgtggtctatggggatattaggaggaatagagtgtcatctatgcg Alignment from Spaln_aa2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAG-AACTGGTCACCTTCAA ctccctctttttcttgtgttgtgtgtcttgtgtccctggtctcttcacagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAAcAACTGGTCACCTTCAAgtgagtgtggtctatggggatattaggaggaatagagtgtcatctatgcg Alignment from Spaln_nt2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAG-AACTGGTCACCTTCAA ctccctctttttcttgtgttgtgtgtcttgtgtccctggtctcttcacagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAACAACTGGTCACCTTCAAgtgagtgtggtctatggggatattaggaggaatagagtgtcatctatgcg Alignment from Pairagon ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAG-AACTGGTCACCTTCAA ctccctctttttcttgtgttgtgtgtcttgtgtccctggtctcttcacagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAACAACTGGTCACCTTCAAgtgagtgtggtctatggggatattaggaggaatagagtgtcatctatgcg Alignment from Exonerate_protein2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAG-AACTGGTCACCTTCAA ctccctctttttcttgtgttgtgtgtcttgtgtccctggtctcttcacagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAACAACTGGTCACCTTCAAgtgagtgtggtctatggggatattaggaggaatagagtgtcatctatgcg Alignment from Exonerate_coding2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAG-AACTGGTCACCTTCAA ctccctctttttcttgtgttgtgtgtcttgtgtccctggtctcttcacagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAACAACTGGTCACCTTCAAgtgagtgtggtctatggggatattaggaggaatagagtgtcatctatgcg Alignment from GeneWise ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA ctccctctttttcttgtgttgtgtgtcttgtgtccctggtctcttcacagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTACTCTGAGGAAAA--TGGAACAACTGGTCACCTTCAAgtgagtgtggtctatggggatattaggaggaatagagtgtcatctatgcg #### Gldc_ID6401_14 --> 0 - 0 Original Alignment GGATCCTGCACCATGAAGCTC-AATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from CESAR GGATCCTGCACCATGAAGCTC-AATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Spaln_aa2Genome GGATCCTGCACCATGAAGCTC-AATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCcAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Spaln_nt2Genome GGATCCTGCACCATGAAGCTC-AATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Pairagon GGATCCTGCACCATGAAGCT-CAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Exonerate_protein2genome GGATCCTGCACCATGAAGCTC-AATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Exonerate_coding2genome ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagggatcttgcaccatgaagctccaatagctcagctgagcttggtgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from GeneWise ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagggatcttgcaccatgaagctccaatagctcagctgagcttggtgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTC-GTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagtTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTC-GTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagtTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTC-GTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTcCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCT-CGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCC-TCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTC-GTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTC-GTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTC-GTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt #### Gpam_ID11539_10 --> 0 - 0 Original Alignment GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAA-AACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAACAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from CESAR GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAA-AACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAACAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Spaln_aa2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAA-AACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAcAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Spaln_nt2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAA-AACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAACAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Pairagon GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAA-AACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAACAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Exonerate_protein2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAA-AACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAACAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Exonerate_coding2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAA-AACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAACAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from GeneWise GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGG-AAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAACAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta #### Gpha2_ID1505_2 --> 2 - 0 Original Alignment ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAG-GCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgataggtatcctagtttttcagccgtgttttttctgcttcatagcaTTCAATGTTGCAGCAGTGCATAGTGACCACCTTGGAAAGTGTCAGGCATCCCAATTATCACAGCGCCTGTGTGGGATACTGTGAGTCCAGTGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtaagtgttctgtgtctgcaagttacactttggacacatatgccaatggt Alignment from CESAR ccTTCAATGTGACG---GTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAG-GCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgataggtatcctagtttttcagccgtgttttttctgcttcatagcaTTCAATGTTGCAGCAGTGCATAGTGACCACCTTGGAAAGTGTCAGGCATCCCAATTATCACAGCGCCTGTGTGGGATACTGTGAGTCCAGTGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtaagtgttctgtgtctgcaagttacactttggacacatatgccaatggt Alignment from Spaln_aa2Genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAG-GCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgataggtatcctagtttttcagccgtgttttttctgcttcatagCATTCAATGTTGCAGCAGTGCATAGTGACCACCTTGGAAAGTGTCAGGCATCCCAATTATCACAGcGCCTGTGTGGGATACTGTGAGTCCAGTGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtaagtgttctgtgtctgcaagttacactttggacacatatgccaatggt Alignment from Spaln_nt2Genome CCTTCAATGTGACGG---TGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAG-GCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgataggtatcctagtttttcagccgtgttttttctgcttcatagCATTCAATGTTGCAGCAGTGCATAGTGACCACCTTGGAAAGTGTCAGGCATCCCAATTATCACAGCGCCTGTGTGGGATACTGTGAGTCCAGTGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtaagtgttctgtgtctgcaagttacactttggacacatatgccaatggt Alignment from Pairagon ------------------------------------------------------------TGCACCCCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAG-GCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG CAATATGATAGGTATCCTAGTTTTTCAGCCGTGTTTTTTCTGCTTCATAGCATTCAATGTTGCAG-------------CAGTGCATAGTGACCACCTTGGAAAGTGTCAGGCATCCCAATTATCACAGCGCCTGTGTGGGATACTGTGAGTCCAGTGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtaagtgttctgtgtctgcaagttacactttggacacatatgccaatggt Alignment from Exonerate_protein2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAG-GCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgataggtatcctagtttttcagccgtgttttttctgcttcatagCATTCAATGTTGCAGCAGTGCATAGTGACCACCTTGGAAAGTGTCAGGCATCCCAATTATCACAGCGCCTGTGTGGGATACTGTGAGTCCAGTGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtaagtgttctgtgtctgcaagttacactttggacacatatgccaatggt Alignment from Exonerate_coding2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAG-GCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgataggtatcctagtttttcagccgtgttttttctgcttcatagCATTCAATGTTGCAGCAGTGCATAGTGACCACCTTGGAAAGTGTCAGGCATCCCAATTATCACAGCGCCTGTGTGGGATACTGTGAGTCCAGTGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtaagtgttctgtgtctgcaagttacactttggacacatatgccaatggt Alignment from GeneWise CCTTCAATGTGACG---GTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAG-GCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgataggtatcctagtttttcagccgtgttttttctgcttcatagCATTCAATGTTGCAGCAGTGCATAGTGACCACCTTGGAAAGTGTCAGGCATCCCAATTATCACAGCGCCTGTGTGGGATACTGTGAGTCCAGTGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtaagtgttctgtgtctgcaagttacactttggacacatatgccaatggt #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCT-ATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCT-ATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCACATA--GGGACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCT-ATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGC-TATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCT-ATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCACATA---GGGACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCT-ATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCACATA---GGGACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCACATA--GGGACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta #### Hells_ID7706_13 --> 0 - 2 Original Alignment AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGT-AGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGag ccttgccatcttagcactaagaacaaactcccgtttttgtatgtctacagAAAGATACAGTAGAGCTTAGTCCAATTGGAAGACCTAAACGACGAAGTCAGAAAG---ATAAATTACAGTGAACTCGATCAGTTTCCCAGTGAACTAGAAAAATTAATAAGCCAAATACAG---CAAGCTAACAGAGATaggtgtggctttagaacgatctttaaactaggggttggcttgttctgattta Alignment from CESAR AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGag ccttgccatcttagcactaagaacaaactcccgtttttgtatgtctacagAAAGATACAGTAGAGCTTAGTCCAATTGGAAGACCTAAACGACGAAGTCAGAAA--GATAAATTACAGTGAACTCGATCAGTTTCCCAGTGAACTAGAAAAATTAATAAGCCAAATACAGCAA---GCTAACAGAGATaggtgtggctttagaacgatctttaaactagggactcaggctcctggtttct Alignment from Spaln_aa2Genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatcttagcactaagaacaaactcccgtttttgtatgtctacagAAAGATACAGTAGAGCTTAGTCCAATTGGAAGACCTAAACGACGAAGTCAGAAAG--ATAAATTACAGTGAACTCGATCAGTTTCCCAGTGAACTAGAAAAATTAATAAGCCAAATACAG---CAAGCTAACAGAGATAGgtgtggctttagaacgatctttaaactaggggttggcttgttctgattta Alignment from Spaln_nt2Genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGT-AGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatcttagcactaagaacaaactcccgtttttgtatgtctacagAAAGATACAGTAGAGCTTAGTCCAATTGGAAGACCTAAACGACGAAGTCAGAAAG---ATAAATTACAGTGAACTCGATCAGTTTCCCAGTGAACTAGAAAAATTAATAAGCCAAATACAGC---AAGCTAACAGAGATAGgtgtggctttagaacgatctttaaactaggggttggcttgttctgattta Alignment from Pairagon AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGT-AGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatcttagcactaagaacaaactcccgtttttgtatgtctacagAAAGATACAGTAGAGCTTAGTCCAATTGGAAGACCTAAACGACGAAGTCAGAAAG---ATAAATTACAGTGAACTCGATCAGTTTCCCAGTGAACTAGAAAAATTAATAAGCCAAATACAGC---AAGCTAACAGAGATAGgtgtggctttagaacgatctttaaactaggggttggcttgttctgattta Alignment from Exonerate_protein2genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGT-AGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatcttagcactaagaacaaactcccgtttttgtatgtctacagAAAGATACAGTAGAGCTTAGTCCAATTGGAAGACCTAAACGACGAAGTCAGAAAG---ATAAATTACAGTGAACTCGATCAGTTTCCCAGTGAACTAGAAAAATTAATAAGCCAAATACAG---CAAGCTAACAGAGATAGgtgtggctttagaacgatctttaaactaggggttggcttgttctgattta Alignment from Exonerate_coding2genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGT-AGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatcttagcactaagaacaaactcccgtttttgtatgtctacagAAAGATACAGTAGAGCTTAGTCCAATTGGAAGACCTAAACGACGAAGTCAGAAAG---ATAAATTACAGTGAACTCGATCAGTTTCCCAGTGAACTAGAAAAATTAATAAGCCAAATACAG---CAAGCTAACAGAGATAGgtgtggctttagaacgatctttaaactaggggttggcttgttctgattta Alignment from GeneWise AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatcttagcactaagaacaaactcccgtttttgtatgtctacagAAAGATACAGTAGAGCTTAGTCCAATTGGAAGACCTAAACGACGAAGTCAGAAAG--ATAAATTACAGTGAACTCGATCAGTTTCCCAGTGAACTAGAAAAATTAATAAGCCAAATACAG---CAAGCTAACAGAGATAGgtgtggctttagaacgatctttaaactaggggttggcttgttctgattta #### Hells_ID7707_14 --> 1 - 0 Original Alignment gACTGTTGTGGAAGGT-AATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tttctttagaacgatctttaaactagggactcaggctcctggtttcttagaACAGTTGTGGAAGGTCAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTAATCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from CESAR gACTGTTGTGGAAGGT-AATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tggctttagaacgatctttaaactagggactcaggctcctggtttcttagaACAGTTGTGGAAGGTCAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTAATCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Spaln_aa2Genome GACTGTTGTGGAAGGT-AATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tttctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTcAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTAATCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Spaln_nt2Genome GACTGTTGTGGAAGGT-AATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tttctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTCAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTAATCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Pairagon ---------------------------------------------------ACTGTTGTGGAAGGT-AATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG TTTCTTTAGAACGATCTTTAAACTAGGGACTCAGGCTCCTGGTTTCTTAGAACAGTTGTGGAAGGTCAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTAATCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Exonerate_protein2genome GACTGTTGTGGAAGGT-AATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tttctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTCAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTAATCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from Exonerate_coding2genome GACTGTTGTGGAAGGT-AATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG tttctttagaacgatctttaaactagggactcaggctcctggtttcttagAACAGTTGTGGAAGGTCAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTAATCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact Alignment from GeneWise ----------------------------ACTGTTGTGGAAGGT------------------------AATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG TTTCTTTAGAACGATCTTTAAACTAGGGACTCAGGCTCCTGGTTTCTTAGAACAGTTGTGGAAGGTCAATATTCCTATAGAATCAGAAGTTAATTTGAAGTTGCGGAATATCATGATGTTACTTCAGAGATGCTGTAATCACCCTTACATGATTGAATATCCCATTGACCCAGTCACACAGGAATTTAAAgtgagttattggcatacggcattggagggacatggagaatgaatattact #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagatACATCTGATCTGCACTTTCAAATTCAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from CESAR atACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagatACATCTGATCTGCACTTTCAAATTCAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTcAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTCAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAA-TAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTCAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTCAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTCAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cctcttcagcactgaatgttgtagtgacctctctcctcctcctcctccagATACATCTGATCTGCACTTTCAAATTCAGCAAAGACCGGTATGGAGGCCAACCACTGTTCTCAGAAAAATTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGGTGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtatgtcactagcttcagtgggacaaagtatgctagcttgttcctcactc #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTG-GGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGCGGAGCTGAGACTGTCCTCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTG-GGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGCGGAGCTGAGACTGTCCTCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTG-GGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGcGGAGCTGAGACTGTCCTCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTG-GGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGCGGAGCTGAGACTGTCCTCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTG-GGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGCGGAGCTGAGACTGTCCTCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTG-GGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGCGGAGCTGAGACTGTCCTCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTG-GGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGCGGAGCTGAGACTGTCCTCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTT-CTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtaggaaacctaataatgcttctaattttttttgttgtttatttttagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGCGGAGCTGAGACTGTCCTCACGCAAATGAGGgtgagtaattggcgaggtctgattagcagaattggcagaggtcatagccc #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagtgGGTGGGCAGCACCGAGGCCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from CESAR tgGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagtgGGTGGGCAGCACCGAGGCCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCcTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGG-CTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Pairagon TGGGCGGGCAGCGCCGAGG-CTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from GeneWise GCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagtgggtgggcagCACCGAGGCCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGA-CTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACCTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCAGGGTCCGTTGGCTCCCTTCTAGCTAGCTATTCTGTGggtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from CESAR GTGACCAGGATTGGA-CTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACCTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCAGGGTCCGTTGGCTCCCTTCTAGCTAGCTATTCTGTGggtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Spaln_aa2Genome GGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacaggtgaccagGATTGGACCTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCAGGGTCCGTTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Spaln_nt2Genome GTGACCAGGATTGGAC-TGATAGTTCA---CAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACCTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCAGGGTCCGTTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Pairagon GTGACCAGGATTGGA-CTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACCTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCAGGGTCCGTTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Exonerate_protein2genome GTGACCAGGATTGGA----CTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACCTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCAGGGTCCGTTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from Exonerate_coding2genome GTGACCAGGATTGGA----CTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACCTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCAGGGTCCGTTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc Alignment from GeneWise GTGACCAGGATTGGA-CTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggagcaggatcattaagggttattttctcttgacagGTGACCAGGATTGGACCTGATAGTTCATCACAAGTCTAGCAAGCAGGATTTTCAGGTGCTGGCAGGGTCCGTTGGCTCCCTTCTAGCTAGCTATTCTGTGGgtgagattgctgtcagttctaaaccaccatctccaaccaagctgtgttgc #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTC-CTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcaggTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAACTTATGaagtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTC-CTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcaggTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAACTTATGaagtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTC-CTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCcCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCC-TGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACC---CCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTT-CCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACC---CCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTC-CTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTC-CTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTC-CTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtaatgtaaaggccaatattaagtccatcttgcctcttcagGTTGCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTATCAGCTCAGCTTCCCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAACTTATGAAgtaagaggaccaagcccaaaaacttatcaagctagggcgttatgtctgag #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTG-CGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tgtgttatcccatgccctgggtgccccatctgctctcctttgcctggcagAGCCCTGGTGCCCCACTGACCCAAATTCTATGCCAACTGCTGGATGGATTCTCACTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCTTACGATCCCAGCCCTTTGTGACTGACCCACCACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTTCAGgtagtttctcagaactaatgtggaccaattttggaggaccctgactaggg Alignment from CESAR AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tgtgttatcccatgccctgggtgccccatctgctctcctttgcctggcagAGCCCTGGTGCCCCACTGACCCAAATTCTATGCCAACTGCTGGATGGATTCTCACTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCTTACGATCCCAGCCCTTTGTGACTGAC--CCACCACCAGAACAACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTTCAGgtagtttctcagaactaatgtggaccaattttggaggaccctgactaggg Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tgtgttatcccatgccctgggtgccccatctgctctcctttgcctggcagAGCCCTGGTGCCCCACTGACCCAAATTCTATGCCAACTGCTGGATGGATTCTCACTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCTTACGATCCCAGCCCTTTGTGACTGACC--CACCACCAGAACAACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTTCAGgtagtttctcagaactaatgtggaccaattttggaggaccctgactaggg Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tgtgttatcccatgccctgggtgccccatctgctctcctttgcctggcagAGCCCTGGTGCCCCACTGACCCAAATTCTATGCCAACTGCTGGATGGATTCTCACTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCTTACGATCCCAGCCCTTTGTGACTGACC--CACCACCAGAACAACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTTCAGgtagtttctcagaactaatgtggaccaattttggaggaccctgactaggg Alignment from Pairagon AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tgtgttatcccatgccctgggtgccccatctgctctcctttgcctggcagAGCCCTGGTGCCCCACTGACCCAAATTCTATGCCAACTGCTGGATGGATTCTCACTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCTTACGATCCCAGCCCTTTGTGACTGACC--CACCACCAGAACAACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTTCAGgtagtttctcagaactaatgtggaccaattttggaggaccctgactaggg Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGAC-CTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tgtgttatcccatgccctgggtgccccatctgctctcctttgcctggcagAGCCCTGGTGCCCCACTGACCCAAATTCTATGCCAACTGCTGGATGGATTCTCACTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCTTACGATCCCAGCCCTTTGTGACTGACCCACCACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTTCAGgtagtttctcagaactaatgtggaccaattttggaggaccctgactaggg Alignment from Exonerate_coding2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGAC-CTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tgtgttatcccatgccctgggtgccccatctgctctcctttgcctggcagAGCCCTGGTGCCCCACTGACCCAAATTCTATGCCAACTGCTGGATGGATTCTCACTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCTTACGATCCCAGCCCTTTGTGACTGACCCACCACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTTCAGgtagtttctcagaactaatgtggaccaattttggaggaccctgactaggg Alignment from GeneWise AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tgtgttatcccatgccctgggtgccccatctgctctcctttgcctggcagAGCCCTGGTGCCCCACTGACCCAAATTCTATGCCAACTGCTGGATGGATTCTCACTTCTGGAGAAAAGGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCTTACGATCCCAGCCCTTTGTGACTGACC--CACCACCAGAACAACAAGTTCATCAAGAATCGGGTAGGGCAGGAGGTTCAGgtagtttctcagaactaatgtggaccaattttggaggaccctgactaggg #### Hps1_ID8620_8 --> 0 - 1 Original Alignment GACACAGACAGCATCTCCCTCCCTGAAGAG-TACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGAT---AATTCC---CCTGAAGAGCTATTTCACTCCTTCTCCTTCCCCAAGT------GGTCCAggtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from CESAR GACACAGACAGCATCTCCCTCCCTGAAGAG-TACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGATAAT---TCC---CCTGAAGAGCTATTTCACTCCTTCTCCTTCCCCAAGT------GGTCCAggtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Spaln_aa2Genome -----AGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTA gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGATAATTCCCCTGAAGAGCTATTTCACTCCTTCTCCTTCCCCAAGTGGTCCAGGTGAGTGTAgcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Spaln_nt2Genome GACACAGACAGCATCTCCCTCCCTGAAGAG-TACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGATA--AT-TC---CCCTGAAGAGCTATTTCACTCCTTCTCCTTCCCCAAGTG------GTCCAGgtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Pairagon GACACAGA-----CAGCATCTCCCTCCCTGAAGAG-TACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGATAATTC-----------CCCTGAAGAGCTATTTCACTCCTTCTCCTTCCCCAAGTG------GTCCAGgtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Exonerate_protein2genome GACACAGACAGCATCTCCCTCCCTGAAGAG-TACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTAGCCT gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcagGATACTGAT------AATTCCCCTGAAGAGCTATTTCACTCCTTCTCCTTCCCCAAGTGGTCCAGGTGAGTGTAGCAGgtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from Exonerate_coding2genome gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcaggatactgataattcccctgaagagctatttcactccttctccttccccaagtggtccaggtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga Alignment from GeneWise gaagatgttataaggtggtctggaatgtccctttgtgttccatactgcaggatactgataattcccctgaagagctatttcactccttctccttccccaagtggtccaggtgagtgtagcaggtgtgttgccccgttgtgtcacttagatatgttcaga #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACC-AGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACC-AGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACC-AGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCcAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACC-AGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGT-CCCCACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACC-AGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Exonerate_coding2genome tgtgccatgctattctgctccgtcattagagccactttactttgcactagaggcgtccaaagagtagccaaaacataccagtgccacaggccaggagccagagtacctcagtacctgcccaggggttgtaaggagacagtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCC-ACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAG-GACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG tcccccctcaccattttagttgtattctgctgatttcctctgccttccagcCAAGGCGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTGCATCGATCCACAGCCTTCACCAGCCATGACGGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtcggtgcaaatcccagaataagggtagactaattgcagtaagatcaaaa Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAG-GACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tcccccctcaccattttagttgtattctgctgatttcctctgccttccagcCAAGGCGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTGCATCGATCCACAGCCTTCACCAGCCATGACGGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtcggtgcaaatcccagaataagggtagactaattgcagtaagatcaaaa Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAG-GACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGAC---AGCCCTCAG tcccccctcaccattttagttgtattctgctgatttcctctgccttccagCCAAGGCGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTGCATcGATCCACAGCCTTCACCAGCCATGACGGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtcggtgcaaatcccagaataagggtagactaattgcagtaagatcaaaa Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAG-GACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG tcccccctcaccattttagttgtattctgctgatttcctctgccttccagCCAAGGCGCAAGCACCCTATGTCCAGCAGATTTCC---------TTCTCCTAGTGCATCGATCCACAGCCTTCACCAGCCATGACGGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtcggtgcaaatcccagaataagggtagactaattgcagtaagatcaaaa Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTC------------------CAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAG---CGACAGCCCTCAG tcccccctcaccattttagttgtattctgctgatttcctctgccttccagCCAAGGCGCAAGCACCCTATGTCCAGCAGATTTCCT--------------------------TCTCCTAGTGCATCGATCCACAGCCTTCACCAGCCATGACGGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtcggtgcaaatcccagaataagggtagactaattgcagtaagatcaaaa Alignment from Exonerate_protein2genome tcccccctcaccattttagttgtattctgctgatttcctctgccttccagccaaggcgcaagcaccctatgtccagcagatttccttctcctagtgcatcgatccacagccttcaccagccatgacggaggaggagggggagcaagaagatggtcacagcagcccacaggtcggtgcaaatcccagaataagggtagactaattgcagtaagatcaaaa Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAG-GACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tcccccctcaccattttagttgtattctgctgatttcctctgccttccagCCAAGGCGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTGCATCGATCCACAGCCTTCACCAGCCATGACGGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtcggtgcaaatcccagaataagggtagactaattgcagtaagatcaaaa Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTG-CAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tcccccctcaccattttagttgtattctgctgatttcctctgccttccagCCAAGGCGCAAGCACCCTATGTCCAGCAGATTTCCTT---------CTCCTAGTGCATCGATCCACAGCCTTCACCAGCCATGACGGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtcggtgcaaatcccagaataagggtagactaattgcagtaagatcaaaa #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTG-CAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACCAGGAAGAACAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTG-CAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACCAGGAAGAACAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTG-CAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCAcCAGGAAGAACAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGC-AGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACCAGGAAGAACAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTG-CAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACCAGGAAGAACAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAA-CTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACCAGGAAGAACAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAA-CTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACCAGGAAGAACAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAA-CTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtagggggagaggacgatcccctgtgtccccgcagGAGGAGAAGCAGCACCTGGCTAAGCAGCAGCCACCAGGAAGAACAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtaagtctgaaagctagcctccagatcaaatatatgcttactgtgaatgg #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcaggGAGATGCAAGAGAGAGAGCAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from CESAR gGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcaggGAGATGCAAGAGAGAGAGCAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGcAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCT-GCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGCAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Pairagon GGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGCAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGCAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagGGAGATGCAAGAGAGAGAGCAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ttgttggaaactagcttcatttgtagacctgactgggcctgttttttcagggagATGCAAGAGAGAG---AGCAAGGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtaagagccttgtagacatatattctccacagtaaatctgatctggagca #### Incenp_ID2608_11 --> 1 - 0 Original Alignment gAAGCGTGAAGAGCGC-CTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcaggAAGCGTGAAGAGCGGCCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from CESAR gAAGCGTGAAGAGCGC-CTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcaggAAGCGTGAAGAGCGGCCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Spaln_aa2Genome GAAGCGTGAAGAGCGC-CTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGcCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Spaln_nt2Genome GAAGCGTGAAGAGCG-CCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Pairagon GAAGCGTGAAGAGC-GCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Exonerate_protein2genome GAAGCGTGAAGAGCGC-CTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from Exonerate_coding2genome GAAGCGTGAAGAGCGC-CTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcagGAAGCGTGAAGAGCGGCCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct Alignment from GeneWise -CTGAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctattgctttcctttgcattgcaggaagCGTGAAG------AGCGGCCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTAGAACAAATGAAAGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtaaggctaccctataacacattaacacagggcagtgccttcctttggct #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAA-CAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcaggAGGAAACGTAGTTACAAACAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from CESAR gAGGAAACGCAGTTACAAACAG-GCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcaggAGGAAACGTAGTTACAAACAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAG-GCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAACAAgGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACA-GGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAACAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Pairagon GAGGAAACGCAGTTACAAAC-AGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAACAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAG-GCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAACAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAG-GCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAACAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from GeneWise GAGGAAACGCAGTTACAAACAG-GCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAACAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTC-ATCAATTACTACAAG gtggtagggtttccacagatggaaactgaatttttacttttcttacacagtGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTACATCAATTACTACAAGgtaagtgggcataactaactagatgacacaacttgcttatacttaaacac Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTC-ATCAATTACTACAAG gtggtagggtttccacagatggaaactgaatttttacttttcttacacagtGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTACATCAATTACTACAAGgtaagtgggcataactaactagatgacacaacttgcttatacttaaacac Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTC-ATCAATTACTACAAG gtggtagggtttccacagatggaaactgaatttttacttttcttacacagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTAcATCAATTACTACAAGgtaagtgggcataactaactagatgacacaacttgcttatacttaaacac Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCT-CATCAATTACTACAAG gtggtagggtttccacagatggaaactgaatttttacttttcttacacagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTACATCAATTACTACAAGgtaagtgggcataactaactagatgacacaacttgcttatacttaaacac Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCT-CATCAATTACTACAAG gtggtagggtttccacagatggaaactgaatttttacttttcttacacagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTACATCAATTACTACAAGgtaagtgggcataactaactagatgacacaacttgcttatacttaaacac Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTC-ATCAATTACTACAAG gtggtagggtttccacagatggaaactgaatttttacttttcttacacagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTACATCAATTACTACAAGgtaagtgggcataactaactagatgacacaacttgcttatacttaaacac Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTC-ATCAATTACTACAAG gtggtagggtttccacagatggaaactgaatttttacttttcttacacagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTACATCAATTACTACAAGgtaagtgggcataactaactagatgacacaacttgcttatacttaaacac Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAAC-CTCATCAATTACTACAAG gtggtagggtttccacagatggaaactgaatttttacttttcttacacagTGAGATTAGTGAAATTACTAGTATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTACATCAATTACTACAAGgtaagtgggcataactaactagatgacacaacttgcttatacttaaacac #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTAC-AATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACCAACATTGCTTGCATTTTAACTCTACCCCCCTACCAGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCagtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from CESAR GAAAAGGAATCCACAGAAGATTAC-AATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACCAACATTGCTTGCATTTTAACTCTACCCCCCTACCAGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCagtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTAC-AATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACcAACATTGCTTGCATTTTAACTCTACCCCCCTACCAGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTAC-AATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACCAACATTGCTTGCATTTTAACTCTACCCCCCTACCAGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Pairagon GAAAAGGAATCCACAGAAGATTA-CAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACCAACATTGCTTGCATTTTAACTCTACCCCCCTACCAGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTAC-AATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACCAACATTGCTTGCATTTTAACTCTACCCCCCTACCAGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTAC-AATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACCAACATTGCTTGCATTTTAACTCTACCCCCCTACCAGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg Alignment from GeneWise GAAAAGGAATCCACAGAAGATTAC-AATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtccatgtccctaccctccaacctgttcactgttccaatcttccccacagGAGAAAGAGTCCACAGAAGATTACCAACATTGCTTGCATTTTAACTCTACCCCCCTACCAGCGGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtaaatatatgctatctgctcatggtctggtagctaaagagatgaggttg #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGG---GCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG tctcatgcttactgtaggacccttctcaatttttttgttttcttttttagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCTCAGGCTGGGTGGAAGCGCCAAATCTAACTGCTTAGGCACTGATGAGgtacggccaagcacccaagcagggctggacttaaatttaatttctgattg Alignment from CESAR AATGGGTCAGCCCGTAGG---GCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG tctcatgcttactgtaggacccttctcaatttttttgttttcttttttagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCTCAGGCTGGGTGGAAGCGCCAAATCTAACTGCTTAGGCACTGATGAGgtacggccaagcacccaagcagggctggacttaaatttaatttctgattg Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGG---GCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG tctcatgcttactgtaggacccttctcaatttttttgttttcttttttagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCTCAGGCTGGGTGGAAGCGCcAAATCTAACTGCTTAGGCACTGATGAGgtacggccaagcacccaagcagggctggacttaaatttaatttctgattg Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCAG---TGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG tctcatgcttactgtaggacccttctcaatttttttgttttcttttttagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCTCAGGCTGGGTGGAAGCGCCAAATCTAACTGCTTAGGCACTGATGAGgtacggccaagcacccaagcagggctggacttaaatttaatttctgattg Alignment from Pairagon AATGGGTCAGCCCGTAGG---GCAGTGGCAGCCCAGCCTGGACGGAAGCG-GAAATCTAATTGCTTGGGCACTGATGAG tctcatgcttactgtaggacccttctcaatttttttgttttcttttttagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCTCAGGCTGGGTGGAAGCGCCAAATCTAACTGCTTAGGCACTGATGAGgtacggccaagcacccaagcagggctggacttaaatttaatttctgattg Alignment from Exonerate_protein2genome AATGGGTCA---GCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG tctcatgcttactgtaggacccttctcaatttttttgttttcttttttagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCTCAGGCTGGGTGGAAGCGCCAAATCTAACTGCTTAGGCACTGATGAGgtacggccaagcacccaagcagggctggacttaaatttaatttctgattg Alignment from Exonerate_coding2genome AATGGGTCA---GCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG tctcatgcttactgtaggacccttctcaatttttttgttttcttttttagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCTCAGGCTGGGTGGAAGCGCCAAATCTAACTGCTTAGGCACTGATGAGgtacggccaagcacccaagcagggctggacttaaatttaatttctgattg Alignment from GeneWise AATGGGTCAGCC---CGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG tctcatgcttactgtaggacccttctcaatttttttgttttcttttttagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCTCAGGCTGGGTGGAAGCGCCAAATCTAACTGCTTAGGCACTGATGAGgtacggccaagcacccaagcagggctggacttaaatttaatttctgattg #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCG-GTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTCGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCG-GTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTCGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCG-GTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTcGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCG-GTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTCGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTC-GGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTCGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCG-GTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTCGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Exonerate_coding2genome ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagaaacggaagattgaggtagtttcgccaaccagtttggtgcctagtgagacggctgcagtctctcgttttccctcaggtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG- ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTCGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAAC-GGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctgcaacattcccccactctcttccctcatcccaccagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATCGGACTCCCTGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgtaaggggcttgaccatttctgtgcccgatctctctgatccaccctcgca Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAAC-GGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctgcaacattcccccactctcttccctcatcccaccagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATCGGACTCCCTGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgtaaggggcttgaccatttctgtgcccgatctctctgatccaccctcgca Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAAC-GGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctgcaacattcccccactctcttccctcatcccaccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATcGGACTCCCTGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgtaaggggcttgaccatttctgtgcccgatctctctgatccaccctcgca Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAA-CGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctgcaacattcccccactctcttccctcatcccaccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATCGGACTCCCTGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgtaaggggcttgaccatttctgtgcccgatctctctgatccaccctcgca Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAA-CGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctgcaacattcccccactctcttccctcatcccaccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATCGGACTCCCTGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgtaaggggcttgaccatttctgtgcccgatctctctgatccaccctcgca Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAAC-GGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctgcaacattcccccactctcttccctcatcccaccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATCGGACTCCCTGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgtaaggggcttgaccatttctgtgcccgatctctctgatccaccctcgca Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAAC-GGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctgcaacattcccccactctcttccctcatcccaccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATCGGACTCCCTGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgtaaggggcttgaccatttctgtgcccgatctctctgatccaccctcgca Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAAC-GGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctgcaacattcccccactctcttccctcatcccaccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATCGGACTCCCTGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgtaaggggcttgaccatttctgtgcccgatctctctgatccaccctcgca #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACCATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from CESAR GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACCATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Spaln_aa2Genome GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACcATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Spaln_nt2Genome GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACCATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Pairagon GAAATGCTCGA-CATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACCATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Exonerate_protein2genome GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACCATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Exonerate_coding2genome GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACCATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from GeneWise GAAATGCTCGAC-ATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACCATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCT-TTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCT-TTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCT-TTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTcTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCT-TTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCT-TTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCT-TTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCT-TTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGG-GCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTCTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTCTTCAATGCC-TTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaacgtagatatgaatccgctctgtgtccttgatctgcagacTCCAGCAACTATGCTACTTTCCTCTTCAATGCCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtaagacaagaaaaaagatgcactaaggaaaccaaccccgttaactgtgc Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTCAATGCC-TTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaacgtagatatgaatccgctctgtgtccttgatctgcagacTCCAGCAACTATGCTACTTTCCTCTTCAATGCCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtaagacaagaaaaaagatgcactaaggaaaccaaccccgttaactgtgc Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCC-TTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaacgtagatatgaatccgctctgtgtccttgatctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCcTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtaagacaagaaaaaagatgcactaaggaaaccaaccccgttaactgtgc Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATG-CCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaacgtagatatgaatccgctctgtgtccttgatctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtaagacaagaaaaaagatgcactaaggaaaccaaccccgttaactgtgc Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCTCTTCAATG-CCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaacgtagatatgaatccgctctgtgtccttgatctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtaagacaagaaaaaagatgcactaaggaaaccaaccccgttaactgtgc Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCC-TTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaacgtagatatgaatccgctctgtgtccttgatctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtaagacaagaaaaaagatgcactaaggaaaccaaccccgttaactgtgc Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCC-TTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaacgtagatatgaatccgctctgtgtccttgatctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtaagacaagaaaaaagatgcactaaggaaaccaaccccgttaactgtgc Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaacgtagatatgaatccgctctgtgtccttgatctgcagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtaagacaagaaaaaagatgcactaaggaaaccaaccccgttaactgtgc #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCT-CAGTTCTTTCCCCAAGGAg agcgccacattctgtgattggttatattccttactggtgctttgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGGTTTATTCACCAGTTCTTTCCACAAGAGggtgagacacaggcatagtgggaagatgtaaggacagcagagccaagggaa Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCT-CAGTTCTTTCCCCAAGGAg agcgccacattctgtgattggttatattccttactggtgctttgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGGTTTATTCACCAGTTCTTTCCACAAGAGggtgagacacaggcatagtgggaagatgtaaggacagcagagccaagggaa Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCT-CAGTTCTTTCCCCAAGGAG agcgccacattctgtgattggttatattccttactggtgctttgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGGTTTATTCAcCAGTTCTTTCCACAAGAGGgtgagacacaggcatagtgggaagatgtaaggacagcagagccaagggaa Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTC-AGTTCTTTCCCCAAGGAG agcgccacattctgtgattggttatattccttactggtgctttgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGGTTTATTCACCAGTTCTTTCCACAAGAGGgtgagacacaggcatagtgggaagatgtaaggacagcagagccaagggaa Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTC-TCAGTTCTTTCCCCAAGGAG agcgccacattctgtgattggttatattccttactggtgctttgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGGTTTATTCACCAGTTCTTTCCACAAGAGGgtgagacacaggcatagtgggaagatgtaaggacagcagagccaagggaa Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCT-CAGTTCTTTCCCCAAGGAG agcgccacattctgtgattggttatattccttactggtgctttgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGGTTTATTCACCAGTTCTTTCCACAAGAGGgtgagacacaggcatagtgggaagatgtaaggacagcagagccaagggaa Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCT-CAGTTCTTTCCCCAAGGAG agcgccacattctgtgattggttatattccttactggtgctttgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGGTTTATTCACCAGTTCTTTCCACAAGAGGgtgagacacaggcatagtgggaagatgtaaggacagcagagccaagggaa Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTAT-TCTCAGTTCTTTCCCCAAGGAG agcgccacattctgtgattggttatattccttactggtgctttgttttagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAGGTTTATTCACCAGTTCTTTCCACAAGAGGgtgagacacaggcatagtgggaagatgtaaggacagcagagccaagggaa #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGG-GGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagacTTTAATGATGAATATCTACAACAGCGGTGGGCTGAGACACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCaggtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGG-GGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagacTTTAATGATGAATATCTACAACAGCGGTGGGCTGAGACACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCaggtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGG-GGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGcGGTGGGCTGAGACACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGG-GGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGCGGTGGGCTGAGACACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGG-GGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGCGGTGGGCTGAGACACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGG-GGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGCGGTGGGCTGAGACACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGG-GGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGCGGTGGGCTGAGACACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac Alignment from GeneWise ATTTTAATGTAGAGTATATCCAG-CGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA atgatcaccgatctcacaaaagtctgtttaactttatttctttgattcagACTTTAATGATGAATATCTACAACAGCGGTGGGCTGAGACACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtgctcatgggccacagtcctgcgataagtcaggcatatgagccac #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagggCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAACAGG---------TCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGACATAAAGGGATATTCTTTTATAAAAggtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagggCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGACATAAAGGGATATTCTTTTATAAAAggtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAcATTGCCCAGGACATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAC-TTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGACATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAC-TTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGACATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGACATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTGGACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttgggGATTGCAGTTAAAGTAAACTGTTCATTTGTGTTACAGGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGACATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gatacattttggggattgcagttaaagtaaactgttcatttgtgttacagGGCACTTTACGAACTCTCTAACTATCCCAGAGTTTGAAGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACATTGCCCAGGACATAAAGGGATATTCTTTTATAAAAGgtgagtccatcttgttaaagaaggagcatacattccaactatttcacatt #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAG-AACAGTGAAAAGTCAaa ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagaTTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGCAACAGTGAAAAGTCAaagtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAG-AACAGTGAAAAGTCAaa ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagaTTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGCAACAGTGAAAAGTCAaagtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAG ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGCAACAgtgaaaagtcaaagtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAG-AACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGCAACAGTGAAAAGTCAAAgtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAG-AACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGCAACAGTGAAAAGTCAAAgtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAG ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGCAACAgtgaaaagtcaaagtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAG ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGCAACAgtgaaaagtcaaagtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAG ctttttggaacaacagtctttgcagcacgaggattcatgtttttctttagATTGTCGCTGTGTGATCTTGCGGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAGAGGCCAAGAGAGGCTGGGAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGCAACAgtgaaaagtcaaagtgtgtgccattagtgtcataaaatctacccttgtgagtactttctagga #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTG-TTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGCTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattgca Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTG-TTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGCTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaagtctc Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTG-TTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGcTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattgca Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTG-TTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGCTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattgca Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTG-TTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGCTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattgca Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTG-TTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGCTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattgca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTG-TTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGCTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTCCT---GAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattgca #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACA-CTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagtCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGATGCTACACACACACCTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACA-CTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagtCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGATGCTACACACACACCTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACA-CTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGATGCTACACACACAcCTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACAC-TGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGATGCTACACACACACCTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACA-CTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGATGCTACACACACACCTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACA-CTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGATGCTACACACACACCTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACA-CTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tttggaggggaagcctggaattttcaattagtgaaagaatttctcaatagTCCTACGGTCAATACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGATGCTACACACACACCTGAAAGATTGTGCAAGCCACAGTTGCAAACAAgtaagtctttcatcattgaggacagatagtagggccacaatcttgtgtat #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCT-GAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTCGAAGAGGTGGAATACTATTACCCACGGGGCTTGAAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCT-GAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTCGAAGAGGTGGAATACTATTACCCACGGGGCTTGAAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCT-GAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTcGAAGAGGTGGAATACTATTACCCACGGGGCTTGAAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCT-GAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTCGAAGAGGTGGAATACTATTACCCACGGGGCTTGAAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCT-GAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTCGAAGAGGTGGAATACTATTACCCACGGGGCTTGAAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCT-GAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTCGAAGAGGTGGAATACTATTACCCACGGGGCTTGAAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAA-GCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG cacatgaatgccaagcagcactaggatcgactgctccctgtcggctttagGTCCTTGGAAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGTTTTGCTATGCCAGAACCAGGGCAGAGCTCGAAGAGGTGGAATACTATTACCCACGGGGCTTGAAGATATATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtgagatgtaaaggtaagggatgccgataaagaaggcagcacatccggga #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTACAAGGATGCTGCTCACCTG-CTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgcattgttgagggggctcccacctttcactatttcagaGACCAGAATAAATACAGGGATGCTGCTCACCTACCTCAATGAGGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaggctgtctaagtagtctccctgtcctactaccaaagcttccagtccc Alignment from CESAR gGACCAGAATAAGTACAAGGATGCTGCTCACCTG-CTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgcattgttgagggggctcccacctttcactatttcagaGACCAGAATAAATACAGGGATGCTGCTCACCTACCTCAATGAGGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaggctgtctaagtagtctccctgtcctactaccaaagcttccagtccc Alignment from Spaln_aa2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTG-CTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgcattgttgagggggctcccacctttcactatttcagAGACCAGAATAAATACAGGGATGCTGCTCACCTAcCTCAATGAGGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaggctgtctaagtagtctccctgtcctactaccaaagcttccagtccc Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGC-TCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGT-GGCT ccaccagggtcatgcattgttgagggggctcccacctttcactatttcagAGACCAGAATAAATACAGGGATGCTGCTCACCTACCTCAATGAGGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTGTAGGCTgtctaagtagtctccctgtcctactaccaaagcttccagtccc Alignment from Pairagon GGACCAGAATAAGTACAAGGATGCTGCTCACCTG-CTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgcattgttgagggggctcccacctttcactatttcagAGACCAGAATAAATACAGGGATGCTGCTCACCTACCTCAATGAGGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaggctgtctaagtagtctccctgtcctactaccaaagcttccagtccc Alignment from Exonerate_protein2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTG-CTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgcattgttgagggggctcccacctttcactatttcagAGACCAGAATAAATACAGGGATGCTGCTCACCTACCTCAATGAGGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaggctgtctaagtagtctccctgtcctactaccaaagcttccagtccc Alignment from Exonerate_coding2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTG-CTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGC ccaccagggtcatgcattgttgagggggctcccacctttcactatttcagAGACCAGAATAAATACAGGGATGCTGCTCACCTACCTCAATGAGGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTGTAGGctgtctaagtagtctccctgtcctactaccaaagcttccagtccc Alignment from GeneWise GGACCAGAATAAGTACAAGGATGCTGCTCACCTG-CTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACC- ccaccagggtcatgcattgttgagggggctcccacctttcactatttcagAGACCAGAATAAATACAGGGATGCTGCTCACCTACCTCAATGAGGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTGTAGGCTGTCTAAgtagtctccctgtcctactaccaaagcttccagtccc #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTG-GATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTCGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAggtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTG-GATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTCGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAggtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Spaln_aa2Genome GAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAGGTCCCCAAAGACTCCCTTCGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTG-GATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTCGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAAGACTCCC-TGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTCGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTG-GATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTCGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagaaggagaaggtccccaaagactcccttcgatgacctgtttcccaatgaagatgaacagagatcaggtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTA-GAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTACGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from CESAR CTCTGTGTGATACTA-GAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTACGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTA-GAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTAcGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTA-GAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTACGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Pairagon CTCTGTGTGATACTA-GAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTACGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTA-GAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTACGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTA-GAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTACGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc Alignment from GeneWise CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG gtacaggccaacccttacactgttttagtgagtcccatctcccatcccagCTCTGTGTAATTCTACGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaagtctctctctaatccgagtgaaatagttgtgtgacggctgagcttc #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGG-TTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from CESAR GTGTGTGTGGAAGGCCGG-TTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGG-TTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGcCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGT-TGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Pairagon GTGTGTGTGGAAGGCCGG-TTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGG-TTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGG-TTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct Alignment from GeneWise GTGTGTGTGGAAGGCCGG-TTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaagcaaaggatgggtattctggtttatgtcttccagGTTTGTGTAGAAGGACGGCCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagtctgtgccagcaccacctgaaacgaggggattggagtccgcatct #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCTTTC-ACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACagtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTC-ACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACagtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTC-ACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCcACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTT-CACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Pairagon ------------------------------------------------AGGAGTGTGACAATCTCTGGTGGGATGCTTT-CACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA AGGATGAGAGGTTGACAGGGGTGTGCCTCTCACCTTTCTCCACCCTGCAGGAATGTGATAATCTCTGGTGGGATGCTTTCCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTC-ACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTC-ACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from GeneWise --------------------------------------------------GAGTGTGACAATCTCTGGTGGGATGCTTTC-ACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA AGGATGAGAGGTTGACAGGGGTGTGCCTCTCACCTTTCTCCACCCTGCAGGAATGTGATAATCTCTGGTGGGATGCTTTCCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAA-ACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacacctatttctgtgtgcttgcacttctctctaggAGGCACAGTCCATATGGTAATCAACACTGACTATAGGATATTTGAGCTTAACAAGCGGCTACAGAATTGGACAGAAgtaaatcaggatgagaggttgacaggggtgtgcctttttttttttcatgt Alignment from CESAR gAGGCACACACCATATGGTAACCAA-ACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacacctatttctgtgtgcttgcacttctctctaggAGGCACAGTCCATATGGTAATCAACACTGACTATAGGATATTTGAGCTTAACAAGCGGCTACAGAATTGGACAGAAgtaaatcaggatgagaggttgacaggggtgtgcctctcacctttctccac Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAA-ACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacacctatttctgtgtgcttgcacttctctctagGAGGCACAGTCCATATGGTAATCAAcACTGACTATAGGATATTTGAGCTTAACAAGCGGCTACAGAATTGGACAGAAgtaaatcaggatgagaggttgacaggggtgtgcctttttttttttcatgt Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAA-ACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacacctatttctgtgtgcttgcacttctctctagGAGGCACAGTCCATATGGTAATCAACACTGACTATAGGATATTTGAGCTTAACAAGCGGCTACAGAATTGGACAGAAgtaaatcaggatgagaggttgacaggggtgtgcctttttttttttcatgt Alignment from Pairagon GAGGCACACACCATATGGTAACCAA-ACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacacctatttctgtgtgcttgcacttctctctagGAGGCACAGTCCATATGGTAATCAACACTGACTATAGGATATTTGAGCTTAACAAGCGGCTACAGAATTGGACAGAAgtaaatcaggatgagaggttgacaggggtgtgcctttttttttttcatgt Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAA-ACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacacctatttctgtgtgcttgcacttctctctagGAGGCACAGTCCATATGGTAATCAACACTGACTATAGGATATTTGAGCTTAACAAGCGGCTACAGAATTGGACAGAAgtaaatcaggatgagaggttgacaggggtgtgcctttttttttttcatgt Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAA-ACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacacctatttctgtgtgcttgcacttctctctagGAGGCACAGTCCATATGGTAATCAACACTGACTATAGGATATTTGAGCTTAACAAGCGGCTACAGAATTGGACAGAAgtaaatcaggatgagaggttgacaggggtgtgcctttttttttttcatgt Alignment from GeneWise GAGGCACACACCATATGGTAACCAA-ACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggctacatatgccagcacacctatttctgtgtgcttgcacttctctctagGAGGCACAGTCCATATGGTAATCAACACTGACTATAGGATATTTGAGCTTAACAAGCGGCTACAGAATTGGACAGAAgtaaatcaggatgagaggttgacaggggtgtgcctttttttttttcatgt #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCA-CAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccaggtTTCATAGCTTTTTCACCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from CESAR gtTTCATAGCTTTTTCA-CAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccaggtTTCATAGCTTTTTCACCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Spaln_aa2Genome ATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccaggtttcatagCTT---TTTCACCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCA-CAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Pairagon GTTTCATAGCTTTTTCA-CAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCA-CAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCA-CAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccagGTTTCATAGCTTTTTCACCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt Alignment from GeneWise ATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgttcaagctcaggtccttcttcctcttccccatccaggtttcatagCTT---TTTCACCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCTCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAAgtgaggggtttgacattttgtacatttaatagtctattgtgagtgtccgt #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTT-ACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGCTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAggtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from CESAR AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTT-ACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGCTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAggtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTT-ACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGcTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTA-CTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTA--------------------------------------------TGGGAAGAAAAATTCTGA gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGCTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGGTAAGGACATCATGTGCGTGGGAAGAAAAATCCTGAgcaagccaatccac Alignment from Pairagon AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGT-TACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGCTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTT-ACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGCTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTT-ACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGCTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac Alignment from GeneWise AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTT-ACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG gtccactccctcgtactattatttttcttctcttaatttctctgatgtagAGTCAAATCGTAACTTATTGGGGATATCCAAGTGAAGAATATGAAGGGGTGCTCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaaggacatcatgtgcgtgggaagaaaaatcctgagcaagccaatccac #### Lipo1_ID6825_8 --> 0 - 0 Original Alignment GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG atatcctaagtatgacctgtcagcctgggtgtccactctgttttgcgcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagtctctttttccacacttaatgatatgatagggttcaagttggaag Alignment from CESAR GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG atatcctaagtatgacctgtcagcctgggtgtccactctgttttgcgcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagtctctttttccacacttaatgatatgatagggttcaagttggaag Alignment from Spaln_aa2Genome GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG atatcctaagtatgacctgtcagcctgggtgtccactctgttttgcgcagGTAGGTAGAAGTGGTATTcCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagtctctttttccacacttaatgatatgatagggttcaagttggaag Alignment from Spaln_nt2Genome GTAGGAAGAAGTGGTATAC-TTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG atatcctaagtatgacctgtcagcctgggtgtccactctgttttgcgcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagtctctttttccacacttaatgatatgatagggttcaagttggaag Alignment from Pairagon GTAGGAAGAAGTGGTA-TACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG atatcctaagtatgacctgtcagcctgggtgtccactctgttttgcgcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagtctctttttccacacttaatgatatgatagggttcaagttggaag Alignment from Exonerate_protein2genome GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG atatcctaagtatgacctgtcagcctgggtgtccactctgttttgcgcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagtctctttttccacacttaatgatatgatagggttcaagttggaag Alignment from Exonerate_coding2genome GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG atatcctaagtatgacctgtcagcctgggtgtccactctgttttgcgcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagtctctttttccacacttaatgatatgatagggttcaagttggaag Alignment from GeneWise GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG atatcctaagtatgacctgtcagcctgggtgtccactctgttttgcgcaggtagGTA---GAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaagtctctttttccacacttaatgatatgatagggttcaagttggaag #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGC-TACAAGAGGCTCAACAGCACCCACTGCCAGg tactgtgcccaccctcttttgtcactgttttccttttctgctgcccccagatACAGGAGTGCAAAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCCTATAAAAGACTTAATAGCACCCATTCTCAGggtgtgaatcaccaaagattccattaattgttagatagatatgtgaggtag Alignment from CESAR atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGC-TACAAGAGGCTCAACAGCACCCACTGCCAGg tactgtgcccaccctcttttgtcactgttttccttttctgctgcccccagatACAGGAGTGCAAAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCCTATAAAAGACTTAATAGCACCCATTCTCAGggtgtgaatcaccaaagattccattaattgttagatagatatgtgaggtag Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGC-TACAAGAGGCTCAACAGCACCCACTGCCAGG tactgtgcccaccctcttttgtcactgttttccttttctgctgcccccagATACAGGAGTGCAAAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCcTATAAAAGACTTAATAGCACCCATTCTCAGGgtgtgaatcaccaaagattccattaattgttagatagatatgtgaggtag Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGC-TACAAGAGGCTCAACAGCACCCACTGCCAGG tactgtgcccaccctcttttgtcactgttttccttttctgctgcccccagATACAGGAGTGCAAAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCCTATAAAAGACTTAATAGCACCCATTCTCAGGgtgtgaatcaccaaagattccattaattgttagatagatatgtgaggtag Alignment from Pairagon ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGG-CTACAAGAGGCTCAACAGCACCCACTGCCAGG tactgtgcccaccctcttttgtcactgttttccttttctgctgcccccagATACAGGAGTGCAAAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCCTATAAAAGACTTAATAGCACCCATTCTCAGGgtgtgaatcaccaaagattccattaattgttagatagatatgtgaggtag Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGC-TACAAGAGGCTCAACAGCACCCACTGCCAGG tactgtgcccaccctcttttgtcactgttttccttttctgctgcccccagATACAGGAGTGCAAAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCCTATAAAAGACTTAATAGCACCCATTCTCAGGgtgtgaatcaccaaagattccattaattgttagatagatatgtgaggtag Alignment from Exonerate_coding2genome tactgtgcccaccctcttttgtcactgttttccttttctgctgcccccagatacaggagtgcaaaagcctggacctgtacgaggggaggtgggcgctgactgccccaagggcctataaaagacttaatagcacccattctcagggtgtgaatcaccaaagattccattaattgttagatagatatgtgaggtag Alignment from GeneWise ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAG-GGCTACAAGAGGCTCAACAGCACCCACTGCCAGG tactgtgcccaccctcttttgtcactgttttccttttctgctgcccccagATACAGGAGTGCAAAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCCTATAAAAGACTTAATAGCACCCATTCTCAGGgtgtgaatcaccaaagattccattaattgttagatagatatgtgaggtag #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGC-CCGGCAGATGGTACAg gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagccGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCCAGCAGATGGCACGggtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGC-CCGGCAGATGGTACAg gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagccGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCCAGCAGATGGCACGggtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCG-GCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCCaGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCG-GCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTG-CCCGGCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGC-CCGGCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from Exonerate_coding2genome gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagccgacaaaccaaaggagaaaagcttgtgtttccgccttgtgagcactgaacaccagtgccagcaccctttaactacacgtttaacccatcagctttgctgttgtagtgttggtaaggcttggggggcccggtgccagcgttgccccagcagatggcacgggtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCG-GCAGATGGTACAG gcaccagtaaggttgccactccacactgaccctctacctgatcctatcagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTAACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGCCCCAGCAGATGGCACGGgtaaatttgtagagccttgggaatgacagaatgaatatgtgtgctaggcc #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTCGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGggtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from CESAR CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTCGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGggtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTcGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTCGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Pairagon CCAGTGAGTGAGGAGCGATC-GGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTCGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagCCAGTGAGTGAGGAGCGATCTCGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from Exonerate_coding2genome tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagccagtgagtgaggagcgatctcgtgcaacagagccatcccactaccattacctcaccttctcggcctttcctgggtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta Alignment from GeneWise tatgacagctcaaactaccattatgaggttctatcctcaattccctgcagccagtgagtgaggagcgatctcgtgcaacagagccatcccactaccattacctcaccttctcggcctttcctgggtatggtggttggaggggatgggcaaatcataccaacaggggtaagccta #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAA-AACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcgccatacttgtatcagaccatcctaacaccaccccatgtgctccagatATTGATGAATGTCATGACCCCAGCACCTGCCCTGATGGGAAGTGTGAACAATAAACTTGGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGGGGTGGGACATGCCATggtaaaacaaatccagtctcccccatagggttagtagggcccccatggatg Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAA-AACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcgccatacttgtatcagaccatcctaacaccaccccatgtgctccagatATTGATGAATGTCATGACCCCAGCACCTGCCCTGATGGGAAGTGTGAACAATAAACTTGGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGGGGTGGGACATGCCATggtaaaacaaatccagtctcccccatagggttagtagggcccccatggatg Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAA-AACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcgccatacttgtatcagaccatcctaacaccaccccatgtgctccagATATTGATGAATGTCATGACCCCAGCACCTGCCCTGATGGGAAGTGTGAAcAATAAACTTGGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGGGGTGGGACATGCCATGgtaaaacaaatccagtctcccccatagggttagtagggcccccatggatg Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAA-AACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcgccatacttgtatcagaccatcctaacaccaccccatgtgctccagATATTGATGAATGTCATGACCCCAGCACCTGCCCTGATGGGAAGTGTGAACAATAAACTTGGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGGGGTGGGACATGCCATGgtaaaacaaatccagtctcccccatagggttagtagggcccccatggatg Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAA-AACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcgccatacttgtatcagaccatcctaacaccaccccatgtgctccagATATTGATGAATGTCATGACCCCAGCACCTGCCCTGATGGGAAGTGTGAACAATAAACTTGGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGGGGTGGGACATGCCATGgtaaaacaaatccagtctcccccatagggttagtagggcccccatggatg Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAA-AACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcgccatacttgtatcagaccatcctaacaccaccccatgtgctccagATATTGATGAATGTCATGACCCCAGCACCTGCCCTGATGGGAAGTGTGAACAATAAACTTGGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGGGGTGGGACATGCCATGgtaaaacaaatccagtctcccccatagggttagtagggcccccatggatg Alignment from Exonerate_coding2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAA-AACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcgccatacttgtatcagaccatcctaacaccaccccatgtgctccagATATTGATGAATGTCATGACCCCAGCACCTGCCCTGATGGGAAGTGTGAACAATAAACTTGGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGGGGTGGGACATGCCATGgtaaaacaaatccagtctcccccatagggttagtagggcccccatggatg Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGT-GAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcgccatacttgtatcagaccatcctaacaccaccccatgtgctccagATATTGATGAATGTCATGACCCCAGCACCTGCCCTGATGGGAAGTGTGAACAATAAACTTGGTAGCTTCAGGTGCATTGCTTGCCAGCCTGGTTACCGAAGCCAGGGGGGTGGGACATGCCATGgtaaaacaaatccagtctcccccatagggttagtagggcccccatggatg #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGCTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTggtgagcatttttgaaggtttttttgtctgtcttattcagggTCCCAGTGC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGCTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTggtgagcatttttgaaggcggtttctctcttaacttacagggTCCCAGTGC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGcTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggtttttttgtctgtcttattcagGGTCCCAGTGC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGCTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggtttttttgtctgtcttattcagGGTCCCAGTGC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGCTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggtttttttgtctgtcttattcagGGTCCCAGTGC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGCTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggtttttttgtctgtcttattcagGGTCCCAGTGC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCGGG ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGCTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGGTgagcatttttgaaggtttttttgtctgtcttattcagggtcccagtgc Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGC-ATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCCAGTGC ttagcagcatattgctctggtctctctagtgttccccccccccaccccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGCTGTATGGGGCCCCTAGTGGGACCCGCCCTCACTTTTGATGACTGTTGTTGCCGTCAAGGTCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtgagcatttttgaaggtttttttgtctgtcttattcagGGTCCCAGTGC #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTg aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCCATCTCCACAGGGGTGATTagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from CESAR GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTg aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCCATCTCCACAGGGGTGATTagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Spaln_aa2Genome -GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCCATCTCCACAGGGGTGATTAgcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Spaln_nt2Genome GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTG aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCCATCTCCACAGGGGTGATTAgcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Pairagon GCTTTCCCGTG-CATCTCCACAGGCGTGTTTG aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCCATCTCCACAGGGGTGATTAgcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Exonerate_protein2genome aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagacctttccatgccatctccacaggggtgattagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Exonerate_coding2genome aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagacctttccatgccatctccacaggggtgattagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from GeneWise --- aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagacctttccatgccatctccacaggggtgattagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagAAT #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTG-CGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacaggcTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGAATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTG-CGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacaggcTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGAATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTG-CGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGcCGGGAATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGC-GGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGAATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTG-CGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGAATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTG-CGGGAATGGCTGGAGCAGCACAAGGACAAG aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacagGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGAATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from Exonerate_coding2genome aatggggtggggtccaatatgcatttacaaatctagcttcaccttaacaggctaccccaatgaggaggctgcagaggtagtgctggtttcattgccgggaatggttggagcaacacaaggacaaggtagagccaaattcatattacatgatgggagcctggttgctatgaattga Alignment from GeneWise CATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCG-CTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gtggggtccaatatgcatttacaaatctagCTTCACC------TTAACAGGCTACCCCAATGAGGAGGCTGCAGAGGTAGTGCTGGTTTCATTGCCGGGAATGGTTGGAGCAACACAAGGACAAGgtagagccaaattcatattacatgatgggagcctggttgctatgaattga #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGAC-GAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg ttcacctgttatgttccaagtttaagttgagctttactttctcttcgtagGTGGATCGGCTCATTATCTGTGTCTTCTTGGAGAAAGAACGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtaagtacaaattgctcatatgctcgaaggcaccctcaatttgctctctg Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGAC-GAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg ttcacctgttatgttccaagtttaagttgagctttactttctcttcgtagGTGGATCGGCTCATTATCTGTGTCTTCTTGGAGAAAGAACGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtaagtacaaattgctcatatgctcgaaggcacccacttgagctcttctg Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGC-ATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG ttcacctgttatgttccaagtttaagttgagctttactttctcttcgtagGTGGATCGGCTCATTATCTGTGTCTTCTTGGAGAAAGAACGAGGGcATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGgtaagtacaaattgctcatatgctcgaaggcaccctcaatttgctctctg Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGA-CGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgttatgttccaagtttaagttgagctttactttctcttcgtagGTGGATCGGCTCATTATCTGTGTCTTCTTGGAGAAAGAACGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGGTaagtacaaattgctcatatgctcgaaggcaccctcaatttgctctctg Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAG-AAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG ttcacctgttatgttccaagtttaagttgagctttactttctcttcgtagGTGGATCGGCTCATTATCTGTGTCTTCTTGGAGAAAGAACGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGgtaagtacaaattgctcatatgctcgaaggcaccctcaatttgctctctg Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGAC-GAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA ttcacctgttatgttccaagtttaagttgagctttactttctcttcgtagGTGGATCGGCTCATTATCTGTGTCTTCTTGGAGAAAGAACGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtaagtacaaattgctcatatgctcgaaggcaccctcaatttgctctctg Alignment from Exonerate_coding2genome ttcacctgttatgttccaagtttaagttgagctttactttctcttcgtaggtggatcggctcattatctgtgtcttcttggagaaagaacgagggcatttacagggaacatcttccccattatttcccagtaggtaagtacaaattgctcatatgctcgaaggcaccctcaatttgctctctg Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAG-GACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgttatgttccaagtttaagttgagctttactttctcttcgtagGTGGATCGGCTCATTATCTGTGTCTTCTTGGAGAAAGAACGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGGTaagtacaaattgctcatatgctcgaaggcaccctcaatttgctctctg #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tgcaggcccctggtgcgaatgtctcgagctctttatttgctcttccccagatTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCCATTCCATGCAGGAAGGCTGGAGATGTGAGATAGAGGGTTTGTTTGACGATCTGCGGGCCAAGGAAAAGgtaaattgcatctgcctatgggacatagaaagtaatacgtaatgtggtgg Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tgcaggcccctggtgcgaatgtctcgagctctttatttgctcttccccagatTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCCATTCCATGCAGGAAGGCTGGAGATGTGAGATAGAGGGTTTGTTTGACGATCTGCGGGCCAAGGAAAAGgtaaattgcatctgcctatgggacatagaaagtaatacgtaatgtggtgg Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tgcaggcccctggtgcgaatgtctcgagctctttatttgctcttccccagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCcCATTCCATGCAGGAAGGCTGGAGATGTGAGATAGAGGGTTTGTTTGACGATCTGCGGGCCAAGGAAAAGgtaaattgcatctgcctatgggacatagaaagtaatacgtaatgtggtgg Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tgcaggcccctggtgcgaatgtctcgagctctttatttgctcttccccagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCCATTCCATGCAGGAAGGCTGGAGATGTGAGATAGAGGGTTTGTTTGACGATCTGCGGGCCAAGGAAAAGgtaaattgcatctgcctatgggacatagaaagtaatacgtaatgtggtgg Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTT-CCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tgcaggcccctggtgcgaatgtctcgagctctttatttgctcttccccagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCCATTCCATGCAGGAAGGCTGGAGATGTGAGATAGAGGGTTTGTTTGACGATCTGCGGGCCAAGGAAAAGgtaaattgcatctgcctatgggacatagaaagtaatacgtaatgtggtgg Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tgcaggcccctggtgcgaatgtctcgagctctttatttgctcttccccagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCCATTCCATGCAGGAAGGCTGGAGATGTGAGATAGAGGGTTTGTTTGACGATCTGCGGGCCAAGGAAAAGgtaaattgcatctgcctatgggacatagaaagtaatacgtaatgtggtgg Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tgcaggcccctggtgcgaatgtctcgagctctttatttgctcttccccagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCCATTCCATGCAGGAAGGCTGGAGATGTGAGATAGAGGGTTTGTTTGACGATCTGCGGGCCAAGGAAAAGgtaaattgcatctgcctatgggacatagaaagtaatacgtaatgtggtgg Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCC-TTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tgcaggcccctggtgcgaatgtctcgagctctttatttgctcttccccagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCTTTATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCCATTCCATGCAGGAAGGCTGGAGATGTGAGATAGAGGGTTTGTTTGACGATCTGCGGGCCAAGGAAAAGgtaaattgcatctgcctatgggacatagaaagtaatacgtaatgtggtgg #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGA-GCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg tctacattagtgaactgatagccatattattaatacacgttccatttcagGAACTCCTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGCGTGCAGTGGTCTCAGGCAGAGCAGCTCCAGCTGCGGCGGCATGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACATCGACGGCGGGGCACCTCCAAGTTGAGTAAACTCCGACGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGggtaagagctgggacttcaattatgtctgcaatttgctagtggtgctgctg Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGA-GCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg tctacattagtgaactgatagccatattattaatacacgttccatttcagGAACTCCTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGCGTGCAGTGGTCTCAGGCAGAGCAGCTCCAGCTGCGGCGGCATGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACATCGACGGCGGGGCACCTCCAAGTTGAGTAAACTCCGACGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGggtaagagctgggacttcaattatgtctgcaatttgctagtggtgctgctg Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAG------CAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGA-GCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacattagtgaactgatagccatattattaatacacgttccatttcagGAACTCCTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGCGTGCAGTGGTCTCAGGCAGAGCAGCTCCAGCTGCGGCGGCATGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACATCGACGGCGGGGCACCTCCAAGTTGAGTAAACTCCGAcGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtaagagctgggacttcaattatgtctgcaatttgctagtggtgctgctg Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCT------GCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGA-GCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacattagtgaactgatagccatattattaatacacgttccatttcagGAACTCCTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGCGTGCAGTGGTCTCAGGCAGAGCAGCTCCAGCTGCGGCGGCATGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACATCGACGGCGGGGCACCTCCAAGTTGAGTAAACTCCGACGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtaagagctgggacttcaattatgtctgcaatttgctagtggtgctgctg Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAG------CAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGA-GCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacattagtgaactgatagccatattattaatacacgttccatttcagGAACTCCTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGCGTGCAGTGGTCTCAGGCAGAGCAGCTCCAGCTGCGGCGGCATGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACATCGACGGCGGGGCACCTCCAAGTTGAGTAAACTCCGACGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtaagagctgggacttcaattatgtctgcaatttgctagtggtgctgctg Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAG------CAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGA-GCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacattagtgaactgatagccatattattaatacacgttccatttcagGAACTCCTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGCGTGCAGTGGTCTCAGGCAGAGCAGCTCCAGCTGCGGCGGCATGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACATCGACGGCGGGGCACCTCCAAGTTGAGTAAACTCCGACGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtaagagctgggacttcaattatgtctgcaatttgctagtggtgctgctg Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAG------CAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGA-GCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacattagtgaactgatagccatattattaatacacgttccatttcagGAACTCCTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGCGTGCAGTGGTCTCAGGCAGAGCAGCTCCAGCTGCGGCGGCATGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACATCGACGGCGGGGCACCTCCAAGTTGAGTAAACTCCGACGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtaagagctgggacttcaattatgtctgcaatttgctagtggtgctgctg Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTG------CGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGA-GCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacattagtgaactgatagccatattattaatacacgttccatttcagGAACTCCTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGCGTGCAGTGGTCTCAGGCAGAGCAGCTCCAGCTGCGGCGGCATGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTACTACTCCAGCAGGTGGATCGAGAACAGGCACATGTACATCGACGGCGGGGCACCTCCAAGTTGAGTAAACTCCGACGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtaagagctgggacttcaattatgtctgcaatttgctagtggtgctgctg #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCC-TACATCGGCAGCTACCTCag tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACATCAGTAGCTACCTCaggtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCC-TACATCGGCAGCTACCTCag tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACATCAGTAGCTACCTCaggtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCC-TACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCcTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCC-TACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGG-CCTACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Exonerate_protein2genome tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccaggggatgacatcagctctcttcagcaggaaatcaccatccttcgtgaatgccgccaccccaatgttgtggccctacatcagtagctacctcaggtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from Exonerate_coding2genome tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccaggggatgacatcagctctcttcagcaggaaatcaccatccttcgtgaatgccgccaccccaatgttgtggccctacatcagtagctacctcaggtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTG-GCCTACATCGGCAGCTACCTCAG tatcattcaggaacggaacaatgcattgtcctaaaaccgttgattcccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCCTACATCAGTAGCTACCTCAGgtaacactgttcacacctacacactcaggtgcgatactcttaggtgttca #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCA-CTGCAGGAGATTTACCACg gcgatactcttaggtgttcattgcactatctgttttctgtcttttttcaggAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACCTACAGGAAGTTTACCATggtgtgtaccaaactccatggacctgtcattctgtgattactataacaagt Alignment from CESAR gAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCA-CTGCAGGAGATTTACCACg gcgatactcttaggtgttcattgcactatctgttttctgtcttttttcaggAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACCTACAGGAAGTTTACCATggtgtgtaccaaactccatggacctgtcattctgtgattactataacaagt Alignment from Spaln_aa2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCA-CTGCAGGAGATTTACCACG gcgatactcttaggtgttcattgcactatctgttttctgtcttttttcagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCAcCTACAGGAAGTTTACCATGgtgtgtaccaaactccatggacctgtcattctgtgattactataacaagt Alignment from Spaln_nt2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCAC-TGCAGGAGATTTACCACG gcgatactcttaggtgttcattgcactatctgttttctgtcttttttcagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACCTACAGGAAGTTTACCATGgtgtgtaccaaactccatggacctgtcattctgtgattactataacaagt Alignment from Pairagon GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCA-CTGCAGGAGATTTACCACG gcgatactcttaggtgttcattgcactatctgttttctgtcttttttcagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACCTACAGGAAGTTTACCATGgtgtgtaccaaactccatggacctgtcattctgtgattactataacaagt Alignment from Exonerate_protein2genome gcgatactcttaggtgttcattgcactatctgttttctgtcttttttcaggaatgaccgattgtggatctgtatggagttctgtgggggagcgtcacctacaggaagtttaccatggtgtgtaccaaactccatggacctgtcattctgtgattactataacaagt Alignment from Exonerate_coding2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCA-CTGCAGGAGATTTACCACG gcgatactcttaggtgttcattgcactatctgttttctgtcttttttcagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACCTACAGGAAGTTTACCATGgtgtgtaccaaactccatggacctgtcattctgtgattactataacaagt Alignment from GeneWise GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGG-TCACTGCAGGAGATTTACCACG gcgatactcttaggtgttcattgcactatctgttttctgtcttttttcagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACCTACAGGAAGTTTACCATGgtgtgtaccaaactccatggacctgtcattctgtgattactataacaagt #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCAC-CTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG------ GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGGTAGGAgtgagtcatctttgtttacctttcttagGGTGCAAACCTTCTGCTCACAT Alignment from CESAR GGGCTCCACCAC-CTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggagtggagccgatgtcaccttctgctgcagGGTGCAAACCTTCTGCTCACAT Alignment from Spaln_aa2Genome GGGCTCCACCAC-CTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACcCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggagtgagtcatctttgtttacctttcttagGGTGCAAACCTTCTGCTCACAT Alignment from Spaln_nt2Genome GGGCTCCACCACC-TGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggagtgagtcatctttgtttacctttcttagGGTGCAAACCTTCTGCTCACAT Alignment from Pairagon GGGCTCCACCA-CCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggagtgagtcatctttgtttacctttcttagGGTGCAAACCTTCTGCTCACAT Alignment from Exonerate_protein2genome GGGCTCCACCAC-CTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG GGTGCCAACCTTCTGCTCACTC agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagGGCCTCCATCACCCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggagtgagtcatctttgtttacctttcttagGGTGCAAACCTTCTGCTCACAT Alignment from Exonerate_coding2genome agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagggcctccatcaccctgcgttctaagggaaaaattcacagagacattaaggtaggagtgagtcatctttgtttacctttcttagggtgcaaaccttctgctcacat Alignment from GeneWise agttaggcccgcaattccatgtgcctttccttgcctcttgaccgcctcagggcctccatcaccctgcgttctaagggaaaaattcacagagacattaaggtaggagtgagtcatctttgtttacctttcttagggtgcaaaccttctgctcacat #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCA-TCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagctGATTTTGGGGTCACGGATGGAGCTACAACACTCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACtggtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from CESAR cgGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagctGATTTTGGGGTCACGGATGGAGCTACAACACTCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACtggtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagCTGATTTTGGGGTCACGGATgGAGCTACAACACTCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCG-AGCTGACAGCA-TCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagCTGATTTTGGGGTCACGGATGGAGCT-ACAACACTCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGCA------------------TCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagCTGATTTTGGGGT-----------------CACGGATGGAGCTACAACACTCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagCTGATTTTGGGGTCACGGATGGAGCTACAACACTCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Exonerate_coding2genome tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagctgattttggggtcacggatggagctacaacactctgttgctaagaggcactctctcataggcagtccatactggtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from GeneWise --AACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGGCGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccagGCATGTTTATTTTCACTTTGCAG---------------CTGATTTTGGGGTCACGGATGGAGCTACAACACTCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGag gagcatattgagaggatcaccagatctacacctggaacttttgaatgcaggATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCCACCTGCACCCCATGaggtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacaat Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGag gagcatattgagaggatcaccagatctacacctggaacttttgaatgcaggATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCCACCTGCACCCCATGaggtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacttt Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGAG gagcatattgagaggatcaccagatctacacctggaacttttgaatgcagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCcCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacaat Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCC-ACCTGCACCCCATGAG gagcatattgagaggatcaccagatctacacctggaacttttgaatgcagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacaat Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTG----------------------------TTCCACCTGCACCCCATGAG gagcatattgagaggatcaccagatctacacctggaacttttgaatgcagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACT---------------------------CCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacaat Alignment from Exonerate_protein2genome gagcatattgagaggatcaccagatctacacctggaacttttgaatgcaggatggccccagaagttgctgctgtggagcgtaagggtggctacaatgagctatgtgacatatgggcattaggtattactccagtggaatcaagtgaactccaacatccgttactcccacctgcaccccatgaggtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacaat Alignment from Exonerate_coding2genome CTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTGGATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGC--TGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGAG GAGCATATTGAGAGGATCACCAGATCTACACCTGGAACTTTTGAATGCAGGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGT--GACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacaat Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTG-TTCCACCTGCACCCCATGAG gagcatattgagaggatcaccagatctacacctggaacttttgaatgcagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacaat #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTgg ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGCACGCTCCTGGGAAAAGAGGAACTAAGTgggtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from CESAR TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTgg ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGCACGCTCCTGGGAAAAGAGGAACTAAGTgggtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGcACGCTCCTGGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGCACGCTCCTGGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Pairagon TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGCACGCTCCTGGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGCACGCTCCTGGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTGG ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagTGGGAAGAGGAGTGGCACGCTCCTGGGAAAAGAGGAACTAAGTGGgtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg Alignment from GeneWise ctttccattgtgtgtttacttctcttaaatgtacgtacgcttgtttttagtgggaagaggagtggcacgctcctgggaaaagaggaactaagtgggtgagtgagagtggttgggaaagtaggggtgcaaacggaccctgttgatg #### Map4k2_ID1637_16 --> 1 - 2 Original Alignment gAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAag gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacaggAGCCTGTTGCAGTCAGTGCAGCGAAGCTCTGGAGGATaagtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from CESAR gAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAag gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacaggAGCCTGTTGCAGTCAGTGCAGCGAAGCTCTGGAGGATaagtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Spaln_aa2Genome GAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAAG gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacagGAGCCTGTTGCAGTCAGTGCAGcGAAGCTCTGGAGGATAAgtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Spaln_nt2Genome GAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAAG gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacagGAGCCTGTTGCAGTCAGTGCAGCGAAGCTCTGGAGGATAAgtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Pairagon GAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAAG gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacagGAGCCTGTTGCAGTCAGTGCAGCGAAGCTCTGGAGGATAAgtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Exonerate_protein2genome GAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAAG gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacagGAGCCTGTTGCAGTCAGTGCAGCGAAGCTCTGGAGGATAAgtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from Exonerate_coding2genome gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacaggagcctgttgcagtcagtgcagcgaagctctggaggataagtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag Alignment from GeneWise gcaaacggaccctgttgatgcttgggaccactcacacaccttctctacaggagcctgttgcagtcagtgcagcgaagctctggaggataagtaatactttatcccttgaccaaaggctgggaagtgccacaccccagaag #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaacattttatggggccgggagtgacttactttcaactatagGAACTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCAGGCGCCATTCCTGGGCCTCCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAggtgagatcagggaatggtaagccacatggtatgttgcggacatgccaggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCC-CACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaacattttatggggccgggagtgacttactttcaactatagGAACTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCAGGCGCCATTCCTGGGCCTCCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAggtgagatcagggaatggtaagccacatggtatgttgcggacatgccaggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaacattttatggggccgggagtgacttactttcaactatagGAACTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCAGGCGCCATTCCTGGGCCTCcCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAGgtgagatcagggaatggtaagccacatggtatgttgcggacatgccaggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCC-ACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaacattttatggggccgggagtgacttactttcaactatagGAACTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCAGGCGCCATTCCTGGGCCTCCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---TCCAGgtgagatcagggaatggtaagccacatggtatgttgcggacatgccaggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCT-GCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaacattttatggggccgggagtgacttactttcaactatagGAACTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCAGGCGCCATTCCTGGGCCTCCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---TCCAGgtgagatcagggaatggtaagccacatggtatgttgcggacatgccaggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCC ctacagaacaacattttatggggccgggagtgacttactttcaactatagGAACTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCAGGCGCCATTCCTGGGCCTCCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGTCCAGgtgagatcagggaatggtaagccacatggtatgttgcggacatgccaggg Alignment from Exonerate_coding2genome ctacagaacaacattttatggggccgggagtgacttactttcaactataggaacttgattccccagatgatgccattggaactattaagcaggcgccattcctgggcctccccccacactgagtcaacatctggtgataatgcccagtcctgtccaggtgagatcagggaatggtaagccacatggtatgttgcggacatgccaggg Alignment from GeneWise GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGG-CTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaacattttatggggccgggagtgacttactttcaactatagGAACTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCAGGCGCCATTCCTGGGCCTCCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGT---CCAGgtgagatcagggaatggtaagccacatggtatgttgcggacatgccaggg #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAA-CAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacaggcACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctactctttctgttc Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAA-CAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacaggcACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctactttgttctgtc Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAA-CAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGcCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctactctttctgttc Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAAC-AGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctactctttctgttc Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAA-CAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctactctttctgttc Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAA-CAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctactctttctgttc Alignment from Exonerate_coding2genome gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacaggcaccttgtcagcccccccagctcctgatagccatgccctgctaccaactgcttgggctaccctaaagcagccaagaggaccgtgaggtaaggcagataactggatggtaagggtgggaatcctactctttctgttc Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAA-CAGGAGGATCGTGAG gttgcggacatgccaggggctggcaccatagcccttgtcctaccctacagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCCAAGAGGACCGTGAGgtaaggcagataactggatggtaagggtgggaatcctactctttctgttc #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCATGGGCTTCCTCCC-ACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggtttcttttaaaaatcttg Alignment from CESAR CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggtctttctgtcaccctggg Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTcCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggtttcttttaaaaatcttg Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGCTTCCTCCC-ACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggtttcttttaaaaatcttg Alignment from Pairagon CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGT------------------------------------------------------ taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCCACCCCGAAGGTCCCTGTGAGGGGTGCCATGATGTCCTAGCCAACTGGTTTCTTTTAAAAATCTTG Alignment from Exonerate_protein2genome GCCATGGGCT TCCTCCCACCCCCAAGGT TAACTGGATGgtaagggtgggaatcctactttgttctgtcttctctacagcggtcatcctgttatggtcttcctccccaccccgaaggtccctgtgaggggtgccatgatgtcctagccaactggTTTCTTTTAAAAATCTTG Alignment from Exonerate_coding2genome taactggatggtaagggtgggaatcctactttgttctgtcttctctacagcggtcatcctgttatggtcttcctccccaccccgaaggtccctgtgaggggtgccatgatgtcctagccaactggtttcttttaaaaatcttg Alignment from GeneWise CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAG---------------GTGCACATG taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCCACCCCGAAGGTCCCTGTGAGGGGTGCCATGATgtcctagccaactggtttcttttaaaaatcttg #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTC-TCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg gtggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCCACCAAGGTCTCTAATGGCTGTCCTCTGCAGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAggtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from CESAR ATGGGTGCCTGCTTC-TCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg ggggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCCACCAAGGTCTCTAATGGCTGTCCTCTGCAGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAggtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTC-TCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gtggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCcACCAAGGTCTCTAATGGCTGTCCTCTGCAGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCT-CCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gtggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCCACCAAGGTCTCTAATGGCTGTCCTCTGCAGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Pairagon ------------------------------------------------ACATGGGTGCCTGCTTCT-CCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG GTGGTGCCATGATGTCCTAGCCAACTGGTCTTTCTGTCACCCTGGGCTAGATGGGTGCTTGCTTCCACCAAGGTCTCTAATGGCTGTCCTCTGCAGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTC-TCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gtggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCCACCAAGGTCTCTAATGGCTGTCCTCTGCAGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTC-TCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gtggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCCACCAAGGTCTCTAATGGCTGTCCTCTGCAGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag Alignment from GeneWise ATGGGTGCCTGCTTC-TCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG gtggtgccatgatgtcctagccaactggtctttctgtcaccctgggctagATGGGTGCTTGCTTCCACCAAGGTCTCTAATGGCTGTCCTCTGCAGATTCATGCTGCCGTTACTTGGGTTCACCCTGTGACACGAGgtaggggtaggtagactagaagggataacttaggaacccatgaccctgag #### Map4k2_ID1652_31 --> 0 - 2 Original Alignment GTGACGCAGGAGATAACAGATGAGACCAGGATC-TTCCGAGTACTGGGGGCTCACag gcttcctgaggacctacactgagaaggatgccaccatctcctctccacagGTGACACAGGAGATAACAGATGATGCTAGGATACTTCCGAGTACTTGGAGCCCATaggtagacacaaaacagacctccttgatttttcaggttgtggggacttgcct Alignment from CESAR GTGACGCAGGAGATAACAGATGAGACCAGGATC-TTCCGAGTACTGGGGGCTCACag gcttcctgaggacctacactgagaaggatgccaccatctcctctccacagGTGACACAGGAGATAACAGATGATGCTAGGATACTTCCGAGTACTTGGAGCCCATaggtagacacaaaacagacctccttgatttttcaggttgtggggtttttttt Alignment from Spaln_aa2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATC-TTCCGAGTACTGGGGGCTCACAG gcttcctgaggacctacactgagaaggatgccaccatctcctctccacagGTGACACAGGAGATAACAGATGATGCTAGGATAcTTCCGAGTACTTGGAGCCCATAGgtagacacaaaacagacctccttgatttttcaggttgtggggacttgcct Alignment from Spaln_nt2Genome GTGACGCAGGAGATAACAGATGAGACCAGGAT-CTTCCGAGTACTGGGGGCTCACAG gcttcctgaggacctacactgagaaggatgccaccatctcctctccacagGTGACACAGGAGATAACAGATGATGCTAGGATACTTCCGAGTACTTGGAGCCCATAGgtagacacaaaacagacctccttgatttttcaggttgtggggacttgcct Alignment from Pairagon GTGACGCAGGAGATAACAGATGAGACCAGGAT-CTTCCGAGTACTGGGGGCTCACAG gcttcctgaggacctacactgagaaggatgccaccatctcctctccacagGTGACACAGGAGATAACAGATGATGCTAGGATACTTCCGAGTACTTGGAGCCCATAGgtagacacaaaacagacctccttgatttttcaggttgtggggacttgcct Alignment from Exonerate_protein2genome GTGACGCAGGAGATAACAGATGAGACCAGGATC-TTCCGAGTACTGGGGGCTCACAG gcttcctgaggacctacactgagaaggatgccaccatctcctctccacagGTGACACAGGAGATAACAGATGATGCTAGGATACTTCCGAGTACTTGGAGCCCATAGgtagacacaaaacagacctccttgatttttcaggttgtggggacttgcct Alignment from Exonerate_coding2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTA gcttcctgaggacctacactgagaaggatgccaccatctcctctccacaggtgacacaggagataacagatgatgctaggatacttccgagtacttggagcccataggtagacacAAAACAGACCTCCTTGATTTTTCAGGTTGTGGGGACTTGCCT Alignment from GeneWise ---GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTA------------ gcttcctgaggacctacactgagaaggatgccaccatctcctctccacaggtgacacaggagataacagatgatgctaggatacttccgagtacttggagCCCATAGGTAGACACAAAACAGACCTCCTTGATTTTTCAGGTTGTGGGGACTTGCCT #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCA-GTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCACGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCA-GTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCACGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCA-GTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAcGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCA-GTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCACGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCA-GTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCACGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCA-GTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCACGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCA-GTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCACGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCC-GCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cctttctaacccttcactctgtgtgtttgctgctgccatttctattccagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCACGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaggtctgcagggatagctatacatctatggcaccatgttgcacacctg #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCC-AGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCC-AGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCC-AGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCcAGTCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGC-CAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGG-CCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCC-AGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCC-AGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCC-AGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG ggctaagtgcactacattagaggcaatactgttctcttgttttcccacagAATGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCCAGTCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagttaatcgagtctggttcctttcctcagaagcttgcagtgttttat #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTA-AAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTACAAGCTTTATGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAggtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from CESAR CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTA-AAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTACAAGCTTTATGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAggtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Spaln_aa2Genome CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTA-AAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAcAAGCTTTATGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Spaln_nt2Genome TT-ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAA-AGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagcaaattatgaaagatcagTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTACAAGCTTTATGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Pairagon CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTA-AAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTACAAGCTTTATGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Exonerate_protein2genome AGCAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTA-AAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagcaaattatgaaagATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTACAAGCTTTATGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from Exonerate_coding2genome CAAATTATGAAA---------------GATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTA-AAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTACAAGCTTTATGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt Alignment from GeneWise ---------------CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAG-CCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG ctcttaaatacctgcatcttgtaccctgttttcattttacaatcctgtagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTACAAGCTTTATGTGGAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtaatactgtggtgctgcaggtctgagataaggccacattgggagtcagt #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGGGTACTG-AGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGCAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from CESAR GAGCTGCGGGAACGGGTACTG-AGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGCAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTACTG-AGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGCAA ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGcAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATGTAgcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTACTG-AGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGCAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Pairagon GAGCTGCGGGAACGGGTACTG-AGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGCAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTG-AGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGCAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGatgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTG-AGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGCAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGatgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from GeneWise GAGCTGCGGGAACGGGTA-CTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGCAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTcCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGTC-ACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGAC-CGGCAGATTGATCAGTTTCTCGTGGTGGCCcg cacacttctattagtacattatggctgactctgtgctttttgtcttacaggaGAGTCAGATAATAGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAATCCCCTCACAGACCCAGCAGATTGACCAGTTCCTAGTTGTGGCTcggtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGAC-CGGCAGATTGATCAGTTTCTCGTGGTGGCCcg cacacttctattagtacattatggctgactctgtgctttttgtcttacaggaGAGTCAGATAATAGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAATCCCCTCACAGACCCAGCAGATTGACCAGTTCCTAGTTGTGGCTcggtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGAC-CGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAATCCCCTCACAGACcCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCG-GCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAATCCCCTCACAGACCCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGA-CCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAATCCCCTCACAGACCCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGAC-CGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAATCCCCTCACAGACCCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from Exonerate_coding2genome cacacttctattagtacattatggctgactctgtgctttttgtcttacaggagagtcagataatagaaaccaacagaagatggagatgaaagtctgggacccaggcaatcccctcacagacccagcagattgaccagttcctagttgtggctcggtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGAC-CGGCAGATTGATCAGTTTCTCGTGGTGGCCCG cacacttctattagtacattatggctgactctgtgctttttgtcttacagGAGAGTCAGATAATAGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAATCCCCTCACAGACCCAGCAGATTGACCAGTTCCTAGTTGTGGCTCGgtactgaaatgttcagggaggtcacataggtgcactaaaccttgcattgg #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATG-AGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttccaatatgaagaaccatgagtctttttgttccttcagtGCCGTGAGCACTTTTGTAAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGAAGTCCAGCTTGCATATGCAGTGCA------GCTACCACAGATATTATCACTCTGgtgagtaccaagtcacaaatatttttgtatgataagccaagagtggagtg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATG-AGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttccaatatgaagaaccatgagtctttttgttccttcagtGCCGTGAGCACTTTTGTAAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGAAGTCCAGCTTGCATATGCAGTGCAGCTACCACA------GATATTATCACTCTGgtgagtaccaagtcacaaatatttttgtatgataagccaagagtggagtg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaatatgaagaaccatgagtctttttgttccttcagTGCCGTGAGCACTTTTGTAAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGAAGTCCAGCTTGCATATGC--AGTGCAGCTACCACAGATATTATCACTCTGgtgagtaccaagtcacaaatatttttgtatgataagccaagagtggagtg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATG-AGTGCAGCTGCTGCGTCCCGAGAT-ATCACTCTG gctaatgtggcttccaatatgaagaaccatgagtctttttgttccttcagTGCCGTGAGCACTTTTGTAAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGAAGTCCAGCTTGCATATGCAGTGCAGCTAC----CACAGATATTATCACTCTGgtgagtaccaagtcacaaatatttttgtatgataagccaagagtggagtg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCA------ATTCGGCAGCCAAGCTTGCACATG-AGTGCAGCTGCTGCGTCCCGAGA----------TATCACTCTG gctaatgtggcttccaatatgaagaaccatgagtctttttgttccttcagTGCCGTGAGCACTTTTGTAAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGAAGTCCAGCTTGCATATGCAGTGCAGCT-------------ACCACAGATATTATCACTCTGgtgagtaccaagtcacaaatatttttgtatgataagccaagagtggagtg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGG----CAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaatatgaagaaccatgagtctttttgttccttcagTGCCGTGAGCACTTTTGTAAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGAAGTCCAGCTTGCATATGCAGTGCAGCTACCACAGATATTATCACTCTGgtgagtaccaagtcacaaatatttttgtatgataagccaagagtggagtg Alignment from Exonerate_coding2genome gctaatgtggcttccaatatgaagaaccatgagtctttttgttccttcagtgccgtgagcacttttgtaagagctctagattgcaacagctccatttctattcagaagtccagcttgcatatgcagtgcagctaccacagatattatcactctggtgagtaccaagtcacaaatatttttgtatgataagccaagagtggagtg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCT------------------GCTGCGTCCCGAGATATCACT---CTGTTC gctaatgtggcttccaatatgaagaaccatgagtctttttgttccttcagTGCCGTGAGCACTTTTGTAAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGAAGTCCAGCTTGCATATGCAGTGCAGCTACCACAGATATTATCACTCTGGTGAGTACCAAGTCACAAATATTTTTgtatgataagccaagagtggagtg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAG-GAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaccatcaaaaccctcaggattggtgtgctctgttttcagTTTCATGCTATGGATACCTTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGTCAAGATGAGATGGGACGAATGGTCCGCTTCCGAAGCCATGCTGGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTCAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactgaaaaga Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATG-GAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaccatcaaaaccctcaggattggtgtgctctgttttcagTTTCATGCTATGGATACCTTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGTCAAGATGAGATGGGACGAATGGTCCGCTTCCGAAGCCATGCTGGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTCAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactgaaaaga Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATG-GAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaccatcaaaaccctcaggattggtgtgctctgttttcagTTTCATGCTATGGATACCTTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGTCAAGATGAGATGgGACGAATGGTCCGCTTCCGAAGCCATGCTGGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTCAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactgaaaaga Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGAT-GGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaccatcaaaaccctcaggattggtgtgctctgttttcagTTTCATGCTATGGATACCTTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGTCAAGATGAGATGGGACGAATGGTCCGCTTCCGAAGCCATGCTGGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTCAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactgaaaaga Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGAT-GGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaccatcaaaaccctcaggattggtgtgctctgttttcagTTTCATGCTATGGATACCTTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGTCAAGATGAGATGGGACGAATGGTCCGCTTCCGAAGCCATGCTGGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTCAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactgaaaaga Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATG-GAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaccatcaaaaccctcaggattggtgtgctctgttttcagTTTCATGCTATGGATACCTTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGTCAAGATGAGATGGGACGAATGGTCCGCTTCCGAAGCCATGCTGGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTCAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactgaaaaga Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATG-GAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaccatcaaaaccctcaggattggtgtgctctgttttcagTTTCATGCTATGGATACCTTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGTCAAGATGAGATGGGACGAATGGTCCGCTTCCGAAGCCATGCTGGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTCAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactgaaaaga Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATG-GAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaccatcaaaaccctcaggattggtgtgctctgttttcagTTTCATGCTATGGATACCTTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGTCAAGATGAGATGGGACGAATGGTCCGCTTCCGAAGCCATGCTGGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTCAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactgaaaaga #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG tactgaaaagacggaccaattgaacactatgccttccccactgcccccagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgatgggcaggataagtgaggaccagaatcaaaggctatcatgagcctg Alignment from CESAR CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG tactgaaaagacggaccaattgaacactatgccttccccactgcccccagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgatgggcaggataagtgaggaccagaatcaaaggctatcatgagcctg Alignment from Spaln_aa2Genome CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG tactgaaaagacggaccaattgaacactatgccttccccactgcccccagCTACCCTGGAAGTCAcCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgatgggcaggataagtgaggaccagaatcaaaggctatcatgagcctg Alignment from Spaln_nt2Genome CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG tactgaaaagacggaccaattgaacactatgccttccccactgcccccagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgatgggcaggataagtgaggaccagaatcaaaggctatcatgagcctg Alignment from Pairagon CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG tactgaaaagacggaccaattgaacactatgccttccccactgcccccagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgatgggcaggataagtgaggaccagaatcaaaggctatcatgagcctg Alignment from Exonerate_protein2genome CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG tactgaaaagacggaccaattgaacactatgccttccccactgcccccagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgatgggcaggataagtgaggaccagaatcaaaggctatcatgagcctg Alignment from Exonerate_coding2genome CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGAAAAGATTGAAAGCTGCTGAA---GCAGACAGCAAACTGAAACAGGTCTA tactgaaaagacggaccaattgaacactatgccttccccactgcccccagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGGTGATGGGCAGGATAAGTGAGGACCAGAATCAAAGGCTATCATGAGCCTG Alignment from GeneWise CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG tactgaaaagacggaccaattgaacactatgccttccccactgcccccagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgatgggcaggataagtgaggaccagaatcaaaggctatcatgagcctg #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTta ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACAGGTGTATATCCCCACTtagtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTta ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACAGGTGTATATCCCCACTtagtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTG-AAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTgAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAAC-TGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAAC-TGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGC-AAACTGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from Exonerate_coding2genome ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagaaaaggctaaaagctgccgaagcagacagtatacttgaaacaggtgtatatccccacttagtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac Alignment from GeneWise AAAAGATTGAAAGCTGCTGAAGCAGACAGC-AAACTGAAACAGGTCTACATCCCCACTTA ttgtccatgagatgattccaaatttagcttaatccatgtgctttccccagAAAAGGCTAAAAGCTGCCGAAGCAGACAGTATACTTGAAACAGGTGTATATCCCCACTTAgtgagcctgcgagcattgcaaaacgagaacccctaatctgccatggtgac #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCT-CGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagttGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACA-CCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagttGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCT-CGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCcAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTC-GGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTC-GGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACA-CCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACA-CCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAA-ACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCC-TGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTCTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCC-TGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTCTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCC-TGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTcTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGC-CTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTCTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGC-CTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTCTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCC-TGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTCTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAG-GCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTCTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat #### Myof_ID7472_30 --> 0 - 1 Original Alignment GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAG-CACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACa tgcttgttatggatgagggaagccataatcacctccactcccaactccagGTT---GACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCCATAGTGCCAGCACTCTGTTTGGGGCAAACACACCCATTGTTTCCTGTAATTATGATagtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from CESAR GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAG-CACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACa tgcttgttatggatgagggaagccataatcacctccactcccaactccag---GTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCCATAGTGCCAGCACTCTGTTTGGGGCAAACACACCCATTGTTTCCTGTAATTATGATagtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Spaln_aa2Genome GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAG-CACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccag---GTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGcCATAGTGCCAGCACTCTGTTTGGGGCAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Spaln_nt2Genome GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGC-ACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccag---GTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCCATAGTGCCAGCACTCTGTTTGGGGCAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Pairagon GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAG-CACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccag---GTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCCATAGTGCCAGCACTCTGTTTGGGGCAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Exonerate_protein2genome GCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAG-CACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccagGTTGACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCCATAGTGCCAGCACTCTGTTTGGGGCAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAG-AAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA tgcttgttatggatgagggaagccataatcacctccactcccaactccagGTT---GACACCACGGAAGATGGAGAAGAAAAGGGCCCTGAAACGCAGAAGCCATAGTGCCAGCACTCTGTTTGGGGCAAACACACCCATTGTTTCCTGTAATTATGATAgtaatgttaaagcatgactgtcatctctgcatctttccacttttgcctct #### Myof_ID7493_9 --> 0 - 0 Original Alignment GTTTATAATTCC-CATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgaacgtttgggaggaaagaacgttgcttggctcctctattccaccgcagATTTACAATTCACCATTCTTTGAGAGCAGAGTGTTTTATGGGGGAATTTAAGgtaaggaacacaaccatcatgttgaatgagatgagagtcccaagaggcgt Alignment from CESAR GTTTATAATTCC-CATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagcgtttgggaggaaagaacgttgcttggctcctctattccaccgcagATTTACAATTCACCATTCTTTGAGAGCAGAGTGTTTTATGGGGGAATTTAAGgtaaggaacacaaccatcatgttgaatgagatgagagtcccaagaggcgt Alignment from Spaln_aa2Genome GTTTATAATTCC-CATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgaacgtttgggaggaaagaacgttgcttggctcctctattccaccgcagATTTACAATTCAcCATTCTTTGAGAGCAGAGTGTTTTATGGGGGAATTTAAGgtaaggaacacaaccatcatgttgaatgagatgagagtcccaagaggcgt Alignment from Spaln_nt2Genome GTTTATAATTC-CCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgaacgtttgggaggaaagaacgttgcttggctcctctattccaccgcagATTTACAATTCACCATTCTTTGAGAGCAGAGTGTTTTATGGGGGAATTTAAGgtaaggaacacaaccatcatgttgaatgagatgagagtcccaagaggcgt Alignment from Pairagon ---------------------------------------------------TTTATAATTC-CCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG TGAACGTTTGGGAGGAAAGAACGTTGCTTGGCTCCTCTATTCCACCGCAGATTTACAATTCACCATTCTTTGAGAGCAGAGTGTTTTATGGGGGAATTTAAGgtaaggaacacaaccatcatgttgaatgagatgagagtcccaagaggcgt Alignment from Exonerate_protein2genome GTTTATAATTCC-CATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgaacgtttgggaggaaagaacgttgcttggctcctctattccaccgcagATTTACAATTCACCATTCTTTGAGAGCAGAGTGTTTTATGGGGGAATTTAAGgtaaggaacacaaccatcatgttgaatgagatgagagtcccaagaggcgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise -----------------------------------------------CGGGTTTATAAT-TCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG TGAACGTTTGGGAGGAAAGAACGTTGCTTGGCTCCTCTATTCCACCGCAGATTTACAATTCACCATTCTTTGAGAGCAGAGTGTTTTATGGGGGAATTTAAGgtaaggaacacaaccatcatgttgaatgagatgagagtcccaagaggcgt #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAG-AATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGCAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from CESAR GAGCGAATCTTCATGGAG-AATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGCAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAG-AATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGcAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAG-AATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGCAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Pairagon GAGCGAATCTTCATGGAG-AATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGCAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAG-AATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGCAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAG-AATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGCAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa Alignment from GeneWise GAGCGAATCTTCATG-GAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtagttatcctagagtactttctcactgcagGAGCGAATCTTCATGGAGCAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagtccaccaagaacatgggcaggagggcaagataagaagaggaggaa #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATA-GAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcaggtGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATACAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATA-GAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcaggtGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATACAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAG-AACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATACAAgAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAG-AGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATACAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATA-GAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATACAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAG-AACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATACAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAG-AACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATACAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATA-GAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATACAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTG-TGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtttcaaataactcttctctttctctcctcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTACTGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCCGGCCGTGTGGGTATTAACTCTGACCTGCCTGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaaggtgtgcagtaggtgcatgggcatcccctgcatacctggattgtgt Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTG-TGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtttcaaataactcttctctttctctcctcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTACTGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCCGGCCGTGTGGGTATTAACTCTGACCTGCCTGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaaggtgtgcagtaggtgcatgggcatcccctgcatacctggattgtgt Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTG-TGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtttcaaataactcttctctttctctcctcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTAcTGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCCGGCCGTGTGGGTATTAACTCTGACCTGCCTGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaaggtgtgcagtaggtgcatgggcatcccctgcatacctggattgtgt Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTG-TGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtttcaaataactcttctctttctctcctcagGCCTCTAACCCAGGGCCATT---GAGTGATAGTGATGTGTTACTGGCAACGGGCACAGCT---AGATACAGTTTTTCACCCCGGCCGTGTGGGTATTAACTCTGACCTGCCTGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaaggtgtgcagtaggtgcatgggcatcccctgcatacctggattgtgt Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTG-TGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtttcaaataactcttctctttctctcctcagGCCTCTAACCCAGGGCCATT---GAGTGATAGTGATGTGTTACTGGCAACGGGCACAGCT---AGATACAGTTTTTCACCCCGGCCGTGTGGGTATTAACTCTGACCTGCCTGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaaggtgtgcagtaggtgcatgggcatcccctgcatacctggattgtgt Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTG-TGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtttcaaataactcttctctttctctcctcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTACTGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCCGGCCGTGTGGGTATTAACTCTGACCTGCCTGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaaggtgtgcagtaggtgcatgggcatcccctgcatacctggattgtgt Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTG-TGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtttcaaataactcttctctttctctcctcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTACTGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCCGGCCGTGTGGGTATTAACTCTGACCTGCCTGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaaggtgtgcagtaggtgcatgggcatcccctgcatacctggattgtgt Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTG-CTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtttcaaataactcttctctttctctcctcagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGATGTGTTACTGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCCGGCCGTGTGGGTATTAACTCTGACCTGCCTGATGACGCATTAGTTGTACATGGAAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtaaggtgtgcagtaggtgcatgggcatcccctgcatacctggattgtgt #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAG-GGCAAGCCCAACCCTGACCAGag ctggtggctgcttgcaagaaaattctgctctgcttttcccggtgttccagaGTTAATCTTCCACCTGAGCAGGTTACACAGGTTACTGTGGAG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCCAACCCTGACCAGaggtgagaaagttgtatttgccctaacatccctcacacctacagacctgcac Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAG-GGCAAGCCCAACCCTGACCAGag ctggtggctgcttgcaagaaaattctgctctgcttttcccggtgttccagaGTTAATCTTCCACCTGAGCAGGTTACACAGGTTACTGTGGAG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCCAACCCTGACCAGaggtgagaaagttgtatttgccctaacatccctcacacctacagacctgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAG-GGCAAGCCCAACCCTGACCAGAG ctggtggctgcttgcaagaaaattctgctctgcttttcccggtgttccagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTTACTGTGGAG---CTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAcGGCAAGCCCAACCCTGACCAGAGgtgagaaagttgtatttgccctaacatccctcacacctacagacctgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAG-AAGGGCAAGCCCAACCCTGACCAGAG ctggtggctgcttgcaagaaaattctgctctgcttttcccggtgttccagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTTACTGTGG---AGCTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCCAACCCTGACCAGAGgtgagaaagttgtatttgccctaacatccctcacacctacagacctgcac Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAG-GGCAAGCCCAACCCTGACCAGAG ctggtggctgcttgcaagaaaattctgctctgcttttcccggtgttccagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTTACTGTGG---AGCTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCCAACCCTGACCAGAGgtgagaaagttgtatttgccctaacatccctcacacctacagacctgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAG-GGCAAGCCCAACCCTGACCAGAG ctggtggctgcttgcaagaaaattctgctctgcttttcccggtgttccagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTTACTGTG---GAGCTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCCAACCCTGACCAGAGgtgagaaagttgtatttgccctaacatccctcacacctacagacctgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAG-GGCAAGCCCAACCCTGACCAGAG ctggtggctgcttgcaagaaaattctgctctgcttttcccggtgttccagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTTACTGTG---GAGCTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCCAACCCTGACCAGAGgtgagaaagttgtatttgccctaacatccctcacacctacagacctgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAG-AAGGGCAAGCCCAACCCTGACCAGAG ctggtggctgcttgcaagaaaattctgctctgcttttcccggtgttccagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTTACTGTG---GAGCTCCATTTCACTGAGACCACTGCCAACAACATGAGCAAGAAACGGCAAGCCCAACCCTGACCAGAGgtgagaaagttgtatttgccctaacatccctcacacctacagacctgcac #### Myrf_ID2732_6 --> 1 - 1 Original Alignment aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCA-CCCTGGCACCCGCCAGGTGCACCCTCCCCAg gagggtggaccaatatttcctgcaatctgcagcgatgtatcttttttcagaCTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCACTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCCTGGCACCCACCAGGTGCACCCTCCCCTggtaggggagaccaaagtagactggatgaccatgcagatttagtcactgac Alignment from CESAR aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCA-CCCTGGCACCCGCCAGGTGCACCCTCCCCAg gagggtggaccaatatttcctgcaatctgcagcgatgtatcttttttcagaCTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCACTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCCTGGCACCCACCAGGTGCACCCTCCCCTggtaggggagaccaaagtagactggatgaccatgcagatttagttctctgc Alignment from Spaln_aa2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCC-TGGCACCCGCCAGGTGCACCCTCCCCAG gagggtggaccaatatttcctgcaatctgcagcgatgtatcttttttcagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCACTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCcTGGCACCCACCAGGTGCACCCTCCCCTGgtaggggagaccaaagtagactggatgaccatgcagatttagtcactgac Alignment from Spaln_nt2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACC-CTGGCACCCGCCAGGTGCACCCTCCCCAG gagggtggaccaatatttcctgcaatctgcagcgatgtatcttttttcagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCACTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCCTGGCACCCACCAGGTGCACCCTCCCCTGgtaggggagaccaaagtagactggatgaccatgcagatttagtcactgac Alignment from Pairagon ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCA-CCCTGGCACCCGCCAGGTGCACCCTCCCCAG gagggtggaccaatatttcctgcaatctgcagcgatgtatcttttttcagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCACTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCCTGGCACCCACCAGGTGCACCCTCCCCTGgtaggggagaccaaagtagactggatgaccatgcagatttagtcactgac Alignment from Exonerate_protein2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCA-CCCTGGCACCCGCCAGGTGCACCCTCCCCAG gagggtggaccaatatttcctgcaatctgcagcgatgtatcttttttcagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCACTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCCTGGCACCCACCAGGTGCACCCTCCCCTGgtaggggagaccaaagtagactggatgaccatgcagatttagtcactgac Alignment from Exonerate_coding2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCA-CCCTGGCACCCGCCAGGTGCACCCTCCCCAG gagggtggaccaatatttcctgcaatctgcagcgatgtatcttttttcagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCACTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCCTGGCACCCACCAGGTGCACCCTCCCCTGgtaggggagaccaaagtagactggatgaccatgcagatttagtcactgac Alignment from GeneWise ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACT-CCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gagggtggaccaatatttcctgcaatctgcagcgatgtatcttttttcagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTGAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCACTGCACCCTGCCAGAGTCCCTTCACCTCCATGGTTACCTCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCTCAGTATTGCCCGGGCTCAAACTCCACCCCTGGCACCCACCAGGTGCACCCTCCCCTGgtaggggagaccaaagtagactggatgaccatgcagatttagtcactgac #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGca ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagcACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTCTTCCATGAGACACTTcagtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGca ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagcACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTCTTCCATGAGACACTTcagtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCcTACCAGTTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCG-CCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCC-TATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from Exonerate_coding2genome ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagcacacagagaaagaaagttatgttaactgtgttcaaacacaatcatgatgccctaccagttcttccatgagacacttcagtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggctgaccatgtctgtaggtgtgttctgcttgcctctacccagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTCAAACACAATCATGATGCCCTACCAGTTCTTCCATGAGACACTTCAgtatctaacaaatattcaactcagagatcaaaatttagttaagatacaaa #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGG-GATGAAGTCCTGTACtg atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacaggTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCACGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGCGACGAGGTCTTATATtggtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGG-GATGAAGTCCTGTACtg atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacaggTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCACGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGCGACGAGGTCTTATATtggtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGC-GGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCACGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTgGGCGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGG-GATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCACGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGCGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGG-GATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCACGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGCGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGC-GGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCACGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGCGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGC-GGGGATGAAGTCCTGTACTG atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCACGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGCGACGAGGTCTTATATTGgtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAA- atcaggatctagggggcagtctactaatcaacgtgtgttctatttcacagGTATGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCACGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGCGACGAGgtcttatattggtaaggaacttttgcctttggtataagaggttatgcaattagtggagtag #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg atctgctgctggattctattctcctccgtctcctttacctgctttggcagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCA---GAGGCTAACAGTGTGGAAGTTggtaagagtctagaagtttccaggcaggatgctgtttgtttgtttgttttt Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg atctgctgctggattctattctcctccgtctcctttacctgctttggcagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTggtaagagtctagaagtttccaggcaggatgcattttctccgtttgattta Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGcGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctgtttgtttgtttgttttt Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAG---AGGCTAACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctgtttgtttgtttgttttt Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAG---AGGCTAACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctgtttgtttgtttgttttt Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctgtttgtttgtttgttttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTG-GTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGCGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAGAGGCT---AACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctgtttgtttgtttgttttt #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGG-GCTGTGGAGCCTg tactcaataattactctaaatttcaattttgttttttgtttttaaactagtGACATAAAAGTGCGTGTTCACAACAGATTAGAACTTAGGACTTCCACTAATGTGCTTGGCATCATCCAGGGCCAGTGTAGAGCCTggtgagtccattcacagtccaccctgccctctggcttgcctaccacctggt Alignment from CESAR tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGG-GCTGTGGAGCCTg tactcaataattactctaaatttcaattttgttttttgtttttaaactagtGACATAAAAGTGCGTGTTCACAACAGATTAGAACTTAGGACTTCCACTAATGTGCTTGGCATCATCCAGGGCCAGTGTAGAGCCTggtgagtccattcacagtccaccctgccctctggcttgcctaccacctggt Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGG-GCTGTGGAGCCTG tactcaataattactctaaatttcaattttgttttttgtttttaaactagTGACATAAAAGTGCGTGTTCACAACAGATTAGAACTTAGGACTTCCACTAATGTGCTTGGCATCATCCAGGGCcAGTGTAGAGCCTGgtgagtccattcacagtccaccctgccctctggcttgcctaccacctggt Alignment from Spaln_nt2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGC-TGTGGAGCCTG tactcaataattactctaaatttcaattttgttttttgtttttaaactagTGACATAAAAGTGCGTGTTCACAACAGATTAGAACTTAGGACTTCCACTAATGTGCTTGGCATCATCCAGGGCCAGTGTAGAGCCTGgtgagtccattcacagtccaccctgccctctggcttgcctaccacctggt Alignment from Pairagon TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGG-GGCTGTGGAGCCTG tactcaataattactctaaatttcaattttgttttttgtttttaaactagTGACATAAAAGTGCGTGTTCACAACAGATTAGAACTTAGGACTTCCACTAATGTGCTTGGCATCATCCAGGGCCAGTGTAGAGCCTGgtgagtccattcacagtccaccctgccctctggcttgcctaccacctggt Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGG-GCTGTGGAGCCTG tactcaataattactctaaatttcaattttgttttttgtttttaaactagTGACATAAAAGTGCGTGTTCACAACAGATTAGAACTTAGGACTTCCACTAATGTGCTTGGCATCATCCAGGGCCAGTGTAGAGCCTGgtgagtccattcacagtccaccctgccctctggcttgcctaccacctggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTG tactcaataattactctaaatttcaattttgttttttgtttttaaactagTGACATAAAAGTGCGTGTTCACAACAGATTAGAACTTAGGACTTCCACTAATGTGCTTGGCATCATCCAGGGCCAGTgtagagcctggtgagtccattcacagtccaccctgccctctggcttgcctaccacctggt #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACA-CCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagcaAATACTACTCTGCAGGCCCAGGGCACACCCACCGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACA-CCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagcaAATACTACTCTGCAGGCCCAGGGCACACCCACCGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACA-CCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACAcCCACCGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCT-CCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACCGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCT-CCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACCGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACA-CCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACCGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from Exonerate_coding2genome caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagcaaatactactctgcaggcccagggcacacccaccggtacaaggtgtgctcttttcttcagccaaagatgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt Alignment from GeneWise ------GCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgtgttcacagccaacaggacagtctggctaacttctcagCAAATACTACTCTGCAGGCCCAGGGCACACCCACCGGTACAAGGTGTGCTCTTTTCTTCAGCCAAAGATgtaagcagatgaccttcaaaggagttaggctcaaccacaccttcctgggt #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTC-AGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcaggtTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTCAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGggtaaggcacaacatcctgaggcagtgtgcccctttgtttctgtctcaggg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTC-AGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcaggtTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTCAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGggtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcaggg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTC-AGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTcAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtgtgcccctttgtttctgtctcagGG Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATG-TCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTCAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtgtgcccctttgtttctgtctcagGG Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATG-TCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTCAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtgtgcccctttgtttctgtctcagGG Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTC-AGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTCAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtgtgcccctttgtttctgtctcagGG Alignment from Exonerate_coding2genome atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcaggttttagtagccaacaagctgttgcccggactgctgggagtgtgcttctccagctcagtgatagcctcttcctgcccctaaatgttcagcgactatagtgagaccttacaaggtttccttcaggcagctcaagaagccctaggtacccaattagaaaagcagaatgtaagcttgggtaaggcacaacatcctgaggcagtgtgcccctttgtttctgtctcaggg Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTC-AGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG------------------------------------------------GGG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTCAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGGTAAGGCACAACATCCTGAGGCAGTGTGCCCCTTTGTTTCTGTCTCAGGG #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTA-GAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagtCCTCTGCAGGTTCAGATGGTTAACGACCAACTGATGCTCTTACGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACaggtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTA-GAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagtCCTCTGCAGGTTCAGATGGTTAACGACCAACTGATGCTCTTACGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACaggtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTA-GAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACGACCAACTGATGCTCTTAcGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTA-GAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACGACCAACTGATGCTCTTACGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTA-GAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACGACCAACTGATGCTCTTACGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTA-GAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACGACCAACTGATGCTCTTACGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTA-GAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACGACCAACTGATGCTCTTACGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAA-CGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG acctgagctaggtgctggctgtcagtgatcctctttgctttctcccgcagTCCTCTGCAGGTTCAGATGGTTAACGACCAACTGATGCTCTTACGAGTGTGCATTTTTGAACCCTAGGGCGTTCCCAGAGGAGAGGCATTACAGgtgagcccatgtcaattaagttgcttagtcccaggcttagaactagagtt #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCAC-AGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACCAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCAC-AGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACCAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCAC-AGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACcAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATG-CCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACCAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCA-CAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACCAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCAC-AGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACCAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCAC-AGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACCAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCAC-AGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgaccttgctctgtagtgcgcatgaaactctttaactctctcatacagATATGTAACTATGAGGGACCCACAAAGATTGTGGTTGACCTGGCGACACACAGTGACCCACCTCGTGCACATGCCCACCAGTCTGGTGGGCAAGCAGTGTTCAGAACTCGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtgagtgatgcttctctgtcttggagttgcaaatgatccaatggatatcc #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGC-GATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa ggcaatttattgcttgcaccacccatattccttggtgcttttcccctcagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTCGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGACAGCagtaaggctggcacacactgataactgataagagttcaggtaagagatctg Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGC-GATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa ggcaatttattgcttgcaccacccatattccttggtgcttttcccctcagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTCGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGACAGCagtaaggctggcacacactgataactgataagagttcaggtaagagatctg Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGC-GATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcaccacccatattccttggtgcttttcccctcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTcGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaaggctggcacacactgataactgataagagttcaggtaagagatctg Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAG-CGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcaccacccatattccttggtgcttttcccctcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTCGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaaggctggcacacactgataactgataagagttcaggtaagagatctg Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAG-CGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcaccacccatattccttggtgcttttcccctcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTCGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaaggctggcacacactgataactgataagagttcaggtaagagatctg Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGC-GATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcaccacccatattccttggtgcttttcccctcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTCGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaaggctggcacacactgataactgataagagttcaggtaagagatctg Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGC-GATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcaccacccatattccttggtgcttttcccctcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTCGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaaggctggcacacactgataactgataagagttcaggtaagagatctg Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCT-AGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA ggcaatttattgcttgcaccacccatattccttggtgcttttcccctcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTAGGGCCAGTCGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaaggctggcacacactgataactgataagagttcaggtaagagatctg #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagatGACATCGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagatGACATCGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGcCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCA-AGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactgagaatggcctctctttcccagATGACATCGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCCTTCGGGGACTTCTCTCCCACAGATGTTTATAAACAGgtaatccaacctaattcatattccccctcctcagtgaaaacatggtggcc #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA-TATTAC---CCTCTGGTGGAAg catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACACTATTATTACTCTTTGGTAGAGggtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA----TATTACCCTCTGGTGGAAg catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACACTATTATTACTCTTTGGTAGAGggtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA----TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACACTAtTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA----TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACACTATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA----TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACACTATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA----TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACACTATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA----TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACACTATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACACTATTA---TTACTCTTTGgtagagggtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT-TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gcatgtgtctgtatttattaagtctcaacctgatgtgttcttctctccagacAAGGAGGAA------AGTAAAAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACGTCTCTGGTGGGTCTGCGGGGGGTTATGGAGATGCTGGGGGAggtaagtaagcacaaatgaaaggagaaaggaaggagaatggttaacgatat Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGA-GGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gcatgtgtctgtatttattaagtctcaacctgatgtgttcttctctccagacAAGGAGGAA------AGTAAAAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACGTCTCTGGTGGGTCTGCGGGGGGTTATGGAGATGCTGGGGGAggtaagtaagcacaaatgaaaggagaaaggaaggagaatggttaacgatat Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT-TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgtctgtatttattaagtctcaacctgatgtgttcttctctccagACAAGGAGGAA------AGTAAAAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACGTcTCTGGTGGGTCTGCGGGGGGTTATGGAGATGCTGGGGGAGgtaagtaagcacaaatgaaaggagaaaggaaggagaatggttaacgatat Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT-TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgtctgtatttattaagtctcaacctgatgtgttcttctctccagACAAGGAGGAA------AGTAAAAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACGTCTCTGGTGGGTCTGCGGGGGGTTATGGAGATGCTGGGGGAGgtaagtaagcacaaatgaaaggagaaaggaaggagaatggttaacgatat Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT-TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgtctgtatttattaagtctcaacctgatgtgttcttctctccagACAAGGAGGAA------AGTAAAAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACGTCTCTGGTGGGTCTGCGGGGGGTTATGGAGATGCTGGGGGAGgtaagtaagcacaaatgaaaggagaaaggaaggagaatggttaacgatat Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT-TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgtctgtatttattaagtctcaacctgatgtgttcttctctccagACAAGGAGGAA------AGTAAAAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACGTCTCTGGTGGGTCTGCGGGGGGTTATGGAGATGCTGGGGGAGgtaagtaagcacaaatgaaaggagaaaggaaggagaatggttaacgatat Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT-TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgtctgtatttattaagtctcaacctgatgtgttcttctctccagACAAGGAGGAA------AGTAAAAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACGTCTCTGGTGGGTCTGCGGGGGGTTATGGAGATGCTGGGGGAGgtaagtaagcacaaatgaaaggagaaaggaaggagaatggttaacgatat Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGA-GGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gcatgtgtctgtatttattaagtctcaacctgatgtgttcttctctccagACAAGGAGGAA------AGTAAAAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGTGGAACCCATATGGGTGGACGTCTCTGGTGGGTCTGCGGGGGGTTATGGAGATGCTGGGGGAGgtaagtaagcacaaatgaaaggagaaaggaaggagaatggttaacgatat #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCA-GCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATACGCCACTCCATCTGGCACGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCA-GCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATACGCCACTCCATCTGGCACGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCA-GCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATACGCCACTCCATCTGGCAcGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCA-GCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATACGCCACTCCATCTGGCACGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCA-GCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATACGCCACTCCATCTGGCACGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCA-GCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATACGCCACTCCATCTGGCACGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCA-GCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATACGCCACTCCATCTGGCACGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCA-GCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gatttggttgattgtggccagactttgttctctgtcccttctctgttcagCTACATGCCAATGTCAATACTTGGACCTTTGCTGCAAATACGCCACTCCATCTGGCACGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaggtcttgcattaacttgcatttacaaaattgaaagccaggggaggaa #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCA-GAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtaggcGCTGATACCCATACACGAGAATGAAGAGCCACTGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from CESAR gtGCTGACATCCATGCA-GAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtaggcGCTGATACCCATACACGAGAATGAAGAGCCACTGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from Spaln_aa2Genome GCTGGTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACAC---GAGAATGAAGAGCCACTGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from Spaln_nt2Genome GTGCTGACATCCATGCA-GAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACACGAGAATGAAGAGCCACTGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from Pairagon GTGCTGACATCCATGCA-GAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGGTG----------------------------------------------- cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACACGAGAATGAAGAGCCACTGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGGTGAGTTACGCAGAGTCTGCTACTGTTCAGAAAGTATCCAAGTGGGTGTA Alignment from Exonerate_protein2genome GTGCTGACATCCATGCA-GAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACACGAGAATGAAGAGCCACTGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from Exonerate_coding2genome GTGCTGACATCCATGCA-GAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagtagGCGCTGATACCCATACACGAGAATGAAGAGCCACTGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta Alignment from GeneWise --GGTGCTGACATCCAT-GCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagttagagactataagtagtctttcaatgtttccttgtctcctgagTAGGCGCTGATACCCATACACGAGAATGAAGAGCCACTGTGTCCTCTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGCGGTCATACCCCTCTTGATCTCACTCGCAGTACAAAGgtgagttacgcagagtctgctactgttcagaaagtatccaagtgggtgta #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTG---AAGACTCTGCTGCTAAATGCTGCTCAGAAC-ACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTAAACGCTGCTCAGAATCTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAggtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from CESAR GTGAAG---ACTCTGCTGCTAAATGCTGCTCAGAAC-ACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTAAACGCTGCTCAGAATCTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAggtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Spaln_aa2Genome GTGAAGACTCTGCTG---CTAAATGCTGCTCAGAAC-ACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTAAACGCTGCTCAGAATcTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Spaln_nt2Genome GTGAAGA---CTCTGCTGCTAAATGCTGCTCAGAA-CACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTAAACGCTGCTCAGAATCTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Pairagon GT---GAAGACTCTGCTGCTAAATGCTGCTCAGAA-CACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTAAACGCTGCTCAGAATCTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Exonerate_protein2genome GTG---AAGACTCTGCTGCTAAATGCTGCTCAGAAC-ACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacacatacttcccctttaggcctccatctgccatccccacagGTAAAAAAAACCCTACTGCTAAACGCTGCTCAGAATCTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from Exonerate_coding2genome tgatagtgacacatacttcccctttaggcctccatctgccatccccacaggtaaaaaaaaccctactgctaaacgctgctcagaatctccacagagccacccttggccccaccgaccccagtaggtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa Alignment from GeneWise tgatagtgacacatacttcccctttaggcctccatctgccatccccacaggtaaaaaaaaccctactgctaaacgctgctcagaatctccacagagccacccttggccccaccgaccccagtaggtacccctgcagtgacttctggcacaaggcgcaatatccttagagattaa #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGA-CTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG ataagcttctgcacgtacattggactaccggcaccctccttccttctcagggCCAGGCCTGTCCCTAGGAGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCACAAGGTAGCTGGGCAAAGCTGGCAGAGCGTCCTGGGATTGAGGAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagtcagttagactgctgaggcctcaaccaaaccgtaatctctctctt Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGA-CTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG ataagcttctgcacgtacattggactaccggcaccctccttccttctcagggCCAGGCCTGTCCCTAGGAGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCACAAGGTAGCTGGGCAAAGCTGGCAGAGCGTCCTGGGATTGAGGAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagtcagttagactgctgaggcctcaaccatgggctgcttctcatccc Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGA-CTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG ataagcttctgcacgtacattggactaccggcaccctccttccttctcagGGCCAGGCCTGTCCCTAGGAGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCACAAGGTAGCTGGGCAAAGCTGGCAGAGCGTcCTGGGATTGAGGAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagtcagttagactgctgaggcctcaaccaaaccgtaatctctctctt Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGAC-TGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG ataagcttctgcacgtacattggactaccggcaccctccttccttctcagGGCCAGGCCTGTCCCTAGGAGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCACAAGGTAGCTGGGCAAAGCTGGCAGAGCGTCCTGGGATTGAGGAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagtcagttagactgctgaggcctcaaccaaaccgtaatctctctctt Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCG-ACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG ataagcttctgcacgtacattggactaccggcaccctccttccttctcagGGCCAGGCCTGTCCCTAGGAGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCACAAGGTAGCTGGGCAAAGCTGGCAGAGCGTCCTGGGATTGAGGAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagtcagttagactgctgaggcctcaaccaaaccgtaatctctctctt Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGA-CTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG ataagcttctgcacgtacattggactaccggcaccctccttccttctcagGGCCAGGCCTGTCCCTAGGAGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCACAAGGTAGCTGGGCAAAGCTGGCAGAGCGTCCTGGGATTGAGGAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagtcagttagactgctgaggcctcaaccaaaccgtaatctctctctt Alignment from Exonerate_coding2genome TGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAGGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGA-CTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG AGCTTCTGCACGTACATTGGAC---TACCGGCACCCTCCTTCCTTCTCAGGGCCAGGCCTGTCCCTAGGAGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCACAAGGTAGCTGGGCAAAGCTGGCAGAGCGTCCTGGGATTGAGGAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagtcagttagactgctgaggcctcaaccaaaccgtaatctctctctt Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGA-CTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG ataagcttctgcacgtacattggactaccggcaccctccttccttctcagGGCCAGGCCTGTCCCTAGGAGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCACAAGGTAGCTGGGCAAAGCTGGCAGAGCGTCCTGGGATTGAGGAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagtcagttagactgctgaggcctcaaccaaaccgtaatctctctctt #### Noc3l_ID7658_17 --> 2 - 0 Original Alignment gtGCCACCAACGACGGCATT-GAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacaggcACCACTAATGATGGCATACGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from CESAR gtGCCACCAACGACGGCATT-GAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacaggcACCACTAATGATGGCATACGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Spaln_aa2Genome GTGCCACCAACGACGGCATT-GAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATAcGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Spaln_nt2Genome GTGCCACCAACGACGGCATT-GAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATACGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Pairagon GTGCCACCAACGACGGCAT-TGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATACGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Exonerate_protein2genome GTGCCACCAACGACGGCATT-GAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATACGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from Exonerate_coding2genome GTGCCACCAACGACGGCATT-GAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATACGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca Alignment from GeneWise GTGCCACCAACGACGGC-ATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcacccctgaatacaagaggtgatgaatcctcttcttcctgtttccacagGCACCACTAATGATGGCATACGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGAGGGCTATTGCCTTCATCAAGCGCCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTTTACCAACTACAAGGGTACTGATGCATgtatatcaaagtctgaagagagttaagttgtgcaggtcaaacaggctgca #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTT-CATATTCTTTCTGGACAAg gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCCATGTTCTTTCTGGACCAggtatgaagtccatttggtctccctttcatttcactaaaatattttttttt Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTT-CATATTCTTTCTGGACAAg gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCCATGTTCTTTCTGGACCAggtatgaagtccatttggtctccctttcatttcactaaatcgtgtgttctc Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCT-TTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTtTTCCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaaatattttttttt Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTC-ATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaaatattttttttt Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTT-CATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaaatattttttttt Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCT-TTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaaatattttttttt Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCT-TTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaaatattttttttt Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGA------------------------------------------------------ gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCCATGTTCTTTCTGGACCAGGTATGAAGTCCATTTGGTCTCCCTTTCATTTCACTAAAATATTTTTTTTT #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGAT-GATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg tgaattccagaatgcaaggcaatggcacgaattttaaaataattttatagCTTGGTGTTGATCGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCAGATTggtacttggggagaatgtctaggactattatgcagtgatttgccagcaaca Alignment from CESAR CTCAGTGTGGAT-GATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg tgaattccagaatgcaaggcaatggcacgaattttaaaataattttatagCTTGGTGTTGATCGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCAGATTggtacttggggagaatgtctaggactattatgcagtgatttgccagcaaca Alignment from Spaln_aa2Genome CTCAGTGTGGAT-GATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagaatgcaaggcaatggcacgaattttaaaataattttatagCTTGGTGTTGATcGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCAGATTGgtacttggggagaatgtctaggactattatgcagtgatttgccagcaaca Alignment from Spaln_nt2Genome CTCAGTGTGGAT-GATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagaatgcaaggcaatggcacgaattttaaaataattttatagCTTGGTGTTGATCGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCAGATTGgtacttggggagaatgtctaggactattatgcagtgatttgccagcaaca Alignment from Pairagon CTCAGTGTGGAT-GATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagaatgcaaggcaatggcacgaattttaaaataattttatagCTTGGTGTTGATCGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCAGATTGgtacttggggagaatgtctaggactattatgcagtgatttgccagcaaca Alignment from Exonerate_protein2genome CTCAGTGTGGAT-GATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGC tgaattccagaatgcaaggcaatggcacgaattttaaaataattttatagCTTGGTGTTGATCGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATCCATCAGATTGgtacttggggagaatgtctaggactattatgcagtgatttgccagcaaca Alignment from Exonerate_coding2genome CTCAGTGTGGAT-GATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGC tgaattccagaatgcaaggcaatggcacgaattttaaaataattttatagCTTGGTGTTGATCGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATCCATCAGATTGgtacttggggagaatgtctaggactattatgcagtgatttgccagcaaca Alignment from GeneWise -CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagaatgcaaggcaatggcacgaattttaaaataattttatagCTTGGTGTTGATCGATCTCCAACTCCAACCACCAGTTTCCTTCCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCAGATTGgtacttggggagaatgtctaggactattatgcagtgatttgccagcaaca #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTG-GAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ctttcttcagccaatatcattgaaggcaattttcctttctgcttccacagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATACGAAGTTGTGGCCCGGGACTATGACAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCAATGgtaagtttgaaacattcatttctgtggggccctaacatttaataactttt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTG-GAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ctttcttcagccaatatcattgaaggcaattttcctttctgcttccacagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATACGAAGTTGTGGCCCGGGACTATGACAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCAATGgtaagtttgaaacattcatttctgtggggccctaacatttaataactttt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTG-GAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ctttcttcagccaatatcattgaaggcaattttcctttctgcttccacagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATAcGAAGTTGTGGCCCGGGACTATGACAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCAATGgtaagtttgaaacattcatttctgtggggccctaacatttaataactttt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTG-GAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ctttcttcagccaatatcattgaaggcaattttcctttctgcttccacagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATACGAAGTTGTGGCCCGGGACTATGACAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCAATGgtaagtttgaaacattcatttctgtggggccctaacatttaataactttt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTG-GAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ctttcttcagccaatatcattgaaggcaattttcctttctgcttccacagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATACGAAGTTGTGGCCCGGGACTATGACAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCAATGgtaagtttgaaacattcatttctgtggggccctaacatttaataactttt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTG-GAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ctttcttcagccaatatcattgaaggcaattttcctttctgcttccacagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATACGAAGTTGTGGCCCGGGACTATGACAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCAATGgtaagtttgaaacattcatttctgtggggccctaacatttaataactttt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTG-GAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ctttcttcagccaatatcattgaaggcaattttcctttctgcttccacagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATACGAAGTTGTGGCCCGGGACTATGACAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCAATGgtaagtttgaaacattcatttctgtggggccctaacatttaataactttt Alignment from GeneWise CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTG-GTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG ctttcttcagccaatatcattgaaggcaattttcctttctgcttccacagCTCTGCCTTACTGAGGCTGCCACAGATGAGTGTAATGTGATACGAAGTTGTGGCCCGGGACTATGACAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCAATGgtaagtttgaaacattcatttctgtggggccctaacatttaataactttt #### Nt5c2_ID10041_12 --> 0 - 0 Original Alignment CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTG-GATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT caaggaacttctggcttccatgagaagatcttatctctcctatttcccagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG---CGATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagagtgaaacaaaatggattaaatagatatgaaccctgatcctcaca Alignment from CESAR CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT caaggaacttctggcttccatgagaagatcttatctctcctatttcccagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG--CGATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagagtgaaacaaaatggattaaatagatatgaaccctgatcctcaca Alignment from Spaln_aa2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT caaggaacttctggcttccatgagaagatcttatctctcctatttcccagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGC--GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagagtgaaacaaaatggattaaatagatatgaaccctgatcctcaca Alignment from Spaln_nt2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT caaggaacttctggcttccatgagaagatcttatctctcctatttcccagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG--CGATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagagtgaaacaaaatggattaaatagatatgaaccctgatcctcaca Alignment from Pairagon CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT caaggaacttctggcttccatgagaagatcttatctctcctatttcccagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG--CGATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagagtgaaacaaaatggattaaatagatatgaaccctgatcctcaca Alignment from Exonerate_protein2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTG-GTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT caaggaacttctggcttccatgagaagatcttatctctcctatttcccagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGC---GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagagtgaaacaaaatggattaaatagatatgaaccctgatcctcaca Alignment from Exonerate_coding2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTG-GTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT caaggaacttctggcttccatgagaagatcttatctctcctatttcccagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGC---GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagagtgaaacaaaatggattaaatagatatgaaccctgatcctcaca Alignment from GeneWise CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT caaggaacttctggcttccatgagaagatcttatctctcctatttcccagCCTGGGAGCTCACACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGC--GATGCTCGGAAACCACTCTTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagagtgaaacaaaatggattaaatagatatgaaccctgatcctcaca #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAG-ACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG gttgctcaacctagagcattaaacattaacaagtacacatatgtttaaagtTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGCACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCTGTGCATGACCGGgtaagtacttcaatagcaaaaccctatcatccagatgactgagatcagct Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAG-ACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG gttgctcaacctagagcattaaacattaacaagtacacatatgtttaaagtTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGCACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCTGTGCATGACCGGgtaagtacttcaatagcaaaaccctatcatccagatgactgagatcagct Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAG-ACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG gttgctcaacctagagcattaaacattaacaagtacacatatgtttaaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGcACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCTGTGCATGACCGGgtaagtacttcaatagcaaaaccctatcatccagatgactgagatcagct Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGT---AATACATACGGCCCTTCGGGAG-ACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG gttgctcaacctagagcattaaacattaacaagtacacatatgtttaaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGCACACAGGAGGAGTTAGACTT---GGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCTGTGCATGACCGGgtaagtacttcaatagcaaaaccctatcatccagatgactgagatcagct Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGA---TGTAATACATACGGCCCTTCGGGAG-ACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG gttgctcaacctagagcattaaacattaacaagtacacatatgtttaaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGCACACAGGAGGAGTTAGACTT---GGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCTGTGCATGACCGGgtaagtacttcaatagcaaaaccctatcatccagatgactgagatcagct Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAG-ACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG gttgctcaacctagagcattaaacattaacaagtacacatatgtttaaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGCACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCTGTGCATGACCGGgtaagtacttcaatagcaaaaccctatcatccagatgactgagatcagct Alignment from Exonerate_coding2genome gttgctcaacctagagcattaaacattaacaagtacacatatgtttaaagtttcccaggtggtaagtgtgaccctgatgaccgagatgttgtaatacacactgcccttcaggagcacacaggaggagttagacttggtacccaaggagcatgtttggggggtgctgcaacctgtgcatgaccgggtaagtacttcaatagcaaaaccctatcatccagatgactgagatcagct Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAG-ACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG gttgctcaacctagagcattaaacattaacaagtacacatatgtttaaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGCACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCTGTGCATGACCGGgtaagtacttcaatagcaaaaccctatcatccagatgactgagatcagct #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagcttatgttggatgaggggtactcttacttgttttttctttcagTTTCACTATGAAAATACACGCCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtgagtagacagctgacattattaaaatgaactgattgtaacaacttttt Alignment from CESAR TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagcttatgttggatgaggggtactcttacttgttttttctttcagTTTCACTATGAAAATACACGCCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtgagtagacagctgacattattaaaatgaactgattgtaacaacttttt Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagcttatgttggatgaggggtactcttacttgttttttctttcagTTTCACTATGAAAATACACGCcACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtgagtagacagctgacattattaaaatgaactgattgtaacaacttttt Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCC-CATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagcttatgttggatgaggggtactcttacttgttttttctttcagTTTCACTATGAAAATACACGCCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtgagtagacagctgacattattaaaatgaactgattgtaacaacttttt Alignment from Pairagon TTTCACTATGAAAATACACG-GGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagcttatgttggatgaggggtactcttacttgttttttctttcagTTTCACTATGAAAATACACGCCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtgagtagacagctgacattattaaaatgaactgattgtaacaacttttt Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagcttatgttggatgaggggtactcttacttgttttttctttcagTTTCACTATGAAAATACACGCCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtgagtagacagctgacattattaaaatgaactgattgtaacaacttttt Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagcttatgttggatgaggggtactcttacttgttttttctttcagTTTCACTATGAAAATACACGCCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtgagtagacagctgacattattaaaatgaactgattgtaacaacttttt Alignment from GeneWise --------------------------------------------------TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG TGAGCAGCTTATGTTGGATGAGGGGTACTCTTACTTGTTTTTTCTTTCAGTTTCACTATGAAAATACACGCCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtgagtagacagctgacattattaaaatgaactgattgtaacaacttttt #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGC-AAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAggtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from CESAR CTGATCATGAGC-AAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAggtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Spaln_aa2Genome GCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagattgtcatgagCCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Spaln_nt2Genome CTGATCATGAGC-AAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Pairagon CTGATCATGAG-CAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Exonerate_protein2genome CTGATCATGAGC-AAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from Exonerate_coding2genome CTGATCATGAGC-AAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagATTGTCATGAGCCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt Alignment from GeneWise --AAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctgaactcacgtcaaagtcatctaaagaggtatgacttccccctgcagattgtcatgagCCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtagtccatgcccagtgatcagattattgaggtgggaggtctgggtcttt #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGC-AGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagatTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGC-AGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagatTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGC-AGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCcAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGC-AGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG C tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattagA Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCG-CAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGC-AGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAGCTA tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAG---gtaagagttctttctctccgttatcatctaatcatgcttacttaatt Alignment from Exonerate_coding2genome tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagatttggtagctcagaacattgttgtcattctaaaccgccaggagctgcatggcagcaactgtccgcaccatcaaggagaatattcctgaggtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAAC-CGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAGCTATTG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGGTAAGAgttctttctctccgttatcatctaatcatgcttacttaattaga #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccag---TTGTCTTTGAATTTGAGCCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAAATCTTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from CESAR CTATTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccag---TTGTCTTTGAATTTGAGCCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAAATCTTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Spaln_aa2Genome GCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagttgtctttgaatttgagCCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAAATCTTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Spaln_nt2Genome TTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagTTGTCTTTGAATTTGAGCCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAAATCTTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Pairagon CTATTGTCTTTGAACTTGAG-CAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccag---TTGTCTTTGAATTTGAGCCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAAATCTTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Exonerate_protein2genome TTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagTTGTCTTTGAATTTGAGCCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAAATCTTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from Exonerate_coding2genome TTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagTTGTCTTTGAATTTGAGCCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAAATCTTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg Alignment from GeneWise GCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgtaatgaataggttaatattagatatctctctctcttccccttccagttgtctttgaatttgagCCAGCAACCGGCTATTCAAGCTGGATGACATGTCAGGCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAAATCTTTCTGGAAAGGAGgtaagtctggcatttaggacaatctttaattagtagtagttgaatggctg #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTTGGAACCGAG-AACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gagagaagagatcacaggtcatatgatttctcatgatattgtgcttttagGGATGTTACTTTGGGGCCAAGCAATTTGAAAAGTCTGGTCCTACACTTCTTGCAAcagtaaaggccccacatgatagtcatcagggtaacaatttgtttatacatat Alignment from CESAR GGAAGCTATTTTGGAACCGAG-AACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gagagaagagatcacaggtcatatgatttctcatgatattgtgcttttagGGATGTTACTTTGGGGCCAAGCAATTTGAAAAGTCTGGTCCTACACTTCTTGCAAcagtaaaggccccacatgatagtcatcagggtaacaatttgtttatacatat Alignment from Spaln_aa2Genome GGAAGCTATTTTGGAACCGAG-AACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcacaggtcatatgatttctcatgatattgtgcttttagGGATGTTACTTTGGGGCCAAGcAATTTGAAAAGTCTGGTCCTACACTTCTTGCAACAgtaaaggccccacatgatagtcatcagggtaacaatttgtttatacatat Alignment from Spaln_nt2Genome GGAAGCTATTTTGGAACCGAG-AACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcacaggtcatatgatttctcatgatattgtgcttttagGGATGTTACTTTGGGGCCAAGCAATTTGAAAAGTCTGGTCCTACACTTCTTGCAACAgtaaaggccccacatgatagtcatcagggtaacaatttgtttatacatat Alignment from Pairagon GGAAGCTATTTTGGAACCGAG-AACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcacaggtcatatgatttctcatgatattgtgcttttagGGATGTTACTTTGGGGCCAAGCAATTTGAAAAGTCTGGTCCTACACTTCTTGCAACAgtaaaggccccacatgatagtcatcagggtaacaatttgtttatacatat Alignment from Exonerate_protein2genome GGAAGCTATTTTGGAACCGAG-AACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagatcacaggtcatatgatttctcatgatattgtgcttttagGGATGTTACTTTGGGGCCAAGCAATTTGAAAAGTCTGGTCCTACACTTCTTGCAACAgtaaaggccccacatgatagtcatcagggtaacaatttgtttatacatat Alignment from Exonerate_coding2genome GGAAGCTATTTTGGAACCGAGAACCTAAAG gagagaagagatcacaggtcatatgatttctcatgatattgtgcttttagggatgttactttggggccaagcaatttgaaaagtctggtcctacacttcttgcaacagtaaaggccccacatgatagTCATCAGGGTAACAATTTGTTTATACATAT Alignment from GeneWise gagagaagagatcacaggtcatatgatttctcatgatattgtgcttttagggatgttactttggggccaagcaatttgaaaagtctggtcctacacttcttgcaacagtaaaggccccacatgatagtcatcagggtaacaatttgtttatacatat #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaatttgtttatacatatctaagggtttgttttgttttttcctctaggTACTTTGTCATTTGTCGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCaggtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from CESAR gTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaatttgtttatacatatctaagggtttgttttgttttttcctctaggTACTTTGTCATTTGTCGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCaggtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Spaln_aa2Genome GTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTcGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Spaln_nt2Genome GTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTCGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Pairagon GTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTCGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Exonerate_protein2genome GTACTATGTAATT-TATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTCGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from Exonerate_coding2genome CTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCAGTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG CAATTTGTTTATA---CATATCTAAGGGTTTGTTTTGTTTTTTCCTCTAGGTACTTTGTCATTTGTCGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac Alignment from GeneWise GTACTATGTAATT-TATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaatttgtttatacatatctaagggtttgttttgttttttcctctagGTACTTTGTCATTTGTCGACTTGGGAGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTCTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaggcgtatatgtcttactctatctggaattgtaaaactccctgccaac #### Nxf1_ID2355_15 --> 1 - 1 Original Alignment aAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagaAAAAACCTAGCGGAATATGTTCAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCagtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from CESAR aAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagaAAAAACCTAGCGGAATATGTTCAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCagtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Spaln_aa2Genome AAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTcAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Spaln_nt2Genome AAAAAACTTAGCTGAATATG-TCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTCAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Pairagon AAAAAACTTAGCTGAATATG-TCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTCAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Exonerate_protein2genome AAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTCAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from Exonerate_coding2genome AAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagAAAAAACCTAGCGGAATATGTTCAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtgagagggctctatgagactccctgggtagagaaatttggagaagaaag Alignment from GeneWise accaccctgtaccataaaattctctgagcagctgctcttttatgcttcagaaaaaacctagcggaatatgttcaaagactgtagaaatgtaaagaagcttaaggaacccagtgagagggctctatgagactccctgggtagagaaatttggagaagaaag #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTT-TCTGTCAATGGAGTCTTCAAGGAAg acaaaagtaattatgagcctctctggtttgagcgctctctctctctgcagAGCACATTACTGTGTCTACTCCTTAAATGGAGTCCTCAAGGAAggtatgctatgatatacattgcatttttgccagtattttgccgtgtctccc Alignment from CESAR AGCACATTACTGTGT-TTTTCTGTCAATGGAGTCTTCAAGGAAg acaaaagtaattatgagcctctctggtttgagcgctctctctctctgcagAGCACATTACTGTGTCTACTCCTTAAATGGAGTCCTCAAGGAAggtatgctatgatatacattgcatttttgccagtattttgccgtgtctccc Alignment from Spaln_aa2Genome CATTACTGTGT---TTTTCTGTCAATGGAGTCTTCAAGGAAG acaaaagtaattatgagcctctctggtttgagcgctctctctctctgcagagCACATTACTGTGTCTACTCCTTAAATGGAGTCCTCAAGGAAGgtatgctatgatatacattgcatttttgccagtattttgccgtgtctccc Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTT-TCTGTCAATGGAGTCTTCAAGGAAG acaaaagtaattatgagcctctctggtttgagcgctctctctctctgcagAGCACATTACTGTGTCTACTCCTTAAATGGAGTCCTCAAGGAAGgtatgctatgatatacattgcatttttgccagtattttgccgtgtctccc Alignment from Pairagon AGCACATTACTGTGTTT-TTCTGTCAATGGAGTCTTCAAGGAAG acaaaagtaattatgagcctctctggtttgagcgctctctctctctgcagAGCACATTACTGTGTCTACTCCTTAAATGGAGTCCTCAAGGAAGgtatgctatgatatacattgcatttttgccagtattttgccgtgtctccc Alignment from Exonerate_protein2genome acaaaagtaattatgagcctctctggtttgagcgctctctctctctgcagagcacattactgtgtctactccttaaatggagtcctcaaggaaggtatgctatgatatacattgcatttttgccagtattttgccgtgtctccc Alignment from Exonerate_coding2genome acaaaagtaattatgagcctctctggtttgagcgctctctctctctgcagagcacattactgtgtctactccttaaatggagtcctcaaggaaggtatgctatgatatacattgcatttttgccagtattttgccgtgtctccc Alignment from GeneWise acaaaagtaattatgagcctctctggtttgagcgctctctctctctgcagagcacattactgtgtctactccttaaatggagtcctcaaggaaggtatgctatgatatacattgcatttttgccagtattttgccgtgtctccc #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagtaGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGTAATACAgggtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagtaGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGTAATACAgggtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAcAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Exonerate_protein2genome TCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgatTTTGCCTTGTAGTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Exonerate_coding2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from GeneWise TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTC-ACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCT-GAAAATTTGGGCCACaa tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTCGAAAACCTGAGCCACaagtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCT-GAAAATTTGGGCCACaa tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTCGAAAACCTGAGCCACaagtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCT-GAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTcGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCT-GAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTCGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCT-GAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTCGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCT-GAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTCGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCT-GAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTCGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCT-GAAAATTTGGGCCACAA tgttgtgagttaagaaccaaaagaaacatttccttttcttttcaccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTCGAAAACCTGAGCCACAAgtagctcctttggtgacaaactgagctatacagggtgtatcttttctgag #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCcAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Pairagon ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGT-CAGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgtggaatcctgggtatagctcttttaaatgctcttctctgtttcaagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAAgtatcgcacccattgcaaaatggcacatgtgaacagtctgggagtctgtt #### Otub1_ID2061_5 --> 1 - 0 Original Alignment gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAG-GGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacaggTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGCGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from CESAR gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAG-GGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacaggTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGCGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Spaln_aa2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAG-GGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGcGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Spaln_nt2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAG-GGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGCGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Pairagon GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAG-GGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGCGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Exonerate_protein2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAG-GGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGCGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from Exonerate_coding2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAG-GGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGCGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc Alignment from GeneWise GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCC-CAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG gctggcatccagtaagattctgctggcacgtgttctctttgtcttcacagGTTTAGAGCGGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGCGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgagtaagctcaccaatacttaacctaagttcactaatacttaaccagc #### Pcgf6_ID10084_3 --> 2 - 2 Original Alignment ttTGTAAAAGCTGCATTGTGAGACATTTTTAC-TATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag tataatattaactaacaaccataaagtaacgcaggcctctgctttcccagttTGTAAAAGCTGCATTGTGAGACATTTTTACCTATAGCAATAGATGCCCAAAATGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAaggtacgaaagtatggacttgatttaatttttcttttatcactgaaagattg Alignment from CESAR ttTGTAAAAGCTGCATTGTGAGACATTTTTAC-TATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag tataatattaactaacaaccataaagtaacgcaggcctctgctttcccagttTGTAAAAGCTGCATTGTGAGACATTTTTACCTATAGCAATAGATGCCCAAAATGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAaggtacgaaagtatggacttgatttaatttttcttttatcactgaaagattg Alignment from Spaln_aa2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTAC-TATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaactaacaaccataaagtaacgcaggcctctgctttcccagTTTGTAAAAGCTGCATTGTGAGACATTTTTACcTATAGCAATAGATGCCCAAAATGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtacgaaagtatggacttgatttaatttttcttttatcactgaaagattg Alignment from Spaln_nt2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTA-CTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaactaacaaccataaagtaacgcaggcctctgctttcccagTTTGTAAAAGCTGCATTGTGAGACATTTTTACCTATAGCAATAGATGCCCAAAATGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtacgaaagtatggacttgatttaatttttcttttatcactgaaagattg Alignment from Pairagon TTTGTAAAAGCTGCATTGTGAGACATTTTTA-CTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaactaacaaccataaagtaacgcaggcctctgctttcccagTTTGTAAAAGCTGCATTGTGAGACATTTTTACCTATAGCAATAGATGCCCAAAATGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtacgaaagtatggacttgatttaatttttcttttatcactgaaagattg Alignment from Exonerate_protein2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTAC-TATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaactaacaaccataaagtaacgcaggcctctgctttcccagTTTGTAAAAGCTGCATTGTGAGACATTTTTACCTATAGCAATAGATGCCCAAAATGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtacgaaagtatggacttgatttaatttttcttttatcactgaaagattg Alignment from Exonerate_coding2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTAC-TATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaactaacaaccataaagtaacgcaggcctctgctttcccagTTTGTAAAAGCTGCATTGTGAGACATTTTTACCTATAGCAATAGATGCCCAAAATGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtacgaaagtatggacttgatttaatttttcttttatcactgaaagattg Alignment from GeneWise TTTGTAAAAGCTGCATTGTGAGACATTTTTAC-TATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG tataatattaactaacaaccataaagtaacgcaggcctctgctttcccagTTTGTAAAAGCTGCATTGTGAGACATTTTTACCTATAGCAATAGATGCCCAAAATGCAACATAGTTGTCCACCAAACTCAGCCTCTTTATAATATAAGgtacgaaagtatggacttgatttaatttttcttttatcactgaaagattg #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTT-CGTGGCCTTGAGTTCCGGg aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacaggaGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCCATGGCCTCAAGTTCCGGggtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAG-CTTCGTGGCCTTGAGTTCCGGg aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacaggaGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCCATGGCCTCAAGTTCCGGggtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAG-CTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGcCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCG-TGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAG-CTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAG-CTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAG-CTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAG-CTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTG-GTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgaagcaatctgggcagtcactgtcacccttttctgtaatttttatcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGCGTGATCGCTGTGCTCATCTTTGCCGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtgcgtgcagcatggagcagcctagatagatctgctgctatcttggttat Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTG-GTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgaagcaatctgggcagtcactgtcacccttttctgtaatttttatcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGCGTGATCGCTGTGCTCATCTTTGCCGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtgcgtgcagcatggagcagcctagatagatctgctgctatcttggttat Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTG-GTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgaagcaatctgggcagtcactgtcacccttttctgtaatttttatcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGcGTGATCGCTGTGCTCATCTTTGCCGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtgcgtgcagcatggagcagcctagatagatctgctgctatcttggttat Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTG-GTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgaagcaatctgggcagtcactgtcacccttttctgtaatttttatcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGCGTGATCGCTGTGCTCATCTTTGCCGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtgcgtgcagcatggagcagcctagatagatctgctgctatcttggttat Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTG-GTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgaagcaatctgggcagtcactgtcacccttttctgtaatttttatcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGCGTGATCGCTGTGCTCATCTTTGCCGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtgcgtgcagcatggagcagcctagatagatctgctgctatcttggttat Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTG-GTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgaagcaatctgggcagtcactgtcacccttttctgtaatttttatcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGCGTGATCGCTGTGCTCATCTTTGCCGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtgcgtgcagcatggagcagcctagatagatctgctgctatcttggttat Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTG-GTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgaagcaatctgggcagtcactgtcacccttttctgtaatttttatcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGCGTGATCGCTGTGCTCATCTTTGCCGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtgcgtgcagcatggagcagcctagatagatctgctgctatcttggttat Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTG-GTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgaagcaatctgggcagtcactgtcacccttttctgtaatttttatcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGCGTGATCGCTGTGCTCATCTTTGCCGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtgcgtgcagcatggagcagcctagatagatctgctgctatcttggttat #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTggtagaccagttcaagatactttcacccctctctcttacagtaTTCACCTT Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTggtagaccagttcaagatacacttatgttttctttgtttagtaTTCACCTT Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCcTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatactttcacccctctctcttacagTATTCACCTT Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTT-CTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatactttcacccctctctcttacagTATTCACCTT Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTT-CTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatactttcacccctctctcttacagTATTCACCTT Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatactttcacccctctctcttacagTATTCACCTT Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatactttcacccctctctcttacagTATTCACCTT Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatactttcacccctctctcttacagTATTCACCTT #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCTGATGCAGCA-TCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTGATGCAGCACTCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from CESAR AGCGTGCAGCCTGATGCAGCA-TCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTGATGCAGCACTCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTGATGCAGCA---CTCACCCATgcatgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Spaln_nt2Genome AGCGTGCAGCCTGATGCAGCA-TCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTGATGCAGCACTCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Pairagon AGCGTGCAGCCTGATGCAGCA-TCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTGATGCAGCACTCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Exonerate_protein2genome AGCGTGCAGCCTGATGCAGCA-TCCCCAATGCAC atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagAGCATCCAACCTGATGCAGCACTCACCCATGCATgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from Exonerate_coding2genome atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagagcatccaacctgatgcagcactcacccatgcatgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac Alignment from GeneWise atgggccttaatactataccccgccaacttaggtgtgtggttccttgcagagcatccaacctgatgcagcactcacccatgcatgtagggatgtgaaggaattgctgggcaatgagcactggttctaaaagcac #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATG-CTGAAGCTCAGCTCCCAAGAGAAACTGa ccatgattgggagaaagccagttagaataatataaatgtttgctttgtagacATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACATCTGCGGGCCGTGAAATGCCTGAGGCTCAGCTCCAAGGAGAAACTCagtgagaggaaatctggcaggctccttttaaaagtagaacatctttaaaag Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATG-CTGAAGCTCAGCTCCCAAGAGAAACTGa ccatgattgggagaaagccagttagaataatataaatgtttgctttgtagacATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACATCTGCGGGCCGTGAAATGCCTGAGGCTCAGCTCCAAGGAGAAACTCagtgagaggaaatctggcaggctccttttaaaagtagaacatctttaaaag Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATG-CTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattgggagaaagccagttagaataatataaatgtttgctttgtagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACATCTGCGGGCCGTGAAATGcCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagaggaaatctggcaggctccttttaaaagtagaacatctttaaaag Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGC-TGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattgggagaaagccagttagaataatataaatgtttgctttgtagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACATCTGCGGGCCGTGAAATGCCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagaggaaatctggcaggctccttttaaaagtagaacatctttaaaag Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATG-CTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattgggagaaagccagttagaataatataaatgtttgctttgtagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACATCTGCGGGCCGTGAAATGCCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagaggaaatctggcaggctccttttaaaagtagaacatctttaaaag Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATG-CTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattgggagaaagccagttagaataatataaatgtttgctttgtagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACATCTGCGGGCCGTGAAATGCCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagaggaaatctggcaggctccttttaaaagtagaacatctttaaaag Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATG-CTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattgggagaaagccagttagaataatataaatgtttgctttgtagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACATCTGCGGGCCGTGAAATGCCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagaggaaatctggcaggctccttttaaaagtagaacatctttaaaag Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATG-CTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattgggagaaagccagttagaataatataaatgtttgctttgtagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACATCTGCGGGCCGTGAAATGCCTGAGGCTCAGCTCCAAGGAGAAACTCAgtgagaggaaatctggcaggctccttttaaaagtagaacatctttaaaag #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTG-GAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcaggGATCCTGGTGTACGAGACTACAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from CESAR gGACCCTGGTGTG-GAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcaggGATCCTGGTGTACGAGACTACAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Spaln_aa2Genome GGACCCTGGTGTG-GAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTAcGAGACTACAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Spaln_nt2Genome GGACCCTGGTGTG-GAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTACGAGACTACAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Pairagon GGACCCTGGTGTG-GAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTACGAGACTACAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Exonerate_protein2genome GGACCCTGGTGTG-GAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTACGAGACTACAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from Exonerate_coding2genome aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagggatcctggtgtacgagactacagtatttcagaaagttagttccttgcctcctgtacactgcagtttccagcgctctgaagtaggatttaaccatgtgtcagtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg Alignment from GeneWise --GACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaggataggaacctaactagagcgtcaatctccatgcagGGATCCTGGTGTACGAGACTACAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTACACTGCAGTTTCCAGCGCTCTGAAGTAGGATTTAACCATGTGTCAgtaggagggctcctactcttgctgtcatcaatgtctgccacaggtgttgg #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tctggtgaacaatactttgtgaagggtttttttttttttttaatttgtagGTCCCACCTCCCAGTCTCATGGTGGCCGGACGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCCCAGGGGGAAAGCAGTCTCCCCaggtaagttgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tctggtgaacaatactttgtgaagggtttttttttttttttaatttgtagGTCCCACCTCCCAGTCTCATGGTGGCCGGACGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCCCAGGGGGAAAGCAGTCTCCCCaggtaagttgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactttgtgaagggtttttttttttttttaatttgtagGTCCCACCTCCCAGTCTCATGGTGGCCGGAcGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagttgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactttgtgaagggtttttttttttttttaatttgtagGTCCCACCTCCCAGTCTCATGGTGGCCGGACGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagttgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactttgtgaagggtttttttttttttttaatttgtagGTCCCACCTCCCAGTCTCATGGTGGCCGGACGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagttgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactttgtgaagggtttttttttttttttaatttgtagGTCCCACCTCCCAGTCTCATGGTGGCCGGACGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagttgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactttgtgaagggtttttttttttttttaatttgtagGTCCCACCTCCCAGTCTCATGGTGGCCGGACGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagttgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactttgtgaagggtttttttttttttttaatttgtagGTCCCACCTCCCAGTCTCATGGTGGCCGGACGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagttgtaatcccaggctatgtcaaagtcagatgttgctatgaactta #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTC-ATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gattaaagaaagtgaagaacatgagtagctgatcttgtcttcctaattagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGGTTTCTCTCAGAGCAGGCTGATTTTGCCCAGGCCTGCCAGGACACTGGGGTCCGATTTCATTGGTCCGAGCCCAGAGGTTGTACTTAAAATA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAggtaggttaagaaacaaaacattgaacctggaagtacaggcattttgtgtt Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGG-TTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gattaaagaaagtgaagaacatgagtagctgatcttgtcttcctaattagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGGTTTCTCTCAGAGCAGGCTGATTTTGCCCAGGCCTGCCAGGACACTGGGGTCCGATTTCATTGGTCCGAGCCCAGAGGTTGTACTTAAAATA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAggtaggttaagaaacaaaacattgaacctggaagtacaggcattttgaccc Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTC-ATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagaaagtgaagaacatgagtagctgatcttgtcttcctaattagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGGTTTCTCTCAGAGCAGGCTGATTTTGCCCAGGCCTGCCAGGACACTGGGGTCCGATTTcATTGGTCCGAGCCCAGAGGTTGTACTTAAAATA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaagaaacaaaacattgaacctggaagtacaggcattttgtgtt Alignment from Spaln_nt2Genome gattaaagaaagtgaagaacatgagtagctgatcttgtcttcctaattaggaaaatggtgaagatgcagtgcatccaggctatgggtttctctcagagcaggctgattttgcccaggcctgccaggacactggggtccgatttcattggtccgagcccagaggttgtacttaaaatagacagggtagaagcccaggctgttgccatagatgcaggtaggttaagaaacaaaacattgaacctggaagtacaggcattttgtgtt Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGG-TTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagaaagtgaagaacatgagtagctgatcttgtcttcctaattagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGGTTTCTCTCAGAGCAGGCTGATTTTGCCCAGGCCTGCCAGGACACTGGGGTCCGATTTCATTGGTCCGAGCCCAGAGGTTGTACTTAAAAT---AGACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaagaaacaaaacattgaacctggaagtacaggcattttgtgtt Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGG-TTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagaaagtgaagaacatgagtagctgatcttgtcttcctaattagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGGTTTCTCTCAGAGCAGGCTGATTTTGCCCAGGCCTGCCAGGACACTGGGGTCCGATTTCATTGGTCCGAGCCCAGAGGTTGTACTTAAAATA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaagaaacaaaacattgaacctggaagtacaggcattttgtgtt Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGG-TTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagaaagtgaagaacatgagtagctgatcttgtcttcctaattagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGGTTTCTCTCAGAGCAGGCTGATTTTGCCCAGGCCTGCCAGGACACTGGGGTCCGATTTCATTGGTCCGAGCCCAGAGGTTGTACTTAAAATA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaagaaacaaaacattgaacctggaagtacaggcattttgtgtt Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTC-ATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagaaagtgaagaacatgagtagctgatcttgtcttcctaattagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGGTTTCTCTCAGAGCAGGCTGATTTTGCCCAGGCCTGCCAGGACACTGGGGTCCGATTTCATTGGTCCGAGCCCAGAGGTTGTACTTAAAATA---GACAGGGTAGAAGCCCAGGCTGTTGCCATAGATGCAGgtaggttaagaaacaaaacattgaacctggaagtacaggcattttgtgtt #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAG-TTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGCTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAG-TTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGCTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAG-TTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGcTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Spaln_nt2Genome tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacaggagctagagaagaattatacccgagcctactctgaagccttggcggcttttgggaacagagccctgtttgtcgagaagctttattggacagccaagccattttgaggtgcagatcctaggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAG-TTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGCTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAG-TTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGCTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAG-TTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGCTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAG-AAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGCTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACTCCA-ATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg ctctttggaatcccagaagccagcgtggttgcttttgtgtctttttttaggaCATGTTATGGTCAATGGCCCTATCACACCACATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCGGCAGTCCCTATAggtaagatatggtacctgtttgtatcttaatgagaaggtgtgtcagatgat Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCA-ATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg ctctttggaatcccagaagccagcgtggttgcttttgtgtctttttttaggaCATGTTATGGTCAATGGCCCTATCACACCACATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCGGCAGTCCCTATAggtaagatatggtacctgtttgtatcttaatgagaaggtgtgtcagatgat Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCA-ATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG ctctttggaatcccagaagccagcgtggttgcttttgtgtctttttttagGACATGTTATGGTCAATGGCCCTATCACACCAcATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCGGCAGTCCCTATAGgtaagatatggtacctgtttgtatcttaatgagaaggtgtgtcagatgat Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCA-ATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG ctctttggaatcccagaagccagcgtggttgcttttgtgtctttttttagGACATGTTATGGTCAATGGCCCTATCACACCACATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCGGCAGTCCCTATAGgtaagatatggtacctgtttgtatcttaatgagaaggtgtgtcagatgat Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCA-ATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG ctctttggaatcccagaagccagcgtggttgcttttgtgtctttttttagGACATGTTATGGTCAATGGCCCTATCACACCACATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCGGCAGTCCCTATAGgtaagatatggtacctgtttgtatcttaatgagaaggtgtgtcagatgat Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCA-ATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG ctctttggaatcccagaagccagcgtggttgcttttgtgtctttttttagGACATGTTATGGTCAATGGCCCTATCACACCACATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCGGCAGTCCCTATAGgtaagatatggtacctgtttgtatcttaatgagaaggtgtgtcagatgat Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCA-ATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG ctctttggaatcccagaagccagcgtggttgcttttgtgtctttttttagGACATGTTATGGTCAATGGCCCTATCACACCACATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCGGCAGTCCCTATAGgtaagatatggtacctgtttgtatcttaatgagaaggtgtgtcagatgat Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCA-ATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG ctctttggaatcccagaagccagcgtggttgcttttgtgtctttttttagGACATGTTATGGTCAATGGCCCTATCACACCACATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCGGCAGTCCCTATAGgtaagatatggtacctgtttgtatcttaatgagaaggtgtgtcagatgat #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTA-GCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataagagtcagaaatgtgtcctttttaaaaatatttttgcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCTGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATTTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTACGCTGAAGAACTGGTACGAGCTGGATCTCACATATTGTGTATTAAGgtgagcgggctattcagtgtgtctcaatcttttgatcatagctcccctcc Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTA-GCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataagagtcagaaatgtgtcctttttaaaaatatttttgcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCTGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATTTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTACGCTGAAGAACTGGTACGAGCTGGATCTCACATATTGTGTATTAAGgtgagcgggctattcagtgtgtctcaatcttttgatcatagctctgttct Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTA-GCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataagagtcagaaatgtgtcctttttaaaaatatttttgcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCTGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATTTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAcGCTGAAGAACTGGTACGAGCTGGATCTCACATATTGTGTATTAAGgtgagcgggctattcagtgtgtctcaatcttttgatcatagctcccctcc Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTA-GCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataagagtcagaaatgtgtcctttttaaaaatatttttgcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCTGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATTTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTACGCTGAAGAACTGGTACGAGCTGGATCTCACATATTGTGTATTAAGgtgagcgggctattcagtgtgtctcaatcttttgatcatagctcccctcc Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTA-GCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataagagtcagaaatgtgtcctttttaaaaatatttttgcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCTGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATTTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTACGCTGAAGAACTGGTACGAGCTGGATCTCACATATTGTGTATTAAGgtgagcgggctattcagtgtgtctcaatcttttgatcatagctcccctcc Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTA-GCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataagagtcagaaatgtgtcctttttaaaaatatttttgcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCTGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATTTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTACGCTGAAGAACTGGTACGAGCTGGATCTCACATATTGTGTATTAAGgtgagcgggctattcagtgtgtctcaatcttttgatcatagctcccctcc Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTA-GCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataagagtcagaaatgtgtcctttttaaaaatatttttgcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCTGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATTTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTACGCTGAAGAACTGGTACGAGCTGGATCTCACATATTGTGTATTAAGgtgagcgggctattcagtgtgtctcaatcttttgatcatagctcccctcc Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTA-GCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataagagtcagaaatgtgtcctttttaaaaatatttttgcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCTGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATTTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTACGCTGAAGAACTGGTACGAGCTGGATCTCACATATTGTGTATTAAGgtgagcgggctattcagtgtgtctcaatcttttgatcatagctcccctcc #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTCGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtctttttgtctgcctgtctg Alignment from CESAR GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTCGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtcttttgagtatacggccac Alignment from Spaln_aa2Genome GATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcaggtgaagtcatcttccaagATTCGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtctttttgtctgcctgtctg Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTCGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtctttttgtctgcctgtctg Alignment from Pairagon GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTA---------------------------------------------------- ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcagGTGAAGTCATCTTCCAAGATTCGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAGTGATGTAGGTTGGTCAGGGTGTAAATCAGTCTTTTTGTCTGCCTGTCTG Alignment from Exonerate_protein2genome GATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcaggtgaagtcatcttccaagATTCGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtctttttgtctgcctgtctg Alignment from Exonerate_coding2genome GATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcaggtgaagtcatcttccaagATTCGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtctttttgtctgcctgtctg Alignment from GeneWise GATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ctatctatggtggttacctgacaagcctctgttgatgtctgtctctgcaggtgaagtcatcttccaagATTCGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGATCAAGTCGGACTGAGACAGAAGCTCAGGCAGAGGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCCAAGCCATTTCATTCTAAAgtgatgtaggttggtcagggtgtaaatcagtctttttgtctgcctgtctg #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagaTCAATTATTGCAGCTCCATTCCTTAGACTATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagaTCAATTATTGCAGCTCCATTCCTTAGACTATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGAcTATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Exonerate_coding2genome ATCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTT-AGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag #### Pdcd11_ID10120_14 --> 0 - 0 Original Alignment TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTC-CAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from CESAR TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTC-CAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Spaln_aa2Genome TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTC-CAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTcCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Spaln_nt2Genome TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCT-CCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAA------TGCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Pairagon TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGC-TCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAA------TGCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Exonerate_protein2genome TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTC-CAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Exonerate_coding2genome TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTC-CAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from GeneWise TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGG-CTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAG-GTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg aaccccatgctcactaacaaatctttgtggtttttctcttcaccttccagGTTCTCAAACACCCAGACAGAAAGTTCCAACGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCGGAAGTCCCCAGGGCTTTTTTATGTCTGTCACTCATTggtcagtattaatttgggttatgccagaatgagactgtgtgggagtttttt Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAG-GTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg aaccccatgctcactaacaaatctttgtggtttttctcttcaccttccagGTTCTCAAACACCCAGACAGAAAGTTCCAACGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCGGAAGTCCCCAGGGCTTTTTTATGTCTGTCACTCATTggtcagtattaatttgggttatgccagaatgagactgtgtgggagtttttt Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAG-GTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacaaatctttgtggtttttctcttcaccttccagGTTCTCAAACACCCAGACAGAAAGTTCCAAcGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCGGAAGTCCCCAGGGCTTTTTTATGTCTGTCACTCATTGgtcagtattaatttgggttatgccagaatgagactgtgtgggagtttttt Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAG-GTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacaaatctttgtggtttttctcttcaccttccagGTTCTCAAACACCCAGACAGAAAGTTCCAACGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCGGAAGTCCCCAGGGCTTTTTTATGTCTGTCACTCATTGgtcagtattaatttgggttatgccagaatgagactgtgtgggagtttttt Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAG-GTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacaaatctttgtggtttttctcttcaccttccagGTTCTCAAACACCCAGACAGAAAGTTCCAACGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCGGAAGTCCCCAGGGCTTTTTTATGTCTGTCACTCATTGgtcagtattaatttgggttatgccagaatgagactgtgtgggagtttttt Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAG-GTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacaaatctttgtggtttttctcttcaccttccagGTTCTCAAACACCCAGACAGAAAGTTCCAACGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCGGAAGTCCCCAGGGCTTTTTTATGTCTGTCACTCATTGgtcagtattaatttgggttatgccagaatgagactgtgtgggagtttttt Alignment from Exonerate_coding2genome aaccccatgctcactaacaaatctttgtggtttttctcttcaccttccaggttctcaaacacccagacagaaagttccaacgtagggcaggccattgaggccacagttgttgacccggaagtccccagggcttttttatgtctgtcactcattggtcagtattaatttgggttatgccagaatgagactgtgtgggagtttttt Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAG-GTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacaaatctttgtggtttttctcttcaccttccagGTTCTCAAACACCCAGACAGAAAGTTCCAACGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCGGAAGTCCCCAGGGCTTTTTTATGTCTGTCACTCATTGgtcagtattaatttgggttatgccagaatgagactgtgtgggagtttttt #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAG-GAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagcATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATCGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAG-GAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagcATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATCGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAG-GAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATcGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAG-GAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATCGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGA-GGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATCGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAG-GAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATCGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from Exonerate_coding2genome ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagcatcaaccccatgaagaacctgatagagttgtccctccttccaagtgacactgggaggcaagatgtttcccctcctgccccagaaccagaacaagaggaaggtagcggaggggctgaagggggccaaaaacagaaggaaaagaatcagaagagacgggatcgagaaggaagagccacagaagtcacagaggggtgggcgaggaaagcgtgagcatcatgaatctgagagtgagcaggtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGG-GAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgtcaagacaccctattcgccccttaacaagtcccactgcccgcagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCAGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAAAAGAATCAGAAGAGACGGGATCGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtatggcaggcagtatgtattgcctcttcttatgggacacatttgctgct #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTT-TGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTT-TGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTT-TGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCcTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTT-TGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCT-TTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTT-TGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Exonerate_coding2genome gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcaggggaagaagacaaagtctacggaagtgtctcgtctgcacctctcttcaggttttctcctgggatgtgggacttgattctctaaccccgtccttgccactccgggaagaaagctcagacagtgaggatgagcagccacaccaggctaaggtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTC-CTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGG-AGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc gcaatgcaagtaatgttctaagaaagggcctcccttcttttctgtcccagGAAGCCGGAGAGCTGTATAACCGCATGATCAAACGGTTCCAGGAAAAGGACGCGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGACAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAAGAAcgtatgatctcttgtaacgaccgaactttatggttctggcacctgatccca Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAG---GCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGG-AGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc gcaatgcaagtaatgttctaagaaagggcctcccttcttttctgtcccagGAAGCCGGAGAGCTGTATAACCGCATGATCAAACGGTTC---CAGGAAAAGGACGCGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGACAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAAGAAcgtatgatctcttgtaacgaccgaactttatggttctggcacctgatccca Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGG-AGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC gcaatgcaagtaatgttctaagaaagggcctcccttcttttctgtcccagGAAGCCGGAGAGCTGTATAACCGCATGATCAAACGGTTCCAGGAAAAGGACGCGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAcAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAAGAACgtatgatctcttgtaacgaccgaactttatggttctggcacctgatccca Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGG-AGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC gcaatgcaagtaatgttctaagaaagggcctcccttcttttctgtcccagGAAGCCGGAGAGCTGTATAACCGCATGATCAAACGGTTCCAGGAAAAGGACGCGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGACAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAAGAACgtatgatctcttgtaacgaccgaactttatggttctggcacctgatccca Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGG-AGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC gcaatgcaagtaatgttctaagaaagggcctcccttcttttctgtcccagGAAGCCGGAGAGCTGTATAACCGCATGATCAAACGGTTCCAGGAAAAGGACGCGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGACAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAAGAACgtatgatctcttgtaacgaccgaactttatggttctggcacctgatccca Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGG-AGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC gcaatgcaagtaatgttctaagaaagggcctcccttcttttctgtcccagGAAGCCGGAGAGCTGTATAACCGCATGATCAAACGGTTCCAGGAAAAGGACGCGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGACAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAAGAACgtatgatctcttgtaacgaccgaactttatggttctggcacctgatccca Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGG-AGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC gcaatgcaagtaatgttctaagaaagggcctcccttcttttctgtcccagGAAGCCGGAGAGCTGTATAACCGCATGATCAAACGGTTCCAGGAAAAGGACGCGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGACAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAAGAACgtatgatctcttgtaacgaccgaactttatggttctggcacctgatccca Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGG-AGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC gcaatgcaagtaatgttctaagaaagggcctcccttcttttctgtcccagGAAGCCGGAGAGCTGTATAACCGCATGATCAAACGGTTCCAGGAAAAGGACGCGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGACAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAAGAACgtatgatctcttgtaacgaccgaactttatggttctggcacctgatccca #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAG-TTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagatGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGCTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAG-TTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagatGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGCTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAG-TTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGcTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAG-TTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGCTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAG-TTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGCTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAG-TTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGCTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from Exonerate_coding2genome ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagatgtggatgtgattgttaagtttgcccagttggagcttccaacttggggatgtgaagcgagctaaagccatttttgaaaacacactgagtgcctaccccaaacgcacggatgtctggtcagtctacattcacatgaccatcaagcatggcagccatacagcagtcaggtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTG-GAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG ctgctctgatcagcctcttttggggtctttttaacttgcttgttttttagATGTGGATGTGATTGTTAAGTTTGCCCAGTTGGAGCTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgtgtgtaaccgacagggataattgcaatggaacaagtggtaggaggtg #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCT-ACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTCACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCT-ACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTCACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCT-ACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTcACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCT-ACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTCACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCT-ACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTCACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCT-ACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTCACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCT-ACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTCACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCT-TCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTCACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAG-ACCATGTTCACTTTGTTAATG tagtgttgcgtgtccccccaagtaatgagggtctgcctgtctttcctcagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACGTACCACAATTGGCGGCATGGGTCAAATGTGGGGTATCACGATATCTCCTTTGTTAATGgtatgtttagctgttgataggctgaacgttatcctcctactaagcgccag Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAG-ACCATGTTCACTTTGTTAATG tagtgttgcgtgtccccccaagtaatgagggtctgcctgtctttcctcagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACGTACCACAATTGGCGGCATGGGTCAAATGTGGGGTATCACGATATCTCCTTTGTTAATGgtatgtttagctgttgataggctgaacgttatcctcctactaagcgccag Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATGACAG tagtgttgcgtgtccccccaagtaatgagggtctgcctgtctttcctcagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACGTACCACAATTGGCGGCATGGGTCAAATGTGGGGTATCACGATATCTCC---TTTGTTAATGgtatgtttagctgttgataggctgaacgttatcctcctactaagcgccag Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAG-ACCATGTTCACTTTGTTAATG tagtgttgcgtgtccccccaagtaatgagggtctgcctgtctttcctcagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACGTACCACAATTGGCGGCATGGGTCAAATGTGGGGTATCACGATATCTCCTTTGTTAATGgtatgtttagctgttgataggctgaacgttatcctcctactaagcgccag Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCA---------CTTTGTTAATG tagtgttgcgtgtccccccaagtaatgagggtctgcctgtctttcctcagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACGTACCACAATTGGCGGCATGGGTCAAATGTGGGGTA--------TCACGATATCTCCTTTGTTAATGgtatgtttagctgttgataggctgaacgttatcctcctactaagcgccag Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAG-ACCATGTTCACTTTGTTAATG tagtgttgcgtgtccccccaagtaatgagggtctgcctgtctttcctcagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACGTACCACAATTGGCGGCATGGGTCAAATGTGGGGTATCACGATATCTCCTTTGTTAATGgtatgtttagctgttgataggctgaacgttatcctcctactaagcgccag Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAG-ACCATGTTCACTTTGTTAATG tagtgttgcgtgtccccccaagtaatgagggtctgcctgtctttcctcagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACGTACCACAATTGGCGGCATGGGTCAAATGTGGGGTATCACGATATCTCCTTTGTTAATGgtatgtttagctgttgataggctgaacgttatcctcctactaagcgccag Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgcgtgtccccccaagtaatgagggtctgcctgtctttcctcagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACGTACCACAATTGGCGGCATGGGTCAAATGTGGGG------TATCACGATATCTCCTTTgttaatggtatgtttagctgttgataggctgaacgttatcctcctactaagcgccag #### Pga5_ID2971_7 --> 1 - 0 Original Alignment cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTG-ACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagcAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGCACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from CESAR cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTG-ACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagcAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGCACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Spaln_aa2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTG-ACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGcACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Spaln_nt2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTG-ACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGCACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Pairagon CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTG-ACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGCACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Exonerate_protein2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTG-ACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGCACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Exonerate_coding2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTG-ACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGCACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from GeneWise CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTG-CTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG------ atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGCACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGGCAAGGgtttaaaaggttaaggtaatgggcggcccactctaggcctcctg #### Pga5_ID2972_6 --> 1 - 2 Original Alignment cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCC-TCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacactttgaagtcctccagagattctgctcttgctcttcccctcagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGTGGATaggtaacccataggtgcttctcgcccacaggccctatctcagcagcatgcat Alignment from CESAR cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGAT-CCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacactttgaagtcctccagagattctgctcttgctcttcccctcagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGTGGATaggtaacccataggtgcttctcgcccacaggccctatctcagcagcatgcat Alignment from Spaln_aa2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCC-TCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtcctccagagattctgctcttgctcttcccctcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCcTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGTGGATAGgtaacccataggtgcttctcgcccacaggccctatctcagcagcatgcat Alignment from Spaln_nt2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGAT-CCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtcctccagagattctgctcttgctcttcccctcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGTGGATAGgtaacccataggtgcttctcgcccacaggccctatctcagcagcatgcat Alignment from Pairagon CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGAT-CCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtcctccagagattctgctcttgctcttcccctcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGTGGATAGgtaacccataggtgcttctcgcccacaggccctatctcagcagcatgcat Alignment from Exonerate_protein2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGAT-CCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtcctccagagattctgctcttgctcttcccctcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGTGGATAGgtaacccataggtgcttctcgcccacaggccctatctcagcagcatgcat Alignment from Exonerate_coding2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGAT-CCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtcctccagagattctgctcttgctcttcccctcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGTGGATAGgtaacccataggtgcttctcgcccacaggccctatctcagcagcatgcat Alignment from GeneWise CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCC-TCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtcctccagagattctgctcttgctcttcccctcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGTGGATAGgtaacccataggtgcttctcgcccacaggccctatctcagcagcatgcat #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAG-CAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacaggtggggtcaacatatgctcttgttgaccgtctgtgctgtctgcagGGACTGGATGGGGCTGGGGACCTAGTCGTTGAAGCATGCTCTGTGCATGACCTTTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCCAAGCCGATGTCCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTCCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCaagtatgggcagagaggaatagtaaacagacatgaacagagcaaataatgat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAG-CAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacaggtggggtcaacatatgctcttgttgaccgtctgtgctgtctgcagGGACTGGATGGGGCTGGGGACCTAGTCGTTGAAGCATGCTCTGTGCATGACCTTTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCCAAGCCGATGTCCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTCCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCaagtatgggcagagaggaatagtaaacagacatgaacagagcaaataatgat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAG-CAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacaggtggggtcaacatatgctcttgttgaccgtctgtgctgtctgcagGGACTGGATGGGGCTGGGGACCTAGTCGTTGAAGCATGCTCTGTGCATGACCTTTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGcCAAGCCGATGTCCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTCCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtatgggcagagaggaatagtaaacagacatgaacagagcaaataatgat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGC-AGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacaggtggggtcaacatatgctcttgttgaccgtctgtgctgtctgcagGGACTGGATGGGGCTGGGGACCTAGTCGTTGAAGCATGCTCTGTGCATGACCTTTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCCAAGCCGATGTCCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTCCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtatgggcagagaggaatagtaaacagacatgaacagagcaaataatgat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAG-CAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacaggtggggtcaacatatgctcttgttgaccgtctgtgctgtctgcagGGACTGGATGGGGCTGGGGACCTAGTCGTTGAAGCATGCTCTGTGCATGACCTTTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCCAAGCCGATGTCCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTCCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtatgggcagagaggaatagtaaacagacatgaacagagcaaataatgat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAG-CAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacaggtggggtcaacatatgctcttgttgaccgtctgtgctgtctgcagGGACTGGATGGGGCTGGGGACCTAGTCGTTGAAGCATGCTCTGTGCATGACCTTTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCCAAGCCGATGTCCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTCCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtatgggcagagaggaatagtaaacagacatgaacagagcaaataatgat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAG-CAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacaggtggggtcaacatatgctcttgttgaccgtctgtgctgtctgcagGGACTGGATGGGGCTGGGGACCTAGTCGTTGAAGCATGCTCTGTGCATGACCTTTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCCAAGCCGATGTCCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTCCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtatgggcagagaggaatagtaaacagacatgaacagagcaaataatgat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCC-AAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacaggtggggtcaacatatgctcttgttgaccgtctgtgctgtctgcagGGACTGGATGGGGCTGGGGACCTAGTCGTTGAAGCATGCTCTGTGCATGACCTTTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCCAAGCCGATGTCCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTCCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtatgggcagagaggaatagtaaacagacatgaacagagcaaataatgat #### Pitpnm1_ID316_13 --> 1 - 1 Original Alignment cCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCT-CTTCGCAAAACCGTGATGCCCGCCTTGGAGg cagtcctaacacaaaaaccagggcttacccgcctcctctcctgttcacagcCTGCAGTTAGCGGCAACAGCAACCTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCAGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGTTGGCTCCTTCGAAAAACTGTGATGTCTGCCTTGGAGggtactgattaatgctctcagtcatcatgtccctcatccacctctgctaat Alignment from CESAR cCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCT-CTTCGCAAAACCGTGATGCCCGCCTTGGAGg cagtcctaacacaaaaaccagggcttacccgcctcctctcctgttcacagcCTGCAGTTAGCGGCAACAGCAACCTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCAGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGTTGGCTCCTTCGAAAAACTGTGATGTCTGCCTTGGAGggtactgattaatgctctcagtcatcatgtccctcatccacctctgctaat Alignment from Spaln_aa2Genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCT-CTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaacacaaaaaccagggcttacccgcctcctctcctgttcacagCCTGCAGTTAGCGGCAACAGCAACCTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCAGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGTTGGCTcCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtactgattaatgctctcagtcatcatgtccctcatccacctctgctaat Alignment from Spaln_nt2Genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTC-TTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaacacaaaaaccagggcttacccgcctcctctcctgttcacagCCTGCAGTTAGCGGCAACAGCAACCTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCAGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGTTGGCTCCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtactgattaatgctctcagtcatcatgtccctcatccacctctgctaat Alignment from Pairagon CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCT-CTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaacacaaaaaccagggcttacccgcctcctctcctgttcacagCCTGCAGTTAGCGGCAACAGCAACCTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCAGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGTTGGCTCCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtactgattaatgctctcagtcatcatgtccctcatccacctctgctaat Alignment from Exonerate_protein2genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCT-CTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaacacaaaaaccagggcttacccgcctcctctcctgttcacagCCTGCAGTTAGCGGCAACAGCAACCTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCAGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGTTGGCTCCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtactgattaatgctctcagtcatcatgtccctcatccacctctgctaat Alignment from Exonerate_coding2genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCT-CTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaacacaaaaaccagggcttacccgcctcctctcctgttcacagCCTGCAGTTAGCGGCAACAGCAACCTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCAGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGTTGGCTCCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtactgattaatgctctcagtcatcatgtccctcatccacctctgctaat Alignment from GeneWise CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTG-GCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaacacaaaaaccagggcttacccgcctcctctcctgttcacagCCTGCAGTTAGCGGCAACAGCAACCTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCAGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGTTGGCTCCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtactgattaatgctctcagtcatcatgtccctcatccacctctgctaat #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt tcagtatgactctttttacccaatctgagctaaaggatgctttctttcaggGAGAAAAAGGAGCCTCAAAAGATCCTGGATAGGGAGCGCCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACATAAAAAGGAAGTGTATGGGCACTGGgtgtaagtgctctgagatgcagggcaatacttaagccactgagcttcattta Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt tcagtatgactctttttacccaatctgagctaaaggatgctttctttcaggGAGAAAAAGGAGCCTCAAAAGATCCTGGATAGGGAGCGCCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACATAAAAAGGAAgtgtatgggcactgggtgtaagtgctctgagatgcagggcaatacttaagctcagtgccctcttgtt Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT tcagtatgactctttttacccaatctgagctaaaggatgctttctttcagGGAGAAAAAGGAGCCTCAAAAGATCCTGGATAGGGAGCGCcAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACATAAAAAGGAAGTgtatgggcactgggtgtaagtgctctgagatgcagggcaatacttaagccactgagcttcattta Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT tcagtatgactctttttacccaatctgagctaaaggatgctttctttcagGGAGAAAAAGGAGCCTCAAAAGATCCTGGATAGGGAGCGCCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACATAAAAAGGAAGTgtatgggcactgggtgtaagtgctctgagatgcagggcaatacttaagccactgagcttcattta Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCG-CAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT tcagtatgactctttttacccaatctgagctaaaggatgctttctttcagGGAGAAAAAGGAGCCTCAAAAGATCCTGGATAGGGAGCGCCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACATAAAAAGGAAGTgtatgggcactgggtgtaagtgctctgagatgcagggcaatacttaagccactgagcttcattta Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT tcagtatgactctttttacccaatctgagctaaaggatgctttctttcagGGAGAAAAAGGAGCCTCAAAAGATCCTGGATAGGGAGCGCCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACATAAAAAGGAAGTgtatgggcactgggtgtaagtgctctgagatgcagggcaatacttaagccactgagcttcattta Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT tcagtatgactctttttacccaatctgagctaaaggatgctttctttcagGGAGAAAAAGGAGCCTCAAAAGATCCTGGATAGGGAGCGCCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACATAAAAAGGAAGTgtatgggcactgggtgtaagtgctctgagatgcagggcaatacttaagccactgagcttcattta Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAG-CGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT tcagtatgactctttttacccaatctgagctaaaggatgctttctttcagGGAGAAAAAGGAGCCTCAAAAGATCCTGGATAGGGAGCGCCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACATAAAAAGGAAGTgtatgggcactgggtgtaagtgctctgagatgcagggcaatacttaagccactgagcttcattta #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggcatcccacaacagccacaccaatcggagtgatgtgatttcatctctagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGTGTGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGTTATAGCACTCACACGCCGTTTGCTGGATGGCCTAGCTCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTTCCAGTGTCctgtaaagacactccactacactgtaacttggcagtgtgtacgtactggaat Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggcatcccacaacagccacaccaatcggagtgatgtgatttcatctctagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGTGTGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGTTATAGCACTCACACGCCGTTTGCTGGATGGCCTAGCTCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTTCCAGTGTCctgtaaagacactccactacactgtaacttggcagtgtgtacgtactggaat Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatcccacaacagccacaccaatcggagtgatgtgatttcatctctagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAAcCTTCGCAGCCGACAGTGTGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGTTATAGCACTCACACGCCGTTTGCTGGATGGCCTAGCTCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTTCCAGTGTCCTgtaaagacactccactacactgtaacttggcagtgtgtacgtactggaat Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGC-TACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatcccacaacagccacaccaatcggagtgatgtgatttcatctctagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGTGTGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGTTATAGCACTCACACGCCGTTTGCTGGATGGCCTAGCTCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTTCCAGTGTCCTgtaaagacactccactacactgtaacttggcagtgtgtacgtactggaat Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatcccacaacagccacaccaatcggagtgatgtgatttcatctctagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGTGTGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGTTATAGCACTCACACGCCGTTTGCTGGATGGCCTAGCTCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTTCCAGTGTCCTgtaaagacactccactacactgtaacttggcagtgtgtacgtactggaat Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatcccacaacagccacaccaatcggagtgatgtgatttcatctctagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGTGTGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGTTATAGCACTCACACGCCGTTTGCTGGATGGCCTAGCTCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTTCCAGTGTCCTgtaaagacactccactacactgtaacttggcagtgtgtacgtactggaat Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatcccacaacagccacaccaatcggagtgatgtgatttcatctctagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGTGTGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGTTATAGCACTCACACGCCGTTTGCTGGATGGCCTAGCTCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTTCCAGTGTCCTgtaaagacactccactacactgtaacttggcagtgtgtacgtactggaat Alignment from GeneWise TGATTTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAG---GATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ccacaacagccacaccaatcggagTGATGTGATTTCATCTCTA------GAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGTGTGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGTTATAGCACTCACACGCCGTTTGCTGGATGGCCTAGCTCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTTCCAGTGTCCTgtaaagacactccactacactgtaacttggcagtgtgtacgtactggaat #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAA-GCTTCTGACTACATCCCAGATGACCACCAGg gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcaggcTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAACGCTTCCGACTACATCCCAGATGACCACCAGggtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAA-GCTTCTGACTACATCCCAGATGACCACCAGg gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcaggcTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAACGCTTCCGACTACATCCCAGATGACCACCAGggtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAA-GCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAcGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAA-GCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAACGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAA-GCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAACGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAA-GCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAACGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAA-GCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAACGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from GeneWise GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAA-GCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAACGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGAC-GAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAACGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGAC-GAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAACGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGAC-GAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAcGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGG-ACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAACGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGG-ACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAACGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGAC-GAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAACGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGAC-GAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAACGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGG-GACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAACGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tgtttagccaatattctcatcttctcatatattactttcaaatgttttagtGAATCCATTCGCCCTGATCGAATTTCCTTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATTGTGCTGGAGatgtagggaagttgtcccagggcatggaccctgactctggtgttgctgagta Alignment from CESAR tGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tgtttagccaatattctcatcttctcatatattactttcaaatgttttagtGAATCCATTCGCCCTGATCGAATTTCCTTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATTGTGCTGGAGatgtagggaagttgtcccagggcatggaccctgactctggtgttgctgagta Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttagccaatattctcatcttctcatatattactttcaaatgttttagTGAATCCATTCGCCCTGATcGAATTTCCTTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATTGTGCTGGAGATgtagggaagttgtcccagggcatggaccctgactctggtgttgctgagta Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttagccaatattctcatcttctcatatattactttcaaatgttttagTGAATCCATTCGCCCTGATCGAATTTCCTTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATTGTGCTGGAGATgtagggaagttgtcccagggcatggaccctgactctggtgttgctgagta Alignment from Pairagon TGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttagccaatattctcatcttctcatatattactttcaaatgttttagTGAATCCATTCGCCCTGATCGAATTTCCTTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATTGTGCTGGAGATgtagggaagttgtcccagggcatggaccctgactctggtgttgctgagta Alignment from Exonerate_protein2genome TGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttagccaatattctcatcttctcatatattactttcaaatgttttagTGAATCCATTCGCCCTGATCGAATTTCCTTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATTGTGCTGGAGATgtagggaagttgtcccagggcatggaccctgactctggtgttgctgagta Alignment from Exonerate_coding2genome TGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAAC----TGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGATAGGTGCCAAGGGCAAGCCGTACC tgtttagccaatattctcatcttctcatatattactttcaaatgttttagTGAATCCATTCGCCCTGATCGAATTTCCTTTGGAAGTTTTTGAGCGGTTCTTG----AATAAACTGTGTCTGCGACCAGATATTGACAAGATTGTGCTGG----AGATGTAGGGAAGTTGTCCCAGGgcatggaccctgactctggtgttgctgagta Alignment from GeneWise TGAGTCCATTCGCCCTGAT-GAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tgtttagccaatattctcatcttctcatatattactttcaaatgttttagTGAATCCATTCGCCCTGATCGAATTTCCTTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATTGTGCTGGAGATgtagggaagttgtcccagggcatggaccctgactctggtgttgctgagta #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTG-TTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc ggggttaaccccctgctcctttccactagcaaagtaacctttttctccagGTATGGTCAGAGGAGTTGCTTTAGATTAGCCATGAACATATTGGCCCAGAATGCATCCCAGAACACATTCTTGCGTAAAgcgtaagtctacaaccacataggggaatgctggaatgtcccgctgtgcacca Alignment from CESAR GTCTGGTCAGAGGAGTTG-TTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc ggggttaaccccctgctcctttccactagcaaagtaacctttttctccagGTATGGTCAGAGGAGTTGCTTTAGATTAGCCATGAACATATTGGCCCAGAATGCATCCCAGAACACATTCTTGCGTAAAgcgtaagtctacaaccacataggggaatgctggaatgtcccgctgtgcacca Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTG-TTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC ggggttaaccccctgctcctttccactagcaaagtaacctttttctccagGTATGGTCAGAGGAGTTGcTTTAGATTAGCCATGAACATATTGGCCCAGAATGCATCCCAGAACACATTCTTGCGTAAAGCgtaagtctacaaccacataggggaatgctggaatgtcccgctgtgcacca Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTG-TTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC ggggttaaccccctgctcctttccactagcaaagtaacctttttctccagGTATGGTCAGAGGAGTTGCTTTAGATTAGCCATGAACATATTGGCCCAGAATGCATCCCAGAACACATTCTTGCGTAAAGCgtaagtctacaaccacataggggaatgctggaatgtcccgctgtgcacca Alignment from Pairagon GTCTGGTCAGAGGAGTTG-TTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC ggggttaaccccctgctcctttccactagcaaagtaacctttttctccagGTATGGTCAGAGGAGTTGCTTTAGATTAGCCATGAACATATTGGCCCAGAATGCATCCCAGAACACATTCTTGCGTAAAGCgtaagtctacaaccacataggggaatgctggaatgtcccgctgtgcacca Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTG-TTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC ggggttaaccccctgctcctttccactagcaaagtaacctttttctccagGTATGGTCAGAGGAGTTGCTTTAGATTAGCCATGAACATATTGGCCCAGAATGCATCCCAGAACACATTCTTGCGTAAAGCgtaagtctacaaccacataggggaatgctggaatgtcccgctgtgcacca Alignment from Exonerate_coding2genome ggggttaaccccctgctcctttccactagcaaagtaacctttttctccaggtatggtcagaggagttgctttagattagccatgaacatattggcccagaatgcatcccagaacacattcttgcgtaaagcgtaagtctacaaccacataggggaatgctggaatgtcccgctgtgcacca Alignment from GeneWise GTCTGGTCAGAGGAG-TTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC ggggttaaccccctgctcctttccactagcaaagtaacctttttctccagGTATGGTCAGAGGAGTTGCTTTAGATTAGCCATGAACATATTGGCCCAGAATGCATCCCAGAACACATTCTTGCGTAAAGCgtaagtctacaaccacataggggaatgctggaatgtcccgctgtgcacca #### Pnlip_ID12752_11 --> 1 - 2 Original Alignment gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCC-AAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt ctctagggactaaacaaatggctcaaggccggccaaacccctcttgtcagg------------------------GATGGCAATGAATTTGACTCTGAA------GTTGGAGATTTGCAGAAGGTTAAATTTATCGGC---AACAATGTAATTAACCCGACACTGCCACAAAGTGGGGGCATCAGGGATTACAGTAGAAAGAAATGATGGCAGAgtgtttgttactcatgtaccaaaagccagcagggcgtggcttgaattcacgt Alignment from CESAR gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCC-AAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt ctctagggactaaacaaatggctcaaggccggccaaacccctcttgtcaggGAT------------------------GGCAATGAATTTGACTCT------GAAGTTGGAGATTTGCAGAAGGTTAAATTTATC---GGCAACAATGTAATTAACCCGACACTGCCACAAAGTGGGGGCATCAGGGATTACAGTAGAAAGAAATGATGGCAGAgtgtttgttactcatgtaccaaaagccagcagggcgtggcttgaattcacgt Alignment from Spaln_aa2Genome GTTTTCAAGGGCTCTCTGCAGCCAGGTACTTCTCACGTC------AATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCC-AAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctctagGGACTAAACAAATGGCTCAAGGCCGGCCAAACCCCTCTTGTCAGGGATGGCAATGAATTTGACTCTGAAGTTGGAGATTTGCAGAAGGTTAAATTTATCGGC---AACAATGTAATTAACCCGACACTGCCAcAAAGTGGGGGCATCAGGGATTACAGTAGAAAGAAATGATGGCAGAGTgtttgttactcatgtaccaaaagccagcagggcgtggcttgaattcacgt Alignment from Spaln_nt2Genome TCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACC-CAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctctagggactaaacaaatggctcaaggccggccaaacccctcttgtcagGGATGGCAATGAATTTGACTCT------GAAGTTGGAGATTTGCAGAAGGTTAAATTTATCGG---CAACAATGTAATTAACCCGACACTGCCACAAAGTGGGGGCATCAGGGATTACAGTAGAAAGAAATGATGGCAGAGTgtttgttactcatgtaccaaaagccagcagggcgtggcttgaattcacgt Alignment from Pairagon GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACC-CAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctctagggactaaacaaatggctcaaggccggccaaacccctcttgtcagGG------------------------ATGGCAATGAATTTGACTCT------GAAGTTGGAGATTTGCAGAAGGTTAAATTTATCGG---CAACAATGTAATTAACCCGACACTGCCACAAAGTGGGGGCATCAGGGATTACAGTAGAAAGAAATGATGGCAGAGTgtttgttactcatgtaccaaaagccagcagggcgtggcttgaattcacgt Alignment from Exonerate_protein2genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCC-AAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctctagggactaaacaaatggctcaaGGCCGGCCAAACCCCTCTTGTCAGGGATGGCAATGAATTTGACTCT------GAAGTTGGAGATTTGCAGAAGGTTAAATTTATCGGC---AACAATGTAATTAACCCGACACTGCCACAAAGTGGGGGCATCAGGGATTACAGTAGAAAGAAATGATGGCAGAGTgtttgttactcatgtaccaaaagccagcagggcgtggcttgaattcacgt Alignment from Exonerate_coding2genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCC-AAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctctagggactaaacaaatggctcaaGGCCGGCCAAACCCCTCTTGTCAGGGATGGCAATGAATTTGACTCT------GAAGTTGGAGATTTGCAGAAGGTTAAATTTATCGGC---AACAATGTAATTAACCCGACACTGCCACAAAGTGGGGGCATCAGGGATTACAGTAGAAAGAAATGATGGCAGAGTgtttgttactcatgtaccaaaagccagcagggcgtggcttgaattcacgt Alignment from GeneWise -AAGGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCC-AAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGTGTTC ctctagggactaaacaaatggctcaaggccggccaaacccctcttgtcagGGATGGC---------------------------AATGAATTTGACTCT------GAAGTTGGAGATTTGCAGAAGGTTAAATTTATCGGC---AACAATGTAATTAACCCGACACTGCCACAAAGTGGGGGCATCAGGGATTACAGTAGAAAGAAATGATGGCAGAGTGTTTgttactcatgtaccaaaagccagcagggcgtggcttgaattcacgt #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCT-ATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCT-ATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCT-ATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCcAATAGACCTCTAAAACTTCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCT-ATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAG-CTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCT-ATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from Exonerate_coding2genome GGGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCT-ATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctaGGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCT-ATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgactatggacctgcaggcttatttctcttcccttctagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACGAATGAGAACCCCATTGCTTTCCAGgtatgaactgtgggtcctagccaagaaccaggtgatcctaccactttaac #### Pola2_ID1323_17 --> 1 - 0 Original Alignment tTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACC-TATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggtgactgtatggtcaggagatccctcatgcatcctcttccctctcgcagtTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACACCCTATGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtaggatttggattgctttttcttgcgaacaccctgggacttctgacatg Alignment from CESAR tTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACC-TATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggtgactgtatggtcaggagatccctcatgcatcctcttccctctcgcagtTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACACCCTATGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtaggatttggattgctttttcttgcgaacaccctgggacttctgacatg Alignment from Spaln_aa2Genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACC-TATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggtgactgtatggtcaggagatccctcatgcatcctcttccctctcgcagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACACCcTATGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtaggatttggattgctttttcttgcgaacaccctgggacttctgacatg Alignment from Spaln_nt2Genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATAC-CTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggtgactgtatggtcaggagatccctcatgcatcctcttccctctcgcagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACACCCTATGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtaggatttggattgctttttcttgcgaacaccctgggacttctgacatg Alignment from Pairagon TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATA-CCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggtgactgtatggtcaggagatccctcatgcatcctcttccctctcgcagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACACCCTATGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtaggatttggattgctttttcttgcgaacaccctgggacttctgacatg Alignment from Exonerate_protein2genome TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTATACC-TATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggtgactgtatggtcaggagatccctcatgcatcctcttccctctcgcagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACACCCTATGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtaggatttggattgctttttcttgcgaacaccctgggacttctgacatg Alignment from Exonerate_coding2genome ggtgactgtatggtcaggagatccctcatgcatcctcttccctctcgcagttactatccactttatccaccccacgtggacatggccatagactataagaatttttacaccctatgctcagctgccagtgacacctggtgtattcatagtgccatctgagctgaaatactttgtaaaggtaggatttggattgctttttcttgcgaacaccctgggacttctgacatg Alignment from GeneWise TTACTACCCACTTTATCCACCCCACGAGGACATGGCCATAGACTACGAGAACTTCTAT-ACCTATGCCCAGCTGCCGGTCACCCCCGATGTCTTCATAGTGCCGTCCGAGCTGAGATACTTTGTGAAG ggtgactgtatggtcaggagatccctcatgcatcctcttccctctcgcagTTACTATCCACTTTATCCACCCCACGTGGACATGGCCATAGACTATAAGAATTTTTACACCCTATGCTCAGCTGCCAGTGACACCTGGTGTATTCATAGTGCCATCTGAGCTGAAATACTTTGTAAAGgtaggatttggattgctttttcttgcgaacaccctgggacttctgacatg #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAag tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagcTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCACATACTGACACAGAGGaggtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAag tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagcTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCACATACTGACACAGAGGaggtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCcCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTT-AAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCCGAGT-CCTTAAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Exonerate_coding2genome tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagctccttggggacaccagatagattcagcagagtccctcaagcacatactgacacagaggaggtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from GeneWise tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagctccttggggacaccagatagattcagcagagtccctcaagcacatactgacacagaggaggtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa #### Pola2_ID1325_15 --> 0 - 2 Original Alignment CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTG-TTCCACATCGGGGCTGAGGAGATCTTTag agctcactgtaggttttattgcaaggagaacaacaacaacaacaaatcagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACCGATAAATGGAGTAATG---TATTCAACTACTGCAGACTTACTGCTATCACCTTGGGGCTGAGGAACTGTTCaggtgaggccattcaacccaataagggcagtgacataacatggtccttaaag Alignment from CESAR CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTG-TTCCACATCGGGGCTGAGGAGATCTTTag agctcactgtaggttttattgcaaggagaacaacaacaacaacaaatcagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTAT---TCAACTACTGCAGACTTACTGCTATCACCTTGGGGCTGAGGAACTGTTCaggtgaggccattcaacccaataagggcagtgacataacatggtccttaaag Alignment from Spaln_aa2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTG-TTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagaacaacaacaacaacaaatcagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTATTCA---ACTACTGCAGACTTACTGcTATCACCTTGGGGCTGAGGAACTGTTCAGgtgaggccattcaacccaataagggcagtgacataacatggtccttaaag Alignment from Spaln_nt2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTC-CACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagaacaacaacaacaacaaatcagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACCGATAAATGGAGTAATGT---ATTCAACTACTGCAGACTTACTGCTATCACCTTGGGGCTGAGGAACTGTTCAGgtgaggccattcaacccaataagggcagtgacataacatggtccttaaag Alignment from Pairagon CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTC-----------------------CACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagaacaacaacaacaacaaatcagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACCGATAAATGGAGTAATG-------------------------TATTCAACTACTGCAGACTTACTGCTATCACCTTGGGGCTGAGGAACTGTTCAGgtgaggccattcaacccaataagggcagtgacataacatggtccttaaag Alignment from Exonerate_protein2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTG-TTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagaacaacaacaacaacaaatcagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTATTCA---ACTACTGCAGACTTACTGCTATCACCTTGGGGCTGAGGAACTGTTCAGgtgaggccattcaacccaataagggcagtgacataacatggtccttaaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTG-TTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagaacaacaacaacaacaaatcagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACCGATAAATGGAGTAATGTATTCA---ACTACTGCAGACTTACTGCTATCACCTTGGGGCTGAGGAACTGTTCAGgtgaggccattcaacccaataagggcagtgacataacatggtccttaaag #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gcaagaaggtttaggcggagcagggggattttccatctttcattttatagggGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGCTTTGACTTGACATGGCAATATGGGCCTTGTACAggtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gcaagaaggtttaggcggagcagggggattttccatctttcattttatagggGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGCTTTGACTTGACATGGCAATATGGGCCTTGTACAggtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGcTTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGCTTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGCTTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGCTTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGCTTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGG-CAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gcaagaaggtttaggcggagcagggggattttccatctttcattttatagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGCTTTGACTTGACATGGCAATATGGGCCTTGTACAGgtggagaacccctgtaaccgtccttcattcaatcttacatgaaggacctt #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAA-GTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag cactccactaccaccccctgcttgtctccccattcttttacttcctacaggtATCTCAAGGTTGTTGCAGCGC---AGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCTCGTGTTGAAAGCCCACCCTGAAGACCCTCACTACTGGTGTacgtgagtacagccccagagagctttctactgtctatctgggagctcatctg Alignment from CESAR gtATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAA-GTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag cactccactaccaccccctgcttgtctccccattcttttacttcctacaggtATCTCAAGGTTGTTGCAGCGC---AGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCTCGTGTTGAAAGCCCACCCTGAAGACCCTCACTACTGGTGTacgtgagtacagccccagagagctttctactgtctatctgggagctcatctg Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAA-GTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgcttgtctccccattcttttacttcctacagGTATCTCAAGGTTGTTGCAGCGCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCTcGTGTTGAAAGCCCACCCTGAAGACCCTCACTACTGGTGTACgtgagtacagccccagagagctttctactgtctatctgggagctcatctg Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTA-CCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgcttgtctccccattcttttacttcctacagGTATCTCAAGGTTGTTGCAGCGCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCTCGTGTTGAAAGCCCACCCTGAAGACCCTCACTACTGGTGTACgtgagtacagccccagagagctttctactgtctatctgggagctcatctg Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTA-CCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgcttgtctccccattcttttacttcctacagGTATCTCAAGGTTGTTGCAGCGC---AGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCTCGTGTTGAAAGCCCACCCTGAAGACCCTCACTACTGGTGTACgtgagtacagccccagagagctttctactgtctatctgggagctcatctg Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAA-GTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgcttgtctccccattcttttacttcctacagGTATCTCAAGGTTGTTGCAGCGCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCTCGTGTTGAAAGCCCACCCTGAAGACCCTCACTACTGGTGTACgtgagtacagccccagagagctttctactgtctatctgggagctcatctg Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAA-GTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC cactccactaccaccccctgcttgtctccccattcttttacttcctacagGTATCTCAAGGTTGTTGCAGCGCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCTCGTGTTGAAAGCCCACCCTGAAGACCCTCACTACTGGTGTACGtgagtacagccccagagagctttctactgtctatctgggagctcatctg Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTAC-CAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC cactccactaccaccccctgcttgtctccccattcttttacttcctacagGTATCTCAAGGTTGTTGCAGCGCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCTCGTGTTGAAAGCCCACCCTGAAGACCCTCACTACTGGTGTACGtgagtacagccccagagagctttctactgtctatctgggagctcatctg #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAAC-ACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtcccttgtgaagctagttaaagtctgtttgacccttctctaccagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACCATGGTGAAGCAGAAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGaagtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAAC-ACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtcccttgtgaagctagttaaagtctgtttgacccttctctaccagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACCATGGTGAAGCAGAAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGaagtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAAC-ACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttctctaccagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACcATGGTGAAGCAGAAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAA-CACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttctctaccagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACCATGGTGAAGCAGAAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Pairagon TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAA-CACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttCTCTACCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACCATGGTGAAGCAGAAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Exonerate_protein2genome TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAAC-ACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttCTCTACCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACCATGGTGAAGCAGAAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from Exonerate_coding2genome TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAAC-ACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttCTCTACCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACCATGGTGAAGCAGAAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAAC-ACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtcccttgtgaagctagttaaagtctgtttgacccttCTCTACCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACCATGGTGAAGCAGAAGCCGTTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtgagactcctctttacgggagcaggtcctgttgaatgcattggcagcaa #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTAT-GTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt taaggcacatagctttactgaatattctgatgttttaacttgtgtttcaggtGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATCTCAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAAAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGGTGCAtgtaagagattggtgtcgtgatgtcttactgggtcattcaatattaactat Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTA-GATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAt taaggcacatagctttactgaatattctgatgttttaacttgtgtttcaggtGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATCTCAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAAAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGGTGCAtgtaagagattggtgtcgtgatgtcttactgggtcattcaatattaactat Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTA-GATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT taaggcacatagctttactgaatattctgatgttttaacttgtgtttcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATCTCaGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAAAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGGTGCATgtaagagattggtgtcgtgatgtcttactgggtcattcaatattaactat Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGT-AGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCA---ACCGCATTTATGGCTTCTATGATGAAT taaggcacatagctttactgaatattctgatgttttaacttgtgtttcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATCTCAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAAAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGGTGCATgtaagagattggtgtcgtgatgtcttactgggtcattcaatattaactat Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGT-AGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT taaggcacatagctttactgaatattctgatgttttaacttgtgtttcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATCTCAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAAAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGGTGCATgtaagagattggtgtcgtgatgtcttactgggtcattcaatattaactat Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTA-GATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT taaggcacatagctttactgaatattctgatgttttaacttgtgtttcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATCTCAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAAAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGGTGCATgtaagagattggtgtcgtgatgtcttactgggtcattcaatattaactat Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTA-GATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT taaggcacatagctttactgaatattctgatgttttaacttgtgtttcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATCTCAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAAAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGGTGCATgtaagagattggtgtcgtgatgtcttactgggtcattcaatattaactat Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTAT-GTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAATGCAAGAGAAGA taaggcacatagctttactgaatattctgatgttttaacttgtgtttcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATCTCAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGATCAGATATTTAGAAAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGGTGCATGTAAGAGATTGgtgtcgtgatgtcttactgggtcattcaatattaactat #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATG-AGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catgatctgatgtctaacttaaagatttcaaatactatctttattttcagGTTGTT---GGTGGATATGAGTTCTTTGCAAAAAAGAAAAAACTGGTAACGTTCTTCTCAGCTCCTAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGCAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaagaacaaggaatagcctgtagggaataacctgtctttagaaactggc Alignment from CESAR GTTGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATG-AGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catgatctgatgtctaacttaaagatttcaaatactatctttattttcagGTTGTT---GGTGGATATGAGTTCTTTGCAAAAAAGAAAAAACTGGTAACGTTCTTCTCAGCTCCTAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGCAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaagaacaaggaatagcctgtagggaataacctgtctttagaaactggc Alignment from Spaln_aa2Genome GTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATG-AGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catgatctgatgtctaacttaaagatttcaaatactatctttattttcagGTTGTTGGTGGATATGAGTTCTTTGCAAAAAAGAAAAAACTGGTAACGTTCTTCTCAGCTCCTAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGcAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaagaacaaggaatagcctgtagggaataacctgtctttagaaactggc Alignment from Spaln_nt2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAA---GAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATG-AGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catgatctgatgtctaacttaaagatttcaaatactatctttattttcagGTTGT---TGGTGGATATGAGTTCTTTGCAAAAAAGAAAAAACTGGTAACGTTCTTCTCAGCTCCTAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGCAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaagaacaaggaatagcctgtagggaataacctgtctttagaaactggc Alignment from Pairagon GTTGTAGAAGATGGCTATGAGTTCTTTGC---CAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATG-AGTGTGGATGAGACCCTCATGTGTTCC-------------------------------------------------------------- catgatctgatgtctaacttaaagatttcaaatactatctttattttcagGTTGT---TGGTGGATATGAGTTCTTTGCAAAAAAGAAAAAACTGGTAACGTTCTTCTCAGCTCCTAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGCAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTGTAAGAACAAGGAATAGCCTGTAGGGAATAACCTGTCTTTAGAAACTGGC Alignment from Exonerate_protein2genome GTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATG-AGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catgatctgatgtctaacttaaagatttcaaatactatctttattttcagGTTGTTGGTGGATATGAGTTCTTTGCAAAAAAGAAAAAACTGGTAACGTTCTTCTCAGCTCCTAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGCAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaagaacaaggaatagcctgtagggaataacctgtctttagaaactggc Alignment from Exonerate_coding2genome GTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATG-AGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catgatctgatgtctaacttaaagatttcaaatactatctttattttcagGTTGTTGGTGGATATGAGTTCTTTGCAAAAAAGAAAAAACTGGTAACGTTCTTCTCAGCTCCTAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGCAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaagaacaaggaatagcctgtagggaataacctgtctttagaaactggc Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAG---TTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAG catgatctgatgtctaacttaaagatttcaaatactatctttattttcagGTTGTT---GGTGGATATGAGTTCTTTGCAAAAAAGAAAAAACTGGTAACGTTCTTCTCAGCTCCTAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGCAgtgtagacaagaccctcatatgctccagagctttccctgtaagaacaaggaatagcctgtagggaataacctgtctttagaaactggc #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATCAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctaa Alignment from CESAR GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATCAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctcc Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATcAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctaa Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTA-CAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATCAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctaa Alignment from Pairagon GAGCTGTTAGTTGACTGTTA-CAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATCAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctaa Alignment from Exonerate_protein2genome GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATCAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctaa Alignment from Exonerate_coding2genome GAGCTGT atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagcaactattagttgactgttatcaaacccactgaggtaagttactgcccctccccacaggcatgaagctgtttctttgGATCTAA Alignment from GeneWise atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagcaactattagttgactgttatcaaacccactgaggtaagttactgcccctccccacaggcatgaagctgtttctttggatctaa #### Ppp1r32_ID2841_10 --> 0 - 2 Original Alignment GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAG-GACAGAGATCAGCGGTACCTGACCACCTACAACCAAgg gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATGTTCAAACTTCTTATGAGGAACGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGgggtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from CESAR GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAG-GACAGAGATCAGCGGTACCTGACCACCTACAACCAAgg gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATGTTCAAACTTCTTATGAGGAACGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGgggtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Spaln_aa2Genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAG-GACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATGTTCAAACTTCTTATGAGGAAcGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Spaln_nt2Genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAG-GACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATGTTCAAACTTCTTATGAGGAACGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Pairagon ---------------------------------------------ACAAGGAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAG-GACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG GTTATCATCCCAAATTATGAGCTACCATTGTTTTATTCTCCTGTTATAAGGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATGTTCAAACTTCTTATGAGGAACGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Exonerate_protein2genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAG-GACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATGTTCAAACTTCTTATGAGGAACGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from Exonerate_coding2genome gttatcatcccaaattatgagctaccattgttttattctcctgttataaggaaccaacagggtttaacctgaacaaccccagttatgttcaaacttcttatgaggaacgacagagaccagaggtacctaagtacctataatcaggggtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt Alignment from GeneWise GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAA-CAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG gttatcatcccaaattatgagctaccattgttttattctcctgttataagGAACCAACAGGGTTTAACCTGAACAACCCCAGTTATGTTCAAACTTCTTATGAGGAACGACAGAGACCAGAGGTACCTAAGTACCTATAATCAGGGgtacgtctgtagaaatggaacgtgggacgacattgtcactggattatgtt #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCCATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCCATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCcATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCCATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTGCCAG-CATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCCATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCCATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCCATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCC-AGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgcaagtgtaccttgccttctttgtctttgctctccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCCATGAGTCACAGATTCTACCGCGCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtaagaattctaacacaaatcctatgttatcatcccaaattatgagctac #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGC-CGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGC-CGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGC-CGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCcCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCC-GAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAG-CCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGC-CGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGC-CGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGA- acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCCGAgtaaatgaaagaactctaaagctaagagttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACAATTGGTTCC-AAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattgattctaaatctttgttttgtagatCTCTTGCTCAAGAAAACAATTGGATCCCAAGGAGGAGATTGGCTTTGTAGAAGAGTCCACAAAAAATCCAATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaagagggaatggttaagggtgcttcttgaacactcacaatgctgaggt Alignment from CESAR atCTCTTGCTTAAGAAGACAATTGGTTCC-AAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattgattctaaatctttgttttgtagatCTCTTGCTCAAGAAAACAATTGGATCCCAAGGAGGAGATTGGCTTTGTAGAAGAGTCCACAAAAAATCCAATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaagagggaatggttaagggtgcttcttgaacactcacaatgctgaggt Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCC-AAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattgattctaaatctttgttttgtagATCTCTTGCTCAAGAAAACAATTGGATCCcAAGGAGGAGATTGGCTTTGTAGAAGAGTCCACAAAAAATCCAATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaagagggaatggttaagggtgcttcttgaacactcacaatgctgaggt Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCA-AAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattgattctaaatctttgttttgtagATCTCTTGCTCAAGAAAACAATTGGATCCCAAGGAGGAGATTGGCTTTGTAGAAGAGTCCACAAAAAATCCAATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaagagggaatggttaagggtgcttcttgaacactcacaatgctgaggt Alignment from Pairagon ATCTCTTGCTTAAGAAGACAATTGG-TTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattgattctaaatctttgttttgtagATCTCTTGCTCAAGAAAACAATTGGATCCCAAGGAGGAGATTGGCTTTGTAGAAGAGTCCACAAAAAATCCAATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaagagggaatggttaagggtgcttcttgaacactcacaatgctgaggt Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCC-AAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattgattctaaatctttgttttgtagATCTCTTGCTCAAGAAAACAATTGGATCCCAAGGAGGAGATTGGCTTTGTAGAAGAGTCCACAAAAAATCCAATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaagagggaatggttaagggtgcttcttgaacactcacaatgctgaggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGT-TCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattgattctaaatctttgttttgtagATCTCTTGCTCAAGAAAACAATTGGATCCCAAGGAGGAGATTGGCTTTGTAGAAGAGTCCACAAAAAATCCAATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaagagggaatggttaagggtgcttcttgaacactcacaatgctgaggt #### Pprc1_ID9715_3 --> 0 - 0 Original Alignment AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCT-CTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGAC tttctggcttaagcctagaaggttagaattgacatcctgatttgttgcagAGCAGATTGTCTCTCAAGGACCAAAATGAAATGTCTCTGCTTACACCTCCTGATGGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCCGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCcagggtctgtgtccttccttagtggtactgcctatgtctgcagTTGCACAA Alignment from CESAR taaactcctatgcaggaaacctaaaccattatgtgattgcaatattgagtg Alignment from Spaln_aa2Genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCT-CTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT--- CTGCACAA tttctggcttaagcctagaaggttagaattgacatcctgatttgttgcagAGCAGATTGTCTCTCAAGGACCAAAATGAAATGTCTCTGCTTACACCTcCTGATGGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCCGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCCAGGgtctgtgtccttccttagtggtactgcctatgtctgcagTTGCACAA Alignment from Spaln_nt2Genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTC-TGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTC-- -TGCACAA tttctggcttaagcctagaaggttagaattgacatcctgatttgttgcagAGCAGATTGTCTCTCAAGGACCAAAATGAAATGTCTCTGCTTACACCTCCTGATGGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCCGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCCAGGgtctgtgtccttccttagtggtactgcctatgtctgcagTTGCACAA Alignment from Pairagon AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCT-CTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT------------------------------------------CTGCACAA tttctggcttaagcctagaaggttagaattgacatcctgatttgttgcagAGCAGATTGTCTCTCAAGGACCAAAATGAAATGTCTCTGCTTACACCTCCTGATGGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCCGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCCAGGGTCTGTGTCCTTCCTTAGTGGTACTGCCTATGTCTGCAGTTGCACAA Alignment from Exonerate_protein2genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACA-GCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT--- CTGCACAA tttctggcttaagcctagaaggttagaattgacatcctgatttgttgcagAGCAGATTGTCTCTCAAGGACCAAAATGAAATGTCTCTGCTTACACCTCCTGATGGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCCGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCCAGGgtctgtgtccttccttagtggtactgcctatgtctgcagTTGCACAA Alignment from Exonerate_coding2genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACA-GCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT--- CTGCACAA tttctggcttaagcctagaaggttagaattgacatcctgatttgttgcagAGCAGATTGTCTCTCAAGGACCAAAATGAAATGTCTCTGCTTACACCTCCTGATGGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCCGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCCAGGgtctgtgtccttccttagtggtactgcctatgtctgcagTTGCACAA Alignment from GeneWise AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACA-GCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTCTG ---CACAA tttctggcttaagcctagaaggttagaattgacatcctgatttgttgcagAGCAGATTGTCTCTCAAGGACCAAAATGAAATGTCTCTGCTTACACCTCCTGATGGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCCGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCCAGGgtctgtgtccttccttagtggtactgcctatgtctgcagTTGCACAA #### Pprc1_ID9724_12 --> 0 - 2 Original Alignment GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGA-ATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAgg gctgtatgacaggtccaatcgtcaacagctgtcaatgcagtgtagagtcttccatgctgatgttttggcagGAAGAGAGAAGGGTGGTCTTCATTGGTAAAACACCTGGACGGCATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAgggtgaggcataataattgttcttgttctca Alignment from CESAR GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGA-ATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAgg gctgtatgacaggtccaatcgtcaacagctgtcaatgcagtgtagagtcttccatgctgatgttttggcagGAAGAGAGAAGGGTGGTCTTCATTGGTAAAACACCTGGACGGCATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAgggtgaggcataataattgttcttgttctca Alignment from Spaln_aa2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGA-ATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG gctgtatgacaggtccaatcgtcaacagctgtcaatgcagtgtagagtcttccatgctgatgttttggcagGAAGAGAGAAGGGTGGTCTTCATTGGTAAAACACCTGGACGGcATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtgaggcataataattgttcttgttctca Alignment from Spaln_nt2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGA-ATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG gctgtatgacaggtccaatcgtcaacagctgtcaatgcagtgtagagtcttccatgctgatgttttggcagGAAGAGAGAAGGGTGGTCTTCATTGGTAAAACACCTGGACGGCATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtgaggcataataattgttcttgttctca Alignment from Pairagon GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGG-CCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG gctgtatgacaggtccaatcgtcaacagctgtcaatgcagtgtagagtcttccatgctgatgttttggcagGAAGAGAGAAGGGTGGTCTTCATTGGTAAAACACCTGGACGGCATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtgaggcataataattgttcttgttctca Alignment from Exonerate_protein2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGA-ATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG gctgtatgacaggtccaatcgtcaacagctgtcaatgcagtgtagagtcttccatgctgatgttttggcagGAAGAGAGAAGGGTGGTCTTCATTGGTAAAACACCTGGACGGCATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtgaggcataataattgttcttgttctca Alignment from Exonerate_coding2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGA-ATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG gctgtatgacaggtccaatcgtcaacagctgtcaatgcagtgtagagtcttccatgctgatgttttggcagGAAGAGAGAAGGGTGGTCTTCATTGGTAAAACACCTGGACGGCATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtgaggcataataattgttcttgttctca Alignment from GeneWise GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGC-CGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG gctgtatgacaggtccaatcgtcaacagctgtcaatgcagtgtagagtcttccatgctgatgttttggcagGAAGAGAGAAGGGTGGTCTTCATTGGTAAAACACCTGGACGGCATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtgaggcataataattgttcttgttctca #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAG-GCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggtggcaccggggcatgcgctgatagtgtacgattttatgtttttcctagGCCCACCTGCCTGGCTTGGTGGAACAGGCTGGAGCTCGGAAACGCCAAGGGAGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagagatcctgcagctagttgtgatagcctaggaccaggtagcaattc Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAG-GCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggtggcaccggggcatgcgctgatagtgtacgattttatgtttttcctagGCCCACCTGCCTGGCTTGGTGGAACAGGCTGGAGCTCGGAAACGCCAAGGGAGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagagatcctgcagctagttgtgatagcctaggaccaggtagcaattc Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAG-GCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggtggcaccggggcatgcgctgatagtgtacgattttatgtttttcctagGCCCACCTGCCTGGCTTGGTGGAACAGGCTGGAGCTCGGAAAcGCCAAGGGAGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagagatcctgcagctagttgtgatagcctaggaccaggtagcaattc Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTG-AAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggtggcaccggggcatgcgctgatagtgtacgattttatgtttttcctagGCCCACCTGCCTGGCTTGGTGGAACAGGCTGGAGCTCGGAAACGCCAAGGGAGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagagatcctgcagctagttgtgatagcctaggaccaggtagcaattc Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAG-GCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggtggcaccggggcatgcgctgatagtgtacgattttatgtttttcctagGCCCACCTGCCTGGCTTGGTGGAACAGGCTGGAGCTCGGAAACGCCAAGGGAGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagagatcctgcagctagttgtgatagcctaggaccaggtagcaattc Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAG-GCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggtggcaccggggcatgcgctgatagtgtacgattttatgtttttcctagGCCCACCTGCCTGGCTTGGTGGAACAGGCTGGAGCTCGGAAACGCCAAGGGAGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagagatcctgcagctagttgtgatagcctaggaccaggtagcaattc Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAG-GCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggtggcaccggggcatgcgctgatagtgtacgattttatgtttttcctagGCCCACCTGCCTGGCTTGGTGGAACAGGCTGGAGCTCGGAAACGCCAAGGGAGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagagatcctgcagctagttgtgatagcctaggaccaggtagcaattc Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCT-CTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggtggcaccggggcatgcgctgatagtgtacgattttatgtttttcctagGCCCACCTGCCTGGCTTGGTGGAACAGGCTGGAGCTCGGAAACGCCAAGGGAGCACAGGTAGTGGCATGTTTAAGTGTAAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagagatcctgcagctagttgtgatagcctaggaccaggtagcaattc #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTC-ATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagtcTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAggtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTC-ATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagtcTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAggtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTC-ATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTcATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGAC-TCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGAC-TCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttcccctttcagTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Exonerate_protein2genome TCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTC-ATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttccccttTCAGTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from Exonerate_coding2genome TCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTC-ATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcttaacttttctgtgacattcttcctgctttgctttttccccttTCAGTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGA-CTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG ttaacttttctgtgacattcttcctgctttgctt---TTTCCCCTTTCAGTCTCCAATGAAGTGCCAGAGCACCCTTGCGTGTCGCCTGTCTCCAACCATGTGTATGAGCAGCGACTTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATTAAAGgtaaggccctgaagagtatgatactcaatcctatgctgtgaaaagttata #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tagctcacattccactgtagactccccacactcgcctctctctttgacagccTTGGCCACCCTAAAACCACCAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from CESAR ctCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tatgtcacattccactgtagactccccacactcgcctctctctttgacagccTTGGCCACCCTAAAACCACCAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tagctcacattccactgtagactccccacactcgcctctctctttgacagCCTTGGCCACCCTAAAACCAcCAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCAC-AGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tagctcacattccactgtagactccccacactcgcctctctctttgacagCCTTGGCCACCCTAAAACCACCAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Pairagon CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tagctcacattccactgtagactccccacactcgcctctctctttgacagCCTTGGCCACCCTAAAACCACCAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tagctcacattccactgtagactccccacactcgcctctctctttgacagCCTTGGCCACCCTAAAACCACCAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tagctcacattccactgtagactccccacactcgcctctctctttgacagCCTTGGCCACCCTAAAACCACCAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag Alignment from GeneWise -------------------------------------------------GCTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG TAGCTCACATTCCACTGTAGACTCCCCACACTCGCCTCTCTCTTTGACAGCCTTGGCCACCCTAAAACCACCAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTAgtaagttttgcacccttagcaccccactagcaaataacacctcatgagag #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATCGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGACCCCTGAGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from CESAR GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATCGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGACCCCTGAGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Spaln_aa2Genome -GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATCGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGACCCCTGAGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Spaln_nt2Genome GGTGCAGGAGAGC-CCATGGATTTGGGTGAGCTGGT---GGGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATCGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGACCCCTGAGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Pairagon GGTGCAGGAGAGC-CCATGGATTTGGGTGAGCTGGT---GGGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATCGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGACCCCTGAGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Exonerate_protein2genome GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATCGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGACCCCTGAGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from Exonerate_coding2genome GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTG---GGAATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagGGAGCTGGAGATCGCCATGGACTTGGGTGAGCTGGTTGGGGGAATGACCCCTGAGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA---ATGACCCCTGAGATTATCCAGAAG gtttttgttgtagggagtctgctatgtgaatatgtttctgtatattacagggagctggagATCGCC---------ATGGACTTGGGTGAGCTGGTTGGGGGAATGACCCCTGAGATTATCCAGAAAgtgaggtgagatccatccaccatcaagctgcaacctcatcataccaacca #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACT-GTGCTAACCACGGAG------CGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCACTCGTGTTAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from CESAR CTTCAAGACAAGGCTACT-GTGCTAACCACGGAG------CGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCACTCGTGTTAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACT---GTGCTAACCACGGAGCGTAAGAAGAGAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCACTCGTGTTAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACT-GTGCTAACCACGGAG------CGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCACTCGTGTTAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Pairagon CTTCAAGACAAGGCTACT-GTGCTAACCACGGA------GCGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCACTCGTGTTAACCACAGACACAGGACAAAAGAAAgtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACT---GTGCTAACCACGGAGCGTAAGAAG ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagCTTCAAGACAAGGCCACTCGTGTTAACCACAGACACAGGACAAAAgaaagtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from Exonerate_coding2genome ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagcttcaagacaaggccactcgtgttaaccacagacacaggacaaaagaaagtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca Alignment from GeneWise ttatgtgcttcaaatacagcccacttcacatttcttctttgtgttcccagcttcaagacaaggccactcgtgttaaccacagacacaggacaaaagaaagtgaggctggcctatgtggatatctgcatctttagcgagaagtgtgtgca #### Prpf19_ID3049_8 --> 0 - 0 Original Alignment AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from CESAR AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Spaln_aa2Genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACcCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Spaln_nt2Genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Pairagon ------------------------------------------------AGAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTA-CCGGCAGGTGGCATCCCATGTG TACTTCATTTGTTGCAACTTGGGCCTTTCTGTCCTCTATGACCCCACCAGAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Exonerate_protein2genome AGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagagAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Exonerate_coding2genome AGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagagAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from GeneWise AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCT-CTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg tggggccttgggcactgggaggcaattacctttacctctgttccctccagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTGCTCCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTggttagcgtgggtgtgacttaatattgaatgacagcccctgcatcctcgga Alignment from CESAR GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCT-CTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg tggggccttgggcactgggaggcaattacctttacctctgttccctccagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTGCTCCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTggttagcgtgggtgtgacttaatattgaatgacagcccctgcatcctcgga Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCT-CTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG tggggccttgggcactgggaggcaattacctttacctctgttccctccagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTGCTcCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgttagcgtgggtgtgacttaatattgaatgacagcccctgcatcctcgga Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTC-TGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG tggggccttgggcactgggaggcaattacctttacctctgttccctccagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTGCTCCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgttagcgtgggtgtgacttaatattgaatgacagcccctgcatcctcgga Alignment from Pairagon GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCT-CTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG tggggccttgggcactgggaggcaattacctttacctctgttccctccagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTGCTCCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgttagcgtgggtgtgacttaatattgaatgacagcccctgcatcctcgga Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCT-CTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG tggggccttgggcactgggaggcaattacctttacctctgttccctccagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTGCTCCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgttagcgtgggtgtgacttaatattgaatgacagcccctgcatcctcgga Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCT-CTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG tggggccttgggcactgggaggcaattacctttacctctgttccctccagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTGCTCCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgttagcgtgggtgtgacttaatattgaatgacagcccctgcatcctcgga Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTC-GCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG tggggccttgggcactgggaggcaattacctttacctctgttccctccagGGTCTACACAGTGCTAGTATTCCCAGGATCCTTGCTCCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgttagcgtgggtgtgacttaatattgaatgacagcccctgcatcctcgga #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from CESAR TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Spaln_aa2Genome TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCcTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Spaln_nt2Genome TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Pairagon TACTGGGCCTT-CTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Exonerate_protein2genome TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from Exonerate_coding2genome TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc Alignment from GeneWise TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttaaggcgccagaccatatttagatggatgtatggtcttttgcctacagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacccgattactgaaacactttcctattatggtggtagtttcacggtgc #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgattctacatgattagcaaacacctttgtgtttcttcaccagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACAGTGGGACAATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaatgggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgattctacatgattagcaaacacctttgtgtttcttcaccagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACAGTGGGACAATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaatgggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgattctacatgattagcaaacacctttgtgtttcttcaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAcAGTGGGACAATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaatgggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgattctacatgattagcaaacacctttgtgtttcttcaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACAGTGGGACAATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaatgggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgattctacatgattagcaaacacctttgtgtttcttcaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACAGTGGGACAATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaatgggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgattctacatgattagcaaacacctttgtgtttcttcaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACAGTGGGACAATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaatgggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgattctacatgattagcaaacacctttgtgtttcttcaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACAGTGGGACAATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaatgggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgattctacatgattagcaaacacctttgtgtttcttcaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACAGTGGGACAATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaatgggatatagacatgaacaaagggaggtagtggtggggaattgatc #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTAC-CTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaatttttct Alignment from CESAR AGGATCTACTAC-CTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttatttgttttt Alignment from Spaln_aa2Genome AGGATCTACTAC-CTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATcCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaatttttct Alignment from Spaln_nt2Genome AGGATCTACTA-CCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaatttttct Alignment from Pairagon AGGATCTACTA-CCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaatttttct Alignment from Exonerate_protein2genome AGGATCTACTAC-CTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaatttttct Alignment from Exonerate_coding2genome gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagcggatttattatcctgtctttggagttctacatgggccggacactacaaaacaccatggtaaatcttgccttagggaatgcctgtgatgaggctacttaccaggtgagtaataaagcagcatctacgtgagcatttgagttttaaatttttct Alignment from GeneWise -------TACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG gtagtgcagacccaattgagacctttcgtgatttggtcttctctccccagCGGATTTATTATCCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtgagtaataaagcagcatctacgtgagcatttgagttttaaatttttct #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCT-GCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG agtatttgcagccttcaggtctatacagatatctacaacaatccctgcagctTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTCGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaattaatcctgaccctaatattttttggggtttagtcataataattag Alignment from CESAR ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCT-GCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG agtatttgcagccttcaggtctatacagatatctacaacaatccctgcagctTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTCGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaattaatcctgaccctaatattttttggggtttagtcataataattag Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCT-GCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG agtatttgcagccttcaggtctatacagatatctacaacaatccctgcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTcGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaattaatcctgaccctaatattttttggggtttagtcataataattag Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCT-GCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG agtatttgcagccttcaggtctatacagatatctacaacaatccctgcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTCGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaattaatcctgaccctaatattttttggggtttagtcataataattag Alignment from Pairagon CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCT-GCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG agtatttgcagccttcaggtctatacagatatctacaacaatccctgcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTCGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaattaatcctgaccctaatattttttggggtttagtcataataattag Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCT-GCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGG agtatttgcagccttcaggtctatacagatatctacaacaatccctgcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTCGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTAATTAATCCTGACCCTAATattttttggggtttagtcataataattag Alignment from Exonerate_coding2genome agtatttgcagccttcaggtctatacagatatctacaacaatccctgcagcttgctttctggactctatggcccccctagggcttgctcgcttatggctatgggatccgctatgagtttggaatttttaatcagaagatctgtgggggttggcaggtaattaatcctgaccctaatattttttggggtttagtcataataattag Alignment from GeneWise CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCT-GCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG agtatttgcagccttcaggtctatacagatatctacaacaatccctgcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTCGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaattaatcctgaccctaatattttttggggtttagtcataataattag #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTG---GCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTG-GACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCAGTAGACCTTGAACAACTACGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from CESAR GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTG-GACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCAGTAGACCTTGAACAACTACGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTG-GACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCAGTAGACCTTGAACAACTAcGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATC---CCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTG-GACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCAGTAGACCTTGAACAACTACGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Pairagon GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATC---CCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTG-GACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCAGTAGACCTTGAACAACTACGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTG-GACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCAGTAGACCTTGAACAACTACGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from Exonerate_coding2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTG-GACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCAGTAGACCTTGAACAACTACGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGA-CTGGACTGGGACAAG atggggtattcactagaagcccctctgcgatttttgtatcttttctctagGTGGTGATCCAACTTAATGACACACGTCATTCTTTGGCCACCATTCCTGAGCTGATGAGGATTCCAGTAGACCTTGAACAACTACGACTGGGACAAAgtatttcttgtcatcaagcaccggatccacaacaggttgtcctccagtgg #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACA-GTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggagggcaactaatgtgctgtgtttcatttccctgtagGCCTGGGATGTTACACGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTCGAGCGCTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagaataggatgatgagaaaggagctcgggcatgatgtataaatccat Alignment from CESAR GCCTGGGACGTAACA-GTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggagggcaactaatgtgctgtgtttcatttccctgtagGCCTGGGATGTTACACGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTCGAGCGCTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagaataggatgatgagaaaggagctcgggcatgatgtataaatccat Alignment from Spaln_aa2Genome GCCTGGGACGTAACA-GTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggagggcaactaatgtgctgtgtttcatttccctgtagGCCTGGGATGTTACAcGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTCGAGCGCTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagaataggatgatgagaaaggagctcgggcatgatgtataaatccat Alignment from Spaln_nt2Genome GCCTGGGACGTAACA-GTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggagggcaactaatgtgctgtgtttcatttccctgtagGCCTGGGATGTTACACGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTCGAGCGCTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagaataggatgatgagaaaggagctcgggcatgatgtataaatccat Alignment from Pairagon GCCTGGGACGTAACA-GTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggagggcaactaatgtgctgtgtttcatttccctgtagGCCTGGGATGTTACACGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTCGAGCGCTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagaataggatgatgagaaaggagctcgggcatgatgtataaatccat Alignment from Exonerate_protein2genome GCCTGGGACGTAACA-GTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggagggcaactaatgtgctgtgtttcatttccctgtagGCCTGGGATGTTACACGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTCGAGCGCTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagaataggatgatgagaaaggagctcgggcatgatgtataaatccat Alignment from Exonerate_coding2genome GCCTGGGACGTAACA-GTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggagggcaactaatgtgctgtgtttcatttccctgtagGCCTGGGATGTTACACGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTCGAGCGCTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagaataggatgatgagaaaggagctcgggcatgatgtataaatccat Alignment from GeneWise GCCTGGGACGTAACA-GTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggagggcaactaatgtgctgtgtttcatttccctgtagGCCTGGGATGTTACACGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCTCTCGAGCGCTGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagaataggatgatgagaaaggagctcgggcatgatgtataaatccat #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCG-AGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtgttccacttttcctccttacaggcATAAAAAGGGAGCTCAATCGGTTCATGGTGCCACAAGACTATCATGATTGGAGGGAAGgtgagtagagactgatgcatgagagaagagattgacgcatgagagtaaga Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCG-AGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtgttccacttttcctccttacaggcATAAAAAGGGAGCTCAATCGGTTCATGGTGCCACAAGACTATCATGATTGGAGGGAAGgtgagtagagactgatgcatgagagaagagattgacgcatgagagtaaga Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCG-AGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtgttccacttttcctccttacagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAcAAGACTATCATGATTGGAGGGAAGgtgagtagagactgatgcatgagagaagagattgacgcatgagagtaaga Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCG-AGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtgttccacttttcctccttacagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCACAAGACTATCATGATTGGAGGGAAGgtgagtagagactgatgcatgagagaagagattgacgcatgagagtaaga Alignment from Pairagon GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCG-AGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtgttccacttttcctccttacagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCACAAGACTATCATGATTGGAGGGAAGgtgagtagagactgatgcatgagagaagagattgacgcatgagagtaaga Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCG-AGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtgttccacttttcctccttacagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCACAAGACTATCATGATTGGAGGGAAGgtgagtagagactgatgcatgagagaagagattgacgcatgagagtaaga Alignment from Exonerate_coding2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCG-AGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtgttccacttttcctccttacagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCACAAGACTATCATGATTGGAGGGAAGgtgagtagagactgatgcatgagagaagagattgacgcatgagagtaaga Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCG-AGGACTATCATGATTGGAGGCAAG gcagtctgtttttggagcaacagtaagtgttccacttttcctccttacagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCACAAGACTATCATGATTGGAGGGAAGgtgagtagagactgatgcatgagagaagagattgacgcatgagagtaaga #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATAC-ATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagaTTTAAAGTGTTTGTGGATCACGAGGAGTATCATTAAATGTCAGGACAAAGTCAGTGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATAC-ATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagaTTTAAAGTGTTTGTGGATCACGAGGAGTATCATTAAATGTCAGGACAAAGTCAGTGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATAC-ATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATcATTAAATGTCAGGACAAAGTCAGTGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATA-CATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATCATTAAATGTCAGGACAAAGTCAGTGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATA-CATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATCATTAAATGTCAGGACAAAGTCAGTGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATAC-ATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATCATTAAATGTCAGGACAAAGTCAGTGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATAC-ATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATCATTAAATGTCAGGACAAAGTCAGTGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATAC-ATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaaccttttcccttccaggtctgccagtgttgtgttctttttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATCATTAAATGTCAGGACAAAGTCAGTGGATTATATAATgtaacatagtgttcaataaccagggatggggtagacccactgctcttcaa #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATC-AGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgagcttaaggctttgtt Alignment from CESAR GATGACACTTACACAGAGAGCTACATC-AGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgctttctctttttctct Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATC-AGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCcAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgagcttaaggctttgtt Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACAT-CAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgagcttaaggctttgtt Alignment from Pairagon GATGACACTTACACAGAGAGCTACAT-CAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgagcttaaggctttgtt Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATC-AGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgagcttaaggctttgtt Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATC-AGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgagcttaaggctttgtt Alignment from GeneWise GATGACACTTACACAGAGAGCTACATC-AGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT--------------- gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCGCAAGTTCTAGCCTGgtccagtgtcttgtggctgagcttaaggctttgtt #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCTGTGGAG-GACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAACGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCaagtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAG-GACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAACGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCaagtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAG-GACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAcGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAG-GACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAACGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAG-GACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAACGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAG-GACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAACGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAG-GACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAACGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTG-GAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAACGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc #### Rasgrp2_ID1710_9 --> 0 - 0 Original Alignment GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTG-CAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggtggggtgccctgctctttttttctctctagGTGTCCCTGGAACAGTATCAGACAGAGGATGAGCTGTACCAACTCTCATTGCCAGCGGAAGCCATGCTCCAAGTCATGGgtaggttagcccatctatctcccagttgtagcactctattcttttgggct Alignment from CESAR GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTG-CAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggtggggtgccctgctctttttttctctctagGTGTCCCTGGAACAGTATCAGACAGAGGATGAGCTGTACCAACTCTCATTGCCAGCGGAAGCCATGCTCCAAGTCATGGgtaggttagcccatctatctcccagttgtagcactctattcttttgggct Alignment from Spaln_aa2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTG-CAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggtggggtgccctgctctttttttctctctagGTGTCCCTGGAACAGTATCAGACAGAGGATGAGCTGTACCAACTCTCATTGcCAGCGGAAGCCATGCTCCAAGTCATGGgtaggttagcccatctatctcccagttgtagcactctattcttttgggct Alignment from Spaln_nt2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGC-AGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggtggggtgccctgctctttttttctctctagGTGTCCCTGGAACAGTATCAGACAGAGGATGAGCTGTACCAACTCTCATTGCCAGCGGAAGCCATGCTCCAAGTCATGGgtaggttagcccatctatctcccagttgtagcactctattcttttgggct Alignment from Pairagon GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTG-CAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggtggggtgccctgctctttttttctctctagGTGTCCCTGGAACAGTATCAGACAGAGGATGAGCTGTACCAACTCTCATTGCCAGCGGAAGCCATGCTCCAAGTCATGGgtaggttagcccatctatctcccagttgtagcactctattcttttgggct Alignment from Exonerate_protein2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTG-CAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggtggggtgccctgctctttttttctctctagGTGTCCCTGGAACAGTATCAGACAGAGGATGAGCTGTACCAACTCTCATTGCCAGCGGAAGCCATGCTCCAAGTCATGGgtaggttagcccatctatctcccagttgtagcactctattcttttgggct Alignment from Exonerate_coding2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTG-CAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggtggggtgccctgctctttttttctctctagGTGTCCCTGGAACAGTATCAGACAGAGGATGAGCTGTACCAACTCTCATTGCCAGCGGAAGCCATGCTCCAAGTCATGGgtaggttagcccatctatctcccagttgtagcactctattcttttgggct Alignment from GeneWise GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaagggaaagagcaggtggggtgccctgctctttttttctctctagGTGTCCCTGGAACAGTATCAGACAGAGGATGAGCTGTACCAACTCTCATTGCCAGCGGAA------GCCATGCTCCAAgtcatgggtaggttagcccatctatctcccagttgtagcactctattcttttgggct #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAg gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagcaTTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACACGCGTTCCTCTTCATCCACACAggtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAg gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagcaTTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACACGCGTTCCTCTTCATCCACACAggtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAcGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACACGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACACGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACACGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACACGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCT------------------TT gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACACGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc #### Rce1_ID576_6 --> 2 - 1 Original Alignment CTTTTTTGGAGTCg ccCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CTTTCTTGGGGTTggtaagtctgtggtgaccctgtacctttgttttccagccCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaaacgggaaaagtagtgagttacgaagaggaaaaagggctggatctgg Alignment from CESAR CTTTTTTGGAGTCg ccCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CTTTCTTGGGGTTggtgaggctgtggtgaccctgtacctttgttttccagccCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaaacgggaaaagtagtgagttacgaagaggaaaaagggctggatctgg Alignment from Spaln_aa2Genome CTTTTTTGGAGTCG CCCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaagtctgtggtgaccctgtacctttgttttccagCCCATTTTCAGCACATTcATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaaacgggaaaagtagtgagttacgaagaggaaaaagggctggatctgg Alignment from Spaln_nt2Genome CTTTTTTGGAGTCG CCCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaagtctgtggtgaccctgtacctttgttttccagCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaaacgggaaaagtagtgagttacgaagaggaaaaagggctggatctgg Alignment from Pairagon CTTTTTTGGAGTCG CCCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaagtctgtggtgaccctgtacctttgttttccagCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaaacgggaaaagtagtgagttacgaagaggaaaaagggctggatctgg Alignment from Exonerate_protein2genome CTTTTTTGGAGTCG CCCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaagtctgtggtgaccctgtacctttgttttccagCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaaacgggaaaagtagtgagttacgaagaggaaaaagggctggatctgg Alignment from Exonerate_coding2genome CTTTTTTGGAGTCG CCCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaagtctgtggtgaccctgtacctttgttttccagCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaaacgggaaaagtagtgagttacgaagaggaaaaagggctggatctgg Alignment from GeneWise CTTTTTTGGAGTC------------------------------------GCCCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGGTAAGTCTGTGGTGACCCTGTACCTTTGTTTTCCAGCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaaacgggaaaagtagtgagttacgaagaggaaaaagggctggatctgg #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGC-TTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtaccccccagatctgtctcctgacctgctctccccaggGACCACCCCTCTGTAGTGAAGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCCTTGTCTCCTCTTTGTGTGCTGCTG------GAACTCACTGGTATCCAGgtgagtcgaagaggatgatgtcctgggcagcataccaaggaatcttttgc Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGC-TTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtaccccccagatctgtctcctgacctgctctccccaggGACCACCCCTCTGTAGTGAAGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCCTTGTCTCCTCTTTGTGTGCTGCTG------GAACTCACTGGTATCCAGgtgagtcgaagaggatgatgtcctgggcagcataccaaggaatcttttgc Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGC-TTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtaccccccagatctgtctcctgacctgctctccccagGGACCACCCCTCTGTAGTGAAGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCcTTGTCTCCTCTTTGTGTGCTGCTG------GAACTCACTGGTATCCAGgtgagtcgaagaggatgatgtcctgggcagcataccaaggaatcttttgc Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGC-TTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtaccccccagatctgtctcctgacctgctctccccagGGACCACCCCTCTGTAGTGAAGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCCTTGTCTCCTCTTTGTGTGCTGCT------GGAACTCACTGGTATCCAGgtgagtcgaagaggatgatgtcctgggcagcataccaaggaatcttttgc Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAG-CTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtaccccccagatctgtctcctgacctgctctccccagGGACCACCCCTCTGTAGTGAAGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCCTTGTCTCCTCTTTGTGTGCTGCT------GGAACTCACTGGTATCCAGgtgagtcgaagaggatgatgtcctgggcagcataccaaggaatcttttgc Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGC-TTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtaccccccagatctgtctcctgacctgctctccccagGGACCACCCCTCTGTAGTGAAGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCCTTGTCTCCTCTTTGTGTGCTGCTG------GAACTCACTGGTATCCAGgtgagtcgaagaggatgatgtcctgggcagcataccaaggaatcttttgc Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGC-TTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtaccccccagatctgtctcctgacctgctctccccagGGACCACCCCTCTGTAGTGAAGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCCTTGTCTCCTCTTTGTGTGCTGCTG------GAACTCACTGGTATCCAGgtgagtcgaagaggatgatgtcctgggcagcataccaaggaatcttttgc Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTG-TCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtaccccccagatctgtctcctgacctgctctccccagGGACCACCCCTCTGTAGTGAAGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCCTTGTCTCCTCTTTGTGTGCTGCTG------GAACTCACTGGTATCCAGgtgagtcgaagaggatgatgtcctgggcagcataccaaggaatcttttgc #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACC-CGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag gcttacttgaggggtcttatttggcctcctattttgaatttctgtaacagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACCGTAGTCAAACCAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATaggtaagaagtgtagtttctgacttaggggaatgataaatggagggtaaaaa Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACC-CGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag gcttacttgaggggtcttatttggcctcctattttgaatttctgtaacagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACCGTAGTCAAACCAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATaggtaagaagtgtagtttctgacttaggggaatgataaatggagggtaaaaa Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACC-CGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG gcttacttgaggggtcttatttggcctcctattttgaatttctgtaacagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACAcCGTAGTCAAACCAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtaagaagtgtagtttctgacttaggggaatgataaatggagggtaaaaa Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGAC-CCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG gcttacttgaggggtcttatttggcctcctattttgaatttctgtaacagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACCGTAGTCAAACCAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtaagaagtgtagtttctgacttaggggaatgataaatggagggtaaaaa Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGAC-CCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG gcttacttgaggggtcttatttggcctcctattttgaatttctgtaacagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACCGTAGTCAAACCAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtaagaagtgtagtttctgacttaggggaatgataaatggagggtaaaaa Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACC-CGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG gcttacttgaggggtcttatttggcctcctattttgaatttctgtaacagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACCGTAGTCAAACCAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtaagaagtgtagtttctgacttaggggaatgataaatggagggtaaaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAG-ACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG gcttacttgaggggtcttatttggcctcctattttgaatttctgtaacagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACCGTAGTCAAACCAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGTAAGGACAAAGAAGATAGgtaagaagtgtagtttctgacttaggggaatgataaatggagggtaaaaa #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagtGATGAAGTAGATGAGGGGCAACGGCGCTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from CESAR tGATGAACTAGAAGAGGGACGA-GGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagtGATGAAGTAGATGAGGGGCAACGGCGCTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGA-GGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCAAcGGCGCTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGA-GGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCAACGGCGCTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGA-GGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCAACGGCGCTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGA-GGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCAACGGCGCTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGA-GGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagTGATGAAGTAGATGAGGGGCAACGGCGCTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tggataggtatgatcctcccttattttcattaattatgctttaattttagtgatgaagtagatgagG---------------GGCAACGGCGCTGTGAGTGAGGGGGAGCCAGATACTGGGGATCCCAAGCAGAAGgtaagatccatgccatattgtgtcctatgccatactaaccctcttgctgg #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAg cttcccccatttttagctttcatcgatggttgatcttctttctcctccagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTTTAGCAGTTCAAggtaagagatgctattgtgggattccaaaaatctggagatgtttgagaccc Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAg cttcccccatttttagctttcatcgatggttgatcttctttctcctccagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTTTAGCAGTTCAAggtaagagatgctattgtgggattccaaaaatctggagatgtttgagaccc Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccatttttagctttcatcgatggttgatcttctttctcctccagGCTAATACCAAGTTCAACTCCCGCTGGACCcACTGATGAGGAACTTTTAGCAGTTCAAGgtaagagatgctattgtgggattccaaaaatctggagatgtttgagaccc Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGAC-CACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccatttttagctttcatcgatggttgatcttctttctcctccagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTTTAGCAGTTCAAGgtaagagatgctattgtgggattccaaaaatctggagatgtttgagaccc Alignment from Pairagon GCTAATACCAAGTTCAACTCCCGCTGGA-CCACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccatttttagctttcatcgatggttgatcttctttctcctccagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTTTAGCAGTTCAAGgtaagagatgctattgtgggattccaaaaatctggagatgtttgagaccc Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccatttttagctttcatcgatggttgatcttctttctcctccagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTTTAGCAGTTCAAGgtaagagatgctattgtgggattccaaaaatctggagatgtttgagaccc Alignment from Exonerate_coding2genome GCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAGGCTAATACCAAGTTCAACTCCCGCTGGAC-CACTGATGAGCAACTTCTAGCTGTTCAAG tcccccATTTTTAGCTTTCATCGATGGTTGATCTTCTTTCTCCTCCA--GGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTTTAGCAGTTCAAGgtaagagatgctattgtgggattccaaaaatctggagatgtttgagaccc Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccatttttagctttcatcgatggttgatcttctttctcctccagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTTTAGCAGTTCAAGgtaagagatgctattgtgggattccaaaaatctggagatgtttgagaccc #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCC-ACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctgttttgtttttttgtccacagGT Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCC-ACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctgtcctttctttgcatctgcagGT Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCC-ACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCcACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctgttttgtttttttgtccacagGT Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCC-ACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctgttttgtttttttgtccacagGT Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAG-CCACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctgttttgtttttttgtccacagGT Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCC-ACAGCCCTAGAAGAAGATGATGAG GT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCCACAGCCCTTGAGGAGGATGATAAGgtaagcgacctctctatgaaacatcctgttttgtttttttgtccacagGT Alignment from Exonerate_coding2genome ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagccatttgtagatatgggacagactttggggctattgcagaagtgatcgggaacaagactctgacccaagtgaagacgttctttgtgagctatcgccgccactttaacctggaagaggtgctgcaggaatgggaagctgagcaagatggggcccccacggctccggtccccacggaagaggcccggcgaggggctcctgtttcaacccacagcccttgaggaggatgataaggtaagcgacctctctatgaaacatcctgttttgtttttttgtccacaggt Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTA-CCAGCCACAGCCCTAGAAGAAGATGAT------------------------------------------------GAGGT ggaccagctgttttgtccacattcagacgaaaacatttccttttaaacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACGGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTTTCAACCCACAGCCCTTGAGGAGGATGATAAGGTAAGCGACCTCTCTATGAAACATCCTGTTTTGTTTTTTTGTCCACAGGT #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAG-CCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagaaCCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGAGAAGCATGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAG-CAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagaaCCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGAGAAGCATGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAG-CAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCCAAAtCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGAGAAGCATGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAG-CAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGAGAAGCATGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Pairagon CCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAG-CAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctCCTCAGAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGAGAAGCATGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAG-CAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggccagggcacactgtaccacctttttttcttattctctcctcagAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCCAAATCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGAGAAGCATGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG agggcacactgtaccacct---------TTTTTTCTTATTCTCTCCTCAGAACCAGCCCAGGCAGCTGGCCCTTATGTGGACATCATCAAACAACCCAAATCAACAAGGC--CGTTTCCGCTATAAATCTGAGGGGCACTCTGAAGGTGGTATCCCTGGTGAGAGAAGCATGGATACTAAAAAGACACATCCCACTATAAAGgtgagtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtatc #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTC-CAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tgaggattgcactgagctaaacagatagttttctgctatcattctttcaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCCAGGACCTTGTACAACTCATC------TATTGCCGTACCaggtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTC-CAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tgaggattgcactgagctaaacagatagttttctgctatcattctttcaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCCAGGACCTTGTACAACTCATC------TATTGCCGTACCaggtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTC-CAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCcCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTT-CCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATGTT-CCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTC-CAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tgaggattgcactgagctaaacagatagttttctgctatcattctttcagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCCAGGACCTTGTACAACTCATC------TATTGCCGTACCAGgtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from Exonerate_coding2genome tgaggattgcactgagctaaacagatagttttctgctatcattctttcaggaatctctttggaggtctcagaactcatgttcccaggaccttgtacaactcatctattgccgtaccaggtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat Alignment from GeneWise GCTCATCTGTGGATACTGCCGTACCAG TGAGGATTGCACTGAGCTAAACAGATAgttttctgctatcattctttcaggaatctctttggaggtctcagaactcatgttcccaggaccttgtacaactcatctattgccgtaccaggtgagactgtctgtgcacacctgctgacccttcaagccaactcagcacat #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAG-AAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGCAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAggtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAG-AAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGCAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAggtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAG-AAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGcAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAG-AAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGCAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAG-AAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGCAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAG-AAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGCAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAG-AAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGCAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTG-CGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGCAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg tgaccctaaattccagacctccagtacaggtacttgttatttgttcataggaGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTACAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGggtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg tgaccctaaattccagacctccagtacaggtacttgttatttgttcataggaGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTACAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGggtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAcAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG---AGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTACAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGA---GAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTACAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTACAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTACAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTG-AGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTACAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGAC-GAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccaggaTTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GACCGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGAC-GAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccaggaTTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GACCGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAGGACC-----------------------------------------------------------GATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGA-AGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGA cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAGGACCGATGCCCAGGAACCATTAGAGAGA---GACTT----GGTAAAAATGA--AGAGATTGTACAAG-----TGAGAGAATTTTGCACAAg Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAGGA-----------------------------------------------------------CCGATGCCCAGGAACCATTAGAGAGAGACTTGgtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from Exonerate_protein2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATA cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAGGACCGATGCCCAGGAACCATTagagagagacttggtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from Exonerate_coding2genome cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccaggattacaggcaccatttcatggtcgtggcttgtggggtgaggaggtagctgtgccaccagagtttgcaggatttgtgatggtgacagaggaccgatgcccaggaaccattagagagagacttggtaaaaatgaagagattgtacaagtgagagaattttgcacaagtgtgtcc Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGG---AAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGAC-GAGGCGCAGGAG---CC cgtaggtcttgaggtccatgggtttgaccatgtcctcccttccactccagGATTACAGGCACCATTTCATGGTCGTGGCTTGTGGGGTGAGGAGGTAGCTGTGCCACCAGAGTTTGCAGGATTTGTGATGGTGACAGAGGACCGATGCCCAGGAACCATTAGAGAGAGACTTGGTAAAAATGAAGAGATTGTACAAGTGAGAGAATTTTGCACAAGTGTGTCC #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGAC-AGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACCAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCaggtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGAC-AGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACCAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCaggtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGAC-AGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACcAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGAC-AGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACCAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGA-CAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACCAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGAC-AGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACCAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGAC-AGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACCAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGAC-AGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACCAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCT-GCTGATGTCCAG ccttgcccccctttgttcactttcaccctctttcctttttttatgttaagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGATGATTTGGGAGATGCTCGCTGATGTCCAGgtgagcagatctgttgcttaacctgctggagaacacagagatcacaagca Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCT-GCTGATGTCCAG ccttgcccccctttgttcactttcaccctctttcctttttttatgttaagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGATGATTTGGGAGATGCTCGCTGATGTCCAGgtgagcagatctgttgcttaacctgctggagaacacagagatcacaagca Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCT-GCTGATGTCCAG ccttgcccccctttgttcactttcaccctctttcctttttttatgttaagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGATGATTTGGGAGATGCTcGCTGATGTCCAGgtgagcagatctgttgcttaacctgctggagaacacagagatcacaagca Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCT-GCTGATGTCCAG ccttgcccccctttgttcactttcaccctctttcctttttttatgttaagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGATGATTTGGGAGATGCTCGCTGATGTCCAGgtgagcagatctgttgcttaacctgctggagaacacagagatcacaagca Alignment from Pairagon TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCT-GCTGATGTCCAG ccttgcccccctttgttcactttcaccctctttcctttttttatgttaagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGATGATTTGGGAGATGCTCGCTGATGTCCAGgtgagcagatctgttgcttaacctgctggagaacacagagatcacaagca Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCT-GCTGATGTCCAG ccttgcccccctttgttcactttcaccctctttcctttttttatgttaagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGATGATTTGGGAGATGCTCGCTGATGTCCAGgtgagcagatctgttgcttaacctgctggagaacacagagatcacaagca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTCTGAAGC ccttgcccccctttgttcactttcaccctctttcctttttttatgttaagttactgaagcgaaatcccactcagcaaattggggatgatttgggagatgctcgctgatgtccaggtgagcagatctgttgcttaacctgctggagaacacagagATCACAAGCA #### Rps6kb2_ID380_2 --> 0 - 2 Original Alignment GACGTGTGTCCCCTTGGCGAATTAAGG-GCTGCTGGCCTGga ttgctagctgggagttagttgagagtgtctcaccaccctttgccctctagGATGTGTGTCCACTCGGCAAACTAAGGCGCTGCTGGCTTGgagtgatgtgaggtctagtgtaaggtagaggctaggggtcaaaaagagggat Alignment from CESAR GACGTGTGTCCCCTTGGCGAATTAAGG-GCTGCTGGCCTGga ttgctagctgggagttagttgagagtgtctcaccaccctttgccctctagGATGTGTGTCCACTCGGCAAACTAAGGCGCTGCTGGCTTGgagtgatgtgaggtctagtgtaaggtagaggctaggggtcaaaaagagggat Alignment from Spaln_aa2Genome CTGCTGGCCTGGA TTGCTAGCTGGGAgttagttgagagtgtctcaccaccctttgccctctaggatgtgtgtccactcggcaaactaaggcgctgctggcttggagtgatgtgaggtctagtgtaaggtagaggctaggggtcaaaaagagggat Alignment from Spaln_nt2Genome CTGCTGGCCTGGA TTGCTAGCTGGGAgttagttgagagtgtctcaccaccctttgccctctaggatgtgtgtccactcggcaaactaaggcgctgctggcttggagtgatgtgaggtctagtgtaaggtagaggctaggggtcaaaaagagggat Alignment from Pairagon GACGTGTGTCCCCTTGGCGAATTAAGG-GCTGCTGGCCTGGA ttgctagctgggagttagttgagagtgtctcaccaccctttgccctctagGATGTGTGTCCACTCGGCAAACTAAGGCGCTGCTGGCTTGGAgtgatgtgaggtctagtgtaaggtagaggctaggggtcaaaaagagggat Alignment from Exonerate_protein2genome GACGTGTGTCCCCTTGGCGAATTAAGG-GCTGCTGGCCTGGA ttgctagctgggagttagttgagagtgtctcaccaccctttgccctctagGATGTGTGTCCACTCGGCAAACTAAGGCGCTGCTGGCTTGGAgtgatgtgaggtctagtgtaaggtagaggctaggggtcaaaaagagggat Alignment from Exonerate_coding2genome ttgctagctgggagttagttgagagtgtctcaccaccctttgccctctaggatgtgtgtccactcggcaaactaaggcgctgctggcttggagtgatgtgaggtctagtgtaaggtagaggctaggggtcaaaaagagggat Alignment from GeneWise ttgctagctgggagttagttgagagtgtctcaccaccctttgccctctaggatgtgtgtccactcggcaaactaaggcgctgctggcttggagtgatgtgaggtctagtgtaaggtagaggctaggggtcaaaaagagggat #### Rrp12_ID8296_27 --> 1 - 2 Original Alignment aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAAC-ATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag atgccattcagacatcaattcctggcgataagtttcctctccttctgcaggTATGAATTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACCATGAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCCGTGCAAAGCAAAGGTGACaggtatgtccaattctcttctcagcaatgagttagctagggctgggtagcct Alignment from CESAR aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAAC-ATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag atgccattcagacatcaattcctggcgataagtttcctctccttctgcaggTATGAATTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACCATGAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCCGTGCAAAGCAAAGGTGACaggtatgtccaattctcttctcagcaatgagttagctagggctgggtagcct Alignment from Spaln_aa2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAAC-ATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG atgccattcagacatcaattcctggcgataagtttcctctccttctgcagGTATGAATTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACcATGAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCCGTGCAAAGCAAAGGTGACAGgtatgtccaattctcttctcagcaatgagttagctagggctgggtagcct Alignment from Spaln_nt2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAAC-ATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG atgccattcagacatcaattcctggcgataagtttcctctccttctgcagGTATGAATTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACCATGAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCCGTGCAAAGCAAAGGTGACAGgtatgtccaattctcttctcagcaatgagttagctagggctgggtagcct Alignment from Pairagon ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAA-CATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG atgccattcagacatcaattcctggcgataagtttcctctccttctgcagGTATGAATTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACCATGAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCCGTGCAAAGCAAAGGTGACAGgtatgtccaattctcttctcagcaatgagttagctagggctgggtagcct Alignment from Exonerate_protein2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAAC-ATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG atgccattcagacatcaattcctggcgataagtttcctctccttctgcagGTATGAATTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACCATGAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCCGTGCAAAGCAAAGGTGACAGgtatgtccaattctcttctcagcaatgagttagctagggctgggtagcct Alignment from Exonerate_coding2genome atgccattcagacatcaattcctggcgataagtttcctctccttctgcaggtatgaattggtcaagggattgttacctgcagagtaccacaaagtactgataaaccatgaggaaagcagagacccgggcaaagaaatatagggccttgagtcaggctgctgtagaggaggaagaagtggaagaagaggaacaggagcccgtgcaaagcaaaggtgacaggtatgtccaattctcttctcagcaatgagttagctagggctgggtagcct Alignment from GeneWise ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAAC-ATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG atgccattcagacatcaattcctggcgataagtttcctctccttctgcagGTATGAATTGGTCAAGGGATTGTTACCTGCAGAGTACCACAAAGTACTGATAAACCATGAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCCGTGCAAAGCAAAGGTGACAGgtatgtccaattctcttctcagcaatgagttagctagggctgggtagcct #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGCTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGCTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGcTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCCC---TAAAATGTCTCATACATATTGTGAAAACACTGCTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCCC---TAAAATGTCTCATACATATTGTGAAAACACTGCTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGCTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Exonerate_coding2genome gaatggttagacaaacagccaggggggcttttttaatatttattttgtagcccctaaaatgtctcatacatattgtgaaaacactgcttagctgaacatgaagaattcatagctgctttgatccctgaggtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGCTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg #### Rrp12_ID8302_21 --> 0 - 0 Original Alignment AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattaacacttgagcctgtttttacctgtgtgtgttctcttcctgcccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTGCAAAGCCACCGCGATGATCTGAAAAAACACTCTCCTGGACTCACTTCGGACAACATCATCCCCTGCAAAAAGGgtatctgctctgacttgatccaccaaatacaggtgagggtgtgtgcaagc Alignment from CESAR AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattaacacttgagcctgtttttacctgtgtgtgttctcttcctgcccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTGCAAAGCCACCGCGATGATCTGAAAAAACACTCTCCTGGACTCACTTCGGACAACATCATCCCCTGCAAAAAGGgtatctgctctgacttgatccaccaaatacaggtgagggtgtgtgcaagc Alignment from Spaln_aa2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattaacacttgagcctgtttttacctgtgtgtgttctcttcctgcccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTGCAAAGCCACCGCGATGATCTGAAAAAAcACTCTCCTGGACTCACTTCGGACAACATCATCCCCTGCAAAAAGGgtatctgctctgacttgatccaccaaatacaggtgagggtgtgtgcaagc Alignment from Spaln_nt2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAG-AAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattaacacttgagcctgtttttacctgtgtgtgttctcttcctgcccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTGCAAAGCCACCGCGATGATCTGAAAAAACACTCTCCTGGACTCACTTCGGACAACATCATCCCCTGCAAAAAGGgtatctgctctgacttgatccaccaaatacaggtgagggtgtgtgcaagc Alignment from Pairagon AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattaacacttgagcctgtttttacctgtgtgtgttctcttcctgcccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTGCAAAGCCACCGCGATGATCTGAAAAAACACTCTCCTGGACTCACTTCGGACAACATCATCCCCTGCAAAAAGGgtatctgctctgacttgatccaccaaatacaggtgagggtgtgtgcaagc Alignment from Exonerate_protein2genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattaacacttgagcctgtttttacctgtgtgtgttctcttcctgcccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTGCAAAGCCACCGCGATGATCTGAAAAAACACTCTCCTGGACTCACTTCGGACAACATCATCCCCTGCAAAAAGGgtatctgctctgacttgatccaccaaatacaggtgagggtgtgtgcaagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAG-AAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattaacacttgagcctgtttttacctgtgtgtgttctcttcctgcccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTGCAAAGCCACCGCGATGATCTGAAAAAACACTCTCCTGGACTCACTTCGGACAACATCATCCCCTGCAAAAAGGgtatctgctctgacttgatccaccaaatacaggtgagggtgtgtgcaagc #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAG-GTTCTCGATCCTGCCAGCTCTGATTTCACCag cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGCGTTCTTGACCCCCCCAGTTCAGATTTCACTaggtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from CESAR TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAG-GTTCTCGATCCTGCCAGCTCTGATTTCACCag cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGCGTTCTTGACCCCCCCAGTTCAGATTTCACTaggtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAG-GTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGcGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Spaln_nt2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAG-GTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGCGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Pairagon TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAG-GTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGCGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAG-GTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGCGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAG-GTTCTCGATCCTGCCAGCTCTGATTTCACCAGA cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGCGTTCTTGACCCCCCCAGTTCAGATTTCACTAGGtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from GeneWise cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagctggtgaatagcttcctagataaggcaattgaaaagcgttcttgacccccccagttcagatttcactaggtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct #### Rrp12_ID8307_16 --> 2 - 0 Original Alignment caATGGACCTGGCTCAG-GCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaATGGATCTAGCTCAACGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from CESAR caATGGACCTGGCTCAG-GCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaATGGATCTAGCTCAACGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Spaln_aa2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAC-----GCCACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Spaln_nt2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCA---ACGC--CACAGTGGAGTCCAAGATTG---ATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Pairagon CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCA-----ACGCCACAGTGGAGTCCAAGAT---TGATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Exonerate_protein2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaacCCCAGCAATGGATCTAGCTCAACGCCACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Exonerate_coding2genome ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaatggatctagctcaacgccacagtggagtccaagattgatacactccagtggcaagtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from GeneWise -------ATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAA ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaatggatctagctcaacgccacagtggagtccaagattgatacactccagtggcaagtgagTGCCAACTGGGAACTGACAAGGGCTGAGCATATCTGTGAAGTA-- #### Rrp12_ID8308_15 --> 1 - 1 Original Alignment gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTG-CCCTTGGCCACCACTCTTAAGAGAAAAg cagggggctggttcaataagctttcgcttttttttcgcatttaattttaggGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGTTTCTTCACCACTTATTTCTTGCCCCCTAGCTACAACCCTTAAGAGAAAAggtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from CESAR gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTG-CCCTTGGCCACCACTCTTAAGAGAAAAg cagggggctggttcaataagctttcgcttttttttcgcatttaattttaggGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGTTTCTTCACCACTTATTTCTTGCCCCCTAGCTACAACCCTTAAGAGAAAAggtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Spaln_aa2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCC-TTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGTTTCTTCACCACTTATTTCTTGCCCcCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Spaln_nt2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCT-TGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTT---TCAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGTTTCTTCACCACTTATTTCTTGCCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Pairagon GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTG-CCCTTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGTTTCTTCACCACTTATTTCTTGCCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Exonerate_protein2genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTG-CCCTTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGTTTCTTCACCACTTATTTCTTGCCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTC-TTGCCCTTGGCCACCACTCTTAAGAGAAAAG cagggggctggttcaataagctttcgcttttttttcgcatttaattttagGGAAACTCTGGACTTT---CAGAGCTGGTTGCTGTCTGTCATCCGGGATTATGTCCAGGAAACCCGGCTTGGTTTCTTCACCACTTATTTCTTGCCCCCTAGCTACAACCCTTAAGAGAAAAGgtacatagcttttctttctataaaatacaggtcacagaaggaatatcagt #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAA-CTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAA-CTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAA-CTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGcCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAAC-TGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAA-CTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAA-CTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAA-CTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAA-CTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCC-AATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat agggctcaagattttcccgttcccaggaccttattctcatttccttttaggaTTGCTTGAAACCACAGTACAAAAGGTTGCCTGGGTGGAAGCTCCCCAATAGGACCCTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtaagctttatcaacacaaggtgtcatagcaactgctatgaatatggaga Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCC-AATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat agggctcaagattttcccgttcccaggaccttattctcatttccttttaggaTTGCTTGAAACCACAGTACAAAAGGTTGCCTGGGTGGAAGCTCCCCAATAGGACCCTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtaagctttatcaacacaaggtgtcatagcaactgctatgaatatggaga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCC-AATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagattttcccgttcccaggaccttattctcatttccttttagGATTGCTTGAAACCACAGTACAAAAGGTTGCCTGGGTGGAAGCTCCCcAATAGGACCCTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtaagctttatcaacacaaggtgtcatagcaactgctatgaatatggaga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCC-AATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagattttcccgttcccaggaccttattctcatttccttttagGATTGCTTGAAACCACAGTACAAAAGGTTGCCTGGGTGGAAGCTCCCCAATAGGACCCTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtaagctttatcaacacaaggtgtcatagcaactgctatgaatatggaga Alignment from Pairagon GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCT-CCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagattttcccgttcccaggaccttattctcatttccttttagGATTGCTTGAAACCACAGTACAAAAGGTTGCCTGGGTGGAAGCTCCCCAATAGGACCCTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtaagctttatcaacacaaggtgtcatagcaactgctatgaatatggaga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCT-CCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagattttcccgttcccaggaccttattctcatttccttttagGATTGCTTGAAACCACAGTACAAAAGGTTGCCTGGGTGGAAGCTCCCCAATAGGACCCTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtaagctttatcaacacaaggtgtcatagcaactgctatgaatatggaga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCT-CCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagattttcccgttcccaggaccttattctcatttccttttagGATTGCTTGAAACCACAGTACAAAAGGTTGCCTGGGTGGAAGCTCCCCAATAGGACCCTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtaagctttatcaacacaaggtgtcatagcaactgctatgaatatggaga Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAG-GCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagattttcccgttcccaggaccttattctcatttccttttagGATTGCTTGAAACCACAGTACAAAAGGTTGCCTGGGTGGAAGCTCCCCAATAGGACCCTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtaagctttatcaacacaaggtgtcatagcaactgctatgaatatggaga #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTG-CTCCTGTGTCAGAACAAAg tggcagggcaatctggggccaccttttcgtgacccttggtccccacacagTTCTCTGCTTCTTCTACAACTATCTTGGATGAGGAGCCCATAGTGAACCGAGGGCTAGCTGCTGCCCTGCCTCCTATGTCAGAACAGAggtaagtgtttgggggggctgttatcacagttgtatattttattgatcatg Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTG-CTCCTGTGTCAGAACAAAg tggcagggcaatctggggccaccttttcgtgacccttggtccccacacagTTCTCTGCTTCTTCTACAACTATCTTGGATGAGGAGCCCATAGTGAACCGAGGGCTAGCTGCTGCCCTGCCTCCTATGTCAGAACAGAggtaagtgtttgggggggctgttatcacagttgtatattttattgatcatg Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTG-CTCCTGTGTCAGAACAAAG tggcagggcaatctggggccaccttttcgtgacccttggtccccacacagTTCTCTGCTTCTTCTACAACTATCTTGGATGAGGAGCCCATAGTGAACCGAGGGCTAGCTGCTGCCCTGcCTCCTATGTCAGAACAGAGgtaagtgtttgggggggctgttatcacagttgtatattttattgatcatg Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGC-TCCTGTGTCAGAACAAAG tggcagggcaatctggggccaccttttcgtgacccttggtccccacacagTTCTCTGCTTCTTCTACAACTATCTTGGATGAGGAGCCCATAGTGAACCGAGGGCTAGCTGCTGCCCTGCCTCCTATGTCAGAACAGAGgtaagtgtttgggggggctgttatcacagttgtatattttattgatcatg Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTG-CTCCTGTGTCAGAACAAAG tggcagggcaatctggggccaccttttcgtgacccttggtccccacacagTTCTCTGCTTCTTCTACAACTATCTTGGATGAGGAGCCCATAGTGAACCGAGGGCTAGCTGCTGCCCTGCCTCCTATGTCAGAACAGAGgtaagtgtttgggggggctgttatcacagttgtatattttattgatcatg Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTG-CTCCTGTGTCAGAACAAAG tggcagggcaatctggggccaccttttcgtgacccttggtccccacacagTTCTCTGCTTCTTCTACAACTATCTTGGATGAGGAGCCCATAGTGAACCGAGGGCTAGCTGCTGCCCTGCCTCCTATGTCAGAACAGAGgtaagtgtttgggggggctgttatcacagttgtatattttattgatcatg Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTG-CTCCTGTGTCAGAACAAAG tggcagggcaatctggggccaccttttcgtgacccttggtccccacacagTTCTCTGCTTCTTCTACAACTATCTTGGATGAGGAGCCCATAGTGAACCGAGGGCTAGCTGCTGCCCTGCCTCCTATGTCAGAACAGAGgtaagtgtttgggggggctgttatcacagttgtatattttattgatcatg Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTG-CTCCTGTGTCAGAACAAAG tggcagggcaatctggggccaccttttcgtgacccttggtccccacacagTTCTCTGCTTCTTCTACAACTATCTTGGATGAGGAGCCCATAGTGAACCGAGGGCTAGCTGCTGCCCTGCCTCCTATGTCAGAACAGAGgtaagtgtttgggggggctgttatcacagttgtatattttattgatcatg #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAG-AAGCAGCATCAGGAT catgagatactggtagaatctgtgcatgcactggcctttcttctccacagGACTTTGAGAGGGATGAGGAGCACTCAGCAAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGAT------CGAACAGCCTCAGGATgtaagtgctcatgaccataggtgaagggcagcggtgcatccaccgtaggt Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT catgagatactggtagaatctgtgcatgcactggcctttcttctccacagGACTTTGAGAGGGATGAGGAGCACTCAGCAAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGAT--CGAA---CAGCCTCAGGATgtaagtgctcatgaccataggtgaagggcagcggtgcatccaccgtaggt Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT catgagatactggtagaatctgtgcatgcactggcctttcttctccacagGACTTTGAGAGGGATGAGGAGCACTCAGCAAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATC-----GAACAGCCTCAGGATgtaagtgctcatgaccataggtgaagggcagcggtgcatccaccgtaggt Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT catgagatactggtagaatctgtgcatgcactggcctttcttctccacagGACTTTGAGAGGGATGAGGAGCACTCAGCAAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGAT----CGAA-CAGCCTCAGGATgtaagtgctcatgaccataggtgaagggcagcggtgcatccaccgtaggt Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT catgagatactggtagaatctgtgcatgcactggcctttcttctccacagGACTTTGAGAGGGATGAGGAGCACTCAGCAAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGAT-----CGAACAGCCTCAGGATgtaagtgctcatgaccataggtgaagggcagcggtgcatccaccgtaggt Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATC catgagatactggtagaatctgtgcatgcactggcctttcttctccacagGACTTTGAGAGGGATGAGGAGCACTCAGCAAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATCGAACAGCCTCAGGATgtaagtgctcatgaccataggtgaagggcagcggtgcatccaccgtaggt Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATC catgagatactggtagaatctgtgcatgcactggcctttcttctccacagGACTTTGAGAGGGATGAGGAGCACTCAGCAAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATCGAACAGCCTCAGGATgtaagtgctcatgaccataggtgaagggcagcggtgcatccaccgtaggt Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCAT- catgagatactggtagaatctgtgcatgcactggcctttcttctccacagGACTTTGAGAGGGATGAGGAGCACTCAGCAAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATCGAACAGCCTCAGGATgtaagtgctcatgaccataggtgaagggcagcggtgcatccaccgtaggt #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGC-ACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTCATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGC-ACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTCATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGC-ACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTcATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCG-CACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTCATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCG-CACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTCATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGC-CGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTCATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGC-CGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTCATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGC-CGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttacagattctatactgcctataaagtttcctaactctaccgctagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCGTGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTCATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGTTGATGgtgaggcaatcaattcttagcttttatcgtaaggctagtgatacatctag #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGG-CTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagaaGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCCTGCGGCAACTCCAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGG-CTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagaaGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCCTGCGGCAACTCCAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGG-CTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGcCTGCGGCAACTCCAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGC-TGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCCTGCGGCAACTCCAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGG-CTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCCTGCGGCAACTCCAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGG-CTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCCTGCGGCAACTCCAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGG-CTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCCTGCGGCAACTCCAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGG-CTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG atgtgagggtatcacttgtgctgacacatgactattttcatttctcatagAAGATGGGGGGGCTCTCCCACCAGGAGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAAAAGGGGCGTCGGCCTGCGGCAACTCCAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAAgtatgtctcaacaaatagcttgcgatgaggggactgtgcactgttgagat #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCC-CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagaCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACCTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCC-CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagaCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACCTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCC-CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACAcCTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGC-CCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCC------CAAGGAGGAGACACCTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGC-CCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACCTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCC-CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACCTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCC-CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACCTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG---GAGGAGACAC--CTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGAT-GAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagggGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATCGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaaagatgttcatttattttctcag Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGAT-GAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagggGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATCGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaattctgagcctgggcccttttag Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGAT-GAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATcGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaaagatgttcatttattttctcag Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGAT-GAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATCGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaaagatgttcatttattttctcag Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGAT-GAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATCGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaaagatgttcatttattttctcag Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGAT-GAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATCGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaaagatgttcatttattttctcag Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGAT-GAGAGTGTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATCGAGGGTGTGGATGATTTAGCACAGgtaggtctagtaagtctgagagaagaaaagatgttcatttattttctcag Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGT- --GTGGACGATTTGGCACAG agatgcttaatggggtagaatatgactggtatgtgggtcttcttctacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCTGATCGAAATGTGGAGCTTCGGAAAGAGAAGGCGGATTACCTGAGCTATGTTGAAGATCGAGGGTgtggatgatttagcacaggtaggtctagtaagtctgagagaagaaaagATGTTCATTTATTTTCTCAG #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGT-GTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTCGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGT-GTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTCGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGT-GTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTcGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGT-GTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTCGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Pairagon GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGT-GTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTCGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGT-GTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTCGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGT-GTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTCGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGT-GTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTCGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGT-CTGTATGAGAAGCTTTGCGAGGGGACA ctagtgccgggtgccaatatcaggatcactctgcctttgttcggccttagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGTCCTATATGAGAAGCTTTGTGAAGGAACAgtaaatcctttgtacagtgaacctacacttctacctaggacagttggtcc Alignment from CESAR AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGT-CTGTATGAGAAGCTTTGCGAGGGGACA ctagtgccgggtgccaatatcaggatcactctgcctttgttcggccttagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGTCCTATATGAGAAGCTTTGTGAAGGAACAgtaaatcctttgtacagtgaacctacacttctacctaggacagttggtcc Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGT-CTGTATGAGAAGCTTTGCGAGGGGACA ctagtgccgggtgccaatatcaggatcactctgcctttgttcggccttagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGTcCTATATGAGAAGCTTTGTGAAGGAACAgtaaatcctttgtacagtgaacctacacttctacctaggacagttggtcc Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTC-TGTATGAGAAGCTTTGCGAGGGGACA ctagtgccgggtgccaatatcaggatcactctgcctttgttcggccttagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGTCCTATATGAGAAGCTTTGTGAAGGAACAgtaaatcctttgtacagtgaacctacacttctacctaggacagttggtcc Alignment from Pairagon AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGT-CTGTATGAGAAGCTTTGCGAGGGGACA ctagtgccgggtgccaatatcaggatcactctgcctttgttcggccttagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGTCCTATATGAGAAGCTTTGTGAAGGAACAgtaaatcctttgtacagtgaacctacacttctacctaggacagttggtcc Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGT-CTGTATGAGAAGCTTTGCGAGGGGACA ctagtgccgggtgccaatatcaggatcactctgcctttgttcggccttagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGTCCTATATGAGAAGCTTTGTGAAGGAACAgtaaatcctttgtacagtgaacctacacttctacctaggacagttggtcc Alignment from Exonerate_coding2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGT-CTGTATGAGAAGCTTTGCGAGGGGACA ctagtgccgggtgccaatatcaggatcactctgcctttgttcggccttagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGTCCTATATGAGAAGCTTTGTGAAGGAACAgtaaatcctttgtacagtgaacctacacttctacctaggacagttggtcc Alignment from GeneWise AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGT-CTGTATGAGAAGCTTTGCGAGGGGACA ctagtgccgggtgccaatatcaggatcactctgcctttgttcggccttagAAAACAAAAAAGGAACTAGAGGAGGCAGCACGGCACCTTGAATGTCCTATATGAGAAGCTTTGTGAAGGAACAgtaaatcctttgtacagtgaacctacacttctacctaggacagttggtcc #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAACTGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAACTGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAACTGCAGCTTgcaagtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAACTGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAACTGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAACTGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAACTGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGA-GAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgaattttattttattttttttagCTGCCTGAAGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGACCAGACTCACAACAGGCCTTGCTACCAAAACCCTTAGTCTCCAGTGCAATCTTACCCCCTCCTGGAGCCCCCAGAGAACTGCAGCTTGCAAgtgagggacactctgcccctgccctgatgccacaaaatggttgagatcac #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGC-AGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gcttagttccgctggcatgtgttctctatattactgtttcttttttatagATAATCTACAAGTTGCCCACACAGAGCCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTGACAGGAAGGAGCTGGGAAGTGCAGCATATGAGGCAGGCTGATGAGgtatgtagcggttgtattaataggcgggggacttgcagaaaagagaactt Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGC-AGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gcttagttccgctggcatgtgttctctatattactgtttcttttttatagATAATCTACAAGTTGCCCACACAGAGCCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTGACAGGAAGGAGCTGGGAAGTGCAGCATATGAGGCAGGCTGATGAGgtatgtagcggttgtattaataggcgggggacttgcagaaaagagaactt Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGC-AGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gcttagttccgctggcatgtgttctctatattactgtttcttttttatagATAATCTACAAGTTGCCCACACAGAGCcAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTGACAGGAAGGAGCTGGGAAGTGCAGCATATGAGGCAGGCTGATGAGgtatgtagcggttgtattaataggcgggggacttgcagaaaagagaactt Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAG-CAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gcttagttccgctggcatgtgttctctatattactgtttcttttttatagATAATCTACAAGTTGCCCACACAGAGCCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTGACAGGAAGGAGCTGGGAAGTGCAGCATATGAGGCAGGCTGATGAGgtatgtagcggttgtattaataggcgggggacttgcagaaaagagaactt Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAG-CAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gcttagttccgctggcatgtgttctctatattactgtttcttttttatagATAATCTACAAGTTGCCCACACAGAGCCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTGACAGGAAGGAGCTGGGAAGTGCAGCATATGAGGCAGGCTGATGAGgtatgtagcggttgtattaataggcgggggacttgcagaaaagagaactt Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGC-AGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gcttagttccgctggcatgtgttctctatattactgtttcttttttatagATAATCTACAAGTTGCCCACACAGAGCCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTGACAGGAAGGAGCTGGGAAGTGCAGCATATGAGGCAGGCTGATGAGgtatgtagcggttgtattaataggcgggggacttgcagaaaagagaactt Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGC-AGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gcttagttccgctggcatgtgttctctatattactgtttcttttttatagATAATCTACAAGTTGCCCACACAGAGCCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTGACAGGAAGGAGCTGGGAAGTGCAGCATATGAGGCAGGCTGATGAGgtatgtagcggttgtattaataggcgggggacttgcagaaaagagaactt Alignment from GeneWise -CTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gcttagttccgctggcatgtgttctctatattactgtttcttttttatagataatctacaagTTGCCCACACAGAGCCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTGACAGGAAGGAGCTGGGAAGTGCAGCATATGAGGCAGGCTGATGAGgtatgtagcggttgtattaataggcgggggacttgcagaaaagagaactt #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGC-CAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattagtaaagtatttacctacttgtgcgctctctacaccctcacagaaGTTTCACAAGTGCAACACTTTAGGGGGCCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCTCGAGGTCCATTGTTCTCCCTC------AGTGAAATCAGAGAGAGAACACATAAAGAGgtaggtcactgatattgggtttacaggaccccacatttagcttctggtct Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAG-GGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattagtaaagtatttacctacttgtgcgctctctacaccctcacagaaGTTTCACAAGTGCAACACTTTAGGGGGCCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaggtcactgatattgggtttacaggaccccacatttagcttctggtct Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGC-CAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattagtaaagtatttacctacttgtgcgctctctacaccctcacagAAGTTTCACAAGTGCAACACTTTAGGGGGcCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaggtcactgatattgggtttacaggaccccacatttagcttctggtct Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGG-CCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattagtaaagtatttacctacttgtgcgctctctacaccctcacagAAGTTTCACAAGTGCAACACTTTAGGGGGCCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCTCGAGGTCCATTGTTCTCCCTCA------GTGAAATCAGAGAGAGAACACATAAAGAGgtaggtcactgatattgggtttacaggaccccacatttagcttctggtct Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattagtaaagtatttacctacttgtgcgctctctacaccctcacagaagtttcacaagtgcaacactttag------------------------GGGGCCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTG------AAATCAGAGAGAGAACACATAAAGAGgtaggtcactgatattgggtttacaggaccccacatttagcttctggtct Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAG-GGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattagtaaagtatttacctacttgtgcgctctctacaccctcacagAAGTTTCACAAGTGCAACACTTTAGGGGGCCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaggtcactgatattgggtttacaggaccccacatttagcttctggtct Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAG-GGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattagtaaagtatttacctacttgtgcgctctctacaccctcacagAAGTTTCACAAGTGCAACACTTTAGGGGGCCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaggtcactgatattgggtttacaggaccccacatttagcttctggtct Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTC-AAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattagtaaagtatttacctacttgtgcgctctctacaccctcacagAAGTTTCACAAGTGCAACACTTTAGGGGGCCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaggtcactgatattgggtttacaggaccccacatttagcttctggtct #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGAC-AAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctataaatcagtgcatgcttttgttacccccacagatGCAGAATTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACCAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGCACTTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtgagactgatgcacttctagaccagggtaatccaaaaaggccttcagtc Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGAC-AAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctataaatcagtgcatgcttttgttacccccacagatGCAGAATTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACCAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGCACTTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtgagactgatgcacttctagaccagggtaatccaaaaaggccttcagtc Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGAC-AAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctataaatcagtgcatgcttttgttacccccacagATGCAGAATTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACcAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGCACTTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtgagactgatgcacttctagaccagggtaatccaaaaaggccttcagtc Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAG-ATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctataaatcagtgcatgcttttgttacccccacagATGCAGAATTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACCAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGCACTTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtgagactgatgcacttctagaccagggtaatccaaaaaggccttcagtc Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGA-CAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctataaatcagtgcatgcttttgttacccccacagATGCAGAATTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACCAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGCACTTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtgagactgatgcacttctagaccagggtaatccaaaaaggccttcagtc Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGAC-AAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctataaatcagtgcatgcttttgttacccccacagATGCAGAATTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACCAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGCACTTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtgagactgatgcacttctagaccagggtaatccaaaaaggccttcagtc Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGAC-AAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctataaatcagtgcatgcttttgttacccccacagATGCAGAATTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACCAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGCACTTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtgagactgatgcacttctagaccagggtaatccaaaaaggccttcagtc Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGAC-AAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctataaatcagtgcatgcttttgttacccccacagATGCAGAATTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACCAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGCACTTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtgagactgatgcacttctagaccagggtaatccaaaaaggccttcagtc #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGC-AGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg tagttttaccccccagatttatggactgtgagctctgtgcttctctttagGGAGATCTGGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCTCAGTATGACACATTACGGGGAGTCTGCCAGTCTTAATGCTGATACATCATCCCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGtggtaagtgtggagaatgggcatagacagcgggtaaggacaagagagctggc Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGC-AGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg tagttttaccccccagatttatggactgtgagctctgtgcttctctttagGGAGATCTGGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCTCAGTATGACACATTACGGGGAGTCTGCCAGTCTTAATGCTGATACATCATCCCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGtggtaagtgtggagaatgggcatagacagcgggtaaggacaagagagctggc Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGC-AGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG tagttttaccccccagatttatggactgtgagctctgtgcttctctttagGGAGATCTGGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCTCAGTATGACACATTACGGGGAGTCTGCcAGTCTTAATGCTGATACATCATCCCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtaagtgtggagaatgggcatagacagcgggtaaggacaagagagctggc Alignment from Spaln_nt2Genome GGAGATCTGGGAGG-GAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTG-CAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG tagttttaccccccagatttatggactgtgagctctgtgcttctctttagGGAGATCTGGCTGGAGAAGAA-ATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCTCAGTATGACACATTACGGGGAGTCTGCCAGTCTTAATGCTGATACATCATCCCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtaagtgtggagaatgggcatagacagcgggtaaggacaagagagctggc Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTG-CAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG tagttttaccccccagatttatggactgtgagctctgtgcttctctttagGGAGATCTGGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCTCAGTATGACACATTACGGGGAGTCTGCCAGTCTTAATGCTGATACATCATCCCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtaagtgtggagaatgggcatagacagcgggtaaggacaagagagctggc Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGC-AGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG tagttttaccccccagatttatggactgtgagctctgtgcttctctttagGGAGATCTGGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCTCAGTATGACACATTACGGGGAGTCTGCCAGTCTTAATGCTGATACATCATCCCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtaagtgtggagaatgggcatagacagcgggtaaggacaagagagctggc Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGC-AGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG tagttttaccccccagatttatggactgtgagctctgtgcttctctttagGGAGATCTGGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCTCAGTATGACACATTACGGGGAGTCTGCCAGTCTTAATGCTGATACATCATCCCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtaagtgtggagaatgggcatagacagcgggtaaggacaagagagctggc Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGC-AGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG tagttttaccccccagatttatggactgtgagctctgtgcttctctttagGGAGATCTGGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCTCAGTATGACACATTACGGGGAGTCTGCCAGTCTTAATGCTGATACATCATCCCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtaagtgtggagaatgggcatagacagcgggtaaggacaagagagctggc #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAG-GCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctaggAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAACGCTGTCTTT---AGCCCCTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAG-GCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctaggAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAACGCTGTCTTT---AGCCCCTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAG-GCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAAcGCTGTCTTTAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAG-GCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAACGCTGTCTTTA---GCCCCTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAG-GCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAACGCTGTCTTTA---GCCCCTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAG-GCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAACGCTGTCTTTAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAG-GCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAACGCTGTCTTTAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAG-GCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgcaggttgaaggtatttgaattctgtgattttgtatgctctagGAAGACACTGGAGGCTTCAGAAATCTGCCGGTATGACTTGGCAGAGATTCAACGCTGTCTTTAGC---CCCTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGGTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtgagaactccaagtttggaccccactaattgggacatagagagttggcc #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCT-GTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagcaGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCACGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCT-GTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagcaGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCACGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCT-GTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCAcGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCT-GTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCACGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTC-TGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCACGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCT-GTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCACGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCT-GTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCACGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAG-TCTGTGGACAATCTAGTTATCTCACCAATGCAG gcgcccaacagccacccagtgaaagagttccagcacgttctcgttgccagCAGATGGCTGGAATCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAGGAGATACAAGTGCTTAGAGAGCCCCAGTCACGTAGACAATCTAGTGATCTCACCAATGCAAgtgagttagtgttactatggtaagagtcaccacttattttcccaagccta #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGC-TGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tgggatggctggaaaaacactacgcattgtgtatctatttttccacccagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCTAGCCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCGCGAGACCCCTACTGTGGCTGGGATTCTAGCATCCATGTGTGCATGGTGGCCACTACAGTAGCAAACaggtgagtagacaggatataacagtgctcattaagaaggaaaccctggttgc Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGC-TGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tgggatggctggaaaaacactacgcattgtgtatctatttttccacccagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCTAGCCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCGCGAGACCCCTACTGTGGCTGGGATTCTAGCATCCATGTGTGCATGGTGGCCACTACAGTAGCAAACaggtgagtagacaggatataacagtgctcattaagaaggaaaccctggttgc Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGC-TGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacactacgcattgtgtatctatttttccacccagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCTAGCcTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCGCGAGACCCCTACTGTGGCTGGGATTCTAGCATCCATGTGTGCATGGTGGCCACTACAGTAGCAAACAGgtgagtagacaggatataacagtgctcattaagaaggaaaccctggttgc Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGC-TGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacactacgcattgtgtatctatttttccacccagCATAGCCTATATGTGGGGGCTGCTAGTGGA---ATTCAGTTTCCTCTTTCTAGCCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCGCGAGACCCCTACTGTGGCTGGGATTCTAGCATCCATGTGTGCATGGTGGCCACTACAGTAGCAAACAGgtgagtagacaggatataacagtgctcattaagaaggaaaccctggttgc Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAG-CTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacactacgcattgtgtatctatttttccacccagCATAGCCTATATGTGGGGGCTGCTAGTGGAA---TTCAGTTTCCTCTTTCTAGCCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCGCGAGACCCCTACTGTGGCTGGGATTCTAGCATCCATGTGTGCATGGTGGCCACTACAGTAGCAAACAGgtgagtagacaggatataacagtgctcattaagaaggaaaccctggttgc Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGC-TGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacactacgcattgtgtatctatttttccacccagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCTAGCCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCGCGAGACCCCTACTGTGGCTGGGATTCTAGCATCCATGTGTGCATGGTGGCCACTACAGTAGCAAACAGgtgagtagacaggatataacagtgctcattaagaaggaaaccctggttgc Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGC-TGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacactacgcattgtgtatctatttttccacccagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCTAGCCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCGCGAGACCCCTACTGTGGCTGGGATTCTAGCATCCATGTGTGCATGGTGGCCACTACAGTAGCAAACAGgtgagtagacaggatataacagtgctcattaagaaggaaaccctggttgc Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCC-AGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacactacgcattgtgtatctatttttccacccagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCTAGCCTGCTCACGCTACCAGTCTTGTTATGACTGCATTCTAGCGCGAGACCCCTACTGTGGCTGGGATTCTAGCATCCATGTGTGCATGGTGGCCACTACAGTAGCAAACAGgtgagtagacaggatataacagtgctcattaagaaggaaaccctggttgc #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGcCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATG-CAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagatCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAggtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from CESAR atCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagatCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAggtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGC-TCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCCAGTGGCcTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Spaln_nt2Genome GTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagatcagtatctgggaagtacacccag-TGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCT-GTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGC-TCTGGGGTCTATCGCCTGCATCAAGGAAAAG aagtccaggatgtcctcctactgatttcactgtcctctcgttcctcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaattccattaccttttgtggatgtctctcctgattgggcccaaatggc #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCA-GAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaaataaggtcaattcttgtttcttcctgagcagaaAAAGAAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTCGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtattgatttataaagagtagggggccacttttctgtgagcttcttacat Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCA-GAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaaataaggtcaattcttgtttcttcctgagcagaaAAAGAAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTCGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtattgatttataaagagtagggggccacttttctgtgagcttcttacat Alignment from Spaln_aa2Genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCA-GAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaaataaggtcaattcttgtttcttcctgagCAGAAAAAGAAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTcGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtattgatttataaagagtagggggccacttttctgtgagcttcttacat Alignment from Spaln_nt2Genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCA-GAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaaataaggtcaattcttgtttcttcctgagCAGAAAAAGAAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTCGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtattgatttataaagagtagggggccacttttctgtgagcttcttacat Alignment from Pairagon AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATC-AGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaaataaggtcaattcttgtttcttcctgagCAGAAAAAGAAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTCGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtattgatttataaagagtagggggccacttttctgtgagcttcttacat Alignment from Exonerate_protein2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCA-GAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaaataaggtcaattcttgtttcttcctgagCAGAAAAAGAAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTCGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtattgatttataaagagtagggggccacttttctgtgagcttcttacat Alignment from Exonerate_coding2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCA-GAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaaataaggtcaattcttgtttcttcctgagCAGAAAAAGAAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTCGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtattgatttataaagagtagggggccacttttctgtgagcttcttacat Alignment from GeneWise AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCA-TCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaaataaggtcaattcttgtttcttcctgagCAGAAAAAGAAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTCGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtattgatttataaagagtagggggccacttttctgtgagcttcttacat #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccaggCAGTTAGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from CESAR gCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccaggCAGTTAGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGcAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Pairagon GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattggtagcctactacacactaaccttttctttccctccagGCAGTTAGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtagcctttccctccttctttctagagttctatcttcatgaagtcaccac #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACACCCCTGTGCTGC-GCTCTGTTCCCTCAGAGAag aatttatcctgatcagtgtcaggatccataatggtatattttattttcagcTTGGTATTCGCCACCCCCCTGTGTTGTCGCCTTGTTCCCACAGAGAgcgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from CESAR cTTGGTATTTGCCACACCCCTGTGCTGC-GCTCTGTTCCCTCAGAGAag aatttatcctgatcagtgtcaggatccataatggtatattttattttcagcTTGGTATTCGCCACCCCCCTGTGTTGTCGCCTTGTTCCCACAGAGAgcgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCCCTGTGCTGC-GCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCTGTGTTGTcGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCCTGTGCTG-CGCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCTGTGTTGTCGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Pairagon CTTGGTATTTGCCACACCCCTGTGCTG-CGCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCTGTGTTGTCGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Exonerate_protein2genome CTTGGTATTTGCCACACCCCTGTGCTGC-GCTCTGTTCCCTCAGAGAAG aatttatcctgatcagtgtcaggatccataatggtatattttattttcagCTTGGTATTCGCCACCCCCCTGTGTTGTCGCCTTGTTCCCACAGAGAGCgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise aatttatcctgatcagtgtcaggatccataatggtatattttattttcagcttggtattcgccacccccctgtgttgtcgccttgttcccacagagagcgtaagggataccaacctagttgctctgtctgaataagttgtatgtttcct #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment g gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCT-TTAAAGTGTGATTCTga ggtatgcctgttaattggatattagccagaatgacttttgtcatcctcagggCAATCAATCTCAGAGAGTGGTGATCTCAAGGAGGCTCTCAAAGTGTGATTCTgagtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from CESAR g gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTA-AAGTGTGATTCTga ggtaaggctgttaattggatattagccagaatgacttttgtcatcctcagggCAATCAATCTCAGAGAGTGGTGATCTCAAGGAGGCTCTCAAAGTGTGATTCTgagtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Spaln_aa2Genome G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTA-AAGTGTGATTCTGA GgtatgcctgttaattggatattagccagaatgacttttgtcatcctcagGGCAATCAATCTCAGAGAGTGGTGATCTCAAGGAGGCTCTCaAAGTGTGATTCTGAgtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Spaln_nt2Genome G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTA-AAGTGTGATTCTGA GgtatgcctgttaattggatattagccagaatgacttttgtcatcctcagGGCAATCAATCTCAGAGAGTGGTGATCTCAAGGAGGCTCTCAAAGTGTGATTCTGAgtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Pairagon G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCT-TTAAAGTGTGATTCTGA GgtatgcctgttaattggatattagccagaatgacttttgtcatcctcagGGCAATCAATCTCAGAGAGTGGTGATCTCAAGGAGGCTCTCAAAGTGTGATTCTGAgtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Exonerate_protein2genome G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTA-AAGTGTGATTCTGA GgtatgcctgttaattggatattagccagaatgacttttgtcatcctcagGGCAATCAATCTCAGAGAGTGGTGATCTCAAGGAGGCTCTCAAAGTGTGATTCTGAgtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from Exonerate_coding2genome ggtatgcctgttaattggatattagccagaatgacttttgtcatcctcagggcaatcaatctcagagagtggtgatctcaaggaggctctcaaagtgtgattctgagtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca Alignment from GeneWise GGACAACCCATCTCA------GAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGAGCCAGAA-- GGTATGCCTGTTAATTGGATATTAGCCAGAATGACTTTTGTCATCCTCAGGGCAATCAATCTCAGAGAGTGgtgatctcaaggaggctctcaaagtgtgattctgagtaagacttctctcgtgatcatgttgctcaattttctgttgggtgtggca #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCAT-GCTCCCTGCACCCCACACACCTCATACag ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATCGCATCTTGCACTCCCCACACATCATACaggtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCAT-GCTCCCTGCACCCCACACACCTCATACag ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATCGCATCTTGCACTCCCCACACATCATACaggtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCAT-GCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATcGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCAT-GCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATCGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTG-----CGCATGCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATCGCAT----CTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCAT-GCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATCGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCAT-GCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATCGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCG-CATGCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATCGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGcTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATG-TTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATC-ATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagccttccataacatccttgccaacgacacctttcctttttttctagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGCTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtaagtagagaatttgccaaggctaggaaagaccactgggaatcagtctc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTC-ATCGTGCGGACCACGCAG agaggcactttacaacaaaccaacaacacaggctttattcttccttttagaaCACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCTTACACAGCTTTCAAGTCCATTGTGCGAACAATGCAGgtgagtgacatcaccgggtgtaaatagctattgacgtctctgtctgtctt Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTC-ATCGTGCGGACCACGCAG agaggcactttacaacaaaccaacaacacaggctttattcttccttttagaaCACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCTTACACAGCTTTCAAGTCCATTGTGCGAACAATGCAGgtgagtgacatcaccgggtgtaaatagctatccatctctgttgctcttta Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTC-ATCGTGCGGACCACGCAG agaggcactttacaacaaaccaacaacacaggctttattcttccttttagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCTTACACAGCTTTCAAGTCcATTGTGCGAACAATGCAGgtgagtgacatcaccgggtgtaaatagctattgacgtctctgtctgtctt Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTC-ATCGTGCGGACCACGCAG agaggcactttacaacaaaccaacaacacaggctttattcttccttttagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCTTACACAGCTTTCAAGTCCATTGTGCGAACAATGCAGgtgagtgacatcaccgggtgtaaatagctattgacgtctctgtctgtctt Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGT-CATCGTGCGGACCACGCAG agaggcactttacaacaaaccaacaacacaggctttattcttccttttagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCTTACACAGCTTTCAAGTCCATTGTGCGAACAATGCAGgtgagtgacatcaccgggtgtaaatagctattgacgtctctgtctgtctt Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTC-ATCGTGCGGACCACGCAG agaggcactttacaacaaaccaacaacacaggctttattcttccttttagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCTTACACAGCTTTCAAGTCCATTGTGCGAACAATGCAGgtgagtgacatcaccgggtgtaaatagctattgacgtctctgtctgtctt Alignment from Exonerate_coding2genome agaggcactttacaacaaaccaacaacacaggctttattcttccttttagaacaccaaaacttctttggactagatgaggcactaggccctgtggctttgagtctccaacgggaggaaaaggagggcagtggaggggcccccttacacagctttcaagtccattgtgcgaacaatgcaggtgagtgacatcaccgggtgtaaatagctattgacgtctctgtctgtctt Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATC- -----------GTGCGGACCACG agaggcactttacaacaaaccaacaacacaggctttattcttccttttagAACACCAAAACTTCTTTGGACTAGATGAGGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCTTACACAGCTTTCAAGTCCATTgtgcgaacaatgcaggtgagtgacatcaccgggtgtaaatagCTATTGACGTCTCTGTCTGTCTT #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAAC-ATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgaccatgactccttctgtgccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACTAATCCTAACCATATCTCTGTTGCTGAGATCAGACAGCAGTAACTACAGAgtaagttgctactacatgattatatcacaatgaggaaagttgggacagca Alignment from CESAR ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAAC-ATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgaccatgactccttctgtgccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACTAATCCTAACCATATCTCTGTTGCTGAGATCAGACAGCAGTAACTACAGAgtaagttgctactacatgattatatcacaatgaggaaagttgggacagca Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAAC-ATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgaccatgactccttctgtgccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACTAATCCTAACcATATCTCTGTTGCTGAGATCAGACAGCAGTAACTACAGAgtaagttgctactacatgattatatcacaatgaggaaagttgggacagca Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAAC-ATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgaccatgactccttctgtgccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACTAATCCTAACCATATCTCTGTTGCTGAGATCAGACAGCAGTAACTACAGAgtaagttgctactacatgattatatcacaatgaggaaagttgggacagca Alignment from Pairagon ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAA-CATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgaccatgactccttctgtgccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACTAATCCTAACCATATCTCTGTTGCTGAGATCAGACAGCAGTAACTACAGAgtaagttgctactacatgattatatcacaatgaggaaagttgggacagca Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAAC-ATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgaccatgactccttctgtgccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACTAATCCTAACCATATCTCTGTTGCTGAGATCAGACAGCAGTAACTACAGAgtaagttgctactacatgattatatcacaatgaggaaagttgggacagca Alignment from Exonerate_coding2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAAC-ATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgaccatgactccttctgtgccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACTAATCCTAACCATATCTCTGTTGCTGAGATCAGACAGCAGTAACTACAGAgtaagttgctactacatgattatatcacaatgaggaaagttgggacagca Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAAC-ATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgaccatgactccttctgtgccgcagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACTAATCCTAACCATATCTCTGTTGCTGAGATCAGACAGCAGTAACTACAGAgtaagttgctactacatgattatatcacaatgaggaaagttgggacagca #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTC-CAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctATTCAACTCTTTGTAATTCCAA---TCCTGCATACTTCCGGATgtacggagctgggaatttacagcacggttaaatttttcagatggacattt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctATTCAACTCTTTGTAATT--CCAATCCTGCATACTTCCGGATgtacggagctgggaatttacagcacggttaaatttttcgttttgtctgac Alignment from Spaln_aa2Genome CATCCCGAGT gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctattcaactctttgtaattccaatcctgcatacttccggatgtacggagctgggaatttacagcacggttaaatttttcagATGGACATTT Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagCTATTCAACTCTTTGTAATTC--CAATCCTGCATACTTCCGGATgtacggagctgggaatttacagcacggttaaatttttcagatggacattt Alignment from Pairagon CTATTCAGCTCTTT gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagCTATTCAACTCTTTgtaattccaatcctgcatacttccggatgtacggagctgggaatttacagcacggttaaatttttcagatggacattt Alignment from Exonerate_protein2genome CATCCCGAGT gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctattcaactctttgtaattccaatcctgcatacttccggatgtacggagctgggaatttacagcacggttaaatttttcagATGGACATTT Alignment from Exonerate_coding2genome CATCCCGAGT gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctattcaactctttgtaattccaatcctgcatacttccggatgtacggagctgggaatttacagcacggttaaatttttcagATGGACATTT Alignment from GeneWise CATCCCGAGT gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctattcaactctttgtaattccaatcctgcatacttccggatgtacggagctgggaatttacagcacggttaaatttttcagATGGACATTT #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTT-GGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccaggTGGCTGTGTGCCCTTTTGGGAATGACAGTAGTACGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from CESAR gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTT-GGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccaggTGGCTGTGTGCCCTTTTGGGAATGACAGTAGTACGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTT-GGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGACAGTAGTAcGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGG-ATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGACAGTAGTACGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Pairagon GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGT-TGGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGACAGTAGTACGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTT-GGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGACAGTAGTACGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from Exonerate_coding2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTT-GGGATCAGCATTTTATGT atggatgcagttttccctcactagagagctggttcgacttttctacccagGTGGCTGTGTGCCCTTTTGGGAATGACAGTAGTACGGCATCACCATCTTATGTgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag Alignment from GeneWise atggatgcagttttccctcactagagagctggttcgacttttctacccaggtggctgtgtgcccttttgggaatgacagtagtacggcatcaccatcttatgtgtaagtcaggggggacagtatccttagtcccaaatgtggatctcaatcag #### Slc22a20_ID1345_8 --> 2 - 2 Original Alignment atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTG-GCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag ttaccagtacatgcaggtccagctcagatggttctctcctctcttcccaggtCAGCAGATGTTGCGAACTGTACCGGCTGAACTAGGGAAGGGCTGTCTGCGCGAGCTCGTTCGTCTGTGTGTACCTTTTTATGGGGGGACTGTATCCA------ATCaggtaattatgggaggatgccaccatagctaagctgcaatttaggttaccac Alignment from CESAR atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTG-GCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag ttaccagtacatgcaggtccagctcagatggttctctcctctcttcccaggtCAGCAGATGTTGCGAACTGTACCGGCTGAACTAGGGAAGGGCTGTCTGCGCGAGCTCGTTCGTCTGTGTGTACCTTTTTATGGGGGGACTGTATCCA------ATCaggtaattatgggaggatgccaccatagctaagctgcaatttaggttaccac Alignment from Spaln_aa2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTG-GCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttaccagtacatgcaggtccagctcagatggttctctcctctcttcccagGTCAGCAGATGTTGCGAACTGTACCGGCTGAACTAGGGAAGGGCTGTCTGcGCGAGCTCGTTCGTCTGTGTGTACCTTTTTATGGGGGGACTGTATCCA------ATCAGgtaattatgggaggatgccaccatagctaagctgcaatttaggttaccac Alignment from Spaln_nt2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTG-GCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttaccagtacatgcaggtccagctcagatggttctctcctctcttcccagGTCAGCAGATGTTGCGAACTGTACCGGCTGAACTAGGGAAGGGCTGTCTGCGCGAGCTCGTTCGTCTGTGTGTACCTTTTTATGGGGGGACTGTATCC------AATCAGgtaattatgggaggatgccaccatagctaagctgcaatttaggttaccac Alignment from Pairagon ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTG-GCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG ttaccagtacatgcaggtccagctcagatggttctctcctctcttcccagGTCAGCAGATGTTGCGAACTGTACCGGCTGAACTAGGGAAGGGCTGTCTGCGCGAGCTCGTTCGTCTGTGTGTACCTTTTTATGGGGGGACTGTATCC------AATCAGgtaattatgggaggatgccaccatagctaagctgcaatttaggttaccac Alignment from Exonerate_protein2genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTG-GCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGA ttaccagtacatgcaggtccagctcagatggttctctcctctcttcccagGTCAGCAGATGTTGCGAACTGTACCGGCTGAACTAGGGAAGGGCTGTCTGCGCGAGCTCGTTCGTCTGTGTGTACCTTTTTATGGGGGGACTGTATCCAATCAGgtaattatgggaggatgccaccatagctaagctgcaatttaggttaccac Alignment from Exonerate_coding2genome ttaccagtacatgcaggtccagctcagatggttctctcctctcttcccaggtcagcagatgttgcgaactgtaccggctgaactagggaagggctgtctgcgcgagctcgttcgtctgtgtgtacctttttatggggggactgtatccaatcaggtaattatgggaggatgccaccatagctaagctgcaatttaggttaccac Alignment from GeneWise ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTG-GCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACT ttaccagtacatgcaggtccagctcagatggttctctcctctcttcccagGTCAGCAGATGTTGCGAACTGTACCGGCTGAACTAGGGAAGGGCTGTCTGCGCGAGCTCGTTCGTCTGTGTGTACCTTTTTATGGGGGGACTgtatccaatcaggtaattatgggaggatgccaccatagctaagctgcaatttaggttaccac #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCC-ATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTCATCTATATGTCTGGAGTATCAGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACaggtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCC-ATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTCATCTATATGTCTGGAGTATCAGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACaggtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCC-ATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTcATCTATATGTCTGGAGTATCAGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTC-CATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTCATCTATATGTCTGGAGTATCAGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTC-CATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTCATCTATATGTCTGGAGTATCAGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCC-ATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTCATCTATATGTCTGGAGTATCAGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCC-ATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTCATCTATATGTCTGGAGTATCAGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAG-TCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggcatagtaaccgcacaatcatagcccagagactccactttgtcaattagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCCCAATCTCATCTATATGTCTGGAGTATCAGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgagttgcttggatggcaacatctattcccttactctttattgtaattt #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAG-CTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATG---ATGTTTGGCTACCTGGCGGACag ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGACTTGGCCCAGTCACTATTCATGGTAGGAGTG---TTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATaggtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAG-CTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATG---TTTGGCTACCTGGCGGACag ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGACTTGGCCCAGTCACTATTCATGGTAGGAGTGTTT---GGTGCCATGATGTTGTTTGGTTACCTTTCAGATaggtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAG-CTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGAcTTGGCCCAGTCACTATTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCT-GGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTT---TGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGACTTGGCCCAGTCACTATTCATGGTAGGAGTGT---TTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGC-TGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGA---TGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGACTTGGCCCAGTCACTATTCATGGTAGGAGTGT---TTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAG-CTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGACTTGGCCCAGTCACTATTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from Exonerate_coding2genome ggctactaaaattgacatatttcagatcggcacggttgctctctccacagtggaacctttgctcacatagagcctttcaccgacttggcccagtcactattcatggtaggagtgtttggtgccatgatgttgtttggttacctttcagataggtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGC-CAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ggctactaaaattgacatatttcagatcggcacggttgctctctccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGACTTGGCCCAGTCACTATTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgtaggacatcagtactgaaaatgccatatttgtacctaatagttttaagg #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAG-GGGGCTAAGCTGAGTATAGAG aaacttaatgagtaactatatccatctcctgttgtctgcctcctttacaggTTCTTCATTGAGTCAACGCGGTGGTACTCATCATCTGGTAGGCTGGACTTCACCCTCCGAGCTTTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAACGGGCCTAAACTGTGCATTGAGgtacgttctatttattcctagacactgcctgtaatcttactctggttcat Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAG-GGGGCTAAGCTGAGTATAGAG aaacttaatgagtaactatatccatctcctgttgtctgcctcctttacaggTTCTTCATTGAGTCAACGCGGTGGTACTCATCATCTGGTAGGCTGGACTTCACCCTCCGAGCTTTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAACGGGCCTAAACTGTGCATTGAGgtacgttctatttattcctagacactgcctgtaatcttactctggttcat Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAG-GGGGCTAAGCTGAGTATAGAG aaacttaatgagtaactatatccatctcctgttgtctgcctcctttacagGTTCTTCATTGAGTCAACGCGGTGGTACTCATCATCTGGTAGGCTGGACTTCACCCTCCGAGCTTTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAAcGGGCCTAAACTGTGCATTGAGgtacgttctatttattcctagacactgcctgtaatcttactctggttcat Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGC-TAAGCTGAGTATAGAG aaacttaatgagtaactatatccatctcctgttgtctgcctcctttacagGTTCTTCATTGAGTCAACGCGGTGGTACTCATCATCTGGTAGGCTGGACTTCACCCTCCGAGCTTTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAACGGGCCTAAACTGTGCATTGAGgtacgttctatttattcctagacactgcctgtaatcttactctggttcat Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAG-GGGGCTAAGCTGAGTATAGAG aaacttaatgagtaactatatccatctcctgttgtctgcctcctttacagGTTCTTCATTGAGTCAACGCGGTGGTACTCATCATCTGGTAGGCTGGACTTCACCCTCCGAGCTTTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAACGGGCCTAAACTGTGCATTGAGgtacgttctatttattcctagacactgcctgtaatcttactctggttcat Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAG-GGGGCTAAGCTGAGTATAGAG aaacttaatgagtaactatatccatctcctgttgtctgcctcctttacagGTTCTTCATTGAGTCAACGCGGTGGTACTCATCATCTGGTAGGCTGGACTTCACCCTCCGAGCTTTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAACGGGCCTAAACTGTGCATTGAGgtacgttctatttattcctagacactgcctgtaatcttactctggttcat Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAG-GGGGCTAAGCTGAGTATAGAG aaacttaatgagtaactatatccatctcctgttgtctgcctcctttacagGTTCTTCATTGAGTCAACGCGGTGGTACTCATCATCTGGTAGGCTGGACTTCACCCTCCGAGCTTTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAACGGGCCTAAACTGTGCATTGAGgtacgttctatttattcctagacactgcctgtaatcttactctggttcat Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAA-GAGGGGGCTAAGCTGAGTATAGAG aaacttaatgagtaactatatccatctcctgttgtctgcctcctttacagGTTCTTCATTGAGTCAACGCGGTGGTACTCATCATCTGGTAGGCTGGACTTCACCCTCCGAGCTTTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAACGGGCCTAAACTGTGCATTGAGgtacgttctatttattcctagacactgcctgtaatcttactctggttcat #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACA-AGTGAGCTCTACCCTACAGTCCTCag tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagaaATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCTGCCTCTTCTTTTACACTCAGTGAGCTCTACCCCAGAGTCCTCaggtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACA-AGTGAGCTCTACCCTACAGTCCTCag tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagaaATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCTGCCTCTTCTTTTACACTCAGTGAGCTCTACCCCAGAGTCCTCaggtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACA-AGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCTGCCTCTTCTTTTACACTcAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACA-AGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCTGCCTCTTCTTTTACACTCAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACAC-AAGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCTGCCTCTTCTTTTACACTCAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACA-AGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCTGCCTCTTCTTTTACACTCAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACA-AGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCTGCCTCTTCTTTTACACTCAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACA-AGTGAGCTCTACCCTACAGTCCTCAG tgtcccctagcaaatttacatgcaaaggagagtgtctcactttactttagAAATGGAGATAGTGAGGACAGCACTGGCTGTGTTTGGCATGGGATGCTTATCTGGCTCCTTCAGCTGCCTCTTCTTTTACACTCAGTGAGCTCTACCCCAGAGTCCTCAGgtaagaagtgtacttgggtcaggagaccacttaaagagttgaattctcaa #### Slc25a28_ID8782_3 --> 2 - 1 Original Alignment gtGCAGCCGGATGTGTGGCGACATTACTTCATGAT-GCAGCCATGAATCCAGCGGAAg gtcagtgtttcgacaacatgttgtctggatatcgtcattatacattgaaggtGCAGCTGGTTGTGTAGCAACACTGCTGCATGATCGCTGCCATGAATCCAGCAGAAggtgagcctccacttgccgtgttgacctgcttgtatcctaagcccaacaga Alignment from CESAR gtGCAGCCGGATGTGTGGCGACATTACTTCATGAT-GCAGCCATGAATCCAGCGGAAg gtcagtgtttcgacaacatgttgtctggatatcgtcattatacattgaaggtGCAGCTGGTTGTGTAGCAACACTGCTGCATGATCGCTGCCATGAATCCAGCAGAAggtgagcctccacttgccgtgttgacctgcttgtatcctaagcccaacaga Alignment from Spaln_aa2Genome GTGCAGCCGGATGTGTGGCGACATTACTTCATGAT-GCAGCCATGAATCCAGCGGAAG gtcagtgtttcgacaacatgttgtctggatatcgtcattatacattgaagGTGCAGCTGGTTGTGTAGCAACACTGCTGCATGATcGCTGCCATGAATCCAGCAGAAGgtgagcctccacttgccgtgttgacctgcttgtatcctaagcccaacaga Alignment from Spaln_nt2Genome GTGCAGCCGGATGTGTGGCGACATTACTTCATGAT-GCAGCCATGAATCCAGCGGAAG gtcagtgtttcgacaacatgttgtctggatatcgtcattatacattgaagGTGCAGCTGGTTGTGTAGCAACACTGCTGCATGATCGCTGCCATGAATCCAGCAGAAGgtgagcctccacttgccgtgttgacctgcttgtatcctaagcccaacaga Alignment from Pairagon GTGCAGCCGGATGTGTGGCGACATTACTTCATGAT-GCAGCCATGAATCCAGCGGAAG gtcagtgtttcgacaacatgttgtctggatatcgtcattatacattgaagGTGCAGCTGGTTGTGTAGCAACACTGCTGCATGATCGCTGCCATGAATCCAGCAGAAGgtgagcctccacttgccgtgttgacctgcttgtatcctaagcccaacaga Alignment from Exonerate_protein2genome GTGCAGCCGGATGTGTGGCGACATTACTTCATGAT-GCAGCCATGAATCCAGCGGAAG gtcagtgtttcgacaacatgttgtctggatatcgtcattatacattgaagGTGCAGCTGGTTGTGTAGCAACACTGCTGCATGATCGCTGCCATGAATCCAGCAGAAGgtgagcctccacttgccgtgttgacctgcttgtatcctaagcccaacaga Alignment from Exonerate_coding2genome AATCCAG GTCAGTGtttcgacaacatgttgtctggatatcgtcattatacattgaaggtgcagctggttgtgtagcaacactgctgcatgatcgctgccatgaatccagcagaaggtgagcctccacttgccgtgttgacctgcttgtatcctaagcccaacaga Alignment from GeneWise gtcagtgtttcgacaacatgttgtctggatatcgtcattatacattgaaggtgcagctggttgtgtagcaacactgctgcatgatcgctgccatgaatccagcagaaggtgagcctccacttgccgtgttgacctgcttgtatcctaagcccaacaga #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGGCACCCA-TTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaaggaGCTGTGGGCCTGGTCCTGGGGCACCCACTTTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCA-TTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaaggaGCTGTGGGCCTGGTCCTGGGGCACCCACTTTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCA-TTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaagGAGCTGTGGGCCTGGTCCTGGGGCACCCAcTTTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCA-TTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaagGAGCTGTGGGCCTGGTCCTGGGGCACCCACTTTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCA-TTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaagGAGCTGTGGGCCTGGTCCTGGGGCACCCACTTTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCA-TTCGACACTGTAAAG atgggcatgttacgtgggcctggcattttttccattttttttctgtgaagGAGCTGTGGGCCTGGTCCTGGGGCACCCACTTTGACACTGTAAAGgtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from Exonerate_coding2genome atgggcatgttacgtgggcctggcattttttccattttttttctgtgaaggagctgtgggcctggtcctggggcacccactttgacactgtaaaggtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt Alignment from GeneWise atgggcatgttacgtgggcctggcattttttccattttttttctgtgaaggagctgtgggcctggtcctggggcacccactttgacactgtaaaggtaaggaacatgctgggatgagagcaagtgttgcaaagttgggtgtgggt #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTC-ACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgtaatgaatacttccatggctatccagatattttcttctccacttttagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtaagcactggtgatagttcacagcatggaacaggggagccagaggtatt Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTC-ACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgtaatgaatacttccatggctatccagatattttcttctccacttttagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtaagcactggtgatagttcacagcatggaacaggggagccagagggctt Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTC-ACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgtaatgaatacttccatggctatccagatattttcttctccacttttagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAcACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagcactggtgatagttcacagcatggaacaggggagccagaggtatt Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGT-CACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgtaatgaatacttccatggctatccagatattttcttctccacttttagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagcactggtgatagttcacagcatggaacaggggagccagaggtatt Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGT-CACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgtaatgaatacttccatggctatccagatattttcttctccacttttagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagcactggtgatagttcacagcatggaacaggggagccagaggtatt Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTC-ACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgtaatgaatacttccatggctatccagatattttcttctccacttttagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagcactggtgatagttcacagcatggaacaggggagccagaggtatt Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTC-ACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgtaatgaatacttccatggctatccagatattttcttctccacttttagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagcactggtgatagttcacagcatggaacaggggagccagaggtatt Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACA-GTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgtaatgaatacttccatggctatccagatattttcttctccacttttagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaagcactggtgatagttcacagcatggaacaggggagccagaggtatt #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGT-TGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcaggtCTGTTCTTCAACCCTATCTGCCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from CESAR gtCTGTTCTTCAACCCTATCTGT-TGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcaggtCTGTTCTTCAACCCTATCTGCCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGT-TGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCcTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGT-TGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Pairagon GTCTGTTCTTCAACCCTATCTG-TTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGT-TGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGT-TGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGT-TGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCAC-ATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG ataacaagacaagttatcattttattaaaacgagaattctgatctttcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACCATCCCAAGACCTGTAAGAATTAACATGACAGTGAAAgtgagtagacacaggctgcttcttaaagtagtcaagagctaaagaggaat Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCAC-ATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG ataacaagacaagttatcattttattaaaacgagaattctgatctttcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACCATCCCAAGACCTGTAAGAATTAACATGACAGTGAAAgtgagtagacacaggctgcttcttaaagtagtcaagagctaaagaggaat Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCAC-ATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG ataacaagacaagttatcattttattaaaacgagaattctgatctttcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACcATCCCAAGACCTGTAAGAATTAACATGACAGTGAAAgtgagtagacacaggctgcttcttaaagtagtcaagagctaaagaggaat Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATC-TTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG ataacaagacaagttatcattttattaaaacgagaattctgatctttcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACCATCCCAAGACCTGTAAGAATTAACATGACAGTGAAAgtgagtagacacaggctgcttcttaaagtagtcaagagctaaagaggaat Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCA-CATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG ataacaagacaagttatcattttattaaaacgagaattctgatctttcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACCATCCCAAGACCTGTAAGAATTAACATGACAGTGAAAgtgagtagacacaggctgcttcttaaagtagtcaagagctaaagaggaat Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCAC-ATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG ataacaagacaagttatcattttattaaaacgagaattctgatctttcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACCATCCCAAGACCTGTAAGAATTAACATGACAGTGAAAgtgagtagacacaggctgcttcttaaagtagtcaagagctaaagaggaat Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCAC-ATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG ataacaagacaagttatcattttattaaaacgagaattctgatctttcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACCATCCCAAGACCTGTAAGAATTAACATGACAGTGAAAgtgagtagacacaggctgcttcttaaagtagtcaagagctaaagaggaat Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTT-CACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG ataacaagacaagttatcattttattaaaacgagaattctgatctttcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACCATCCCAAGACCTGTAAGAATTAACATGACAGTGAAAgtgagtagacacaggctgcttcttaaagtagtcaagagctaaagaggaat #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCA-GACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCACGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCA-GACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCACGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCA-GACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCAcGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCA-GACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCACGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCA-GACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCACGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCA-GACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCACGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCA-GACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG tgaacatgtgggtcggaggggcaagtgttttttctggtttgtgtgatcagGTGTCACAGGCAGGACTTCTTGCACGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg Alignment from GeneWise --------------------------------------------------GTGTCGCAAGCAGGACTCCTC-GCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG TGAACATGTGGGTCGGAGGGGCAAGTGTTTTTTCTGGTTTGTGTGATCAGGTGTCACAGGCAGGACTTCTTGCACGACTTCATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgagtgcccactcattgtgttgcatggaaacagtgtgttatgctatgcg #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTGGCT-GAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCACGAATGGCAGAACATCTCCAAGAACCTT---GAAGACaggtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from CESAR AATGCACCCTTGTACTTGGCT-GAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCACGAATGGCAGAACATCTCCAAGAACCTT---GAAGACaggtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTGGCT-GAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCAcGAATGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTGGCT-GAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCACGAATGGCAGAACATCTCCAAGAACCT---TGAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Pairagon AATGCACCCTTGTACTTGGC-TGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCACGAATGGCAGAACATCTCCAAGAACCT---TGAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTGGCT-GAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagAATGCACCCTTGTACTTAGCACGAATGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from Exonerate_coding2genome ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagaatgcacccttgtacttagcacgaatggcagaacatctccaagaaccttgaagacaggtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa Alignment from GeneWise ccatggtgggttcatgttctgtgtgtgaactttttgtcttctcggttcagaatgcacccttgtacttagcacgaatggcagaacatctccaagaaccttgaagacaggtaaggaggcaccactgtattctagtaactccttctaagcactctttgaa #### Slit1_ID8231_8 --> 1 - 1 Original Alignment cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGG-CCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAggtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from CESAR cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCC-GCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAggtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Spaln_aa2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCC-AGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCCAGTtAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Spaln_nt2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCC-GCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Pairagon CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCC-GCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Exonerate_protein2genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCC-AGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Exonerate_coding2genome CGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCC-AGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from GeneWise CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCC-GCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACCACCATC-CCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt cggtcccttttaggcatgggtggccaggatacatcactgtcttgttctagtCCACTCAATAATAATAACATCAGTGCTATCCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtaaggcgtcttggctattggtgcatcaccttgactgtggataaagtgta Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt cggtcccttttaggcatgggtggccaggatacatcactgtcttgttctagtCCACTCAATAATAATAACATCAGTGCTATCC-----CCCCGTTTCAATCATATCCCTAAGCTCCACACTttgtaaggcgtcttggctattggtgcatcaccttgactgtggataaagtgta Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cggtcccttttaggcatgggtggccaggatacatcactgtcttgttctagTCCACTCAATAATAATAACATCAGTGCTATCCCCC-----CGTTTCAATCATATCCCTAAGCTCCACACTTTgtaaggcgtcttggctattggtgcatcaccttgactgtggataaagtgta Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cggtcccttttaggcatgggtggccaggatacatcactgtcttgttctagTCCACTCAATAATAATAACATCAGTGCTATCCC-----CCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtaaggcgtcttggctattggtgcatcaccttgactgtggataaagtgta Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cggtcccttttaggcatgggtggccaggatacatcactgtcttgttctagTCCACTCAATAATAATAACATCAGTGCTATCCC-----CCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtaaggcgtcttggctattggtgcatcaccttgactgtggataaagtgta Alignment from Exonerate_protein2genome TGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cggtcccttttaggcatgggtggccaggatacatcactgtcttgttctagTCCACTCAATAATAATAACATCAGTGCTATCCCCCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtaaggcgtcttggctattggtgcatcaccttgactgtggataaagtgta Alignment from Exonerate_coding2genome cggtcccttttaggcatgggtggccaggatacatcactgtcttgttctagtccactcaataataataacatcagtgctatccccccgtttcaatcatatccctaagctccacactttgtaaggcgtcttggctattggtgcatcaccttgactgtggataaagtgta Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cggtcccttttaggcatgggtggccaggatacatcactgtcttgttctagTCCACTCAATAATAATAACATCAGTGCTATCCCCC--CGT---TTCAATCATATCCCTAAGCTCCACACTTTgtaaggcgtcttggctattggtgcatcaccttgactgtggataaagtgta #### Slit1_ID8233_6 --> 1 - 2 Original Alignment aCAGCTGGACAAGAACCGGATCAGCTGC-ATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagaCAGCTGGACAAGAACCGCATTAGCTGCCATCAAGGAAGGGGCCCTCCGTGCCCTACGCGGGTTGGATGTTctgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from CESAR aCAGCTGGACAAGAACCGGATCAGCTGC-ATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagaCAGCTGGACAAGAACCGCATTAGCTGCCATCAAGGAAGGGGCCCTCCGTGCCCTACGCGGGTTGGATGTTctgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Spaln_aa2Genome ACAGCTGGACAAGAACCGGATCAGCTGC-ATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCcATCAAGGAAGGGGCCCTCCGTGCCCTACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Spaln_nt2Genome ACAGCTGGACAAGAACCGGATCAGCTGC-ATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCCATCAAGGAAGGGGCCCTCCGTGCCCTACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Pairagon ACAGCTGGACAAGAACCGGATCAGCTG-CATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCCATCAAGGAAGGGGCCCTCCGTGCCCTACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Exonerate_protein2genome ACAGCTGGACAAGAACCGGATCAGCTGC-ATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCCATCAAGGAAGGGGCCCTCCGTGCCCTACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from Exonerate_coding2genome CAGCTGGACAAGAACCGGATCAGCTGC-ATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagaCAGCTGGACAAGAACCGCATTAGCTGCCATCAAGGAAGGGGCCCTCCGTGCCCTACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg Alignment from GeneWise ACAGCTGGACAAGAACCGGATCAGCTGC-ATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgaaacttttcttctggttactttcctggatatgtttcgtcttctagACAGCTGGACAAGAACCGCATTAGCTGCCATCAAGGAAGGGGCCCTCCGTGCCCTACGCGGGTTGGATGTTCTgtaagtggagtatgagggttaagttggagcgtcaatactgttcttcaatg #### Slk_ID10264_16 --> 0 - 0 Original Alignment GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCC-ATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from CESAR GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCC-ATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Spaln_aa2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCC-ATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCcATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Spaln_nt2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGC-CATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Pairagon GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGG-CCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Exonerate_protein2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCC-ATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Exonerate_coding2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCC-ATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from GeneWise GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATG-GCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAAAAG-AGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from CESAR TTTGCTGCACAAGAAGAAAAG-AGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAG-AGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGcCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAAAAGA-GACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Pairagon TTTGCTGCACAAGAAGAAAAG-AGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAG-AGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAG-AGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from GeneWise GAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagtttgctgcacaagACAAAAAGCCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac ttattctggctggccacctgggctctctcacttctccccgcgaccctcagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaaggattctttctactcatagagtgttacagttgatccagacacatag Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac ttattctggctggccacctgggctctctcacttctccccgcgaccctcagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaaggattctttctactcatagagtgttacagttgatccagacacatag Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttattctggctggccacctgggctctctcacttctccccgcgaccctcagATTGATAAAGAGGAAGTTTCACTTCGAcAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctactcatagagtgttacagttgatccagacacatag Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttattctggctggccacctgggctctctcacttctccccgcgaccctcagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctactcatagagtgttacagttgatccagacacatag Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttattctggctggccacctgggctctctcacttctccccgcgaccctcagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctactcatagagtgttacagttgatccagacacatag Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttattctggctggccacctgggctctctcacttctccccgcgaccctcagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctactcatagagtgttacagttgatccagacacatag Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttattctggctggccacctgggctctctcacttctccccgcgaccctcagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctactcatagagtgttacagttgatccagacacatag Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGA-AGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttattctggctggccacctgggctctctcacttctccccgcgaccctcagATTGATAAAGAGGAAGTTTCACTTCGACAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctactcatagagtgttacagttgatccagacacatag #### Smc3_ID11322_10 --> 0 - 0 Original Alignment CTTTCTGCTAAGCGAGAAACGAGTGGAGAG-AAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from CESAR CTTTCTGCTAAGCGAGAAACGAGTGGAGAG-AAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Spaln_aa2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAG-AAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGcAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Spaln_nt2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAG-AAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Pairagon CTTTCTGCTAAGCGAGAAACGAGTGGAGAG-AAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Exonerate_protein2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAG-AAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Exonerate_coding2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAG-AAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGCAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from GeneWise CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagctttcagCTAAGCAGGAAACAAGTGGAGAGC------AAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccatgcattatactttctttttcccacactacttagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtgagacaaaaagaaaactgatcagatttcagtgtagtggagaagacact Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccatgcattatactttctttttcccacactacttagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtgagacaaaaagaaaactgatcagatttcagtgtagtggagaagacact Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccatgcattatactttctttttcccacactacttagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAcAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtgagacaaaaagaaaactgatcagatttcagtgtagtggagaagacact Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccatgcattatactttctttttcccacactacttagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtgagacaaaaagaaaactgatcagatttcagtgtagtggagaagacact Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccatgcattatactttctttttcccacactacttagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtgagacaaaaagaaaactgatcagatttcagtgtagtggagaagacact Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccatgcattatactttctttttcccacactacttagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtgagacaaaaagaaaactgatcagatttcagtgtagtggagaagacact Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccatgcattatactttctttttcccacactacttagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtgagacaaaaagaaaactgatcagatttcagtgtagtggagaagacact Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccatgcattatactttctttttcccacactacttagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTCAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtgagacaaaaagaaaactgatcagatttcagtgtagtggagaagacact #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTCAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTCAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAA-GTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTCAAAAAaGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTCAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGG-GAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTCAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTCAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTCAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTCAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAA-AGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAACAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAA-AGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAACAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAA-AGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAcAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAA-AGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAACAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAA-AGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAACAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAA-AGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAACAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAA-AGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAACAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACT-GAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAACAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc #### Smc5_ID5118_15 --> 0 - 2 Original Alignment GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGG-CACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAag attcacagtttctatactggcttaatgctcttaattactaattactgcagGAAACAAATAGGCAACTGGAGGCAGTTGACTCAGGGTTGGTTGTACTGCGTGATGCAAACAGGCCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGGAGAAGGAGCTTCTTGAACGAGAAACCAGAAAAAGGCAGCTGGAGCAAAAAGTCAGCTCCAAGCCAGGGaggtaccatgtattgaggatgtgaggccagggagataacgcaataatttgtg Alignment from CESAR GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGG-CACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAag attcacagtttctatactggcttaatgctcttaattactaattactgcagGAAACAAATAGGCAACTGGAGGCAGTTGACTCAGGGTTGGTTGTACTGCGTGATGCAAACAGGCCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGGAGAAGGAGCTTCTTGAACGAGAAACCAGAAAAAGGCAGCTGGAGCAAAAAGTCAGCTCCAAGCCAGGGaggtaccatgtattgaggatgtgaggccagggagataacgcaataatttgtg Alignment from Spaln_aa2Genome GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGG-CACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG attcacagtttctatactggcttaatgctcttaattactaattactgcagGAAACAAATAGGCAACTGGAGGCAGTTGACTCAGGGTTGGTTGTACTGCGTGATGCAAACAGGcCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGGAGAAGGAGCTTCTTGAACGAGAAACCAGAAAAAGGCAGCTGGAGCAAAAAGTCAGCTCCAAGCCAGGGAGgtaccatgtattgaggatgtgaggccagggagataacgcaataatttgtg Alignment from Spaln_nt2Genome GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGG-CACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG attcacagtttctatactggcttaatgctcttaattactaattactgcagGAAACAAATAGGCAACTGGAGGCAGTTGACTCAGGGTTGGTTGTACTGCGTGATGCAAACAGGCCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGGAGAAGGAGCTTCTTGAACGAGAAACCAGAAAAAGGCAGCTGGAGCAAAAAGTCAGCTCCAAGCCAGGGAGgtaccatgtattgaggatgtgaggccagggagataacgcaataatttgtg Alignment from Pairagon GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGG-CACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG attcacagtttctatactggcttaatgctcttaattactaattactgcagGAAACAAATAGGCAACTGGAGGCAGTTGACTCAGGGTTGGTTGTACTGCGTGATGCAAACAGGCCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGGAGAAGGAGCTTCTTGAACGAGAAACCAGAAAAAGGCAGCTGGAGCAAAAAGTCAGCTCCAAGCCAGGGAGgtaccatgtattgaggatgtgaggccagggagataacgcaataatttgtg Alignment from Exonerate_protein2genome GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGG-CACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG attcacagtttctatactggcttaatgctcttaattactaattactgcagGAAACAAATAGGCAACTGGAGGCAGTTGACTCAGGGTTGGTTGTACTGCGTGATGCAAACAGGCCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGGAGAAGGAGCTTCTTGAACGAGAAACCAGAAAAAGGCAGCTGGAGCAAAAAGTCAGCTCCAAGCCAGGGAGgtaccatgtattgaggatgtgaggccagggagataacgcaataatttgtg Alignment from Exonerate_coding2genome GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGG-CACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG attcacagtttctatactggcttaatgctcttaattactaattactgcagGAAACAAATAGGCAACTGGAGGCAGTTGACTCAGGGTTGGTTGTACTGCGTGATGCAAACAGGCCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGGAGAAGGAGCTTCTTGAACGAGAAACCAGAAAAAGGCAGCTGGAGCAAAAAGTCAGCTCCAAGCCAGGGAGgtaccatgtattgaggatgtgaggccagggagataacgcaataatttgtg Alignment from GeneWise GAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAAC-AGGCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAAG attcacagtttctatactggcttaatgctcttaattactaattactgcagGAAACAAATAGGCAACTGGAGGCAGTTGACTCAGGGTTGGTTGTACTGCGTGATGCAAACAGGCCACCTCGAGCTTAAAGATAATGAGCTAAAGCTGAAGGAGAAGGAGCTTCTTGAACGAGAAACCAGAAAAAGGCAGCTGGAGCAAAAAGTCAGCTCCAAGCCAGGGAGgtaccatgtattgaggatgtgaggccagggagataacgcaataatttgtg #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAG-GCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGCGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAggtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAG-GCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGCGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAggtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAG-GCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGcGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAG-GCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGCGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAG-GCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGCGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAG-GCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGCGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAG-GCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGCGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCG-GATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG cctctctggtcagccatattcccccctctcctgggctcttctacctttagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGGATCCCACTACCTCCTCTCATTCCAACAATGCCTCCAGTAGAGCGCTCGTTTACTTCAGGCTTTGCCGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAAGTTCCAGgtaggtctggtttcaggcaatgggctgatactgccaattgtagccctttc #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATC-CCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaataggaCGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCTGCTGCGCTTTACAGTGCCAATCCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATC-CCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaataggaCGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCTGCTGCGCTTTACAGTGCCAATCCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCT-GCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCTGCTGCGCTTTACAGTGCCAATCCCCaGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCT-GCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCTGCTGCGCTTTACAGTGCCAATCCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCT-GCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCTGCTGCGCTTTACAGTGCCAATCCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATC-CCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCTGCTGCGCTTTACAGTGCCAATCCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATC-CCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCTGCTGCGCTTTACAGTGCCAATCCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCT-GCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattcatgctgccacttgtgtctattttaaaaatagGACGATTTGAAGCTTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCTGCTGCGCTTTACAGTGCCAATCCCCAGCCCTCAACAACAGCCCTCAAGTTAAGGAATTTTTCCGAgtaagcgcctgtactgacagggtccccttctagtcaaaccacctggcctc #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAG-TTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg cagtgttttacccagctcttgctaaggtaaaggagatttttcttctccagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATACTCACCGGAATCTCTTTCAGGATCTAGAGGAGCTTCCCAGCCTTCCCACAAGCCCAGGTGTTTggtgagctttagactctgtacctctccagctcaaggcatcaagaatctccg Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAG-TTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg cagtgttttacccagctcttgctaaggtaaaggagatttttcttctccagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATACTCACCGGAATCTCTTTCAGGATCTAGAGGAGCTTCCCAGCCTTCCCACAAGCCCAGGTGTTTggtgagctttagactctgtacctctccagctcaaggcatcaagaatctccg Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAG-TTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgttttacccagctcttgctaaggtaaaggagatttttcttctccagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATACTCACCGGAATCTCTTTCAGGATCTAGAGGAGcTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagctttagactctgtacctctccagctcaaggcatcaagaatctccg Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCG-GCCTTCCCCCGTGCCCAGGTGTTTG cagtgttttacccagctcttgctaaggtaaaggagatttttcttctccagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATACTCACCGGAATCTCTTTCAGGATCTAGAGGAGCTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagctttagactctgtacctctccagctcaaggcatcaagaatctccg Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAG-TTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgttttacccagctcttgctaaggtaaaggagatttttcttctccagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATACTCACCGGAATCTCTTTCAGGATCTAGAGGAGCTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagctttagactctgtacctctccagctcaaggcatcaagaatctccg Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAG-TTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgttttacccagctcttgctaaggtaaaggagatttttcttctccagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATACTCACCGGAATCTCTTTCAGGATCTAGAGGAGCTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagctttagactctgtacctctccagctcaaggcatcaagaatctccg Alignment from Exonerate_coding2genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAG-TTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgttttacccaGCTCTTGCTAAGGTAAAGGAGATTTTTCTTCTCCAGGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATACTCACCGGAATCTCTTTCAGGATCTAGAGGAGCTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagctttagactctgtacctctccagctcaaggcatcaagaatctccg Alignment from GeneWise --------------TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAG-GAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG CAGTGTTTTACCCAGCTCTTGCTAAGGTAAAGGAGATTTTTCTTCTCCAGGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTATACTCACCGGAATCTCTTTCAGGATCTAGAGGAGCTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtgagctttagactctgtacctctccagctcaaggcatcaagaatctccg #### Snx32_ID1066_12 --> 2 - 0 Original Alignment agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAAT-CTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgagtcctgaaggattgcaacaatcaattgtccatttctgtttgccatagaaCTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from CESAR agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAAT-CTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagaaCTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Spaln_aa2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAAT-CTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgagtcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACcCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Spaln_nt2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATC-TCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgagtcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Pairagon AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAA-TCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgagtcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Exonerate_protein2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAAT-CTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgagtcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Exonerate_coding2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAAT-CTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgagtcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from GeneWise AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAAT-CTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAGGCCAGCACCCTGCTTCTCCAGAACACCCTTGTTGCCCTTAAGGGAGAGCC tgagtcctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGGTAAGTTGTTACTTCAGCTACATCACAAAGAACTTACTACCCAGTCTGGA #### Snx32_ID1068_10 --> 0 - 0 Original Alignment AAACTGGAAGGCCGGGTAGCCTCTGATGAGGAC-CTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from CESAR AAACTGGAAGGCCGGGTAGCCTCTGATGAGGAC-CTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Spaln_aa2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGAC-CTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATcCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Spaln_nt2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGA-CCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Pairagon AAACTGGAAGGCCGGGTAGCCTCTGATGAGGA-CCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Exonerate_protein2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGAC-CTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Exonerate_coding2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGAC-CTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from GeneWise AAACTGGAAGGCCGGGTAGCCTCTGATGAGGAC-CTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa #### Snx32_ID1069_9 --> 1 - 0 Original Alignment gAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatctgggtgagccctggtgagttctcctctgcttacaggAGCTTTTTAAAACTGCGCAGAACTGTTTGATCGGCTGCGGgtgagaactaccctcaacattagatctgctcagggatgaccaaggtgcca Alignment from CESAR gAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatctgggtgagccctggtgagttctcctctgcttacaggAGCTTTTTAAAACTGCGCAGAACTGTTTGATCGGCTGCGGgtgagaactaccctcaacattagatctgctcagggatgaccaaggtgcca Alignment from Spaln_aa2Genome GAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatctgggtgagccctggtgagttctcctctgcttacagGAGCTTTTTAAAACTGcGCAGAACTGTTTGATCGGCTGCGGgtgagaactaccctcaacattagatctgctcagggatgaccaaggtgcca Alignment from Spaln_nt2Genome GAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatctgggtgagccctggtgagttctcctctgcttacagGAGCTTTTTAAAACTGCGCAGAACTGTTTGATCGGCTGCGGgtgagaactaccctcaacattagatctgctcagggatgaccaaggtgcca Alignment from Pairagon GAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatctgggtgagccctggtgagttctcctctgcttacagGAGCTTTTTAAAACTGCGCAGAACTGTTTGATCGGCTGCGGgtgagaactaccctcaacattagatctgctcagggatgaccaaggtgcca Alignment from Exonerate_protein2genome GAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatctgggtgagccctggtgagttctcctctgcttacagGAGCTTTTTAAAACTGCGCAGAACTGTTTGATCGGCTGCGGgtgagaactaccctcaacattagatctgctcagggatgaccaaggtgcca Alignment from Exonerate_coding2genome ctcagggcatgcatctgggtgagccctggtgagttctcctctgcttacaggagctttttaaaactgcgcagaactgtttgatcggctgcgggtgagaactaccctcaacattagatctgctcagggatgaccaaggtgcca Alignment from GeneWise GAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatctgggtgagccctggtgagttctcctctgcttacagGAGCTTTTTAAAACTGCGCAGAACTGTTTGATCGGCTGCGGgtgagaactaccctcaacattagatctgctcagggatgaccaaggtgcca #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcgcacatacctccaattacaattgcccagagcagacacgcacctttcaggcCTGGCAGACAACTATATTCCCCATTTCAGCT---GTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAaggtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from CESAR gcCTGGCAGACAACTATATCCCT-ATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcgcacatacctccaattacaattgcccagagcagacacgcacctttcaggcCTGGCAGACAACTATATTCCCCATTTCAGCTGTG---AGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAaggtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCC--ATTTCAGCTGTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATAT-CCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCCATTTCAGCTG---TGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Pairagon GCCTGGCAGACAACTATA-TCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCCATTTCAGCTG---TGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCCATTTCA---GCTGTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCCATTTCA---GCTGTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt Alignment from GeneWise GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacatacctccaattacaattgcccagagcagacacgcacctttcagGCCTGGCAGACAACTATATTCCCC--ATTTCAGCTGTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagggtcatgcgatgctgctttgctcacccatgtaccattactggggt #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt acctccaagtgtactgcccccctcaggcgttctttcctttttgtgaacagGAGGTAGATGATTTTTTTGAACATGAAAGGCCTTTCCTAGTTCAATATAAAACCCGAATTCGCCGACACCTGCCAAAGAGCAGACCGCGTTATACACTCCCACAAAcgtaaagcacctttagggctagagcactgaatgcgcacatacctccaatta Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt acctccaagtgtactgcccccctcaggcgttctttcctttttgtgaacagGAGGTAGATGATTTTTTTGAACATGAAAGGCCTTTCCTAGTTCAATATAAAACCCGAATTCGCCGACACCTGCCAAAGAGCAGACCGCGTTATACACTCCCACAAAcgtaaagcacctttagggctagagcactgaatgcgcacatacctccaatta Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT acctccaagtgtactgcccccctcaggcgttctttcctttttgtgaacagGAGGTAGATGATTTTTTTGAACATGAAAGGCCTTTCCTAGTTCAATATAAAACCCGAATTCGCcGACACCTGCCAAAGAGCAGACCGCGTTATACACTCCCACAAACgtaaagcacctttagggctagagcactgaatgcgcacatacctccaatta Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT acctccaagtgtactgcccccctcaggcgttctttcctttttgtgaacagGAGGTAGATGATTTTTTTGAACATGAAAGGCCTTTCCTAGTTCAATATAAAACCCGAATTCGCCGACACCTGCCAAAGAGCAGACCGCGTTATACACTCCCACAAACgtaaagcacctttagggctagagcactgaatgcgcacatacctccaatta Alignment from Pairagon ------------------------------------------------AGGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCG-AGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ACCTCCAAGTGTACTGCCCCCCTCAGGCGTTCTTTCCTTTTTGTGAACAGGAGGTAGATGATTTTTTTGAACATGAAAGGCCTTTCCTAGTTCAATATAAAACCCGAATTCGCCGACACCTGCCAAAGAGCAGACCGCGTTATACACTCCCACAAACgtaaagcacctttagggctagagcactgaatgcgcacatacctccaatta Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT acctccaagtgtactgcccccctcaggcgttctttcctttttgtgaacagGAGGTAGATGATTTTTTTGAACATGAAAGGCCTTTCCTAGTTCAATATAAAACCCGAATTCGCCGACACCTGCCAAAGAGCAGACCGCGTTATACACTCCCACAAACgtaaagcacctttagggctagagcactgaatgcgcacatacctccaatta Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT acctccaagtgtactgcccccctcaggcgttctttcctttttgtgaacagGAGGTAGATGATTTTTTTGAACATGAAAGGCCTTTCCTAGTTCAATATAAAACCCGAATTCGCCGACACCTGCCAAAGAGCAGACCGCGTTATACACTCCCACAAACgtaaagcacctttagggctagagcactgaatgcgcacatacctccaatta Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATC-CGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT acctccaagtgtactgcccccctcaggcgttctttcctttttgtgaacagGAGGTAGATGATTTTTTTGAACATGAAAGGCCTTTCCTAGTTCAATATAAAACCCGAATTCGCCGACACCTGCCAAAGAGCAGACCGCGTTATACACTCCCACAAACgtaaagcacctttagggctagagcactgaatgcgcacatacctccaatta #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC----GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTCGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC----GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTCGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGT---CGGCATATCAGGgctcaaagtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC----GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAGGTATCTGGGGGGCTCCTAAGAGG---TGTTAGGTATGCAGATGAAATCCTCATCACTGGTCGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC----CGGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAGGTATCTGGGGGGCTCCTAAGAGG---TGTTAGGTATGCAGATGAAATCCTCATCACTGGTCGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC----GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTCGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC----GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGGTCGGCATATCAGGGCTCAAAgtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC- acaacattattaagattatccaagtctctctgatttcaccctctctacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAGGTATCTGGGGGGCTCCTAAGAGGT---GTTAGGTATGCAGATGAAATCCTCATCACTGgtcggcatatcagggctcaaagtaagcatggcctctgttgtggtaggaggaacatgccaggtagccctgcc #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTT-CGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTT-CGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAG------TACGCCGGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTT-CGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTcTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTC-GCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGC------CGGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTC-GCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGA agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAgtatgaatacaacagccttgttgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGC-CAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGC-CAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTT-CGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agggtagcttgaggtaacaagaaattgcgagagacccctgatgcccacagGGTGGACTCCCCCACTCTGCCCAGTCTGAATTCTCAGTGGTTCTGCCAGCATAAAGAGTTCATCTGGCTGCATGACACTTATGTAGAGAATGAAGAGTATGAATACAACAGCCTTGTTgtatgcagcagtggagcagggttggagtgaaaaaaaagcaaggaagtgtg #### Sptbn2_ID611_6 --> 1 - 1 Original Alignment gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGT-AATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacaggCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTCAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGggtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from CESAR gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGT-AATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacaggCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTCAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGggtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Spaln_aa2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGT-AATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTcAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Spaln_nt2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGT-AATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTCAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Pairagon GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGT-AATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTCAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Exonerate_protein2genome tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacaggccagatctgttggattttgagtccctgaaaaagtgtcaatgtccactacaatttgcagaatgctttcaatcttgctgaaaaggaacttggccttagaagaatcctggattctgagggtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Exonerate_coding2genome tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacaggccagatctgttggattttgagtccctgaaaaagtgtcaatgtccactacaatttgcagaatgctttcaatcttgctgaaaaggaacttggccttagaagaatcctggattctgagggtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from GeneWise GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGT-AATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTCAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtaagatggattaataagccagttgataacaagacagagactactatcaa #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagcGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagcGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACcCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAA-CAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAA-CCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAA-CAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCAGAGACTTCGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCAGAGACTTCGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCAGAGACTTcGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCAGAGACTTCGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCAGAGACTTCGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCAGAGACTTCGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCAGAGACTTCGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGA-CTTGAACAGAGCAATGTCCCCGAAGGACCT tcttgaaactcagccagcatttgaatctaactttttttttctcatttcagCCCCTGTTGGAACAGCAGAGACTTCGAACATGGCAATGTGCCTGAGGGACCTgtacttttagctgggcttaagtgtgatattgaaaggtgattatgcaaaaa #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACAT-GTTTTCAAGCTGgg cgctgcccctagcctctgaaattgagagcctctgctttcctcactttcaggTCATGGCAGAATGTGTATTGTGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCAGCTAGTGCTGGGGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATCGTTTTCAAACTAgggtgtggttacaagctcaactaagtggccacctatactagggttatagtgt Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACAT-GTTTTCAAGCTGgg cgctgcccctagcctctgaaattgagagcctctgctttcctcactttcaggTCATGGCAGAATGTGTATTGTGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCAGCTAGTGCTGGGGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATCGTTTTCAAACTAgggtgtggttacaagctcaactaagtggccacctatactagggttatagtgt Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGC-- cgctgcccctagcctctgaaattgagagcctctgctttcctcactttcagGTCATGGCAGAATGTGTATTGTGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCAGCTAGTGCTGGGGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATCGTTTTCAAACTAGGGTgtggttacaagctcaactaagtggccacctatactagggttatagtgt Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACAT-GTTTTCAAGCTGGG cgctgcccctagcctctgaaattgagagcctctgctttcctcactttcagGTCATGGCAGAATGTGTATTGTGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCAGCTAGTGCTGGGGTGCCATA------TGAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATCGTTTTCAAACTAGGgtgtggttacaagctcaactaagtggccacctatactagggttatagtgt Alignment from Pairagon GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACAT-GTTTTCAAGCTGGG cgctgcccctagcctctgaaattgagagcctctgctttcctcactttcagGTCATGGCAGAATGTGTATTGTGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCAGCTAGTGCTGGGGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATCGTTTTCAAACTAGGgtgtggttacaagctcaactaagtggccacctatactagggttatagtgt Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACAT-GTTTTCAAGCTGGG cgctgcccctagcctctgaaattgagagcctctgctttcctcactttcagGTCATGGCAGAATGTGTATTGTGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCAGCTAGTGCTGGGGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATCGTTTTCAAACTAGGgtgtggttacaagctcaactaagtggccacctatactagggttatagtgt Alignment from Exonerate_coding2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACAT-GTTTTCAAGCTGGG cgctgcccctagcctctgaaattgagagcctctgctttcctcactttcagGTCATGGCAGAATGTGTATTGTGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCAGCTAGTGCTGGGGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATCGTTTTCAAACTAGGgtgtggttacaagctcaactaagtggccacctatactagggttatagtgt Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGC-- cgctgcccctagcctctgaaattgagagcctctgctttcctcactttcagGTCATGGCAGAATGTGTATTGTGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCAGCTAGTGCTGGGGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATCGTTTTCAAACTAGGGTgtggttacaagctcaactaagtggccacctatactagggttatagtgt #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG tacacacaaagacagatttgttgctctcatgacactttggttccttgcagaTTACAGGATGGTAAACGAATACCTATTCCAAGCCCAAGATGAGgtgagtcccccgctactacctgtggctttccctactaacagccagttttt Alignment from CESAR cTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG tacacacaaagacagatttgttgctctcatgacactttggttccttgcagaTTACAGGATGGTAAACGAATACCTATTCCAAGCCCAAGATGAGgtgagtcccccgctactacctgtggctttccctactaacagccagttttt Alignment from Spaln_aa2Genome CTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG tacacacaaagacagatttgttgctctcatgacactttggttccttgcagATTACAGGATGGTAAAcGAATACCTATTCCAAGCCCAAGATGAGgtgagtcccccgctactacctgtggctttccctactaacagccagttttt Alignment from Spaln_nt2Genome CTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG tacacacaaagacagatttgttgctctcatgacactttggttccttgcagATTACAGGATGGTAAACGAATACCTATTCCAAGCCCAAGATGAGgtgagtcccccgctactacctgtggctttccctactaacagccagttttt Alignment from Pairagon CTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG tacacacaaagacagatttgttgctctcatgacactttggttccttgcagATTACAGGATGGTAAACGAATACCTATTCCAAGCCCAAGATGAGgtgagtcccccgctactacctgtggctttccctactaacagccagttttt Alignment from Exonerate_protein2genome CTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG tacacacaaagacagatttgttgctctcatgacactttggttccttgcagATTACAGGATGGTAAACGAATACCTATTCCAAGCCCAAGATGAGgtgagtcccccgctactacctgtggctttccctactaacagccagttttt Alignment from Exonerate_coding2genome tacacacaaagacagatttgttgctctcatgacactttggttccttgcagattacaggatggtaaacgaatacctattccaagcccaagatgaggtgagtcccccgctactacctgtggctttccctactaacagccagttttt Alignment from GeneWise tacacacaaagacagatttgttgctctcatgacactttggttccttgcagattacaggatggtaaacgaatacctattccaagcccaagatgaggtgagtcccccgctactacctgtggctttccctactaacagccagttttt #### Ssh3_ID443_13 --> 1 - 0 Original Alignment cCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACA-CCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagtcaattgtcgtagcactaagggttatcctcccatgtctcctgtacagcCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTA---CCAGAGGAACCTCTAGCACCTGAAGTTTCCACACCCGTTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGTCTGGAAGGAAGCCAAGAAATGCCAAAAGAAGATCTAGGACTGCAGCCCAGAATCAACCTTCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGCAGAGAGTACCCCAGAGGCAGGGGGTCTGCCAGAGgtaggttcagaccggaggtgtctgtcaatccagtaaccaccttgtcaccc Alignment from CESAR cCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCA-TTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagtcaattgtcgtagcactaagggttatcctcccatgtctcctgtacagcCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTA---CCAGAGGAACCTCTAGCACCTGAAGTTTCCACACCCGTTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGTCTGGAAGGAAGCCAAGAAATGCCAAAAGAAGATCTAGGACTGCAGCCCAGAATCAACCTTCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGCAGAGAGTACCCCAGAGGCAGGGGGTCTGCCAGAGgtaggttcagaccggaggtgtctgtcaatccagtaaccaccttgtcaccc Alignment from Spaln_aa2Genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACA-CCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagtcaattgtcgtagcactaagggttatcctcccatgtctcctgtacagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTA---CCAGAGGAACCTCTAGCACCTGAAGTTTCCACAcCCGTTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGTCTGGAAGGAAGCCAAGAAATGCCAAAAGAAGATCTAGGACTGCAGCCCAGAATCAACCTTCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGCAGAGAGTACCCCAGAGGCAGGGGGTCTGCCAGAGgtaggttcagaccggaggtgtctgtcaatccagtaaccaccttgtcaccc Alignment from Spaln_nt2Genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCA-TTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagtcaattgtcgtagcactaagggttatcctcccatgtctcctgtacagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGT---ACCAGAGGAACCTCTAGCACCTGAAGTTTCCACACCCGTTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGTCTGGAAGGAAGCCAAGAAATGCCAAAAGAAGATCTAGGACTGCAGCCCAGAATCAACCTTCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGCAGAGAGTACCCCAGAGGCAGGGGGTCTGCCAGAGgtaggttcagaccggaggtgtctgtcaatccagtaaccaccttgtcaccc Alignment from Pairagon CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACA-CCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagtcaattgtcgtagcactaagggttatcctcccatgtctcctgtacagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGT---ACCAGAGGAACCTCTAGCACCTGAAGTTTCCACACCCGTTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGTCTGGAAGGAAGCCAAGAAATGCCAAAAGAAGATCTAGGACTGCAGCCCAGAATCAACCTTCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGCAGAGAGTACCCCAGAGGCAGGGGGTCTGCCAGAGgtaggttcagaccggaggtgtctgtcaatccagtaaccaccttgtcaccc Alignment from Exonerate_protein2genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACA-CCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagtcaattgtcgtagcactaagggttatcctcccatgtctcctgtacagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTA---CCAGAGGAACCTCTAGCACCTGAAGTTTCCACACCCGTTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGTCTGGAAGGAAGCCAAGAAATGCCAAAAGAAGATCTAGGACTGCAGCCCAGAATCAACCTTCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGCAGAGAGTACCCCAGAGGCAGGGGGTCTGCCAGAGgtaggttcagaccggaggtgtctgtcaatccagtaaccaccttgtcaccc Alignment from Exonerate_coding2genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACA-CCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagtcaattgtcgtagcactaagggttatcctcccatgtctcctgtacagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTA---CCAGAGGAACCTCTAGCACCTGAAGTTTCCACACCCGTTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGTCTGGAAGGAAGCCAAGAAATGCCAAAAGAAGATCTAGGACTGCAGCCCAGAATCAACCTTCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGCAGAGAGTACCCCAGAGGCAGGGGGTCTGCCAGAGgtaggttcagaccggaggtgtctgtcaatccagtaaccaccttgtcaccc Alignment from GeneWise CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCA-TTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagtcaattgtcgtagcactaagggttatcctcccatgtctcctgtacagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTA---CCAGAGGAACCTCTAGCACCTGAAGTTTCCACACCCGTTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGTCTGGAAGGAAGCCAAGAAATGCCAAAAGAAGATCTAGGACTGCAGCCCAGAATCAACCTTCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGCAGAGAGTACCCCAGAGGCAGGGGGTCTGCCAGAGgtaggttcagaccggaggtgtctgtcaatccagtaaccaccttgtcaccc #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagcAGCTTAAGTGTGACGTCTGGTCGGCGAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACTATGtggtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from CESAR gGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagcAGCTTAAGTGTGACGTCTGGTCGGCGAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACTATGtggtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTGGTcGGCGAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTGGTCGGCGAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Pairagon GGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTGGTCGGCGAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTGGTCGGCGAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTGGTCGGCGAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca Alignment from GeneWise GGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcaaagtctaccagtacccatccttttgcagCAGCTTAAGTGTGACGTCTGGTCGGCGAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACTATGTGgtgagtggtgcaagcaataaggttcccgagcatacttggttgaccatcca #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAA-AAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagcACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from CESAR cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAA-AAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagcACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAA-AAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAcAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Spaln_nt2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGT-AAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Pairagon CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAA-AAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAA-AAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from Exonerate_coding2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAA-AAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac Alignment from GeneWise CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAA-AAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtcctttctgatgtgcacattgttatcccctacctcagCACTGGTATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgaggagacaccatgggaatgggattgggaacatgttcgatcatataac #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCT------------GAGGATGTGAAGCGGCGGGCCATGGCTGAC-CCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga aaacacatatatagtattgatgtgctccgcgccttctctcaacgccacagCAAGCAGCAGATGGATACCAACGGTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------------------CCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATACTGGAGCAAATGCAAAAAGACCCCCAGGCTTTGAGTgagtatgttacacagagatggaagaatgggagagaaatttttatttgcatgc Alignment from CESAR GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGAT------------AGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga aaacacatatatagtattgatgtgctccgcgccttctctcaacgccacagCAAGCAGCAGATGGATACCAACGGTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTG---------------ACA--CCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATACTGGAGCAAATGCAAAAAGACCCCCAGGCTTTGAGTgagtatgttacacagagatggaagaatgggagagaaatttttatttgcatgc Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatatagtattgatgtgctccgcgccttctctcaacgccacagCAAGCAGCAGATGGATACCAACGGTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACAC-----CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATACTGGAGCAAATGCAAAAAGACCCCCAGGCTTTGAGTGAgtatgttacacagagatggaagaatgggagagaaatttttatttgcatgc Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatatagtattgatgtgctccgcgccttctctcaacgccacagCAAGCAGCAGATGGATACCAACGGTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGA----CAGC-CCTGAGGAAGTGACACCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATACTGGAGCAAATGCAAAAAGACCCCCAGGCTTTGAGTGAgtatgttacacagagatggaagaatgggagagaaatttttatttgcatgc Alignment from Pairagon GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAG------------ACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatatagtattgatgtgctccgcgccttctctcaacgccacagCAAGCAGCAGATGGATACCAACGGTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGAC-----------------ACCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATACTGGAGCAAATGCAAAAAGACCCCCAGGCTTTGAGTGAgtatgttacacagagatggaagaatgggagagaaatttttatttgcatgc Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGAT aaacacatatatagtattgatgtgctccgcgccttctctcaacgccacagCAAGCAGCAGATGGATACCAACGGTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACagccctgaggaagtgacaccctgaggttcagcaaataatgagtgacccagccatgagactcatactggagcaaatgcaaaaagacccccaggctttgagtgagtatgttacacagagatggaagaatgggagagaaatttttatttgcatgc Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGA aaacacatatatagtattgatgtgctccgcgccttctctcaacgccacagCAAGCAGCAGATGGATACCAACGGTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA-----CCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATACTGGAGCAAATGCAAAAAGACCCCCAGGCTTTGAgtgagtatgttacacagagatggaagaatgggagagaaatttttatttgcatgc Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatatagtattgatgtgctccgcgccttctctcaacgccacagCAAGCAGCAGATGGATACCAACGGTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAA---GTGACAC--CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATACTGGAGCAAATGCAAAAAGACCCCCAGGCTTTGAGTGAgtatgttacacagagatggaagaatgggagagaaatttttatttgcatgc #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa gttgatttgtctggcttttttatctaactgctccttgacagtgtgcgcagctGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGCGATCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAAATTGCTaagtttgccatcaaattcagaggcttaggcaaggcacctttcttgctgccta Alignment from CESAR ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa gttgatttgtctggcttttttatctaactgctccttgacagtgtgcgcagctGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGCGATCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAAATTGCTaagtttgccatcaaattcagaggcttaggcaaggcacctttcttgctgccta Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttgatttgtctggcttttttatctaactgctccttgacagtgtgcgcagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGcGATCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAAATTGCTAAgtttgccatcaaattcagaggcttaggcaaggcacctttcttgctgccta Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttgatttgtctggcttttttatctaactgctccttgacagtgtgcgcagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGCGATCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAAATTGCTAAgtttgccatcaaattcagaggcttaggcaaggcacctttcttgctgccta Alignment from Pairagon CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttgatttgtctggcttttttatctaactgctccttgacagtgtgcgcagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGCGATCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAAATTGCTAAgtttgccatcaaattcagaggcttaggcaaggcacctttcttgctgccta Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttgatttgtctggcttttttatctaactgctccttgacagtgtgcgcagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGCGATCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAAATTGCTAAgtttgccatcaaattcagaggcttaggcaaggcacctttcttgctgccta Alignment from Exonerate_coding2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttgatttgtctggcttttttatctaactgctccttgacagtgtgcgcagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGCGATCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAAATTGCTAAgtttgccatcaaattcagaggcttaggcaaggcacctttcttgctgccta Alignment from GeneWise CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttgatttgtctggcttttttatctaactgctccttgacagtgtgcgcagCTGTGCACTTTGACAAGGGTGATTATAATGAATGTCGGCGATCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAAATTGCTAAgtttgccatcaaattcagaggcttaggcaaggcacctttcttgctgccta #### Suv420h1_ID146_8 --> 0 - 2 Original Alignment TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGA-GAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAag tatttggcttgcttaatgtcaggtgttaggactttgttttttggttttagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGACGAAGAGATCTCTTGTTATTATGGAGATGGGTTTTTTGGAGAAAATAATGAGTTCTGTGAGTGTTATACTTGTGAAaggtatttacccaagccctctacctatcttccatggaggagtattgttgtga Alignment from CESAR TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGA-GAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAag tatttggcttgcttaatgtcaggtgttaggactttgttttttggttttagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGACGAAGAGATCTCTTGTTATTATGGAGATGGGTTTTTTGGAGAAAATAATGAGTTCTGTGAGTGTTATACTTGTGAAaggtatttacccaagccctctacctatcttccatggaggagtattgttgtga Alignment from Spaln_aa2Genome TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGA-GAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggcttgcttaatgtcaggtgttaggactttgttttttggttttagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAcGAAGAGATCTCTTGTTATTATGGAGATGGGTTTTTTGGAGAAAATAATGAGTTCTGTGAGTGTTATACTTGTGAAAGgtatttacccaagccctctacctatcttccatggaggagtattgttgtga Alignment from Spaln_nt2Genome TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGA-GAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggcttgcttaatgtcaggtgttaggactttgttttttggttttagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGACGAAGAGATCTCTTGTTATTATGGAGATGGGTTTTTTGGAGAAAATAATGAGTTCTGTGAGTGTTATACTTGTGAAAGgtatttacccaagccctctacctatcttccatggaggagtattgttgtga Alignment from Pairagon TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGA-GAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggcttgcttaatgtcaggtgttaggactttgttttttggttttagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGACGAAGAGATCTCTTGTTATTATGGAGATGGGTTTTTTGGAGAAAATAATGAGTTCTGTGAGTGTTATACTTGTGAAAGgtatttacccaagccctctacctatcttccatggaggagtattgttgtga Alignment from Exonerate_protein2genome TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGA-GAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggcttgcttaatgtcaggtgttaggactttgttttttggttttagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGACGAAGAGATCTCTTGTTATTATGGAGATGGGTTTTTTGGAGAAAATAATGAGTTCTGTGAGTGTTATACTTGTGAAAGgtatttacccaagccctctacctatcttccatggaggagtattgttgtga Alignment from Exonerate_coding2genome ATTGCAGACCTAACTGTAAGTTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGA-GAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggcttgcttaatgtcaggtgttaggACTTTGTTTTTTGGTTTTAGTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGACGAAGAGATCTCTTGTTATTATGGAGATGGGTTTTTTGGAGAAAATAATGAGTTCTGTGAGTGTTATACTTGTGAAAGgtatttacccaagccctctacctatcttccatggaggagtattgttgtga Alignment from GeneWise TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGA-GAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggcttgcttaatgtcaggtgttaggactttgttttttggttttagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGACGAAGAGATCTCTTGTTATTATGGAGATGGGTTTTTTGGAGAAAATAATGAGTTCTGTGAGTGTTATACTTGTGAAAGgtatttacccaagccctctacctatcttccatggaggagtattgttgtga #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTAT-CACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCCACAGCGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTAT-CACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCCACAGCGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTAT-CACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATcCACAGCGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTAT-CACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCCACAGCGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTAT-CACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCCACAGCGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTAT-CACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCCACAGCGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from Exonerate_coding2genome TTCCACTGCCGCATCGTCTCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTAT-CACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatGTCATTGTTATTCATTTAGCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCCACAGCGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCT-TATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tatcagacataggtcaatagaagccttgcatgtcattgttattcatttagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCCACAGCGTCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaggaccaagctatgaggtaacaacccaactgctctttcagtccctcac #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCA-GCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagctGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCACGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCA-GCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagctGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCACGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCA-GCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAcGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCA-GCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCACGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCA-GCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCACGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCA-GCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCACGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCA-GCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCACGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCA-GCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCACGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAAC-ATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg caaatactaagccggtagctaggcctgaagattcactctgccatttgcagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACCATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGgggtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAAC-ATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg caaatactaagccggtagctaggcctgaagattcactctgccatttgcagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACCATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGgggtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAAC-ATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACcATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAA-CATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACCATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAA-CATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACCATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAAC-ATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACCATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAAC-ATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACCATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTG-CGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG caaatactaagccggtagctaggcctgaagattcactctgccatttgcagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACCATACACACACTACTGGATGCTGCGATGCTTCAAATCAACCAATACCTCACTGTGCTGGCCTCCCTGGGgtatgtacgcatgttcaattgcacatttccctgtagacagacctcctatt #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCA-ATTCCTGAAGCAGAAAAGCCTCCTg gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagaCCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGCATTCTTGAAGCAGAAAAGCCTCCTggtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCA-ATTCCTGAAGCAGAAAAGCCTCCTg gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagaCCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGCATTCTTGAAGCAGAAAAGCCTCCTggtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCA-ATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGcATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCA-ATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGCATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCA-ATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGCATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCA-ATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGCATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from Exonerate_coding2genome gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagacccccaaggccagcaacctctgttaaccacactgaggaaactgcatctactgttgtatttgctgcaccttccagtagtgctccaagctccgaggctccaactccttccccaggggcatcccccccgcattcttgaagcagaaaagcctcctggtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATT-CCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccaaatgttggagtgctacacattgtttcctcagACCCCCAAGGCCAGCAACCTCTGTTAACCACACTGAGGAAACTGCATCTACTGTTGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGCATTCTTGAAGCAGAAAAGCCTCCTGgtatgataggaaaagaataggccagcagaatctaggtggtatggcttgaa #### Taf5_ID10097_5 --> 1 - 0 Original Alignment aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaagattccacacaatggactgtccacccgaacatatttttcctagaATTCCTCTCCCGGAACTAAAGGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtgagtaagaaaccaggcagtgctatgtcacacaagtggtcacagctgca Alignment from CESAR aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaagattccacacaatggactgtccacccgaacatatttttcctagaATTCCTCTCCCGGAACTAAAGGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtgagtaagaaaccaggcagtgctatgtcacacaagtggtcacagctgca Alignment from Spaln_aa2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaagattccacacaatggactgtccacccgaacatatttttcctagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTcACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtgagtaagaaaccaggcagtgctatgtcacacaagtggtcacagctgca Alignment from Spaln_nt2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaagattccacacaatggactgtccacccgaacatatttttcctagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtgagtaagaaaccaggcagtgctatgtcacacaagtggtcacagctgca Alignment from Pairagon AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaagattccacacaatggactgtccacccgaacatatttttcctagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtgagtaagaaaccaggcagtgctatgtcacacaagtggtcacagctgca Alignment from Exonerate_protein2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaagattccacacaatggactgtccacccgaacatatttttcctagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtgagtaagaaaccaggcagtgctatgtcacacaagtggtcacagctgca Alignment from Exonerate_coding2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaagattccacacaatggactgtccacccgaacatatttttcctagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtgagtaagaaaccaggcagtgctatgtcacacaagtggtcacagctgca Alignment from GeneWise AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACT-ACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaagattccacacaatggactgtccacccgaacatatttttcctagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAACTAGACAAAATAATGAATATGAAAGAAACTCACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtgagtaagaaaccaggcagtgctatgtcacacaagtggtcacagctgca #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTT-GGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTCGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgaggcctgtagtgacctcataacagtgcccacgagtcacttacttgtt Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTT-GGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTCGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgaggcctgtagtgacctcataacagtgcccacgctaatattcttcttt Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTT-GGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTcGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgagtcacttacttgtt Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTT-GGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTCGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgagtcacttacttgtt Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTT-GGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTCGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgagtcacttacttgtt Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTT-GGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTCGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgagtcacttacttgtt Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTT-GGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTCGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgagtcacttacttgtt Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTCGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacgagtcacttacttgtt #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGC-CGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatcttttgttgttcacttatagGAACTG Alignment from CESAR GTAAAGATCCAGTGC-CGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctacattctgtccattgctccagGAACTG Alignment from Spaln_aa2Genome GTAAAGATCCAGTGC-CGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTcCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatcttttgttgttcacttatagGAACTG Alignment from Spaln_nt2Genome GTAAAGATCCAGTG-CCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatcttttgttgttcacttatagGAACTG Alignment from Pairagon GTAAAGATCCAGTG-CCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatcttttgttgttcacttatagGAACTG Alignment from Exonerate_protein2genome GTAAAGATCCAGTGC-CGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatcttttgttgttcacttatagGAACTG Alignment from Exonerate_coding2genome GTAAAGATCCAGTGC-CGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatcttttgttgttcacttatagGAACTG Alignment from GeneWise ----CAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacaggtaaagATACAATGTCCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgcccatcttttgttgttcacttatagGAACTG #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagagCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagagCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTcGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTG-TGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGGTGAGAGtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAG-AAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGCGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGCGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGCGTaGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGCGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAA-GGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGCGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGCGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGCGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAG-AAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcatgccttatgcttgtcccacagGATGAGGACACGGAGAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGAATAGTTGGAGCCCTGATGAGGAGCGTAGCTGGGAGCCCTGGGGAAGAGGAGACTGATgtaggtgaccaatggttgcaaaaaatggcctgccagccagattagttgct #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTT-CCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTT-CCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCT-ATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCCtATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCC-TATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCA---AAGACGAGCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGT-TCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCA---AAGACGAGCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTT-CCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTT-CCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACC-GTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCG-GCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcaggCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCACGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCG-GCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcaggCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCACGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCACGCCCCC-----ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCG-GCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTCTAT------CTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCACGCCCCCATTATC------CACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCG-GCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCACGCCCCCATTATC------CACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCG-GCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCACGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCG-GCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCACGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCACGCCCCC--ATT---ATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAG-ATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGCATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGgtgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAG-ATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGCATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGgtgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAG-ATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGcATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAG-ATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGCATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAG-ATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGCATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAG-ATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGCATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAG-ATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGCATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTC-AAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gccaccagagtgcatgttgcaaagtgttccggtctctctccacttctcagCTCTGCAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGCATGAAGACATCAGTCATCCTAGGAGTCACACACATGGCATTTGGGGTCTTCCTCAGCATCTTCAATCAGGTgtaggttaactgatttatgcatgggtggtatgtgcccagtcttgcctcat #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTC-CTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGctgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTC-CTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGctgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTC-CTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTcCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACT-CCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTAC-TCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTGTCAGTCTATAACGGTGGGTTCATGTACAGGTTCTGATATGAAGCATAGC Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTC-CTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTC-CTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTC-CTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGA-CAGAAGATCCGAAAGATCACAGACtg CAGTGGCAgtgagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACCTGCGACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCCAGAAGATCCGAAAGATCACAGATtggtagggaggtatcctcattgcccagtacaagtagcagtcagtttgctgtc Alignment from CESAR CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGA-CAGAAGATCCGAAAGATCACAGACtg CAGTGGCAgtaagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACCTGCGACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCCAGAAGATCCGAAAGATCACAGATtggtagggaggtatcctcattgcccagtacaagtagcagtcagtttgctgtc Alignment from Spaln_aa2Genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGA-CAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtgagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACCTGCGACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTcCAGAAGATCCGAAAGATCACAGATTGgtagggaggtatcctcattgcccagtacaagtagcagtcagtttgctgtc Alignment from Spaln_nt2Genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGAC-AGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtgagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACCTGCGACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCCAGAAGATCCGAAAGATCACAGATTGgtagggaggtatcctcattgcccagtacaagtagcagtcagtttgctgtc Alignment from Pairagon CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGG-ACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtgagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACCTGCGACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCCAGAAGATCCGAAAGATCACAGATTGgtagggaggtatcctcattgcccagtacaagtagcagtcagtttgctgtc Alignment from Exonerate_protein2genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGA-CAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtgagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACCTGCGACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCCAGAAGATCCGAAAGATCACAGATTGgtagggaggtatcctcattgcccagtacaagtagcagtcagtttgctgtc Alignment from Exonerate_coding2genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGA-CAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtgagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACCTGCGACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCCAGAAGATCCGAAAGATCACAGATTGgtagggaggtatcctcattgcccagtacaagtagcagtcagtttgctgtc Alignment from GeneWise CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGA-CAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtgagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACCTGCGACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCCAGAAGATCCGAAAGATCACAGATTGgtagggaggtatcctcattgcccagtacaagtagcagtcagtttgctgtc #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCC-TACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aggaagggagagttgaaaggagtctgcatctttggaccacccctctacagcTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCAGCAGCCTTAGAGCGCCTGTTGTGGAGAGCGTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtaagtgtaaaggcaggactattggattttgtcttgttacagGGTGAACC Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCC-TACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aggaagggagagttgaaaggagtctgcatctttggaccacccctctacagcTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCAGCAGCCTTAGAGCGCCTGTTGTGGAGAGCGTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtaagtgtaaaggcaggactagtgtctccctctcttccctagGGTGAACC Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aggaagggagagttgaaaggagtctgcatctttggaccacccctctacagCTTTGTGGCAGGTGCAGTGGAGcCCCTACAAGGCAGCAGCCTTAGAGCGCCTGTTGTGGAGAGCGTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtaagtgtaaaggcaggactattggattttgtcttgttacagGGTGAACC Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aggaagggagagttgaaaggagtctgcatctttggaccacccctctacagCTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCAGCAGCCTTAGAGCGCCTGTTGTGGAGAGCGTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtaagtgtaaaggcaggactattggattttgtcttgttacagGGTGAACC Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aggaagggagagttgaaaggagtctgcatctttggaccacccctctacagCTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCAGCAGCCTTAGAGCGCCTGTTGTGGAGAGCGTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtaagtgtaaaggcaggactattggattttgtcttgttacagGGTGAACC Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aggaagggagagttgaaaggagtctgcatctttggaccacccctctacagCTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCAGCAGCCTTAGAGCGCCTGTTGTGGAGAGCGTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtaagtgtaaaggcaggactattggattttgtcttgttacagGGTGAACC Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aggaagggagagttgaaaggagtctgcatctttggaccacccctctacagCTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCAGCAGCCTTAGAGCGCCTGTTGTGGAGAGCGTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtaagtgtaaaggcaggactattggattttgtcttgttacagGGTGAACC Alignment from GeneWise TTTTGTGGCAGGTGCTGTG-GAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG------------------------------------------GGTGAGCC aggaagggagagttgaaaggagtctgcatctttggaccacccctctacagCTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCAGCAGCCTTAGAGCGCCTGTTGTGGAGAGCGTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAGTAAGTGTAAAGGCAGGACTATTGGATTTTGTCTTGTTACAGGGTGAACC #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa catacaacctcactgtgtacatgtcggttggtcatttttgtttttttcagGTGGCAGCTGACCATACTGAACGGTCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTaagtaacttgaggcatccaagctttcttggcattctcacattcacactctgt Alignment from CESAR GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa catacaacctcactgtgtacatgtcggttggtcatttttgtttttttcagGTGGCAGCTGACCATACTGAACGGTCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTaagtaacttgaggcatccaagctttcttggcattctcacattcacactctgt Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA catacaacctcactgtgtacatgtcggttggtcatttttgtttttttcagGTGGCAGCTGACCATACTGAAcGGTCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaacttgaggcatccaagctttcttggcattctcacattcacactctgt Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCT-TCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA catacaacctcactgtgtacatgtcggttggtcatttttgtttttttcagGTGGCAGCTGACCATACTGAACGGTCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaacttgaggcatccaagctttcttggcattctcacattcacactctgt Alignment from Pairagon GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA catacaacctcactgtgtacatgtcggttggtcatttttgtttttttcagGTGGCAGCTGACCATACTGAACGGTCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaacttgaggcatccaagctttcttggcattctcacattcacactctgt Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA catacaacctcactgtgtacatgtcggttggtcatttttgtttttttcagGTGGCAGCTGACCATACTGAACGGTCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaacttgaggcatccaagctttcttggcattctcacattcacactctgt Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA catacaacctcactgtgtacatgtcggttggtcatttttgtttttttcagGTGGCAGCTGACCATACTGAACGGTCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaacttgaggcatccaagctttcttggcattctcacattcacactctgt Alignment from GeneWise GTGGCAGCTGACCATACT-GAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA catacaacctcactgtgtacatgtcggttggtcatttttgtttttttcagGTGGCAGCTGACCATACTGAACGGTCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaacttgaggcatccaagctttcttggcattctcacattcacactctgt #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAA-GAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG aatacaggcagggtgggcagcctcagccatgttcaatgatgttttcttagGTTGACTGCCCCCCAGAAGTT---AGACCAAATTACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTAAGAAGTCTTCAGCTAAAGAAAACAATGGAGATAAAAgtaggtggatttgtctcctcctttcctcccacatgtgatccccttggctc Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG aatacaggcagggtgggcagcctcagccatgttcaatgatgttttcttagGTTGACTGCCCCCCAGAAGTT--AGACCAAATTACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTAAGAAGTCTTCAGCTAAAGAAAACAATGGAGATAAAAgtaggtggatttgtctcctcctttcctcccacatgtgatccccttggctc Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG aatacaggcagggtgggcagcctcagccatgttcaatgatgttttcttagGTTGACTGCCCCCCAGAAGTTAGAC--CAAATTACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTAAGAAGTCTTCAGCTAAAGAAAACAATGGAGATAAAAgtaggtggatttgtctcctcctttcctcccacatgtgatccccttggctc Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG aatacaggcagggtgggcagcctcagccatgttcaatgatgttttcttagGTTGACTGCCCCCCAGAAGTTA--GACCAAATTACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTAAGAAGTCTTCAGCTAAAGAAAACAATGGAGATAAAAgtaggtggatttgtctcctcctttcctcccacatgtgatccccttggctc Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG aatacaggcagggtgggcagcctcagccatgttcaatgatgttttcttagGTTGACTGCCCCCCAGAAGTTA--GACCAAATTACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTAAGAAGTCTTCAGCTAAAGAAAACAATGGAGATAAAAgtaggtggatttgtctcctcctttcctcccacatgtgatccccttggctc Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAA-GAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG aatacaggcagggtgggcagcctcagccatgttcaatgatgttttcttagGTTGACTGCCCCCCAGAAGTT---AGACCAAATTACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTAAGAAGTCTTCAGCTAAAGAAAACAATGGAGATAAAAgtaggtggatttgtctcctcctttcctcccacatgtgatccccttggctc Alignment from Exonerate_coding2genome GTTGACTGTCCCCCGGGAGTTACTAAA-GAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG aatacaggcagggtgggcagcctcagccatgttcaatgatgttttcttagGTTGACTGCCCCCCAGAAGTT---AGACCAAATTACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTAAGAAGTCTTCAGCTAAAGAAAACAATGGAGATAAAAgtaggtggatttgtctcctcctttcctcccacatgtgatccccttggctc Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG aatacaggcagggtgggcagcctcagccatgttcaatgatgttttcttagGTTGACTGCCCCCCAGAAGTTAGAC--CAAATTACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTAAGAAGTCTTCAGCTAAAGAAAACAATGGAGATAAAAgtaggtggatttgtctcctcctttcctcccacatgtgatccccttggctc #### Tectb_ID11563_6 --> 1 - 2 Original Alignment gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGAC-TTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg catttttgtaacaatattgttttcaatgccctcccatgttctcccactaggTTCAAAGTGGTCTTGAATAGCTGCTGGGCGACCCCCTTGGCTGACCTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGgggtcagtattaataacaaatcccaagatatgacatctcttctactctacag Alignment from CESAR gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGAC-TTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg catttttgtaacaatattgttttcaatgccctcccatgttctcccactaggTTCAAAGTGGTCTTGAATAGCTGCTGGGCGACCCCCTTGGCTGACCTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGgggtcagtattaataacaaatcccaagatatgacatctcttctactctacag Alignment from Spaln_aa2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGAC-TTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttgtaacaatattgttttcaatgccctcccatgttctcccactagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCGACCCCCTTGGCTGACcTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtcagtattaataacaaatcccaagatatgacatctcttctactctacag Alignment from Spaln_nt2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGA-CTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttgtaacaatattgttttcaatgccctcccatgttctcccactagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCGACCCCCTTGGCTGACCTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtcagtattaataacaaatcccaagatatgacatctcttctactctacag Alignment from Pairagon GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGA-CTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttgtaacaatattgttttcaatgccctcccatgttctcccactagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCGACCCCCTTGGCTGACCTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtcagtattaataacaaatcccaagatatgacatctcttctactctacag Alignment from Exonerate_protein2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGAC-TTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttgtaacaatattgttttcaatgccctcccatgttctcccactagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCGACCCCCTTGGCTGACCTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtcagtattaataacaaatcccaagatatgacatctcttctactctacag Alignment from Exonerate_coding2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGAC-TTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttgtaacaatattgttttcaatgccctcccatgttctcccactagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCGACCCCCTTGGCTGACCTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtcagtattaataacaaatcccaagatatgacatctcttctactctacag Alignment from GeneWise GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCT-GACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttgtaacaatattgttttcaatgccctcccatgttctcccactagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCGACCCCCTTGGCTGACCTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtcagtattaataacaaatcccaagatatgacatctcttctactctacag #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCA-GCAGCCTATGGAAGATCACCTGTG atttgtagactaaggcaggtgtgactgtcgttctgcatgtgacccttcagctTCCAGCCTAAGGACTCCAGTAGCAGTACCTTGTCCATACCCAACACCATTTGGAATTGTGCCACATGCAGGAATGAATGGAGAGCTAACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCTGCCACAGCAGCACGCGGCTTATGGAAGATCACCTGTGgtaagtcttgcatacatataagtgtgttaaagtgcaaagtgattacattt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCA-GCAGCCTATGGAAGATCACCTGTG atttgtagactaaggcaggtgtgactgtcgttctgcatgtgacccttcagctTCCAGCCTAAGGACTCCAGTAGCAGTACCTTGTCCATACCCAACACCATTTGGAATTGTGCCACATGCAGGAATGAATGGAGAGCTAACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCTGCCACAGCAGCACGCGGCTTATGGAAGATCACCTGTGgtaagtcttgcatacatataagtgtgttaaagtgcaaagtgattacattt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCA-GCAGCCTATGGAAGATCACCTGTG atttgtagactaaggcaggtgtgactgtcgttctgcatgtgacccttcagCTTCCAGCCTAAGGACTCCAGTAGCAGTACCTTGTCCATACCCAACACCATTTGGAATTGTGCCACATGCAGGAATGAATGGAGAGCTAACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCTGCCACAGCAGCAcGCGGCTTATGGAAGATCACCTGTGgtaagtcttgcatacatataagtgtgttaaagtgcaaagtgattacattt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCA-GCAGCCTATGGAAGATCACCTGTG atttgtagactaaggcaggtgtgactgtcgttctgcatgtgacccttcagCTTCCAGCCTAAGGACTCCAGTAGCAGTACCTTGTCCATACCCAACACCATTTGGAATTGTGCCACATGCAGGAATGAATGGAGAGCTAACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCTGCCACAGCAGCACGCGGCTTATGGAAGATCACCTGTGgtaagtcttgcatacatataagtgtgttaaagtgcaaagtgattacattt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCA-GCAGCCTATGGAAGATCACCTGTG atttgtagactaaggcaggtgtgactgtcgttctgcatgtgacccttcagCTTCCAGCCTAAGGACTCCAGTAGCAGTACCTTGTCCATACCCAACACCATTTGGAATTGTGCCACATGCAGGAATGAATGGAGAGCTAACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCTGCCACAGCAGCACGCGGCTTATGGAAGATCACCTGTGgtaagtcttgcatacatataagtgtgttaaagtgcaaagtgattacattt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCA-GCAGCCTATGGAAGATCACCTGTG atttgtagactaaggcaggtgtgactgtcgttctgcatgtgacccttcagCTTCCAGCCTAAGGACTCCAGTAGCAGTACCTTGTCCATACCCAACACCATTTGGAATTGTGCCACATGCAGGAATGAATGGAGAGCTAACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCTGCCACAGCAGCACGCGGCTTATGGAAGATCACCTGTGgtaagtcttgcatacatataagtgtgttaaagtgcaaagtgattacattt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCA-GCAGCCTATGGAAGATCACCTGTG atttgtagactaaggcaggtgtgactgtcgttctgcatgtgacccttcagCTTCCAGCCTAAGGACTCCAGTAGCAGTACCTTGTCCATACCCAACACCATTTGGAATTGTGCCACATGCAGGAATGAATGGAGAGCTAACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCTGCCACAGCAGCACGCGGCTTATGGAAGATCACCTGTGgtaagtcttgcatacatataagtgtgttaaagtgcaaagtgattacattt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCA-GCAGCCTATGGAAGATCACCTGTG atttgtagactaaggcaggtgtgactgtcgttctgcatgtgacccttcagCTTCCAGCCTAAGGACTCCAGTAGCAGTACCTTGTCCATACCCAACACCATTTGGAATTGTGCCACATGCAGGAATGAATGGAGAGCTAACCAGCCCTGGGGCTGCTTATGGTGGGCTCCACAATGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCTGCCACAGCAGCACGCGGCTTATGGAAGATCACCTGTGgtaagtcttgcatacatataagtgtgttaaagtgcaaagtgattacattt #### Tle4_ID3629_10 --> 0 - 0 Original Alignment GACAGTGATGGTGAGAAGAGTGATGACAAC-TTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCCTGGTAGTTGAGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from CESAR GACAGTGATGGTGAGAAGAGTGATGACAAC-TTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCCTGGTAGTTGAGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Spaln_aa2Genome GACAGTGATGGTGAGAAGAGTGATGACAAC-TTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACcCTGGTAGTTGAGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Spaln_nt2Genome GACAGTGATGGTGAGAAGAGTGATGACAACT-TGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCCTGGTAGTTGAGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Pairagon GACAGTGATGGTGAGAAGAGTGATGACAA-CTTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCCTGGTAGTTGAGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Exonerate_protein2genome GACAGTGATGGTGAGAAGAGTGATGACAAC-TTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCCTGGTAGTTGAGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from Exonerate_coding2genome GACAGTGATGGTGAGAAGAGTGATGACAAC-TTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCCTGGTAGTTGAGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga Alignment from GeneWise GACAGTGATGGTGAGAAGAGTGATGACAAC-TTGGTAGTTGATGTGTCCAATGAG acagggatgcttttgcaccctcctgctattcatgtctggttgttctgaagGACAGTGATGGTGAGAAGACTGATGATAACCCTGGTAGTTGAGGTCTCTAATGAGgtaagttgtttacaagttgttacacagttgggtgtctgctgaattgatga #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCC-CTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcaggtTACCAGGCTGTGGTTCTATCAGCACCTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAggtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCC-CTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcaggtTACCAGGCTGTGGTTCTATCAGCACCTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAggtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCC-CTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCAcCTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGC-CCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACCTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGC-CCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACCTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCC-CTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACCTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCC-CTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACCTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from GeneWise ---------GCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACCTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGAC-AAGAGTCGCCTGCGCTACCCTATTAATg tatgctgtgatatgacccatgtcctgtgtctttgtgtttgtgtctttcagGTAGCTGAAGGTGTAGAACTGAAGGATCAAGAGTCGCTTGCAGTACCCTATTAATggtaagtgagtacccctaccctgcataaatcagctgcctctggcgataaaa Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGAC-AAGAGTCGCCTGCGCTACCCTATTAATg tatgctgtgatatgacccatgtcctgtgtctttgtgtttgtgtctttcagGTAGCTGAAGGTGTAGAACTGAAGGATCAAGAGTCGCTTGCAGTACCCTATTAATggtaagtgagtacccctaccctgcataaatcagctgcctctggcgataaaa Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGAC-AAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgacccatgtcctgtgtctttgtgtttgtgtctttcagGTAGCTGAAGGTGTAGAACTGAAGGATcAAGAGTCGCTTGCAGTACCCTATTAATGgtaagtgagtacccctaccctgcataaatcagctgcctctggcgataaaa Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGA-CAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgacccatgtcctgtgtctttgtgtttgtgtctttcagGTAGCTGAAGGTGTAGAACTGAAGGATCAAGAGTCGCTTGCAGTACCCTATTAATGgtaagtgagtacccctaccctgcataaatcagctgcctctggcgataaaa Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGA-CAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgacccatgtcctgtgtctttgtgtttgtgtctttcagGTAGCTGAAGGTGTAGAACTGAAGGATCAAGAGTCGCTTGCAGTACCCTATTAATGgtaagtgagtacccctaccctgcataaatcagctgcctctggcgataaaa Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGAC-AAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgacccatgtcctgtgtctttgtgtttgtgtctttcagGTAGCTGAAGGTGTAGAACTGAAGGATCAAGAGTCGCTTGCAGTACCCTATTAATGgtaagtgagtacccctaccctgcataaatcagctgcctctggcgataaaa Alignment from Exonerate_coding2genome GAGTCGCCTGCGCTACCCTATTAATGGCTTCCAGGCTCTGGTGCTAACAG TATGCTGTGATATGACCCATGTCCTGTGTCTTTGTGTTTGTGTCTTTCAGgtagctgaaggtgtagaactgaaggatcaagagtcgcttgcagtaccctattaatggtaagtgagtacccctaccctgcataaatcagctgcctctggcgataaaa Alignment from GeneWise GTGGCCGAAGGCCTGGAACTGAAGGAC-AAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgacccatgtcctgtgtctttgtgtttgtgtctttcagGTAGCTGAAGGTGTAGAACTGAAGGATCAAGAGTCGCTTGCAGTACCCTATTAATGgtaagtgagtacccctaccctgcataaatcagctgcctctggcgataaaa #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag ctttgtggtaggttctacccagactaattgatgtgtgccttggtttctagaGGCTCTATAGGGCTTCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCCGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATCATCTCTCTGAATCTTACAATAaggtaatgtgtgggacaggtccactcagaggtgcaaactaaatttagttcct Alignment from CESAR aGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag ctttgtggtaggttctacccagactaattgatgtgtgccttggtttctagaGGCTCTATAGGGCTTCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCCGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATCATCTCTCTGAATCTTACAATAaggtaatgtgtgggacaggtccactcagaggtgcaaactaaatttagttcct Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctacccagactaattgatgtgtgccttggtttctagAGGCTCTATAGGGCTTCGGATTcGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCCGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATCATCTCTCTGAATCTTACAATAAGgtaatgtgtgggacaggtccactcagaggtgcaaactaaatttagttcct Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctacccagactaattgatgtgtgccttggtttctagAGGCTCTATAGGGCTTCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCCGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATCATCTCTCTGAATCTTACAATAAGgtaatgtgtgggacaggtccactcagaggtgcaaactaaatttagttcct Alignment from Pairagon AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctacccagactaattgatgtgtgccttggtttctagAGGCTCTATAGGGCTTCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCCGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATCATCTCTCTGAATCTTACAATAAGgtaatgtgtgggacaggtccactcagaggtgcaaactaaatttagttcct Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctacccagactaattgatgtgtgccttggtttctagAGGCTCTATAGGGCTTCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCCGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATCATCTCTCTGAATCTTACAATAAGgtaatgtgtgggacaggtccactcagaggtgcaaactaaatttagttcct Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctacccagactaattgatgtgtgccttggtttctagAGGCTCTATAGGGCTTCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCCGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATCATCTCTCTGAATCTTACAATAAGgtaatgtgtgggacaggtccactcagaggtgcaaactaaatttagttcct Alignment from GeneWise TCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctacccagactaattgatgtgtgccttggtttctagaggctctatagGGCTTCGGA------TTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCTAATTTTAGTATCCGCTTGCATAGTTCGATTTGGCACAAATTCTTTCTGTAACTCCATCATCTCTCTGAATCTTACAATAAGgtaatgtgtgggacaggtccactcagaggtgcaaactaaatttagttcct #### Trpt1_ID1983_6 --> 2 - 1 Original Alignment atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCA-GGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc gaagaaagtgtgactatcacatgatcacctcagtgtctctgcttcttcagatGGAATTCCG---TTCTGCTTTGGCAACGGGGTGATTTTGACACCACGGGAATGTTGAAGGTTTCCTCCTTCCCAAGTACTCTAAAGAGGCTCTCCAGCTACGGCCTATGcgtggttttataacctggcctgagatgacactctctataagtctgtgtgaa Alignment from CESAR atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCA-GGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc gaagaaagtgtgactatcacatgatcacctcagtgtctctgcttcttcagatGGAATTCCG---TTCTGCTTTGGCAACGGGGTGATTTTGACACCACGGGAATGTTGAAGGTTTCCTCCTTCCCAAGTACTCTAAAGAGGCTCTCCAGCTACGGCCTATGcgtggttttataacctggcctgagatgacactctctataagtctgtgtgaa Alignment from Spaln_aa2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCA-GGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC gaagaaagtgtgactatcacatgatcacctcagtgtctctgcttcttcagATGGAATTCCG---TTCTGCTTTGGCAACGGGGTGATTTTGACACCAcGGGAATGTTGAAGGTTTCCTCCTTCCCAAGTACTCTAAAGAGGCTCTCCAGCTACGGCCTATGCgtggttttataacctggcctgagatgacactctctataagtctgtgtgaa Alignment from Spaln_nt2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCA-GGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC gaagaaagtgtgactatcacatgatcacctcagtgtctctgcttcttcagATGGAATTCC---GTTCTGCTTTGGCAACGGGGTGATTTTGACACCACGGGAATGTTGAAGGTTTCCTCCTTCCCAAGTACTCTAAAGAGGCTCTCCAGCTACGGCCTATGCgtggttttataacctggcctgagatgacactctctataagtctgtgtgaa Alignment from Pairagon ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCA-GGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC gaagaaagtgtgactatcacatgatcacctcagtgtctctgcttcttcagATGGAATTCC---GTTCTGCTTTGGCAACGGGGTGATTTTGACACCACGGGAATGTTGAAGGTTTCCTCCTTCCCAAGTACTCTAAAGAGGCTCTCCAGCTACGGCCTATGCgtggttttataacctggcctgagatgacactctctataagtctgtgtgaa Alignment from Exonerate_protein2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCA-GGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC gaagaaagtgtgactatcacatgatcacctcagtgtctctgcttcttcagATGGAATTCCG---TTCTGCTTTGGCAACGGGGTGATTTTGACACCACGGGAATGTTGAAGGTTTCCTCCTTCCCAAGTACTCTAAAGAGGCTCTCCAGCTACGGCCTATGCgtggttttataacctggcctgagatgacactctctataagtctgtgtgaa Alignment from Exonerate_coding2genome gaagaaagtgtgactatcacatgatcacctcagtgtctctgcttcttcagatggaattccgttctgctttggcaacggggtgattttgacaccacgggaatgttgaaggtttcctccttcccaagtactctaaagaggctctccagctacggcctatgcgtggttttataacctggcctgagatgacactctctataagtctgtgtgaa Alignment from GeneWise ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCA-GGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACACGA- gaagaaagtgtgactatcacatgatcacctcagtgtctctgcttcttcagATGGAATTCCGTTC---TGCTTTGGCAACGGGGTGATTTTGACACCACGGGAATGTTGAAGGTTTCCTCCTTCCCAAGTACTCTAAAGAGGCTCTCCAGCTACGGCCTATGCGTGgttttataacctggcctgagatgacactctctataagtctgtgtgaa #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataactattctctctttccttgtagaCAGAGAACTCGTGAAAAGATTGAAAGAGACAGAGCCCGAAAGGGCCAAGAAAgtaatagatcacaaagttcgtactcacctaggagggaatctagttaactt Alignment from CESAR aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataactattctctctttccttgtagaCAGAGAACTCGTGAAAAGATTGAAAGAGACAGAGCCCGAAAGGGCCAAGAAAgtaatagatcacaaagttcgtactcacctaggagggaatctagttaactt Alignment from Spaln_aa2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataactattctctctttccttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGAGCCcGAAAGGGCCAAGAAAgtaatagatcacaaagttcgtactcacctaggagggaatctagttaactt Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataactattctctctttccttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGAGCCCGAAAGGGCCAAGAAAgtaatagatcacaaagttcgtactcacctaggagggaatctagttaactt Alignment from Pairagon ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAG-CAGAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataactattctctctttccttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGAGCCCGAAAGGGCCAAGAAAgtaatagatcacaaagttcgtactcacctaggagggaatctagttaactt Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataactattctctctttccttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGAGCCCGAAAGGGCCAAGAAAgtaatagatcacaaagttcgtactcacctaggagggaatctagttaactt Alignment from Exonerate_coding2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataactattctctctttccttgtagACAGAGAACTCGTGAAAAGATTGAAAGAGACAGAGCCCGAAAGGGCCAAGAAAgtaatagatcacaaagttcgtactcacctaggagggaatctagttaactt Alignment from GeneWise tttgtcttgcgtctatgtttgttttataactattctctctttccttgtagacagagaactcgtgaaaagattgaaagagacagagcccgaaagggccaagaaagtaatagatcacaaagttcgtactcacctaggagggaatctagttaactt #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTG-CCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTAAACCATACACTTATCAATGTACAGATATGTggtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCC-ATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTAAACCATACACTTATCAATGTACAGATATGTggtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCC-ATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCCaATGATTTACTTCCTCAACAATTATTTGTATGACCTAAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCA-TGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTAAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCC-ATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTAAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTG-CCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTAAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTG-CCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTAAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAG-CTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaatgacagacctctctaatagttgaatgtgctcttttgttagTTGAGCTTCACATTTGCTCAGTTGCCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTAAACCATACACTTATCAATGTACAGATATGTGgtaagtttgtgagaacctggtaagtttgtctttgttccatatacagtcaa #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATT-TGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaacaaggaattgagccatactccctgctctcctcagacATTGATGAATGCCAAAACCCAGGTATCTGCGGCCAGATTCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAggtaagaaagtaactgaccaatgatacaaggttcggagtgtagcttactgt Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATT-TGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaacaaggaattgagccatactccctgctctcctcagacATTGATGAATGCCAAAACCCAGGTATCTGCGGCCAGATTCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAggtaagaaagtaactgaccaatgatacaaggttcggagtgtagcttactgt Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATT-TGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagccatactccctgctctcctcagACATTGATGAATGCCAAAACCCAGGTATCTGCGGCCAGATTcTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaagaaagtaactgaccaatgatacaaggttcggagtgtagcttactgt Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATT-TGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagccatactccctgctctcctcagACATTGATGAATGCCAAAACCCAGGTATCTGCGGCCAGATTCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaagaaagtaactgaccaatgatacaaggttcggagtgtagcttactgt Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATT-TGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagccatactccctgctctcctcagACATTGATGAATGCCAAAACCCAGGTATCTGCGGCCAGATTCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaagaaagtaactgaccaatgatacaaggttcggagtgtagcttactgt Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATT-TGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagccatactccctgctctcctcagACATTGATGAATGCCAAAACCCAGGTATCTGCGGCCAGATTCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaagaaagtaactgaccaatgatacaaggttcggagtgtagcttactgt Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATT-TGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagccatactccctgctctcctcagACATTGATGAATGCCAAAACCCAGGTATCTGCGGCCAGATTCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGgtaagaaagtaactgaccaatgatacaaggttcggagtgtagcttactgt Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAA-ATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGGCAAAGAG aatgggatatagagaacaaggaattgagccatactccctgctctcctcagACATTGATGAATGCCAAAACCCAGGTATCTGCGGCCAGATTCTGTATCAACTTAAAAGGCGGTTACAAGTGCGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGTGTGTGCAAGGCAATAGGTAAGAAAgtaactgaccaatgatacaaggttcggagtgtagcttactgt #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAAT-CGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atagcacttttcaagcgagtaagtttttttggtctatttctttcccataggcAAAGAGCCAAGTCTGATCTTTACTAATCCGAAGAGACATCAGAAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTAGCTCTTGATGCAGACATCGCAGCTCAGAAGCTCTTTTGGGCTGATTTTAGCCAGAAGGCTATTTTTaggtgagataaacctgcctcacagatgtctgggaagtgtattaaatggtatg Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAAT-CGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atagcacttttcaagcgagtaagtttttttggtctatttctttcccataggcAAAGAGCCAAGTCTGATCTTTACTAATCCGAAGAGACATCAGAAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTAGCTCTTGATGCAGACATCGCAGCTCAGAAGCTCTTTTGGGCTGATTTTAGCCAGAAGGCTATTTTTaggtgagataaacctgcctcacagatgtctgggaagtgtattaaatggtatg Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAAT-CGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcacttttcaagcgagtaagtttttttggtctatttctttcccatagGCAAAGAGCCAAGTCTGATCTTTACTAATcCGAAGAGACATCAGAAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTAGCTCTTGATGCAGACATCGCAGCTCAGAAGCTCTTTTGGGCTGATTTTAGCCAGAAGGCTATTTTTAGgtgagataaacctgcctcacagatgtctgggaagtgtattaaatggtatg Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATC-GAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcacttttcaagcgagtaagtttttttggtctatttctttcccatagGCAAAGAGCCAAGTCTGATCTTTACTAATCCGAAGAGACATCAGAAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTAGCTCTTGATGCAGACATCGCAGCTCAGAAGCTCTTTTGGGCTGATTTTAGCCAGAAGGCTATTTTTAGgtgagataaacctgcctcacagatgtctgggaagtgtattaaatggtatg Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAAT-CGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcacttttcaagcgagtaagtttttttggtctatttctttcccatagGCAAAGAGCCAAGTCTGATCTTTACTAATCCGAAGAGACATCAGAAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTAGCTCTTGATGCAGACATCGCAGCTCAGAAGCTCTTTTGGGCTGATTTTAGCCAGAAGGCTATTTTTAGgtgagataaacctgcctcacagatgtctgggaagtgtattaaatggtatg Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAAT-CGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcacttttcaagcgagtaagtttttttggtctatttctttcccatagGCAAAGAGCCAAGTCTGATCTTTACTAATCCGAAGAGACATCAGAAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTAGCTCTTGATGCAGACATCGCAGCTCAGAAGCTCTTTTGGGCTGATTTTAGCCAGAAGGCTATTTTTAGgtgagataaacctgcctcacagatgtctgggaagtgtattaaatggtatg Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAAT-CGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcacttttcaagcgagtaagtttttttggtctatttctttcccatagGCAAAGAGCCAAGTCTGATCTTTACTAATCCGAAGAGACATCAGAAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTAGCTCTTGATGCAGACATCGCAGCTCAGAAGCTCTTTTGGGCTGATTTTAGCCAGAAGGCTATTTTTAGgtgagataaacctgcctcacagatgtctgggaagtgtattaaatggtatg Alignment from GeneWise CCGAGTCTGATCTTCACTAAT-CGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcacttttcaagcgagtaagtttttttggtctatttctttcccataggcaaagagCCAAGTCTGATCTTTACTAATCCGAAGAGACATCAGAAAGATTGGCTTAGAAAGAAAAGAGTATATCCAACTTGTAGATCAATTGAGAAACACAGTAGCTCTTGATGCAGACATCGCAGCTCAGAAGCTCTTTTGGGCTGATTTTAGCCAGAAGGCTATTTTTAGgtgagataaacctgcctcacagatgtctgggaagtgtattaaatggtatg #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTCGTGGCAGGAATGGCATTAGGATTAAAAGCACTAATTGGTGGAGCTGTTggtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTCGTGGCAGGAATGGCATTAGGATTAAAAGCACTAATTGGTGGAGCTGTTggtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTcGTGGCAGGAATGGCATTAGGATTAAAAGCACTAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTCGTGGCAGGAATGGCATTAGGATTAAAAGCACTAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTCGTGGCAGGAATGGCATTAGGATTAAAAGCACTAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTCGTGGCAGGAATGGCATTAGGATTAAAAGCACTAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTCGTGGCAGGAATGGCATTAGGATTAAAAGCACTAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtttttatcccttttatttctctggccccagGGGGCTATCCAAGGTCCTGAAGAATTTCGTGGCAGGAATGGCATTAGGATTAAAAGCACTAATTGGTGGAGCTGTTGgtatggtgtaacagaactagtgatgcaagtcacaccagtggggaaaaggc #### Vps13a_ID4068_55 --> 1 - 0 Original Alignment tTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAG-TACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG aagtagcagtgaaagtctattgagcttcgcctcttttcttcctctcatagtACTGATGTGGTTTGGGAGGCAAAACCAAAGGAGAAGACCAGGTGGAAACCCATG---ATTAAGCACACAGTCAAGCTAGAGAAGGGGTTTAGGGCACTACACGGAGGCCTCACCATTGGAGGACAAGGTGGTGGAGTTGGACAACATCCCAgtactctctatcttgtgctgcctgtgtgcaatacttgagaaatgattttc Alignment from CESAR tTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGGAG-TACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG aagtagcagtgaaagtctattgagcttcgcctcttttcttcctctcatagtACTGATGTGGTTTGGGAGGCAAAACCAAAGGAGAAGACCAGGTGGAAACCCATG---ATTAAGCACACAGTCAAGCTAGAGAAGGGGTTTAGGGCACTACACGGAGGCCTCACCATTGGAGGACAAGGTGGTGGAGTTGGACAACATCCCAgtactctctatcttgtgctgcctgtgtgcaatacttgagaaatgattttc Alignment from Spaln_aa2Genome TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGG-GAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG aagtagcagtgaaagtctattgagcttcgcctcttttcttcctctcatagTACTGATGTGGTTTGGGAGGCAAAACCAAAGGAGAAGACCAGGTGGAAACCCATG---ATTAAGCACACAGTCAAGCTAGAGAAGGGGTTTAGGgCACTACACGGAGGCCTCACCATTGGAGGACAAGGTGGTGGAGTTGGACAACATCCCAgtactctctatcttgtgctgcctgtgtgcaatacttgagaaatgattttc Alignment from Spaln_nt2Genome TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGG-AGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG aagtagcagtgaaagtctattgagcttcgcctcttttcttcctctcatagTACTGATGTGGTTTGGGAGGCAAAACCAAAGGAGAAGACCAGGTGGAAACCCATGA---TTAAGCACACAGTCAAGCTAGAGAAGGGGTTTAGGGCACTACACGGAGGCCTCACCATTGGAGGACAAGGTGGTGGAGTTGGACAACATCCCAgtactctctatcttgtgctgcctgtgtgcaatacttgagaaatgattttc Alignment from Pairagon TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGGG-AGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG aagtagcagtgaaagtctattgagcttcgcctcttttcttcctctcatagTACTGATGTGGTTTGGGAGGCAAAACCAAAGGAGAAGACCAGGTGGAAACCCATGA---TTAAGCACACAGTCAAGCTAGAGAAGGGGTTTAGGGCACTACACGGAGGCCTCACCATTGGAGGACAAGGTGGTGGAGTTGGACAACATCCCAgtactctctatcttgtgctgcctgtgtgcaatacttgagaaatgattttc Alignment from Exonerate_protein2genome TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGG-GAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG aagtagcagtgaaagtctattgagcttcgcctcttttcttcctctcatagTACTGATGTGGTTTGGGAGGCAAAACCAAAGGAGAAGACCAGGTGGAAACCCATG---ATTAAGCACACAGTCAAGCTAGAGAAGGGGTTTAGGGCACTACACGGAGGCCTCACCATTGGAGGACAAGGTGGTGGAGTTGGACAACATCCCAgtactctctatcttgtgctgcctgtgtgcaatacttgagaaatgattttc Alignment from Exonerate_coding2genome TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGG-GAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG aagtagcagtgaaagtctattgagcttcgcctcttttcttcctctcatagTACTGATGTGGTTTGGGAGGCAAAACCAAAGGAGAAGACCAGGTGGAAACCCATG---ATTAAGCACACAGTCAAGCTAGAGAAGGGGTTTAGGGCACTACACGGAGGCCTCACCATTGGAGGACAAGGTGGTGGAGTTGGACAACATCCCAgtactctctatcttgtgctgcctgtgtgcaatacttgagaaatgattttc Alignment from GeneWise TTCTGATGTGGTTTGGGAGGCAAAACCAAAGAAGAAGGCCAGGTGGAAGCCCATGAGTGTGAAGCACACAGAGAAGCTGGAGAAGGAGTTCAGG-GAGTACACAGAGGCCTCGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCG aagtagcagtgaaagtctattgagcttcgcctcttttcttcctctcatagTACTGATGTGGTTTGGGAGGCAAAACCAAAGGAGAAGACCAGGTGGAAACCCATG---ATTAAGCACACAGTCAAGCTAGAGAAGGGGTTTAGGGCACTACACGGAGGCCTCACCATTGGAGGACAAGGTGGTGGAGTTGGACAACATCCCAgtactctctatcttgtgctgcctgtgtgcaatacttgagaaatgattttc #### Vps13a_ID4109_14 --> 0 - 0 Original Alignment GAGTTGGAGAAAACTTTGGATGTT-TTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatgaatcctacacttgttttgatgcagGAGTTAGAGAAAACTTTGGATGTTCTTGAATATGCCCATAACTAGACAGCAAGCAGAGGTTGAGgtgagtccacactgtcatttaaataaatcatgagacgttatatttcttcc Alignment from CESAR GAGTTGGAGAAAACTTTGGATGTTTTT-AATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatgaatcctacacttgttttgatgcagGAGTTAGAGAAAACTTTGGATGTTCTTGAATATGCCCATAACTAGACAGCAAGCAGAGGTTGAGgtgagtccacactgtcatttaaataaatcatgagacgttatatttcttcc Alignment from Spaln_aa2Genome GAGTTGGAGAAAACTTTGGATGTT-TTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatgaatcctacacttgttttgatgcagGAGTTAGAGAAAACTTTGGATGTTcTTGAATATGCCCATAACTAGACAGCAAGCAGAGGTTGAGgtgagtccacactgtcatttaaataaatcatgagacgttatatttcttcc Alignment from Spaln_nt2Genome GAGTTGGAGAAAACTTTGGATGTTTTT-AATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatgaatcctacacttgttttgatgcagGAGTTAGAGAAAACTTTGGATGTTCTTGAATATGCCCATAACTAGACAGCAAGCAGAGGTTGAGgtgagtccacactgtcatttaaataaatcatgagacgttatatttcttcc Alignment from Pairagon GAGTTGGAGAAAACTTTGGATGTTTTT-AATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatgaatcctacacttgttttgatgcagGAGTTAGAGAAAACTTTGGATGTTCTTGAATATGCCCATAACTAGACAGCAAGCAGAGGTTGAGgtgagtccacactgtcatttaaataaatcatgagacgttatatttcttcc Alignment from Exonerate_protein2genome GAGTTGGAGAAAACTTTGGATGTT-TTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ctaatattaggagggttttatctatgaatcctacacttgttttgatgcagGAGTTAGAGAAAACTTTGGATGTTCTTGAATATGCCCATAACTAGACAGCAAGCAGAGGTTGAGgtgagtccacactgtcatttaaataaatcatgagacgttatatttcttcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ctaatattaggagggttttatctatgaatcctacacttgttttgatgcaggagttagagaaaactttggatgttcttgaatatgcccataactagacagcaagcagaggttgaggtgagtccacactgtcatttaaataaatcatgagacgttatatttcttcc #### Vps37c_ID2983_3 --> 2 - 0 Original Alignment agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGAC-CTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagagAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCCTCCTGCAGATTGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from CESAR agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGAC-CTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagagAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCCTCCTGCAGATTGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Spaln_aa2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGAC-CTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACcCTCCTGCAGATTGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Spaln_nt2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTC-TGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCCTCCTGCAGATTGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Pairagon AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGA-CCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCCTCCTGCAGATTGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Exonerate_protein2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGAC-CTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCCTCCTGCAGATTGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from Exonerate_coding2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGAC-CTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCCTCCTGCAGATTGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg Alignment from GeneWise AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGAC-CTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG ctttaattaaggcaatgtgtttgaaagatgtgcattctgcccttttctagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCCTCCTGCAGATTGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtgaggtaagcattactccttgttttggcctaatccattaaacagtgctg #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTC-ACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccggactcccctgcccttgcttgactttcattttccccacagacTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtacgagggttagagaacctggggctaacagtttgccctcatggaaactt Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTC-ACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccggactcccctgcccttgcttgactttcattttccccacagacTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtacgagggttagagaacctggggctaacagtttgccctcatggaaactt Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTG-GATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccggactcccctgcccttgcttgactttcattttccccacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCCACCTTgGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtacgagggttagagaacctggggctaacagtttgccctcatggaaactt Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTC-ACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccggactcccctgcccttgcttgactttcattttccccacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtacgagggttagagaacctggggctaacagtttgccctcatggaaactt Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTT-CACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccggactcccctgcccttgcttgactttcattttccccacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtacgagggttagagaacctggggctaacagtttgccctcatggaaactt Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTC-ACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccggactcccctgcccttgcttgactttcattttccccacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtacgagggttagagaacctggggctaacagtttgccctcatggaaactt Alignment from Exonerate_coding2genome attacttcccggactcccctgcccttgcttgactttcattttccccacagactgtaactttgaagggagaaaggtagtcaatggtcaggttttccaccttggatgatgagccctgtacccggtgcatctgccaggtacgagggttagagaacctggggctaacagtttgccctcatggaaactt Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTC-ACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccggactcccctgcccttgcttgactttcattttccccacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtacgagggttagagaacctggggctaacagtttgccctcatggaaactt #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtatttagccacctcagtattcccatgttttccttcttgcagggGTGAACCTTCAGCGTAAACATACAGCCAATTTTGCTCCATTGGGACCAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGTACTGGCAGTGAGACCCAAgtgagtaggctacagcttggtcaaagtcacaagagctgtagaattcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtatttagccacctcagtattcccatgttttccttcttgcagggGTGAACCTTCAGCGTAAACATACAGCCAATTTTGCTCCATTGGGACCAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGTACTGGCAGTGAGACCCAAgtgagtaggctacagcttggtcaaagtcacaagagctgtagaattcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtatttagccacctcagtattcccatgttttccttcttgcagGGGTGAACCTTCAGCGTAAACATACAGCCAATTTTGCTCCATTGGGAcCAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGTACTGGCAGTGAGACCCAAgtgagtaggctacagcttggtcaaagtcacaagagctgtagaattcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGAC-AGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtatttagccacctcagtattcccatgttttccttcttgcagGGGTGAACCTTCAGCGTAAACATACAGCCAATTTTGCTCCATTGGGACCAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGTACTGGCAGTGAGACCCAAgtgagtaggctacagcttggtcaaagtcacaagagctgtagaattcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtatttagccacctcagtattcccatgttttccttcttgcagGGGTGAACCTTCAGCGTAAACATACAGCCAATTTTGCTCCATTGGGACCAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGTACTGGCAGTGAGACCCAAgtgagtaggctacagcttggtcaaagtcacaagagctgtagaattcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtatttagccacctcagtattcccatgttttccttcttgcagGGGTGAACCTTCAGCGTAAACATACAGCCAATTTTGCTCCATTGGGACCAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGTACTGGCAGTGAGACCCAAgtgagtaggctacagcttggtcaaagtcacaagagctgtagaattcctga Alignment from Exonerate_coding2genome ATCCTGAAAGGGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtatttagccacctcagtattcccatgttttcCTTCTTGCAGGGGTGAACCTTCAGCGTAAACATACAGCCAATTTTGCTCCATTGGGACCAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGTACTGGCAGTGAGACCCAAgtgagtaggctacagcttggtcaaagtcacaagagctgtagaattcctga Alignment from GeneWise GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCG-TCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtatttagccacctcagtattcccatgttttccttcttgcagGGGTGAACCTTCAGCGTAAACATACAGCCAATTTTGCTCCATTGGGACCAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGTACTGGCAGTGAGACCCAAgtgagtaggctacagcttggtcaaagtcacaagagctgtagaattcctga #### Wdr74_ID2314_4 --> 1 - 0 Original Alignment cACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttagccaacatgccttgctttgtccttgaattccagaACTCTTATTACACTGTGTAGATTCTGGAATCCTGAGAGTGTGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCGgtgagtttattcccccatcataggtggcttggataaggttctaatgggca Alignment from CESAR cACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttagccaacatgccttgctttgtccttgaattccagaACTCTTATTACACTGTGTAGATTCTGGAATCCTGAGAGTGTGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCGgtgagtttattcccccatcataggtggcttggataaggttctaatgggca Alignment from Spaln_aa2Genome CACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttagccaacatgccttgctttgtccttgaattccagAACTCTTATTACAcTGTGTAGATTCTGGAATCCTGAGAGTGTGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCGgtgagtttattcccccatcataggtggcttggataaggttctaatgggca Alignment from Spaln_nt2Genome CACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttagccaacatgccttgctttgtccttgaattccagAACTCTTATTACACTGTGTAGATTCTGGAATCCTGAGAGTGTGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCGgtgagtttattcccccatcataggtggcttggataaggttctaatgggca Alignment from Pairagon CACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttagccaacatgccttgctttgtccttgaattccagAACTCTTATTACACTGTGTAGATTCTGGAATCCTGAGAGTGTGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCGgtgagtttattcccccatcataggtggcttggataaggttctaatgggca Alignment from Exonerate_protein2genome CACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttagccaacatgccttgctttgtccttgaattccagAACTCTTATTACACTGTGTAGATTCTGGAATCCTGAGAGTGTGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCGgtgagtttattcccccatcataggtggcttggataaggttctaatgggca Alignment from Exonerate_coding2genome CACCCTTATCACA-TGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttagccaacatgccttgctttgtccttgaattccagAACTCTTATTACACTGTGTAGATTCTGGAATCCTGAGAGTGTGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCGgtgagtttattcccccatcataggtggcttggataaggttctaatgggca Alignment from GeneWise CACCCTTATC-ACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttagccaacatgccttgctttgtccttgaattccagAACTCTTATTACACTGTGTAGATTCTGGAATCCTGAGAGTGTGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCGgtgagtttattcccccatcataggtggcttggataaggttctaatgggca #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAg aaatgcaattcaggagtcacacaaatccactgacttttgccccctttcagtTCTGTCATTGTGGGGAATACTCATGGGCAGCTGGCAGAAATTCGACTTTCGGCAAggtgagtgcaccattgagttcttgagaacgaaagtaatctgccaaattctt Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAg aaatgcaattcaggagtcacacaaatccactgacttttgccccctttcagtTCTGTCATTGTGGGGAATACTCATGGGCAGCTGGCAGAAATTCGACTTTCGGCAAggtgagtgcaccattgagttcttgagaacgaaagtaatctgccaaattctc Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgcaattcaggagtcacacaaatccactgacttttgccccctttcagTTCTGTCATTGTGGGGAATACTCATGGGCAGCTGGCAGAAATTcGACTTTCGGCAAGgtgagtgcaccattgagttcttgagaacgaaagtaatctgccaaattctt Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgcaattcaggagtcacacaaatccactgacttttgccccctttcagTTCTGTCATTGTGGGGAATACTCATGGGCAGCTGGCAGAAATTCGACTTTCGGCAAGgtgagtgcaccattgagttcttgagaacgaaagtaatctgccaaattctt Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgcaattcaggagtcacacaaatccactgacttttgccccctttcagTTCTGTCATTGTGGGGAATACTCATGGGCAGCTGGCAGAAATTCGACTTTCGGCAAGgtgagtgcaccattgagttcttgagaacgaaagtaatctgccaaattctt Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgcaattcaggagtcacacaaatccactgacttttgccccctttcagTTCTGTCATTGTGGGGAATACTCATGGGCAGCTGGCAGAAATTCGACTTTCGGCAAGgtgagtgcaccattgagttcttgagaacgaaagtaatctgccaaattctt Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgcaattcaggagtcacacaaatccactgacttttgccccctttcagTTCTGTCATTGTGGGGAATACTCATGGGCAGCTGGCAGAAATTCGACTTTCGGCAAGgtgagtgcaccattgagttcttgagaacgaaagtaatctgccaaattctt Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAGGGCG aaatgcaattcaggagtcacacaaatccactgacttttgccccctttcagTTCTGTCATTGTGGGGAATACTCATGGGCAGCTGGCAGAAATTCGACTT---TCGGCAAGgtgagtgcaccattgagttcttgagaacgaaagtaatctgccaaattctt #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTG-AACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTCAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from CESAR GTTTATCTCAAGTCTCAACTG-AACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTCAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTG-AACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTcAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTG-AACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTCAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Pairagon GTTTATCTCAAGTCTCAAC-TGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTCAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTG-AACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTCAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTG-AACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTCAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from GeneWise ctatgacagacttaggctatacacactctgtgcctgaattctcccttcaggtttatcttaagtgtcaacttcaattgtctgctcctgtcaggccgggataactgggaggtaactaaggaataaataaataaaataaggcctttggtgataggcattta #### Wdr96_ID10335_36 --> 0 - 0 Original Alignment TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGT-GTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTCGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from CESAR TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGT-GTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTCGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Spaln_aa2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGT-GTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTcGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Spaln_nt2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGT-GTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTCGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Pairagon TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGT-GTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTCGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Exonerate_protein2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGT-GTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTCGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Exonerate_coding2genome gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagtacctaaatgaaccaaactacaggaatgtaatcactatactgattggaataatggagcagacaattggtcgttgtagataaggtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from GeneWise TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATT-AGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTCGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGA-GAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccatggcttttatacctctctcctttctttccctcagggGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGACGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAGGATGCCCGAGCAGCAATAAACTTGCACAACAATGAAGCTGGCCGCAAGgtaagacccatagtggttgatgcatgcatcatgagtcttgttaatgtagt Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGA-GAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccatggcttttatacctctctcctttctttccctcagggGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGACGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAGGATGCCCGAGCAGCAATAAACTTGCACAACAATGAAGCTGGCCGCAAGgtaagacccatagtggttgatgcatgcatcatgagtcttgttaatgtagt Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGA-GAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccatggcttttatacctctctcctttctttccctcagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAcGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAGGATGCCCGAGCAGCAATAAACTTGCACAACAATGAAGCTGGCCGCAAGgtaagacccatagtggttgatgcatgcatcatgagtcttgttaatgtagt Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGA-GAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccatggcttttatacctctctcctttctttccctcagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGACGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAGGATGCCCGAGCAGCAATAAACTTGCACAACAATGAAGCTGGCCGCAAGgtaagacccatagtggttgatgcatgcatcatgagtcttgttaatgtagt Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGA-GAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccatggcttttatacctctctcctttctttccctcagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGACGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAGGATGCCCGAGCAGCAATAAACTTGCACAACAATGAAGCTGGCCGCAAGgtaagacccatagtggttgatgcatgcatcatgagtcttgttaatgtagt Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGA-GAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccatggcttttatacctctctcctttctttccctcagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGACGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAGGATGCCCGAGCAGCAATAAACTTGCACAACAATGAAGCTGGCCGCAAGgtaagacccatagtggttgatgcatgcatcatgagtcttgttaatgtagt Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGA-GAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccatggcttttatacctctctcctttctttccctcagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGACGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAGGATGCCCGAGCAGCAATAAACTTGCACAACAATGAAGCTGGCCGCAAGgtaagacccatagtggttgatgcatgcatcatgagtcttgttaatgtagt Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGA-GAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccatggcttttatacctctctcctttctttccctcagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGACGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAGGATGCCCGAGCAGCAATAAACTTGCACAACAATGAAGCTGGCCGCAAGgtaagacccatagtggttgatgcatgcatcatgagtcttgttaatgtagt #### Yif1a_ID832_4 --> 0 - 1 Original Alignment AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTC-AATGCCCCTGACCTCTATATCCCCa gaggcaagttattttattgctcatattgacctcctcttgtcttcctccagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCTCGGAAAGATCTGCAATACCCCTGACCTTTATATCCCAagtaagttggtgacgcacagttaagctccacctctgtgcttagcaacaatg Alignment from CESAR AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTC-AATGCCCCTGACCTCTATATCCCCa gaggcaagttattttattgctcatattgacctcctcttgtcttcctccagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCTCGGAAAGATCTGCAATACCCCTGACCTTTATATCCCAagtaagttggtgacgcacagttaagctccacctctgtgcttagcaacaatg Alignment from Spaln_aa2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTC-AATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatattgacctcctcttgtcttcctccagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCTCGGAAAGATCTGcAATACCCCTGACCTTTATATCCCAAgtaagttggtgacgcacagttaagctccacctctgtgcttagcaacaatg Alignment from Spaln_nt2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCT-CAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatattgacctcctcttgtcttcctccagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCTCGGAAAGATCTGCAATACCCCTGACCTTTATATCCCAAgtaagttggtgacgcacagttaagctccacctctgtgcttagcaacaatg Alignment from Pairagon AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCT-CAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatattgacctcctcttgtcttcctccagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCTCGGAAAGATCTGCAATACCCCTGACCTTTATATCCCAAgtaagttggtgacgcacagttaagctccacctctgtgcttagcaacaatg Alignment from Exonerate_protein2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTC-AATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatattgacctcctcttgtcttcctccagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCTCGGAAAGATCTGCAATACCCCTGACCTTTATATCCCAAgtaagttggtgacgcacagttaagctccacctctgtgcttagcaacaatg Alignment from Exonerate_coding2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTC-AATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatattgacctcctcttgtcttcctccagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCTCGGAAAGATCTGCAATACCCCTGACCTTTATATCCCAAgtaagttggtgacgcacagttaagctccacctctgtgcttagcaacaatg Alignment from GeneWise AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGAT-CTCAATGCCCCTGACCTCTATATCCCCA gaggcaagttattttattgctcatattgacctcctcttgtcttcctccagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCTCGGAAAGATCTGCAATACCCCTGACCTTTATATCCCAAgtaagttggtgacgcacagttaagctccacctctgtgcttagcaacaatg #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTT-ATGTACTTCATT gaccacattctttgattcattcgctcaggagcttcctttttgctttgcaggATGAATTTGAGCGTACTTACAGCGCTACTTTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTCATGTACTTCATTgtaactgtgggatggttccagcctcccttccatgactcacatccccctct Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTT-ATGTACTTCATT gaccacattctttgattcattcgctcaggagcttcctttttgctttgcaggATGAATTTGAGCGTACTTACAGCGCTACTTTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTCATGTACTTCATTgtaactgtgggatggttccagcctcccttccatgactcacctgtgggctc Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTT-ATGTACTTCATT gaccacattctttgattcattcgctcaggagcttcctttttgctttgcagGATGAATTTGAGCGTACTTACAGCGCTACTTTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTcATGTACTTCATTgtaactgtgggatggttccagcctcccttccatgactcacatccccctct Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTT-ATGTACTTCATT gaccacattctttgattcattcgctcaggagcttcctttttgctttgcagGATGAATTTGAGCGTACTTACAGCGCTACTTTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTCATGTACTTCATTgtaactgtgggatggttccagcctcccttccatgactcacatccccctct Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTT-ATGTACTTCATT gaccacattctttgattcattcgctcaggagcttcctttttgctttgcagGATGAATTTGAGCGTACTTACAGCGCTACTTTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTCATGTACTTCATTgtaactgtgggatggttccagcctcccttccatgactcacatccccctct Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTT-ATGTACTTCATT gaccacattctttgattcattcgctcaggagcttcctttttgctttgcagGATGAATTTGAGCGTACTTACAGCGCTACTTTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTCATGTACTTCATTgtaactgtgggatggttccagcctcccttccatgactcacatccccctct Alignment from Exonerate_coding2genome gaccacattctttgattcattcgctcaggagcttcctttttgctttgcaggatgaatttgagcgtacttacagcgctactttttggcagtgacaggtattatgtggtcttggcctgggcttcatctcctcttcatgtacttcattgtaactgtgggatggttccagcctcccttccatgactcacatccccctct Alignment from GeneWise GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT gaccacattctttgattcattcgctcaggagcttcctttttgctttgcagGATGAATTTGAGCGTACTTACAGCGCTACTTTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTT---------CATgtacttcattgtaactgtgggatggttccagcctcccttccatgactcacatccccctct #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGG-GGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gcaatcaaagccccaggagtttcaggttagtgtgtatgttctatccccagtTCTGTGGCCCTGGCTCTGGGCGCCCTTACCATGTGGCACGCTGTCCTGATTAGTCGGCGGTAAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaacggttggacgtaccgcttgattatgtggaaaaatgaccgtgcatat Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGG-GGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gcaatcaaagccccaggagtttcaggttagtgtgtatgttctatccccagtTCTGTGGCCCTGGCTCTGGGCGCCCTTACCATGTGGCACGCTGTCCTGATTAGTCGGCGGTAAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaacggttggacgtaccgcttgattatgtggaaaaatgaccgtgcatat Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGG-GGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gcaatcaaagccccaggagtttcaggttagtgtgtatgttctatccccagTTCTGTGGCCCTGGCTCTGGGCGCCCTTACCATGTGGCACGCTGTCCTGATTAGTCGGcGGTAAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaacggttggacgtaccgcttgattatgtggaaaaatgaccgtgcatat Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGG-GGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gcaatcaaagccccaggagtttcaggttagtgtgtatgttctatccccagTTCTGTGGCCCTGGCTCTGGGCGCCCTTACCATGTGGCACGCTGTCCTGATTAGTCGGCGGTAAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaacggttggacgtaccgcttgattatgtggaaaaatgaccgtgcatat Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGG-GGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gcaatcaaagccccaggagtttcaggttagtgtgtatgttctatccccagTTCTGTGGCCCTGGCTCTGGGCGCCCTTACCATGTGGCACGCTGTCCTGATTAGTCGGCGGTAAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaacggttggacgtaccgcttgattatgtggaaaaatgaccgtgcatat Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGG-GGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gcaatcaaagccccaggagtttcaggttagtgtgtatgttctatccccagTTCTGTGGCCCTGGCTCTGGGCGCCCTTACCATGTGGCACGCTGTCCTGATTAGTCGGCGGTAAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaacggttggacgtaccgcttgattatgtggaaaaatgaccgtgcatat Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGG-GGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gcaatcaaagccccaggagtttcaggttagtgtgtatgttctatccccagTTCTGTGGCCCTGGCTCTGGGCGCCCTTACCATGTGGCACGCTGTCCTGATTAGTCGGCGGTAAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaacggttggacgtaccgcttgattatgtggaaaaatgaccgtgcatat Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGT-CGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gcaatcaaagccccaggagtttcaggttagtgtgtatgttctatccccagTTCTGTGGCCCTGGCTCTGGGCGCCCTTACCATGTGGCACGCTGTCCTGATTAGTCGGCGGTAAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaacggttggacgtaccgcttgattatgtggaaaaatgaccgtgcatat #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGC-TGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACG---GAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGaggtaagcggagggggttctttatcgagaaactgaaagacatgaaacattta Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGC-TGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACG---GAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGaggtaagcggagggggttctttatcgagaaactgaaaaccacactctggttt Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGC-TGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCcTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACGGAG---CCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaagacatgaaacattta Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGC-TGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTAC---GGAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaagacatgaaacattta Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTG-CTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTAC---GGAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaagacatgaaacattta Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCC-TGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACG---GAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaagacatgaaacattta Alignment from Exonerate_coding2genome ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT----GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCC-TGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaATTAGACAGGGGTCCGTCGTAGCTCATGCCCTGATGTCACCCATAGGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACG---GAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaagacatgaaacattta Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCC-TGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACGGAG---CCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaagacatgaaacattta #### Zdhhc6_ID11622_7 --> 0 - 0 Original Alignment ATAGAACAGTTGAAGCAAAAG-GCAGACAAGAGAGTCAGAAGT aggctgctcagttattagttgtctccctctcctcctctgtttccgagcagATAGAACAGCCAAAGCAAAAGCGTGGACAAGAAAGTCAGAACTgtaagtgttgtctaatagcagtgaatgctgatttctgcatgagacctaag Alignment from CESAR ATAGAACAGTTGAAGCAAAAG-GCAGACAAGAGAGTCAGAAGT aggctgctcagttattagttgtctccctctcctcctctgtttccgagcagATAGAACAGCCAAAGCAAAAGCGTGGACAAGAAAGTCAGAACTgtaagtgttgtctaatagcagtgaatgctgatttctgcatgagacctaag Alignment from Spaln_aa2Genome ATAGAACAGTTGAAGCAAAAG-GCAGACAAGAGAGTCAGAAGT aggctgctcagttattagttgtctccctctcctcctctgtttccgagcagATAGAACAGCCAAAGCAAAAGcGTGGACAAGAAAGTCAGAACTgtaagtgttgtctaatagcagtgaatgctgatttctgcatgagacctaag Alignment from Spaln_nt2Genome ATAGAACAGTTGAAGCAAAAG-GCAGACAAGAGAGTCAGAAGT aggctgctcagttattagttgtctccctctcctcctctgtttccgagcagATAGAACAGCCAAAGCAAAAGCGTGGACAAGAAAGTCAGAACTgtaagtgttgtctaatagcagtgaatgctgatttctgcatgagacctaag Alignment from Pairagon ATAGAACAGTTGAAGCAAAAG-GCAGACAAGAGAGTCAGAAGT aggctgctcagttattagttgtctccctctcctcctctgtttccgagcagATAGAACAGCCAAAGCAAAAGCGTGGACAAGAAAGTCAGAACTgtaagtgttgtctaatagcagtgaatgctgatttctgcatgagacctaag Alignment from Exonerate_protein2genome aggctgctcagttattagttgtctccctctcctcctctgtttccgagcagatagaacagccaaagcaaaagcgtggacaagaaagtcagaactgtaagtgttgtctaatagcagtgaatgctgatttctgcatgagacctaag Alignment from Exonerate_coding2genome aggctgctcagttattagttgtctccctctcctcctctgtttccgagcagatagaacagccaaagcaaaagcgtggacaagaaagtcagaactgtaagtgttgtctaatagcagtgaatgctgatttctgcatgagacctaag Alignment from GeneWise aggctgctcagttattagttgtctccctctcctcctctgtttccgagcagatagaacagccaaagcaaaagcgtggacaagaaagtcagaactgtaagtgttgtctaatagcagtgaatgctgatttctgcatgagacctaag #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGT-TTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagggACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCAGATGCTGGCCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGT-TTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagggACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCAGATGCTGGCCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGT-TTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCAGATGCTGGCcTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGT-TTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCAGATGCTGGCCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGG-TTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCAGATGCTGGCCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGT-TTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCAGATGCTGGCCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGT-TTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCAGATGCTGGCCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGT-TTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttgagggagatatgaatcatcatgcctctgttctgccctcctagGGACAGCCAGTGGCTCTAATAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCAGATGCTGGCCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtaagtagggccatttcttgcattttctagactatacttataagccttta #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACATCAGTCT-CCCGGTGGCATTag atagaggttgagtttttggcagtgtatgatcctttctcatttttcttaagacGTTCCTGAAGAGCAACGAACACCCTGGTGGGATTaggtacttggttgctccctatacacccgatgcttcatattgcagaatgtttc Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCC-GGTGGCATTag atagaggttgagtttttggcagtgtatgatcctttctcatttttcttaagacGTTCCTGAAGAGCAACGAACACCCTGGTGGGATTaggtacttggttgctccctatacacccgatgcttcatattgcagaatgtttc Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGG atagaggttgagtttttggcagtgtatgatcctttctcatttttcttaagACGTTCCTGAAGAGCAACGAACACCCTGgtgggattaggtacttggttgctccctatacacccgatgcttcatattgcagaatgtttc Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCC-GGTGGCATTAG atagaggttgagtttttggcagtgtatgatcctttctcatttttcttaagACGTTCCTGAAGAGCAACGAACACCCTGGTGGGATTAGgtacttggttgctccctatacacccgatgcttcatattgcagaatgtttc Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCC-GGTGGCATTAG atagaggttgagtttttggcagtgtatgatcctttctcatttttcttaagACGTTCCTGAAGAGCAACGAACACCCTGGTGGGATTAGgtacttggttgctccctatacacccgatgcttcatattgcagaatgtttc Alignment from Exonerate_protein2genome atagaggttgagtttttggcagtgtatgatcctttctcatttttcttaagacgttcctgaagagcaacgaacaccctggtgggattaggtacttggttgctccctatacacccgatgcttcatattgcagaatgtttc Alignment from Exonerate_coding2genome atagaggttgagtttttggcagtgtatgatcctttctcatttttcttaagacgttcctgaagagcaacgaacaccctggtgggattaggtacttggttgctccctatacacccgatgcttcatattgcagaatgtttc Alignment from GeneWise atagaggttgagtttttggcagtgtatgatcctttctcatttttcttaagacgttcctgaagagcaacgaacaccctggtgggattaggtacttggttgctccctatacacccgatgcttcatattgcagaatgtttc #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGC-TCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAggtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGC-TCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAggtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGC-TCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCcTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGC-TCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTG-CTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGC-TCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGC-TCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGC-TCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG atatatacggtccaaaggtcacactccttcgtctctgctttttctcctagCGAAGCTGCACCAACTGTGCAAACAGCTTCTGCTCTCATTGCTGCCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtgctgggggagaattgtagataggctcagacaaagaaagctcctaggac #### Zp1_ID3062_10 --> 0 - 1 Original Alignment GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGAC-TCTGGGATAGCAa cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATCTCTGGGATAGCAagtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from CESAR GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGAC-TCTGGGATAGCAa cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATCTCTGGGATAGCAagtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Spaln_aa2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATCTCTGG---GATAgcaagtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Spaln_nt2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGA-CTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATCTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Pairagon GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGA-CTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATCTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Exonerate_protein2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGAC-TCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATCTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Exonerate_coding2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGAC-TCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATCTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from GeneWise GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGAC-TCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATCTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt #### Zp1_ID3065_7 --> 1 - 1 Original Alignment gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATC-TTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg ggtgcatgcaaaacagaataactgaaaattcttgtctgtctgtgtttcaggCTTCATGTTCGCTGCATCTTCAATTCTAGTGATTTCCTCCCCCTACAGGCATCTATCCTCT---CCCCACCCACCTGCCCCTGTAACACAATCTGGAGCACTTAGGCTGCAATTGAAGATTGCCATGggtaagtggctccagtttgggcggtactttccaacctcgcagcttgaaata Alignment from CESAR gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg ggtgcatgcaaaacagaataactgaaaattcttgtctgtctgtgtttcaggCTTCATGTTCGCTGCATCTTCAATTCTAGTGATTTCCTCCCCCTACAGGCATCTATCC--TCTCCCCACCCACCTGCCCCTGTAACACAATCTGGAGCACTTAGGCTGCAATTGAAGATTGCCATGggtaagtggctccagtttgggcggtactttccaacctcgcagcttgaaata Alignment from Spaln_aa2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaataactgaaaattcttgtctgtctgtgtttcagGCTTCATGTTCGCTGCATCTTCAATTCTAGTGATTTCCTCCCCCTACAGGCATCTATCC--TCTCCCCACCCACCTGCCCCTGTAACACAATCTGGAGCACTTAGGCTGCAATTGAAGATTGCCATGGgtaagtggctccagtttgggcggtactttccaacctcgcagcttgaaata Alignment from Spaln_nt2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaataactgaaaattcttgtctgtctgtgtttcagGCTTCATGTTCGCTGCATCTTCAATTCTAGTGATTTCCTCCCCCTACAGGCATCTATCCTCTC--CCCACCCACCTGCCCCTGTAACACAATCTGGAGCACTTAGGCTGCAATTGAAGATTGCCATGGgtaagtggctccagtttgggcggtactttccaacctcgcagcttgaaata Alignment from Pairagon GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaataactgaaaattcttgtctgtctgtgtttcagGCTTCATGTTCGCTGCATCTTCAATTCTAGTGATTTCCTCCCCCTACAGGCATCTATCCTCT--CCCCACCCACCTGCCCCTGTAACACAATCTGGAGCACTTAGGCTGCAATTGAAGATTGCCATGGgtaagtggctccagtttgggcggtactttccaacctcgcagcttgaaata Alignment from Exonerate_protein2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATC-TTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaataactgaaaattcttgtctgtctgtgtttcagGCTTCATGTTCGCTGCATCTTCAATTCTAGTGATTTCCTCCCCCTACAGGCATCTATCC---TCTCCCCACCCACCTGCCCCTGTAACACAATCTGGAGCACTTAGGCTGCAATTGAAGATTGCCATGGgtaagtggctccagtttgggcggtactttccaacctcgcagcttgaaata Alignment from Exonerate_coding2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATC-TTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG ggtgcatgcaaaacagaataactgaaaattcttgtctgtctgtgtttcagGCTTCATGTTCGCTGCATCTTCAATTCTAGTGATTTCCTCCCCCTACAGGCATCTATCC---TCTCCCCACCCACCTGCCCCTGTAACACAATCTGGAGCACTTAGGCTGCAATTGAAGATTGCCATGGgtaagtggctccagtttgggcggtactttccaacctcgcagcttgaaata Alignment from GeneWise GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACG--------------------------------------------------- ggtgcatgcaaaacagaataactgaaaattcttgtctgtctgtgtttcagGCTTCATGTTCGCTGCATCTTCAATTCTAGTGATTTCCTCCCCCTACAGGCATCTATCCTCTCCCCAC--CCACCTGCCCCTGTAACACAATCTGGAGCACTTAGGCTGCAATTGAAGATTGCCATGGGTAAGTGGCTCCAGTTTGGGCGGTACTTTCCAACCTCGCAGCTTGAAATA #### Zp1_ID3066_6 --> 0 - 2 Original Alignment GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCT-GACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg taacatgctcccatcatcttccagaaatcctctctttcattgcatctcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTCGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACGCATGACAGCACCTTCcggtgcgcactaactaggcaggcctgagttgacaacatgcattgtactgtgg Alignment from CESAR GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCT-GACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg taacatgctcccatcatcttccagaaatcctctctttcattgcatctcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTCGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACGCATGACAGCACCTTCcggtgcgcactaactaggcaggcctgagttgacaacatgcattgtactgtgg Alignment from Spaln_aa2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCT-GACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG taacatgctcccatcatcttccagaaatcctctctttcattgcatctcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTcGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACGCATGACAGCACCTTCCGgtgcgcactaactaggcaggcctgagttgacaacatgcattgtactgtgg Alignment from Spaln_nt2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCT-GACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG taacatgctcccatcatcttccagaaatcctctctttcattgcatctcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTCGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACGCATGACAGCACCTTCCGgtgcgcactaactaggcaggcctgagttgacaacatgcattgtactgtgg Alignment from Pairagon GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCT-GACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG taacatgctcccatcatcttccagaaatcctctctttcattgcatctcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTCGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACGCATGACAGCACCTTCCGgtgcgcactaactaggcaggcctgagttgacaacatgcattgtactgtgg Alignment from Exonerate_protein2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCT-GACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG taacatgctcccatcatcttccagaaatcctctctttcattgcatctcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTCGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACGCATGACAGCACCTTCCGgtgcgcactaactaggcaggcctgagttgacaacatgcattgtactgtgg Alignment from Exonerate_coding2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCT-GACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG taacatgctcccatcatcttccagaaatcctctctttcattgcatctcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTCGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACGCATGACAGCACCTTCCGgtgcgcactaactaggcaggcctgagttgacaacatgcattgtactgtgg Alignment from GeneWise GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTG-TCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG taacatgctcccatcatcttccagaaatcctctctttcattgcatctcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTCGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACGCATGACAGCACCTTCCGgtgcgcactaactaggcaggcctgagttgacaacatgcattgtactgtgg ####