#### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCTTTGGCCTGGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGA-CATACCTTTGGTGGGGGCTATTGCTACAggtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCTTTGGCCTGGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATG-ACATACCTTTGGTGGGGGCTATTGCTACAggtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCTTTGGCCTGGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGACATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCTTTGGCCTGGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGA-CATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCTTTGGCCTGGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGA-CATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATG--ATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCTTTGGCCTGGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGAC---ATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCT-TATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCTTTGGCCTGGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGAC-ATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTG-CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCT-- tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCTTTGGCCTGGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGACATACCTTTGgtgggggctattgctacaggtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGT-GCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtaggTCCAGTGCCCGTCGCCAACATCACGCTGTCTGGGAAGAAGCGCAGAAAACTCT-GCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAggtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from CESAR gTCCAGTGCTCGT-GCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtaggTCCAGTGCCCGTCGCCAACATCACGCTGTCTGGGAAGAAGCGCAGAAAAC-TCTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAggtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Spaln_aa2Genome GTCCAGTGCTCGT-GCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTcGCCAACATCACGCTGTCTGGGAAGAAGCGCAGAAAACT-CTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Spaln_nt2Genome GTCCAGTGCTCGT-GCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTCGCCAACATCACGCTGTCTGGGAAGAAGCGCAGAAAACTC-TGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Pairagon GTCCAGTGCTCGT-GCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTCGCCAACATCACGCTGTCTGGGAAGAAGCGCAGAAAACTC-TGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTCGCCAACATCACGCTGTCTGGGAAGAAGCGCAGAAAACTCTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGC-CAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTCGCCAACATCACGCTGTCTGGGAAGAAGCGCAGAAAACT-CTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTCGCCAACATCACGCTGTCTGGGAAGAAGCGCAGAAAACTCTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg #### 2700081O15Rik_ID2154_4 --> 2 - 1 Original Alignment acGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCC-GCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagacGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATC-CAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGggtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from CESAR acGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCC-GCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagacGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGAT-CCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGggtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Spaln_aa2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Spaln_nt2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACT-CCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATC-CAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Pairagon ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACT-CCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATC-CAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Exonerate_protein2genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Exonerate_coding2genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from GeneWise ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGC-CAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATCA-CAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from CESAR GTCACAGATAATATCAGC-CAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGA-TCACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Spaln_aa2Genome GCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacaggtcacagataatatcagCCCAGAACACTATCCTGGAATATGTAATGATCAC-AGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Spaln_nt2Genome GTCACAGATAATATCAG-CCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATC-ACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Pairagon GTCACAGATAATATCAG-CCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATC-ACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATCACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Exonerate_coding2genome GTCACAGATAATATCAG---CCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATC--AGCCCAGAACACTATCCTGGAATATGTAATGAT-CACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from GeneWise GCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacaggtcacagataatatcagCCCAGAACACTATCCTGGAATATGTAATGATCAC-AGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGAT-CCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagagTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATT-TGAGGACAACCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCggtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGAT-CCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagagTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGAT-TTGAGGACAACCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCggtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGAT-CCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATcCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTT-GAGGACAACCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGAT-CCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATT-TGAGGACAACCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGAT-CCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATT-TGAGGACAACCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTTGAGGACAACCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTTGAGGACAACCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTTGAGGACAACCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTAT-GGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTT-AGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTAT-GGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTT-TAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTAT-GGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTT-AGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTAT-GGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTT-AGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_coding2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGG---TTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTAT--CGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTA-GAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCA-GGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from CESAR AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCC-AGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_aa2Genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATgGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCAG-GGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCA-GGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Pairagon AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCA-GGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_protein2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCC--ATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCAG---GGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_coding2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCC--ATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCAG---GGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from GeneWise ---------------------------AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagCCATTTTCTTTCTCCACCACCACCAGAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCAG-GGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAG-ATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAACATACGGGCTGCGGCCCAAGTCCG-CAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAG-ATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAACATACGGGCTGCGGCCCAAGTCC-GCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAG-ATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAACATACGGGCTGCGGCCCAAGTCC-GCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAG-ATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAACATACGGGCTGCGGCCCAAGTCC-GCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAG-ATTTGCCAAACATACGGACTACGGCCAAAGTCC--GGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGC---AACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAG-ATTTGCCAAACATACGGACTACGGCCAAAGTCC--GGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGC---AACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAG-CTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCT-CAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAG-CTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCC-CCTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAG-CTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGTTTGCTCGCCGGGCAG-CCCCCTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAG-CTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCC-TCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACG-CTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACCTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGC-CTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACG-CTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACCTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGC-CTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACCTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGC-TGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACCTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCC-TCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACG-CTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACCTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATG-CCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACCTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCT---GCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACA--CCTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCC-TCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACCTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg #### Actn3_ID704_6 --> 1 - 0 Original Alignment cTGGAAGGATGGCCTGGCCCTCTGT-GCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagcTGGAAGGATGGCCTGGCCCTTTGTCGCTCTCATCCACCGTCACCGGCCAGACCTCATTG-CTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from CESAR cTGGAAGGATGGCCTGGCCCTCTGT-GCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagcTGGAAGGATGGCCTGGCCCTTTGTCGCTCTCATCCACCGTCACCGGCCAGACCTCATT-GCTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Spaln_aa2Genome CTGGAAGGATGGCCTGGCCCTCTGT-GCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTcGCTCTCATCCACCGTCACCGGCCAGACCTCATTGC-TATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Spaln_nt2Genome CTGGAAGGATGGCCTGGCCCTCTGT-GCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTCGCTCTCATCCACCGTCACCGGCCAGACCTCATTG-CTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Pairagon CTGGAAGGATGGCCTGGCCCTCTGT-GCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTCGCTCTCATCCACCGTCACCGGCCAGACCTCATTG-CTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Exonerate_protein2genome CTGGAAGGATGGCCTGGCCCTCTGT-GCTCTCATCCACCGTCACCGGCCAGACCTCATT--GACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTCGCTCTCATCCACCGTCACCGGCCAGACCTCATTGC---TATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Exonerate_coding2genome CTGGAAGGATGGCCTGGCCCTCTGT-GCTCTCATCCACCGTCACCGGCCAGACCTCATT--GACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTCGCTCTCATCCACCGTCACCGGCCAGACCTCATTGC---TATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from GeneWise CTGGAAGGATGGCCTGGCCCTCTGT-GCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTCGCTCTCATCCACCGTCACCGGCCAGACCTCATTGC-TATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTC-TGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag cagactctttcccacttctcagctaacataccctgattacgatggtgcagagACCTCATCCAAAGAAGGCTTGCTCCTCCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCA-TGTACAGAACTTCCATACTaggtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTC-TGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag cagactctttcccacttctcagctaacataccctgattacgatggtgcagagACCTCATCCAAAGAAGGCTTGCTCCTCCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-ATGTACAGAACTTCCATACTaggtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTC-TGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCcTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAT-GTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTC-TGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-ATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCT-CTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-ATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTC-TGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC--AACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAT---GTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTC-TGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC--AACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAT---GTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagaaATTGTTGACGGGAACCTGAAAATGACCCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCA-TCAGGACATCTCTGTAGAAggtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagaaATTGTTGACGGGAACCTGAAAATGACCCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCA-TCAGGACATCTCTGTAGAAggtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCcCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCAT-CAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCC-TGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCAT-CAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGA-CCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCA-TCAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCC--ATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCAT---CAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGAC---CCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATG--ACCCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCAT-CAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATC-- ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATCAGGACATCTCTgtagaaggtaggttgaggaggagtacatagagagggccagctcagactctttcccac #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg ccgggctcccactcatgacctttgaccctgaacacaatctcctcctataggaGAGAGGCTGCCTAGGCCTGACAAACGGCAAGATGTGCTTTCACAAAATCGCCAATG-CAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAggtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg ccgggctcccactcatgacctttgaccctgaacacaatctcctcctataggaGAGAGGCTGCCTAGGCCTGACAAACGGCAAGATGTGCTTTCACAAAATCGCCAAT-GCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAggtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGATGTGCTTTCACAAAATCGCCAATGCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGAC-AAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGATGTGCTTTCACAAAATCGCCAATG-CAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGATGTGCTTTCACAAAATCGCCAATG-CAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGATGTGCTTTCACAAAATCGCCAATGCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGATGTGCTTTCACAAAATCGCCAATGCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGATGTGCTTTCACAAAATCGCCAATGCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt #### Acy3_ID249_3 --> 0 - 1 Original Alignment CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTAT-GAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCt ccctcaagaaagcccgggtcatgactggcttctctcctcctgcctttcagCGGCAGAACCCTGGGATGCCCTGCCGCCTCTTTCTGTATCGAGCCAGCTGGGATGGAGACCTTCAGCGTGGAATCTATAT-CAAGAATGGAATCtgtaagttgacaggtgggagaaaatgagcagaattgggggggtaacctcct Alignment from CESAR CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTAT-GAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCt ccctcaagaaagcccgggtcatgactggcttctctcctcctgcctttcagCGGCAGAACCCTGGGATGCCCTGCCGCCTCTTTCTGTATCGAGCCAGCTGGGATGGAGACCTTCAGCGTGGAATCTATAT-CAAGAATGGAATCtgtaagttgacaggtgggagaaaatgagcagaattgggggggtaacctcct Alignment from Spaln_aa2Genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTAT-GAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAG---AATGGAATCT ccctcaagaaagcccgggtcatgactggcttctctcctcctgcctttcagCGGCAGAACCCTGGGATGCCCTGCCGCCTCTTTCTGTATcGAGCCAGCTGGGATGGAGACCTTCAGCGTGGAATCTATATCAAGAATGGAATCTGTAAgttgacaggtgggagaaaatgagcagaattgggggggtaacctcct Alignment from Spaln_nt2Genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTAT-GAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT ccctcaagaaagcccgggtcatgactggcttctctcctcctgcctttcagCGGCAGAACCCTGGGATGCCCTGCCGCCTCTTTCTGTATCGAGCCAGCTGGGATGGAGACCTTCAGCGTGGAATCTATAT-CAAGAATGGAATCTgtaagttgacaggtgggagaaaatgagcagaattgggggggtaacctcct Alignment from Pairagon CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTAT-GAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT ccctcaagaaagcccgggtcatgactggcttctctcctcctgcctttcagCGGCAGAACCCTGGGATGCCCTGCCGCCTCTTTCTGTATCGAGCCAGCTGGGATGGAGACCTTCAGCGTGGAATCTATAT-CAAGAATGGAATCTgtaagttgacaggtgggagaaaatgagcagaattgggggggtaacctcct Alignment from Exonerate_protein2genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTAT-GAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATC ccctcaagaaagcccgggtcatgactggcttctctcctcctgcctttcagCGGCAGAACCCTGGGATGCCCTGCCGCCTCTTTCTGTATCGAGCCAGCTGGGATGGAGACCTTCAGCGTGGAATCTATATCAAGAATGGAATCTgtaagttgacaggtgggagaaaatgagcagaattgggggggtaacctcct Alignment from Exonerate_coding2genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGA---GCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT ccctcaagaaagcccgggtcatgactggcttctctcctcctgcctttcagCGGCAGAACCCTGGGATGCCCTGCCGCCTCTTTCTGTAT--CGAGCCAGCTGGGATGGAGACCTTCAGCGTGGAATCTATATC-AAGAATGGAATCTgtaagttgacaggtgggagaaaatgagcagaattgggggggtaacctcct Alignment from GeneWise CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTAT-GAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAG---AATGGAATCT ccctcaagaaagcccgggtcatgactggcttctctcctcctgcctttcagCGGCAGAACCCTGGGATGCCCTGCCGCCTCTTTCTGTATCGAGCCAGCTGGGATGGAGACCTTCAGCGTGGAATCTATATCAAGAATGGAATCTGTAAgttgacaggtgggagaaaatgagcagaattgggggggtaacctcct #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATG-GGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagacTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGCGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCT-CTTGTTCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATG-GGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagacTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGCGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTC-TCTTGTTCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATG-GGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGcGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTC-TTGTTCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATG-GGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGCGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCT-CTTGTTCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATG-GGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGCGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCT-CTTGTTCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATG-GGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTC--TACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGCGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTC---TTGTTCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATG-GGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTC--TACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGCGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTC---TTGTTCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAG-ATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGCGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTC-TTGTTCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaatgatccagagtccaggttcctggtcccgccccccgcaggGCTCAGGAGGTACAAAGAAAGTCCTTTCTTTCATTCTCTGGATTGGCAGA-GGTCTTCTTACAGAAGgtaagtatctaaccctccagggtgagatgtgaatcccctctgctgcccct Alignment from CESAR gGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaatgatccagagtccaggttcctggtcccgccccccgcaggGCTCAGGAGGTACAAAGAAAGTCCTTTCTTTCATTCTCTGGATTGGCAG-AGGTCTTCTTACAGAAGgtaagtatctaaccctccagggtgagatgtgaatcccctctgctgcccct Alignment from Spaln_aa2Genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGAT actcaacttgaatgatccagagtccaggttcctggtcccgccccccgcagGGCTCAGGAGGTACAAAGAAAGTCCTTTCTTTCATTCTCTGGATTGGCAGAGgtcttcttacagaaggtaagtatctaaccctccagggtgagatgtgaatcccctctgctgcccct Alignment from Spaln_nt2Genome GGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaatgatccagagtccaggttcctggtcccgccccccgcagGGCTCAGGAGGTACAAAGAAAGTCCTTTCTTTCATTCTCTGGATTGGCAGA-GGTCTTCTTACAGAAGgtaagtatctaaccctccagggtgagatgtgaatcccctctgctgcccct Alignment from Pairagon GGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaatgatccagagtccaggttcctggtcccgccccccgcagGGCTCAGGAGGTACAAAGAAAGTCCTTTCTTTCATTCTCTGGATTGGCAGA-GGTCTTCTTACAGAAGgtaagtatctaaccctccagggtgagatgtgaatcccctctgctgcccct Alignment from Exonerate_protein2genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAG--ATGGTCTTCTTACAGAAG actcaacttgaatgatccagagtccaggttcctggtcccgccccccgcagGGCTCAGGAGGTACAAAGAAAGTCCTTTCTTTCATTCTCTGGATTGGCAGAG---GTCTTCTTACAGAAGgtaagtatctaaccctccagggtgagatgtgaatcccctctgctgcccct Alignment from Exonerate_coding2genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAG--ATGGTCTTCTTACAGAAG actcaacttgaatgatccagagtccaggttcctggtcccgccccccgcagGGCTCAGGAGGTACAAAGAAAGTCCTTTCTTTCATTCTCTGGATTGGCAGAG---GTCTTCTTACAGAAGgtaagtatctaaccctccagggtgagatgtgaatcccctctgctgcccct Alignment from GeneWise GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGAT actcaacttgaatgatccagagtccaggttcctggtcccgccccccgcagGGCTCAGGAGGTACAAAGAAAGTCCTTTCTTTCATTCTCTGGATTGGCAGAGgtcttcttacagaaggtaagtatctaaccctccagggtgagatgtgaatcccctctgctgcccct #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACCTCCGATCCCTGCTGGAAGGTTTGTTGCAGA-GGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTgggtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACCTCCGATCCCTGCTGGAAGGTTTGTTGCAGA-GGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTgggtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACCTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCG---TGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACCTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGG-ACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGG---GCCGTGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACCTCCGATCCCTGCTGGAAGGTTTGTTGCAGA-GGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACCTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACCTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACCTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAACATGGCCAT-GTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATCGTGAGAATCTCAGACCTGAGCCTGGCAT-TGACTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaagcgcctagctattccctccaaccccaaccttcttcctctttgctct Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACATGGCCAT-GTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATCGTGAGAATCTCAGACCTGAGCCTGGCA-TTGACTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaagcgcctagctattccctccaaccccaaccttcttcctctttgcacc Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATCGTGAGAATCTCAGACCTGAGCCTGGCATTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgctct Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCAT-GTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATCGTGAGAATCTCAGACCTGAGCCTGGCAT-TGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgctct Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAACATGGCCAT-GTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATCGTGAGAATCTCAGACCTGAGCCTGGCAT-TGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgctct Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATCGTGAGAATCTCAGACCTGAGCCTGGCATTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgctct Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATCGTGAGAATCTCAGACCTGAGCCTGGCATTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgctct Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATCGTGAGAATCTCAGACCTGAGCCTGGCATTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgctct #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAAT-GCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ggaaagaaagagccttatataagattcaattttttttctttcctctgtagCCCTTTTCAAAAAATCGCTACGGAGCATGTCCAGGCCCACCTTGTGA-GAAGCAGGTGCCTCCAGATCTCTTCCAGgtaaaggctgggtgcttctcctcatggccccattctgcccagatctccca Alignment from CESAR CCCTTTTCAAAGAAT-GCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ggaaagaaagagccttatataagattcaattttttttctttcctctgtagCCCTTTTCAAAAAATCGCTACGGAGCATGTCCAGGCCCACCTTGTGA-GAAGCAGGTGCCTCCAGATCTCTTCCAGgtaaaggctgggtgcttctcctcatggccccattctgcccagatctccca Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ggaaagaaagagccttatataagattcaattttttttctttcctctgtagCCCTTTTCAAAAAATCGCTACGGAGCATGTCCAGGCCCACCTTGTGAGAAGCAGGTGCCTCCAGATCTCTTCCAGgtaaaggctgggtgcttctcctcatggccccattctgcccagatctccca Alignment from Spaln_nt2Genome CCCTTTTCAAAGAAT-GCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ggaaagaaagagccttatataagattcaattttttttctttcctctgtagCCCTTTTCAAAAAATCGCTACGGAGCATGTCCAGGCCCACCTTGTG-AGAAGCAGGTGCCTCCAGATCTCTTCCAGgtaaaggctgggtgcttctcctcatggccccattctgcccagatctccca Alignment from Pairagon CCCTTTTCAAAGAAT-GCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ggaaagaaagagccttatataagattcaattttttttctttcctctgtagCCCTTTTCAAAAAATCGCTACGGAGCATGTCCAGGCCCACCTTGTG-AGAAGCAGGTGCCTCCAGATCTCTTCCAGgtaaaggctgggtgcttctcctcatggccccattctgcccagatctccca Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ggaaagaaagagccttatataagattcaattttttttctttcctctgtagCCCTTTTCAAAAAATCGCTACGGAGCATGTCCAGGCCCACCTTGTGAGAAGCAGGTGCCTCCAGATCTCTTCCAGgtaaaggctgggtgcttctcctcatggccccattctgcccagatctccca Alignment from Exonerate_coding2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ggaaagaaagagccttatataagattcaattttttttctttcctctgtagCCCTTTTCAAAAAATCGCTACGGAGCATGTCCAGGCCCACCTTGTGAGAAGCAGGTGCCTCCAGATCTCTTCCAGgtaaaggctgggtgcttctcctcatggccccattctgcccagatctccca Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ggaaagaaagagccttatataagattcaattttttttctttcctctgtagCCCTTTTCAAAAAATCGCTACGGAGCATGTCCAGGCCCACCTTGTGAGAAGCAGGTGCCTCCAGATCTCTTCCAGgtaaaggctgggtgcttctcctcatggccccattctgcccagatctccca #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATAT-GAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATCGAGAAGCTGGAGACAGAGGAGGAACGTGTGG-CCGCAGCCGAGAGATCTTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from CESAR ATCAAGAAATAT-GAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATCGAGAAGCTGGAGACAGAGGAGGAACGTGTGG-CCGCAGCCGAGAGATCTTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Spaln_aa2Genome GAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagatcaagAAATATCGAGAAGCTGGAGACAGAGGAGGAACGTGTGGC-CGCAGCCGAGAGATCTTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Spaln_nt2Genome ATCAAGAAATAT-GAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATCGAGAAGCTGGAGACAGAGGAGGAACGTGTGG-CCGCAGCCGAGAGATCTTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Pairagon ATCAAGAAATAT-GAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATCGAGAAGCTGGAGACAGAGGAGGAACGTGTGG-CCGCAGCCGAGAGATCTTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATCGAGAAGCTGGAGACAGAGGAGGAACGTGTGGCCGCAGCCGAGAGATCTTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATCGAGAAGCTGGAGACAGAGGAGGAACGTGTGGCCGCAGCCGAGAGATCTTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from GeneWise GAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagatcaagAAATATCGAGAAGCTGGAGACAGAGGAGGAACGTGTGGC-CGCAGCCGAGAGATCTTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTC-AACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacatagtaatttgacccacacagttgatattttcacagCCACAGCCCAAAGCTGCCACCCCAAACCCCCCACCAGACTCCACGCCAGTCCAACTCTGCATCTGTGCTCAAGAACAGGCCACTTTCTGTCATGG-CACAGGTAAAGGCACTGTCCTGCAGAAAGCCAAGgtgcgtggcctctctccaattgtagatgtagccttgtggcctttgcacta Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTC-AACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacatagtaatttgacccacacagttgatattttcacagCCACAGCCCAAAGCTGCCACCCCAAACCCCCCACCAGACTCCACGCCAGTCCAACTCTGCATCTGTGCTCAAGAACAGGCCACTTTCTGTCATG-GCACAGGTAAAGGCACTGTCCTGCAGAAAGCCAAGgtgcgtggcctctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacatagtaatttgacccacacagttgatattttcacagCCACAGCCCAAAGCTGCCACCCCAAACCCCCCACCAGACTCCACGCCAGTCCAACTCTGCATCTGTGCTCAAGAACAGGCCACTTTCTGTCATGGCACAGGTAAAGGCACTGTCCTGCAGAAAGCCAAGgtgcgtggcctctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGT-CAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacatagtaatttgacccacacagttgatattttcacagCCACAGCCCAAAGCTGCCACCCCAAACCCCCCACCAGACTCCACGCCAGTCCAACTCTGCATCTGTGCTCAAGAACAGGCCACTTTCTGTCATGG-CACAGGTAAAGGCACTGTCCTGCAGAAAGCCAAGgtgcgtggcctctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGT-CAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacatagtaatttgacccacacagttgatattttcacagCCACAGCCCAAAGCTGCCACCCCAAACCCCCCACCAGACTCCACGCCAGTCCAACTCTGCATCTGTGCTCAAGAACAGGCCACTTTCTGTCATGG-CACAGGTAAAGGCACTGTCCTGCAGAAAGCCAAGgtgcgtggcctctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTC-AACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATG--GTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacatagtaatttgacccacacagttgatattttcacagCCACAGCCCAAAGCTGCCACCCCAAACCCCCCACCAGACTCCACGCCAGTCCAACTCTGCATCTGTGCTCAAGAACAGGCCACTTTCTGTCATGGC---ACAGGTAAAGGCACTGTCCTGCAGAAAGCCAAGgtgcgtggcctctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTC-AACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAGG gtggtattatatacatagtaatttgacccacacagttgatattttcacagCCACAGCCCAAAGCTGCCACCCCAAACCCCCCACCAGACTCCACGCCAGTCCAACTCTGCATCTGTGCTCAAGAACAGGCCACTTTCTGTCATG-GCACAGGTAAAGGCACTGTCCTGCAGAAAGCCAAGGtgcgtggcctctctccaattgtagatgtagccttgtggcctttgcacta Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGAAAGGAGCCAGT gtggtattatatacatagtaatttgacccacacagttgatattttcacagCCACAGCCCAAAGCTGCCACCCCAAACCCCCCACCAGACTCCACGCCAGTCCAACTCTGCATCTGTGCTCAAGAACAGGCCACTTTCTGTCATGGCACAGGTAAAGGCACTGTCCTGCAGAAAGCCAAGGTG---------CGTGGCCTCTCTccaattgtagatgtagccttgtggcc #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTCGACTGGATCCAGTTGGACCTGCAGATCA-ACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTCGACTGGATCCAGTTGGACCTGCAGATC-AACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTcGACTGGATCCAGTTGGACCTGCAGATCAA-CCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTCGACTGGATCCAGTTGGACCTGCAGATCA-ACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTCGACTGGATCCAGTTGGACCTGCAGATCA-ACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTCGACTGGATCCAGTTGGACCTGCAGATCAACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTCGACTGGATCCAGTTGGACCTGCAGATC-AACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTCGACTGGATCCAGTTGGACCTGCAGATCAACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATC-CGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg cgttcccatagtgaggccccacagagccgaaaccttctcttgttttttagGCTACACAGCTGGACTCAGCCTTCATCCAGGAAGGAGCCCTTCGGTCTGGTGCTTATCATTGTGCCTTGGA-TTATCCCATTAACCTGACACTTGTGCCGCTGGTGGGGGCCATAGCCGCAggtgggtagtccttcaccttccaacagccctccacactgggctacctagga Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATC-CGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg cgttcccatagtgaggccccacagagccgaaaccttctcttgttttttagGCTACACAGCTGGACTCAGCCTTCATCCAGGAAGGAGCCCTTCGGTCTGGTGCTTATCATTGTGCCTT-GGATTATCCCATTAACCTGACACTTGTGCCGCTGGTGGGGGCCATAGCCGCAggtgggtagtccttcaccttccaacagccctccacactgggctacctagga Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATC-CGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cgttcccatagtgaggccccacagagccgaaaccttctcttgttttttagGCTACACAGCTGGACTCAGCCTTCATCcAGGAAGGAGCCCTTCGGTCTGGTGCTTATCATTGTGCCTTGGAT-TATCCCATTAACCTGACACTTGTGCCGCTGGTGGGGGCCATAGCCGCAGgtgggtagtccttcaccttccaacagccctccacactgggctacctagga Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCC-GGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cgttcccatagtgaggccccacagagccgaaaccttctcttgttttttagGCTACACAGCTGGACTCAGCCTTCATCCAGGAAGGAGCCCTTCGGTCTGGTGCTTATCATTGTGCCT-TGGATTATCCCATTAACCTGACACTTGTGCCGCTGGTGGGGGCCATAGCCGCAGgtgggtagtccttcaccttccaacagccctccacactgggctacctagga Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCC-GGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cgttcccatagtgaggccccacagagccgaaaccttctcttgttttttagGCTACACAGCTGGACTCAGCCTTCATCCAGGAAGGAGCCCTTCGGTCTGGTGCTTATCATTGTGCCTTGG-ATTATCCCATTAACCTGACACTTGTGCCGCTGGTGGGGGCCATAGCCGCAGgtgggtagtccttcaccttccaacagccctccacactgggctacctagga Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATC-CGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGG--AATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cgttcccatagtgaggccccacagagccgaaaccttctcttgttttttagGCTACACAGCTGGACTCAGCCTTCATCCAGGAAGGAGCCCTTCGGTCTGGTGCTTATCATTGTGCCTTGGAT---TATCCCATTAACCTGACACTTGTGCCGCTGGTGGGGGCCATAGCCGCAGgtgggtagtccttcaccttccaacagccctccacactgggctacctagga Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATC-CGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cgttcccatagtgaggccccacagagccgaaaccttctcttgttttttagGCTACACAGCTGGACTCAGCCTTCATCCAGGAAGGAGCCCTTCGGTCTGGTGCTTATCATTGTGCCTTGG-ATTATCCCATTAACCTGACACTTGTGCCGCTGGTGGGGGCCATAGCCGCAGgtgggtagtccttcaccttccaacagccctccacactgggctacctagga Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTC-ATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cgttcccatagtgaggccccacagagccgaaaccttctcttgttttttagGCTACACAGCTGGACTCAGCCTTCATCCAGGAAGGAGCCCTTCGGTCTGGTGCTTATCATTGTGCCTTGGAT-TATCCCATTAACCTGACACTTGTGCCGCTGGTGGGGGCCATAGCCGCAGgtgggtagtccttcaccttccaacagccctccacactgggctacctagga #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ttagatgggttcttactcatctgacactcatgccccacccctcttctcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGA-GATCATACCTTTAGTGGGGGCCATTGCTGCAggttggtggggttctgagcccccctattctgatgagacttcccaaagaagg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ttagatgggttcttactcatctgacactcatgccccacccctcttctcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTG-AGATCATACCTTTAGTGGGGGCCATTGCTGCAggttggtggggttctgagcccccctattctgatgagacttcccaaagaagg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttagatgggttcttactcatctgacactcatgccccacccctcttctcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGAGATCATACCTTTAGTGGGGGCCATTGCTGCAGgttggtggggttctgagcccccctattctgatgagacttcccaaagaagg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttagatgggttcttactcatctgacactcatgccccacccctcttctcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGA-GATCATACCTTTAGTGGGGGCCATTGCTGCAGgttggtggggttctgagcccccctattctgatgagacttcccaaagaagg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttagatgggttcttactcatctgacactcatgccccacccctcttctcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGA-GATCATACCTTTAGTGGGGGCCATTGCTGCAGgttggtggggttctgagcccccctattctgatgagacttcccaaagaagg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttagatgggttcttactcatctgacactcatgccccacccctcttctcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGAGATCATACCTTTAGTGGGGGCCATTGCTGCAGgttggtggggttctgagcccccctattctgatgagacttcccaaagaagg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttagatgggttcttactcatctgacactcatgccccacccctcttctcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGAGATCATACCTTTAGTGGGGGCCATTGCTGCAGgttggtggggttctgagcccccctattctgatgagacttcccaaagaagg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ttagatgggttcttactcatctgacactcatgccccacccctcttctcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGAGATCATACCTTTAGTGGGGGCCATTGCTGCAGgttggtggggttctgagcccccctattctgatgagacttcccaaagaagg #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGAGGA-CCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGAGGACCCCGAGGAGACCAGGCAGCTGCTGGAAC-CAAATTTGACTATATCTTCTTCACAggtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGA-CCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGAGGACCCCGAGGAGACCAGGCAGCTGCTGGAA-CCAAATTTGACTATATCTTCTTCACAggtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGAGGACCCCGAGGAGACCAGGCAGCTGCTGGAACCAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGA-CCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGAGGACCCCGAGGAGACCAGGCAGCTGCTGGAAC-CAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGAGGA-CCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGAGGACCCCGAGGAGACCAGGCAGCTGCTGGAAC-CAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGAGGACCCCGAGGAGACCAGGCAGCTGCTGGAACCAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGAGGACCCCGAGGAGACCAGGCAGCTGCTGGAACCAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGAGGACCCCGAGGAGACCAGGCAGCTGCTGGAACCAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGAC-CCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGG-GAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAggtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from CESAR CACGACATTGAGCAGGAGGACCCC-CAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCT-TGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAggtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGA-CCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTT-GGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Pairagon CACGACATTGAGCAGGAGGA-CCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTT-GGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Exonerate_coding2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTG-AGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGCAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCT-GCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTG-AGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGCAGGCTCAACCGCTACAAAATCATCAAACTGCTGC-TCTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGCAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTG-AGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGCAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCT-GCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTG-AGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGCAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTC-TGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGCAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGCAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGCAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTA-CCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTC-CAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from CESAR GTTCCCTTGCTGGTA-CCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGT-CCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTA-CCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTAcCCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCC-AGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTA-CCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTC-CAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Pairagon GTTCCCTTGCTGGTA-CCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTC-CAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTAC-CAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTC-CAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGG-CTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGt atttatttcgtcatggggcatattttctctttattaaaatggtatcacagcAATGAAGCCAATTCTAAATGGCCTGGACGCACACTACGACCCCATGGCCAACATCCACACCT-CTCCTCCTGTCTGtgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from CESAR cAACGAAGCCAATTCTAAATGG-CTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGt atttatttcgtcatggggcatattttctctttattaaaatggtatcacagcAATGAAGCCAATTCTAAATGGCCTGGACGCACACTACGACCCCATGGCCAACATCCACA-CCTCTCCTCCTGTCTGtgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGG-CTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatcacagCAATGAAGCCAATTCTAAATGGcCTGGACGCACACTACGACCCCATGGCCAACATCCACACC---TCTCCTCCTGTCTgtgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Spaln_nt2Genome CAACGAAGCCAATTCT-AAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatcacagCAATGAAGCCAATTCTAAATGGCCTGGACGCACACTACGACCCCATGGCCAACATCCACACC-TCTCCTCCTGTCTGTgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Pairagon CAACGAAGCCAATTCTAAATGG-CTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatcacagCAATGAAGCCAATTCTAAATGGCCTGGACGCACACTACGACCCCATGGCCAACATCCACACC-TCTCCTCCTGTCTGTgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGG-CTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTG atttatttcgtcatggggcatattttctctttattaaaatggtatcacagCAATGAAGCCAATTCTAAATGGCCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTCTCCTCCTGTctgtgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Exonerate_coding2genome GAGAGCAACGAAGCCAATTCTAAATGG-CTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTG atttatttcgtcatggggcatattttctctttattaaaatggtatCACAGCAATGAAGCCAATTCTAAATGGCCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTCTCCTCCTGTctgtgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from GeneWise atttatttcgtcatggggcatattttctctttattaaaatggtatcacagcaatgaagccaattctaaatggcctggacgcacactacgaccccatggccaacatccacacctctcctcctgtctgtgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAA-CCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagagGGCCAGCTGTCAGAGGAAGAGAAACCCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGC-AGAGCCAGAGGCTAGTGATggtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAA-CCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagagGGCCAGCTGTCAGAGGAAGAGAAACCCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGC-AGAGCCAGAGGCTAGTGATggtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAAGAGAAACCCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAA-CCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAAGAGAAACCCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCA-GAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAA-CCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAAGAGAAACCCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGC-AGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAAGAGAAACCCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAAGAGAAACCCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAAGAGAAACCCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGAC-TGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACCTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAT-CTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACtggtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGAC-TGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACCTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAT-CTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACtggtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACCTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGA-CTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACCTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAT-CTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGA-CTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACCTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAT-CTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGAC-TGGTGTGTTGTCATCGGCCTGATTCTCAGAGAA--TCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACCTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATC---TCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGAC-TGGTGTGTTGTCATCGGCCTGATTCTCAGAGAA--TCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACCTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATC---TCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACCTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTG-GAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacaggtGGTGGGAAGGTGGATTTTGAAGATTTTGTGCGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACA-GATTGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTG-GAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacaggtGGTGGGAAGGTGGATTTTGAAGATTTTGTGCGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGAC-AGATTGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGCGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACAGATTGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTG-GAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGCGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACA-GATTGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTG-GAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGCGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACA-GATTGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGCGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACAGATTGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGCGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACAGATTGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGCGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACAGATTGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGAT-GGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATCGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAG-TCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from CESAR TTCGACACCAACGGTGAT-GGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATCGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAA-GTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Spaln_aa2Genome TTCGACACCAACGGTGAT-GGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATcGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Spaln_nt2Genome TTCGACACCAACGGTGAT-GGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATCGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTC-AAAGTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Pairagon TTCGACACCAACGGTGAT-GGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATCGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAG-TCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATCGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Exonerate_coding2genome TTCGACACCAACGGTGAT-GGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATCGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTC-AAAGTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATCGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGCAAGCTGGGTCTGGTGGAGTTCAACATCCTAT-GAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from CESAR CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGCAAGCTGGGTCTGGTGGAGTTCAACATCCTA-TGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Spaln_aa2Genome CGAGATGGCAAC-GGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATgGGCAAGCTGGGTCTGGTGGAGTTCAACATCCTATG-AACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Spaln_nt2Genome CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGCAAGCTGGGTCTGGTGGAGTTCAACATCCTAT-GAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Pairagon CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGCAAGCTGGGTCTGGTGGAGTTCAACATCCTAT-GAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGCAAGCTGGGTCTGGTGGAGTTCAACATCCTATGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGCAAGCTGGGTCTGGTGGAGTTCAACATCCTATGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGCAAGCTGGGTCTGGTGGAGTTCAACATCCTATGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCACAACCCCCAGTTCATCGTGGATGGAGCCACCCGGA-AGACATCTGCCAGGGAGCACTGggtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from CESAR GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCACAACCCCCAGTTCATCGTGGATGGAGCCACCCGG-AAGACATCTGCCAGGGAGCACTGggtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Spaln_aa2Genome GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAcAACCCCCAGTTCATCGTGGATGGAGCCACCCGGAA-GACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Spaln_nt2Genome GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCACAACCCCCAGTTCATCGTGGATGGAGCCACCCGGA-AGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Pairagon GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCACAACCCCCAGTTCATCGTGGATGGAGCCACCCGGA-AGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCACAACCCCCAGTTCATCGTGGATGGAGCCACCCGGAAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Exonerate_coding2genome GAACTGATGTCAAA---CCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCA--CAACCCCCAGTTCATCGTGGATGGAGCCACCCGGAA-GACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCACAACCCCCAGTTCATCGTGGATGGAGCCACCCGGAAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCG-CTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCCTGGCTCAGTGTGGCCTGGAAGACGGGGCACAGGTGG-GCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTggtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCG-CTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCCTGGCTCAGTGTGGCCTGGAAGACGGGGCACAGGTG-GGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTggtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCCTGGCTCAGTGTGGCCTGGAAGACGGGGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCG-CTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCCTGGCTCAGTGTGGCCTGGAAGACGGGGCACAGGTGG-GCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCG-CTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCCTGGCTCAGTGTGGCCTGGAAGACGGGGCACAGGTGG-GCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCCTGGCTCAGTGTGGCCTGGAAGACGGGGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCT-GGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGAGT---ACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCCTGGCTCAGTGTGGCCTGGAAGACGGGGCACAGGTGGG-CTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCCTGGCTCAGTGTGGCCTGGAAGACGGGGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg #### Carns1_ID386_6 --> 2 - 0 Original Alignment gcGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG agacagacctctataccttatctgggctgttctcactgtgtgtgttccaggtGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCATATCTGTGCAGTGGTGTGTCAGATTC-GGGTGATAGGCCCCTACTGAGTAAGgtaaggatggctctggtctaggatgcagtcctgtccaccccagctctgcc Alignment from CESAR gcGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG agacagacctctataccttatctgggctgttctcactgtgtgtgttccaggtGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCATATCTGTGCAGTGGTGTGTCAGATT-CGGGTGATAGGCCCCTACTGAGTAAGgtaaggatggctctggtctaggatgcagtcctgtccaccccagctctgcc Alignment from Spaln_aa2Genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG agacagacctctataccttatctgggctgttctcactgtgtgtgttccagGTGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCATATCTGTGCAGTGGTGTGTCAGATTCGGGTGATAGGCCCCTACTGAGTAAGgtaaggatggctctggtctaggatgcagtcctgtccaccccagctctgcc Alignment from Spaln_nt2Genome GCGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG agacagacctctataccttatctgggctgttctcactgtgtgtgttccagGTGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCATATCTGTGCAGTGGTGTGTCAGATTC-GGGTGATAGGCCCCTACTGAGTAAGgtaaggatggctctggtctaggatgcagtcctgtccaccccagctctgcc Alignment from Pairagon GCGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG agacagacctctataccttatctgggctgttctcactgtgtgtgttccagGTGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCATATCTGTGCAGTGGTGTGTCAGATTC-GGGTGATAGGCCCCTACTGAGTAAGgtaaggatggctctggtctaggatgcagtcctgtccaccccagctctgcc Alignment from Exonerate_protein2genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG agacagacctctataccttatctgggctgttctcactgtgtgtgttccagGTGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCATATCTGTGCAGTGGTGTGTCAGATTCGGGTGATAGGCCCCTACTGAGTAAGgtaaggatggctctggtctaggatgcagtcctgtccaccccagctctgcc Alignment from Exonerate_coding2genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGT-GCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG agacagacctctataccttatctgggctgttctcactgtgtgtgttccagGTGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCATATCTGTGCAGTGGTGTGTCAGATTCG-GGTGATAGGCCCCTACTGAGTAAGgtaaggatggctctggtctaggatgcagtcctgtccaccccagctctgcc Alignment from GeneWise GCGGTCCTGCACCTGGCCCTGAGCTGGCT---GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG agacagacctctataccttatctgggctgttctcactgtgtgtgttccagGTGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCATATCTGTGCAGTGGTGTGTCAGAT---TCGGGTGATAGGCCCCTACTGAGTAAGgtaaggatggctctggtctaggatgcagtcctgtccaccccagctctgcc #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTG-GAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGCGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAA-GTGCCCACCTGTCCGGCTGCCCTTACCAggtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTG-GAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGCGAGGAGGAGGAGAGTGTCCTTGTGGAGGCA-AGTGCCCACCTGTCCGGCTGCCCTTACCAggtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGCGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAAGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTG-GAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGCGAGGAGGAGGAGAGTGTCCTTGTGGAGG-CAAGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTG-GAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGCGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAA-GTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGCGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAAGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGA-GGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGCGAGGAGGAGGAGAGTGTCCTTGTGGAGGC-AAGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGCGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAAGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGG-AAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGCAAGGAGGGCCAGGAAACACTTGTGAAAGAGG-AGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGG-AAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGCAAGGAGGGCCAGGAAACACTTGTGAAAGAGG-AGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGCAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGG-AAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGCAAGGAGGGCCAGGAAACACTTGTGAAAGAGG-AGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGG-AAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGCAAGGAGGGCCAGGAAACACTTGTGAAAGAGG-AGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGCAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGCAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGCAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATT-CTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg acccttggacaaggacccttggttaacatttaacatgttgtgcactgcaggcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGG-TGGGGTCCAGAGCCCTggtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATT-CTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg acccttggacaaggacccttggttaacatttaacatgttgtgcactgcaggcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGG-AGGTGGGGTCCAGAGCCCTggtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTC-TGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGG-TGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATT-CTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGA-GGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATT-CTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAG-GTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCA-TATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagacTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACTCCAGATAAACTCGCTCTCACTACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAG-CTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCA-TATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagacTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACTCCAGATAAACTCGCTCTCACTACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAA-GCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCA-TATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACTCCAGATAAACTCGCTCTCAcTACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGC-TTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCA-TATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACTCCAGATAAACTCGCTCTCACTACTCATTCTACAACCACAGCCTGTTCCGCATTCTC-AAAGCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCA-TATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACTCCAGATAAACTCGCTCTCACTACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAG-CTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCA-TATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAA--GTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACTCCAGATAAACTCGCTCTCACTACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGC---TTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCA-TATTCATTCTACAACCACAGCCTGTTCCGGATTCTC-AAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACTCCAGATAAACTCGCTCTCACTACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGCTT--CAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTC-TCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACTCCAGATAAACTCGCTCTCACTACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGC-TTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCC-GGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ctcacttgcatcgccactaattcagactttgtataattttgctcccttagcATCCTGACCAGCGTCCATGAAGTGGCTCGGGACTCTGAGTGGATCATTACCATCAATCACGGCCA-CCTCACCCTCATGTTTACCTGCCTCtgtgagctgtacaacagagattaggcggctgctagcgtaggacagctggtg Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCC-GGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ctcacttgcatcgccactaattcagactttgtataattttgctcccttagcATCCTGACCAGCGTCCATGAAGTGGCTCGGGACTCTGAGTGGATCATTACCATCAATCACGGCC-ACCTCACCCTCATGTTTACCTGCCTCtgtgagctgtacaacagagattaggcggctgctagcgtaggacagctggtg Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCC-GGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctcacttgcatcgccactaattcagactttgtataattttgctcccttagCATCCTGACCAGCGTCCATGAAGTGGCTcGGGACTCTGAGTGGATCATTACCATCAATCACGGCCAC-CTCACCCTCATGTTTACCTGCCTCTgtgagctgtacaacagagattaggcggctgctagcgtaggacagctggtg Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGC-CGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctcacttgcatcgccactaattcagactttgtataattttgctcccttagCATCCTGACCAGCGTCCATGAAGTGGCTCGGGACTCTGAGTGGATCATTACCATCAATCACGGCCAC-CTCACCCTCATGTTTACCTGCCTCTgtgagctgtacaacagagattaggcggctgctagcgtaggacagctggtg Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGC-CGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctcacttgcatcgccactaattcagactttgtataattttgctcccttagCATCCTGACCAGCGTCCATGAAGTGGCTCGGGACTCTGAGTGGATCATTACCATCAATCACGGCCA-CCTCACCCTCATGTTTACCTGCCTCTgtgagctgtacaacagagattaggcggctgctagcgtaggacagctggtg Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCC-GGGACTCTGAGTGGATCTTTACCATCCATCACGGCC--ATCCTCACCCTCATGTTTACCTGCCTCT ctcacttgcatcgccactaattcagactttgtataattttgctcccttagCATCCTGACCAGCGTCCATGAAGTGGCTCGGGACTCTGAGTGGATCATTACCATCAATCACGGCCAC---CTCACCCTCATGTTTACCTGCCTCTgtgagctgtacaacagagattaggcggctgctagcgtaggacagctggtg Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGC---CGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctcacttgcatcgccactaattcagactttgtataattttgctcccttagCATCCTGACCAGCGTCCATGAAGTG--GCTCGGGACTCTGAGTGGATCATTACCATCAATCACGGCCAC-CTCACCCTCATGTTTACCTGCCTCTgtgagctgtacaacagagattaggcggctgctagcgtaggacagctggtg Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctcacttgcatcgccactaattcagactttgtataattttgctcccttagCATCCTGACCAGCGTCCATGAAGTGGCTCGGGACTCTGAGTGGATCATTACCATCAATCACGGCCACCTCACCCTCATGTTTACCTGCCTCTgtgagctgtacaacagagattaggcggctgctagcgtaggacagctggtg #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTC-ACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCC-TATCTACATAGACAACAGGGCCCAAggtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTC-ACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCC-TATCTACATAGACAACAGGGCCCAAggtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTC-ACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCcACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCT-ATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTT-CACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCT-ATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTT-CACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCT-ATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTC-ACCCTGTTCACCATGCTCACCCTGGACGACTGGTCC--CTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCT---ATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTT---CACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACC--ACACTCTTCCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCT-ATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTC-ACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCT-ATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGT-GGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagggTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTCGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCG-GGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAggtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGT-GGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagggTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTCGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCG-GGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAggtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTCGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGT-GGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTCGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCC-CGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGT-GGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTCGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCC-GGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTCGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTCGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTCGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGC-ACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg tcctcgccttctcttcttccttataccttctttctgaaatataattacaggAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCCGATGGGGCTGGCAGTCACAGAAAGCTTGGGGGGCCCTCTGGAGACGGAGCTCC-TGAAGGCAGGGAGGCAGATGGGACAggtcagtttgagggtctggtggccaggatgtccctgttccatgtctcccac Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGC-ACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg tcctcgccttctcttcttccttataccttctttctgaaatataattacaggAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCCGATGGGGCTGGCAGTCACAGAAAGCTTGGGGGGCCCTCTGGAGACGGAGC-TCCTGAAGGCAGGGAGGCAGATGGGACAggtcagtttgagggtctggtggccaggatgtccctgttccatgtctcccac Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG tcctcgccttctcttcttccttataccttctttctgaaatataattacagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCCGATGGGGCTGGCAGTCACAGAAAGCTTGGGGGGCCCTCTGGAGACGGAGCTCCTGAAGGCAGGGAGGCAGATGGGACAGgtcagtttgagggtctggtggccaggatgtccctgttccatgtctcccac Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAG-CACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG tcctcgccttctcttcttccttataccttctttctgaaatataattacagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCCGATGGGGCTGGCAGTCACAGAAAGCTTGGGGGGCCCTCTGGAGACGGAGCTCC-TGAAGGCAGGGAGGCAGATGGGACAGgtcagtttgagggtctggtggccaggatgtccctgttccatgtctcccac Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAG-CACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG tcctcgccttctcttcttccttataccttctttctgaaatataattacagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCCGATGGGGCTGGCAGTCACAGAAAGCTTGGGGGGCCCTCTGGAGACGGAGCT-CCTGAAGGCAGGGAGGCAGATGGGACAGgtcagtttgagggtctggtggccaggatgtccctgttccatgtctcccac Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG tcctcgccttctcttcttccttataccttctttctgaaatataattacagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCCGATGGGGCTGGCAGTCACAGAAAGCTTGGGGGGCCCTCTGGAGACGGAGCTCCTGAAGGCAGGGAGGCAGATGGGACAGgtcagtttgagggtctggtggccaggatgtccctgttccatgtctcccac Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAG-CACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG tcctcgccttctcttcttccttataccttctttctgaaatataattacagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCCGATGGGGCTGGCAGTCACAGAAAGCTTGGGGGGCCCTCTGGAGACGGAGCT-CCTGAAGGCAGGGAGGCAGATGGGACAGgtcagtttgagggtctggtggccaggatgtccctgttccatgtctcccac Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG tcctcgccttctcttcttccttataccttctttctgaaatataattacagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCCGATGGGGCTGGCAGTCACAGAAAGCTTGGGGGGCCCTCTGGAGACGGAGCTCCTGAAGGCAGGGAGGCAGATGGGACAGgtcagtttgagggtctggtggccaggatgtccctgttccatgtctcccac #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTG-GTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttaggGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGCGTGGAGAAAATCATGGACCAGTACCGTGTAC-AGAACCTGGGCCCCTACCCCGTACCaagtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from CESAR gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTG-GTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttaggGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGCGTGGAGAAAATCATGGACCAGTACCGTGTA-CAGAACCTGGGCCCCTACCCCGTACCaagtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Spaln_aa2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTG-GTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGcGTGGAGAAAATCATGGACCAGTACCGTGTACA-GAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Spaln_nt2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTG-GTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGCGTGGAGAAAATCATGGACCAGTACCGTGTAC-AGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Pairagon GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTG-GTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGCGTGGAGAAAATCATGGACCAGTACCGTGTAC-AGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Exonerate_protein2genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGCGTGGAGAAAATCATGGACCAGTACCGTGTACAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Exonerate_coding2genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGG-TGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGCGTGGAGAAAATCATGGACCAGTACCGTG-TACAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from GeneWise GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGCGTGGAGAAAATCATGGACCAGTACCGTGTACAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCA-ACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCAGTGGACCTG---CGCTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTC-GAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCAGTGGACCTG--CGCTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACT-CGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCAGTGGACCTGC--GCTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCG-AATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCAGTGGACCTG--CGCTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTC-GAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCAGTGGACCTG--CGCTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTC-GAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCAGTGGACCTGCGCTGGGGCGCG---AGCTGGGCCTCGGACTGTGGAGACTCGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCAGTGGACC--TGCGCTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACT-CGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCAGTGGACCTGCGCTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCG---AATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCA-CTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttaggTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACCTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGG-GGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCA-CTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttaggTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACCTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAG-GGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCA-CTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCAcCTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGG-GAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCA-CTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACCTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGG-GGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Pairagon GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCA-CTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACCTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGG-GGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCA-CTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACCTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGgggagctgatccaggtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCAC-TGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACCTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGgggagctgatccaggtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACCTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGAT-GAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagccTCCCTACCTGGAGCAGCACCCTCACTGCAAGATCGAGGTGAGGGAAGCAGAGGGTGGGAGGCTGAGGGCAGTGG-ACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGAT-GAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagccTCCCTACCTGGAGCAGCACCCTCACTGCAAGATCGAGGTGAGGGAAGCAGAGGGTGGGAGGCTGAGGGCAGTGG-ACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATCGAGGTGAGGGAAGCAGAGGGTGGGAGGCTGAGGGCAGTGGACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGAT-GAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATCGAGGTGAGGGAAGCAGAGGGTGGGAGGCTGAGGGCAGTGG-ACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGAT-GAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATCGAGGTGAGGGAAGCAGAGGGTGGGAGGCTGAGGGCAGTGG-ACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATCGAGGTGAGGGAAGCAGAGGGTGGGAGGCTGAGGGCAGTGGACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATG-AGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGG--AACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATCGAGGTGAGGGAAGCAGAGGGTGGGAGGCTGAGGGCAGTGGAC---GGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATCGAGGTGAGGGAAGCAGAGGGTGGGAGGCTGAGGGCAGTGGACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTC-TCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCCTCACACCATCTGGCTCTGCAGCTGACCAATGCCA-GGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTC-TCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCCTCACACCATCTGGCTCTGCAGCTGACCAATGCCA-GGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGT-CTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCCTCACACCATCTGGCTCTGCAGCTGACCAATGCC-AGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGT-CTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCCTCACACCATCTGGCTCTGCAGCTGACCAATGCC-AGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTC-TCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCCTCACACCATCTGGCTCTGCAGCTGACCAATGCC-AGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct #### Ccdc88b_ID1842_7 --> 0 - 0 Original Alignment GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTG-GAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGCGAGATGCAGTTACGGAGCCTGACGGGGATGATGT-CAGGCTGGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from CESAR GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTG-GAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGCGAGATGCAGTTACGGAGCCTGACGGGGATGATGT-CAGGCTGGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Spaln_aa2Genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGCGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCAGGCTGGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Spaln_nt2Genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTG-GAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGCGAGATGCAGTTACGGAGCCTGACGGGGATGATGTC-AGGCTGGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Pairagon GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTG-GAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGCGAGATGCAGTTACGGAGCCTGACGGGGATGATGT-CAGGCTGGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Exonerate_protein2genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGCGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCAGGCTGGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Exonerate_coding2genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTG-GAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGCGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCA-GGCTGGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from GeneWise GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGCGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCAGGCTGGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagtGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCT-TCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagtGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTC-TTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCT-TCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCT-TCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAAC--CTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTT---CATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTC-TTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTCACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCC-TCGGGTGCTGGGCATCatgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTCACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCC-TCGGGTGCTGGGCATCatgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTcACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCT-CGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTCACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCT-CGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTCACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCC-TCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTCACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTCGGGTGCTGGGCATCATGtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGT-ACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTCACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTC-GGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTCACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagatTATGCATTTCTAAATTATGCGCCTTCTTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCCTGTCTCCAACATGGCCCACAAGACTACACCGTC-CACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagatTATGCATTTCTAAATTATGCGCCTTCTTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCCTGTCTCCAACATGGCCCACAAGACTACACCGT-CCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCCTGTCTCCAACATGGCCCACAAGACTACACCGTCCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCCTGTCTCCAACATGGCCCACAAGACTACACCGTC-CACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCCTGTCTCCAACATGGCCCACAAGACTACACCGTC-CACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGT--CTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCCTGTCTCCAACATGGCCCACAAGACTACACCGTCC---ACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGT--CTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCCTGTCTCCAACATGGCCCACAAGACTACACCGTCC---ACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from GeneWise -------------------------------------------------GATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT TGGTGACCTAAGTGTTTTGTTGTTCAGGGAACCTTCTGCGTGTTTCCTAGATTATGCATTTCTAAATTATGCGCCTTCTTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCCTGTCTCCAACATGGCCCACAAGACTACACCGTCCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc #### Cd6_ID3012_12 --> 2 - 1 Original Alignment ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagctgggctcctggcagagaatgttgtggctttctgtgctgcagggCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTC-AGCAGAACAGTTTGAATGTCCAggtgagtggggtcaggggtgggccatagaggatgtgggtaggatgaagaaa Alignment from CESAR ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagctgggctcctggcagagaatgttgtggctttctgtgctgcagggCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATC-CTCAGCAGAACAGTTTGAATGTCCAggtgagtggggtcaggggtgggccatagaggatgtgggtaggatgaagaaa Alignment from Spaln_aa2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagctgggctcctggcagagaatgttgtggctttctgtgctgcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCAGCAGAACAGTTTGAATGTCCAGgtgagtggggtcaggggtgggccatagaggatgtgggtaggatgaagaaa Alignment from Spaln_nt2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagctgggctcctggcagagaatgttgtggctttctgtgctgcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTC-AGCAGAACAGTTTGAATGTCCAGgtgagtggggtcaggggtgggccatagaggatgtgggtaggatgaagaaa Alignment from Pairagon GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagctgggctcctggcagagaatgttgtggctttctgtgctgcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCT-CAGCAGAACAGTTTGAATGTCCAGgtgagtggggtcaggggtgggccatagaggatgtgggtaggatgaagaaa Alignment from Exonerate_protein2genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCT--CCAGCAGAACAGTTTGAATGTCCAG atgtgcagctgggctcctggcagagaatgttgtggctttctgtgctgcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCA---GCAGAACAGTTTGAATGTCCAGgtgagtggggtcaggggtgggccatagaggatgtgggtaggatgaagaaa Alignment from Exonerate_coding2genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCT--CCAGCAGAACAGTTTGAATGTCCAG atgtgcagctgggctcctggcagagaatgttgtggctttctgtgctgcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCA---GCAGAACAGTTTGAATGTCCAGgtgagtggggtcaggggtgggccatagaggatgtgggtaggatgaagaaa Alignment from GeneWise GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGA-GAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagctgggctcctggcagagaatgttgtggctttctgtgctgcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCA-GCAGAACAGTTTGAATGTCCAGgtgagtggggtcaggggtgggccatagaggatgtgggtaggatgaagaaa #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGC-GCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from CESAR GTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATG-CGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Spaln_aa2Genome GGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcaggttgttgtggtgagGCCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCG-CATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGC-AGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGC-GCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Pairagon GTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGC-GCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCA---GAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGG--CCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCG-CATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from GeneWise GGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcaggttgttgtggtgagGCCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCG-CATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTC-CGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACC-CCGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from CESAR ACGGCCTGTTTC-CGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGAC-CCCGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Spaln_aa2Genome ACGGCCTGTTTC-CGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCcCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCC-CGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Spaln_nt2Genome ACGGCCTGTTTCC-GGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGAC-CCCGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Pairagon ACGGCCTGTTT-CCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACC-CCGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCCCGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCCCGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCCCGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGC-CACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctaggGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCGCCTTGCAGACTTTGGCTCCTGCCTGC-TCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGC-CACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctaggGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCGCCTTGCAGACTTTGGCTCCTGCCTG-CTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCGCCTTGCAGACTTTGGCTCCTGCCTGCTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGC-CACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCGCCTTGCAGACTTTGGCTCCTGCCTGC-TCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGG-CCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCGCCTTGCAGACTTTGGCTCCTGCCTGC-TCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGC-CACATCCGCCTGGCAGACTTTGGCTCCTGCCTG--CGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCGCCTTGCAGACTTTGGCTCCTGCCTGCT---CTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGC-CACATCCGCCTGGCAGACTTTGGCTCCTGCCTG--CGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCGCCTTGCAGACTTTGGCTCCTGCCTGCT---CTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCGCCTTGCAGACTTTGGCTCCTGCCTGCTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCA-GTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCACGTCGCAGTTGGGACCCCGGACTACATCTCTC-TGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from CESAR GTGGATTCATCA-GTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCACGTCGCAGTTGGGACCCCGGACTACATCT-CTCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Spaln_aa2Genome GTGGATTCATCA-GTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAcGTCGCAGTTGGGACCCCGGACTACATCTCTCT-GAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Spaln_nt2Genome GTGGATTCATCA-GTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCACGTCGCAGTTGGGACCCCGGACTACATCTCT-CTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Pairagon GTGGATTCATCA-GTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCACGTCGCAGTTGGGACCCCGGACTACATCTCT-CTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCACGTCGCAGTTGGGACCCCGGACTACATCTCTCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCACGTCGCAGTTGGGACCCCGGACTACATCTCTCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCACGTCGCAGTTGGGACCCCGGACTACATCTCTCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagagCCCCTGCATGGCCCATTACCAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTC-GGTTCTTCAGGAGAAACTGGCAggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagagCCCCTGCATGGCCCATTACCAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTT-CGGTTCTTCAGGAGAAACTGGCAggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTAcCAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCG-GTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACCAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTC-GGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACCAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTC-GGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACCAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACCAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACCAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCG-CAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ttgaggtgagcactctgacttggctttgacccttttctcctttcatgtagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCACCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAG-CCAGGAGAGAGAGTCAGCTGCAGCCGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagtggagaggcagtgggagggttcagggcattgggaaccccatatgg Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCG-CAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ttgaggtgagcactctgacttggctttgacccttttctcctttcatgtagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCACCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAG-CCAGGAGAGAGAGTCAGCTGCAGCCGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagtggagaggcagtgggagggttcagggcattgggaaccccatatgg Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCG-CAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ttgaggtgagcactctgacttggctttgacccttttctcctttcatgtagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCAcCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGC-CAGGAGAGAGAGTCAGCTGCAGCCGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagtggagaggcagtgggagggttcagggcattgggaaccccatatgg Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGC-AGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ttgaggtgagcactctgacttggctttgacccttttctcctttcatgtagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCACCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAG-CCAGGAGAGAGAGTCAGCTGCAGCCGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagtggagaggcagtgggagggttcagggcattgggaaccccatatgg Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCG-CAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ttgaggtgagcactctgacttggctttgacccttttctcctttcatgtagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCACCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAG-CCAGGAGAGAGAGTCAGCTGCAGCCGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagtggagaggcagtgggagggttcagggcattgggaaccccatatgg Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCG-CAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAA--GCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ttgaggtgagcactctgacttggctttgacccttttctcctttcatgtagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCACCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGC---CAGGAGAGAGAGTCAGCTGCAGCCGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagtggagaggcagtgggagggttcagggcattgggaaccccatatgg Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCG-CAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAA--GCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ttgaggtgagcactctgacttggctttgacccttttctcctttcatgtagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCACCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGC---CAGGAGAGAGAGTCAGCTGCAGCCGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagtggagaggcagtgggagggttcagggcattgggaaccccatatgg Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAA-GCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ttgaggtgagcactctgacttggctttgacccttttctcctttcatgtagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCACCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGC-CAGGAGAGAGAGTCAGCTGCAGCCGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagtggagaggcagtgggagggttcagggcattgggaaccccatatgg #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCT-GAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTCGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGG-AGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgggtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCT-GAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTCGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGG-AGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgggtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTCGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCT-GAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTCGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGG-AGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCT-GAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTCGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGG-AGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTCGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTCGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTCGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAA-GAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcaggATCAGTGTTGGGAAACGAAGAGGTTCTATGCCGATTGCAGGAGGTAA-CCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from CESAR gATCAGTGTTGGGAAA-GAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcaggATCAGTGTTGGGAAACGAAGAGGTTCTATGCCGATTGCAGGAG-GTAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAACGAAGAGGTTCTATGCCGATTGCAGGAGGTAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAA-GAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAACGAAGAGGTTCTATGCCGATTGCAGGAGG-TAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Pairagon GATCAGTGTTGGGAAA-GAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAACGAAGAGGTTCTATGCCGATTGCAGGAGG-TAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAACGAAGAGGTTCTATGCCGATTGCAGGAGGTAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAACGAAGAGGTTCTATGCCGATTGCAGGAGGTAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAACGAAGAGGTTCTATGCCGATTGCAGGAGGTAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg #### Cdc42bpg_ID1589_19 --> 0 - 2 Original Alignment GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg agggaatctctgaagctgtcatcttacatagtcattctccctccacacagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGAGATCCGTCGCCAAGCAGAGTCTGCAGGAGCAGCTTATGCAGGTGCAGG-GGCTCAGCGGCAGGCCGAAtggtaaggccatgggcagactggagtgaagtgccttccgaggcctggggtgt Alignment from CESAR GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg agggaatctctgaagctgtcatcttacatagtcattctccctccacacagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGAGATCCGTCGCCAAGCAGAGTCTGCAGGAGCAGCTTATGCAGGTGCAG-GGGCTCAGCGGCAGGCCGAAtggtaaggccatgggcagactggagtgaagtgccttccgaggcctggggtgt Alignment from Spaln_aa2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG agggaatctctgaagctgtcatcttacatagtcattctccctccacacagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGAGATCCGTcGCCAAGCAGAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGG-GCTCAGCGGCAGGCCGAATGgtaaggccatgggcagactggagtgaagtgccttccgaggcctggggtgt Alignment from Spaln_nt2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG agggaatctctgaagctgtcatcttacatagtcattctccctccacacagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGAGATCCGTCGCCAAGCAGAGTCTGCAGGAGCAGCTTATGCAGGTGCAGG-GGCTCAGCGGCAGGCCGAATGgtaaggccatgggcagactggagtgaagtgccttccgaggcctggggtgt Alignment from Pairagon GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG agggaatctctgaagctgtcatcttacatagtcattctccctccacacagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGAGATCCGTCGCCAAGCAGAGTCTGCAGGAGCAGCTTATGCAGGTGCAGG-GGCTCAGCGGCAGGCCGAATGgtaaggccatgggcagactggagtgaagtgccttccgaggcctggggtgt Alignment from Exonerate_protein2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG agggaatctctgaagctgtcatcttacatagtcattctccctccacacagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGAGATCCGTCGCCAAGCAGAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGGGCTCAGCGGCAGGCCGAATGgtaaggccatgggcagactggagtgaagtgccttccgaggcctggggtgt Alignment from Exonerate_coding2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG agggaatctctgaagctgtcatcttacatagtcattctccctccacacagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGAGATCCGTCGCCAAGCAGAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGGGCTCAGCGGCAGGCCGAATGgtaaggccatgggcagactggagtgaagtgccttccgaggcctggggtgt Alignment from GeneWise GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG agggaatctctgaagctgtcatcttacatagtcattctccctccacacagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGAGATCCGTCGCCAAGCAGAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGGGCTCAGCGGCAGGCCGAATGgtaaggccatgggcagactggagtgaagtgccttccgaggcctggggtgt #### Cdc42bpg_ID1594_24 --> 0 - 1 Original Alignment CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGT-CTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCC-TCAGGGCCTGGGCTGTGACagtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from CESAR CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGT-CTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGC-CTCAGGGCCTGGGCTGTGACagtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Spaln_aa2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Spaln_nt2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGT-CTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCTC-AGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Pairagon CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGT-CTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCC-TCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Exonerate_protein2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Exonerate_coding2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from GeneWise CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GTGCCGCGGCCC-TCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACG-TGCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAaggtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from CESAR GTGCCGCGG-CCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTAC-GTGCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAaggtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Spaln_aa2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGTGCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Spaln_nt2Genome GTGCCGCGGCCC-TCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACG-TGCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Pairagon GTGCCGCGG-CCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACG-TGCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Exonerate_protein2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGTGCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Exonerate_coding2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGTGCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from GeneWise ------------------------------------------------------------CCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTGTGGGAGTGAGGGCCAGTGCAGCCCATCAGTGTTTTCTTCCCTCCAGGTGCCACAGCCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGT-GCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCA-GCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctaggGACCCCCAGTTCTCACGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAAT-CAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from CESAR gGACCCCCAGTTCTCA-GCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctaggGACCCCCAGTTCTCACGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAAT-CAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCA-GCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCAcGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATC-AAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCA-GCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCACGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAAT-CAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Pairagon GGACCCCCAGTTCTCA-GCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCACGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAAT-CAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCACGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGC---CACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTC--TCACGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATC-AAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCACGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg #### Cdc42bpg_ID1602_32 --> 0 - 1 Original Alignment GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCACGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAAGTCCGCC-GACCTACCTCAGGAATCCATTGGCAggtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from CESAR GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCACGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAAGTCCGC-CGACCTACCTCAGGAATCCATTGGCAggtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Spaln_aa2Genome GCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtaggtgagacccctgaatccacgaagGCTCCTTGTTCCTTTATGGCACCGAGAAAGTCCGCCG-ACCTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Spaln_nt2Genome GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCACGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAAGTCCGCC-GACCTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Pairagon GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCACGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAAGTCCGCC-GACCTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Exonerate_protein2genome GTGAGACCCCTGAATCCA-GAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGC--CTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCACGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAAGTCCGCCG---ACCTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Exonerate_coding2genome GTGAGACCCCTGAATCCAGA---AGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCA--CGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAAGTCCGCCG-ACCTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from GeneWise CCTTGTTCCTTTATGGCACCGAGAAG- GGCTAGGTGCAGTGGGTGACATGGCTTgtttattttgtgtgcctttgtaggtgagacccctgaatccacgaaggctccttgttcctttatggcaccgagaaagtccgccgacctacctcaggaatccattggcaggtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATC-TCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaaggGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAATTCATCCTCGCCGCCCACCAACTTCATCCACCTGGTGCATGTGG-CCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATC-TCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaaggGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAATTCATCCTCGCCGCCCACCAACTTCATCCACCTGGTGCATG-TGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAATTCATCCTCGCCGCCCACCAACTTCATCCACCTGGTGCATGTGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCAT-CTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAATTCATCCTCGCCGCCCACCAACTTCATCCACCTGGTGCATGT-GGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCAT-CTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAATTCATCCTCGCCGCCCACCAACTTCATCCACCTGGTGCATGT-GGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAATTCATCCTCGCCGCCCACCAACTTCATCCACCTGGTGCATGTGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAATTCATCCTCGCCGCCCACCAACTTCATCCACCTGGTGCATGTGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAATTCATCCTCGCCGCCCACCAACTTCATCCACCTGGTGCATGTGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGC-AGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCT-AGAGGCATTTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCAtgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from CESAR GCTCAGGAACAGAAGAGC-AGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTC-TAGAGGCATTTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCAtgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Spaln_aa2Genome GAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcaggctcaggaacagAAGAGCCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTA-GAGGCATTTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAG-CAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCT-AGAGGCATTTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Pairagon GCTCAGGAACAGAAGAG-CAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCT-AGAGGCATTTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGC-AGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTC--TCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTA---GAGGCATTTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGC-AGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTC--TCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTA---GAGGCATTTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from GeneWise GAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcaggctcaggaacagAAGAGCCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTA-GAGGCATTTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCG-CCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagccGGTAGTGTCCCATCGCCCGTCGGGCTCAGTGCCAGGAGCTGCTGCACCTTTCAGAC-ACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from CESAR ccGGGAGTGTCCCATCGCCA-TCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagccGGTAGTGTCCCATCGCCCGTCGGGCTCAGTGCCAGGAGCTGCTGCACCTTTCAGA-CACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Spaln_aa2Genome CCGGGAGTGTCCCATCG-CCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGcCCGTCGGGCTCAGTGCCAGGAGCTGCTGCACCTTTCAGACA-CTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Spaln_nt2Genome CCGGGAGTGTCCCATCG-CCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCCGTCGGGCTCAGTGCCAGGAGCTGCTGCACCTTTCAGA-CACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Pairagon CCGGGAGTGTCCCATCG-CCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCCGTCGGGCTCAGTGCCAGGAGCTGCTGCACCTTTCAGA-CACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCCGTCGGGCTCAGTGCCAGGAGCTGCTGCACCTTTCAGACACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Exonerate_coding2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCCGTCGGGCTCAGTGCCAGGAGCTGCTGCACCTTTCAGACACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCCGTCGGGCTCAGTGCCAGGAGCTGCTGCACCTTTCAGACACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCT-GTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTCGTCATAGAGGAGATGGGCAAAGAGATCCGGC-CACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAggtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCT-GTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTCGTCATAGAGGAGATGGGCAAAGAGATCCGGC-CACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAggtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTCGTCATAGAGGAGATGGGCAAAGAGATCCGGCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCT-GTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTCGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCT-GTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTCGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTCGTCATAGAGGAGATGGGCAAAGAGATCCGGCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCT-GTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTCGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTCGTCATAGAGGAGATGGGCAAAGAGATCCGGCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCA-CCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg tcttgagcattctggatgtagctgcagcattctttgttttttctttgaaggGCCCCCGAAAATGCACCCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATG-CATCAAGAAGAAGCTGACAggtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from CESAR gGCCCCCGAGAATGCA-CCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg tcttgagcattctggatgtagctgcagcattctttgttttttctttgaaggGCCCCCGAAAATGCACCCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATG-CATCAAGAAGAAGCTGACAggtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCC-CTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCcCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGC-ATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCA-CCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGC-ATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Pairagon GGCCCCCGAGAATGCA-CCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATG-CATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACC-CCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGC-ATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCACTGTGGATTATTGGAGCTTTG-TACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCACTGTGGATTATTGGAGCTTT-GTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCACTGTGGATTATTGGAGCTTTGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTA-CACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCACTGTGGATTATTGGAGCTTT-GTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTA-CACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCACTGTGGATTATTGGAGCTTT-GTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCACTGTGGATTATTGGAGCTTTGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCACTGTGGATTATTGGAGCTTTGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCACTGTGGATTATTGGAGCTTTGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCACGA-GGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcaggtGACAGGGGCCCTGCTGGACCACGACGGTCCTCCAGGGCAACCTGGCCCCAGAGGGAACA-AGGAGAGAAAGGAGACAAAggtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from CESAR gtGACAGGGGCCCTGCTGGACCACGA-GGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcaggtGACAGGGGCCCTGCTGGACCACGACGGTCCTCCAGGGCAACCTGGCCCCAGAGGGAACA-AGGAGAGAAAGGAGACAAAggtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGA-GGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGAcGGTCCTCCAGGGCAACCTGGCCCCAGAGGGAACAA-GGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCACGA-GGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGACGGTCCTCCAGGGCAACCTGGCCCCAGAGGGAACAAG-GAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCACGA-GGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGACGGTCCTCCAGGGCAACCTGGCCCCAGAGGGAAC-AAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGACGGTCCTCCAGGGCAACCTGGCCCCAGAGGGAACAAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGA-GGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGACGGTCCTCCAGGGCAACCTGGCCCCAGAGGGAAC-AAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGACGGTCCTCCAGGGCAACCTGGCCCCAGAGGGAACAAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag #### Col17a1_ID10273_49 --> 2 - 1 Original Alignment gtCAGGGTCTGCTACAAGGGATGGCCTACACTGTC-CAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAa tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttaggtCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCCAGGGCCCGCCTGGGCCTCAAGGCCCTC-TGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAagtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from CESAR gtCAGGGTCTGCTACAAGGGATGGCCTACACTGTC-CAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAa tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttaggtCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCCAGGGCCCGCCTGGGCCTCAAGGCC-CTCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAagtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Spaln_aa2Genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCCAGGGCCCGCCTGGGCCTCAAGGCCCTCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Spaln_nt2Genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCCAGGGCCCGCCTGGGCCTCAAGGCCCTCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Pairagon GTCAGGGTCTGCTACAAGGGATGGCCTACACTGT-CCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCCAGGGCCCGCCTGGGCCTCAAGGCCCT-CTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Exonerate_protein2genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCCAGGGCCCGCCTGGGCCTCAAGGCCCTCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Exonerate_coding2genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCCAGGGCCCGCCTGGGCCTCAAGGCCCTCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from GeneWise GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCCAGGGCCCGCCTGGGCCTCAAGGCCCTCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCA-GGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctaggtGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCACGGGCCTGTCATCACCATCACAGGAGAGACTT-TGACTACTCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGtgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCA-GGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctaggtGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCACGGGCCTGTCATCACCATCACAGGAGAGA-CTTTGACTACTCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGtgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCACGGGCCTGTCATCACCATCACAGGAGAGACTTTGACTACTCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGT-CCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCACGGGCCTGTCATCACCATCACAGGAGAGAC-TTTGACTACTCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCA-GGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCACGGGCCTGTCATCACCATCACAGGAGAGACTTT-GACTACTCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCACGGGCCTGTCATCACCATCACAGGAGAGACTTTGACTACTCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGG---GCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCA--CGGGCCTGTCATCACCATCACAGGAGAGAC-TTTGACTACTCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCACGGGCCTGTCATCACCATCACAGGAGAGACTTTGACTACTCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggagagagaaggagctgagtcaactatattattatttttacagggGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTG-GCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAagtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from CESAR ggGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggagagagaaggagctgagtcaactatattattatttttacagggGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTG-GCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAagtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Spaln_aa2Genome GCGTCATCAAGCACT---CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGG-CCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGG-CCCCCTGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Pairagon GGGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from GeneWise ---GCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGG-CCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agggtgagtggggagacaatagaccggagttcgttttttattccttctagctTCCTTTTCAGAAGACACCCTGCAAAAAGGAGAAGCAGGCTGCATATGCCGCTG-CACCTGCCTCAAGGCGGATGTGAATggtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from CESAR ctTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agggtgagtggggagacaatagaccggagttcgttttttattccttctagctTCCTTTTCAGAAGACACCCTGCAAAAAGGAGAAGCAGGCTGCATATGCCGCT-GCACCTGCCTCAAGGCGGATGTGAATggtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGcAAAAAGGAGAAGCAGGCTGCATATGCCGCTGC-ACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGCAAAAAGGAGAAGCAGGCTGCATATGCCGCTG-CACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGCAAAAAGGAGAAGCAGGCTGCATATGCCGCTG-CACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGCAAAAAGGAGAAGCAGGCTGCATATGCCGCTGCACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGCAAAAAGGAGAAGCAGGCTGCATATGCCGCTGCACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGCAAAAAGGAGAAGCAGGCTGCATATGCCGCTGCACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGCGCATTCCCAACAGTGTGTGGGCACACAGGGCCTG-TCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from CESAR ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGCGCATTCCCAACAGTGTGTGGGCACACAGGGCCTG-TCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGcGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGT-CTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGCGCATTCCCAACAGTGTGTGGGCACACAGGGCCTG-TCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Pairagon ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGCGCATTCCCAACAGTGTGTGGGCACACAGGGCCTG-TCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGCGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGCGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGCGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTG-ACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGCACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGG-CATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAggtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTG-ACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGCACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTG-TGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAggtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTG-ACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGcACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGT-GGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTG-ACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGCACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGT-GGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTG-ACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGCACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGT-GGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGCACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGCACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGCACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTG-TACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactaggcTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGCTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACA-TGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTG-TACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactaggcTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGCTACCGTCTGGACAGCTTGCACCCCGACCTCATCTAC-ATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGCTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTG-TACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGCTACCGTCTGGACAGCTTGCACCCCGACCTCATCTAC-ATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTG-TACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGCTACCGTCTGGACAGCTTGCACCCCGACCTCATCTAC-ATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGCTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGCTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGCTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCCATGGCCCTGCAG-GAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGCGAGCTGGATTCAAGCAATGGGGCTCTACTGC-CTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from CESAR GAAAACCTTGAGGAGCCCATGGCCCTGCAG-GAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGCGAGCTGGATTCAAGCAATGGGGCTCTACTGCCTT-TTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Spaln_aa2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGCGAGCTGGATTCAAGCAATGGGGCTCTACTGCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAG-GAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGCGAGCTGGATTCAAGCAATGGGGCTCTACTGCCT-TTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Pairagon GAAAACCTTGAGGAGCCCATGGCCCTGCAG-GAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGCGAGCTGGATTCAAGCAATGGGGCTCTACTG-CCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGCGAGCTGGATTCAAGCAATGGGGCTCTACTGCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGCGAGCTGGATTCAAGCAATGGGGCTCTACTGCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGCGAGCTGGATTCAAGCAATGGGGCTCTACTGCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcataggTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGG-GTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from CESAR gTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcataggTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAG-GGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Spaln_aa2Genome GTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACAcCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGG-TCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Spaln_nt2Genome GTTCGAGGTGACGC-GCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGG-GTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Pairagon GTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGG-GTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Exonerate_coding2genome GTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGGTCTG-ACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from GeneWise ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcataggttggaggtgacaccgccgactcttcccgcccatcccagggatcagggacaagggtctgacgacgtgcgagtgaaccctgaggtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCG-CCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagagCGACTCGGTCCCCCACGTGATGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCCTCAACCTGGGCATCCCTGACAGCCCGGGACT-TCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCG-CCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagagCGACTCGGTCCCCCACGTGATGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCCTCAACCTGGGCATCCCTGACAGCCCGGGACT-TCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCC-CTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTT-CAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCG-CCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTT-CAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCC-GGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ctgctatgacatcatcactggccctctgctccatctgttatacttttcaggGGTCACGACGTGGCGCGTTGCATGGCTGACCCTCGGGGACGATGTCATCACACAGTGCATTGCAAATG-TTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCggcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCC-GGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ctgctatgacatcatcactggccctctgctccatctgttatacttttcaggGGTCACGACGTGGCGCGTTGCATGGCTGACCCTCGGGGACGATGTCATCACACAGTGCATTGCAAAT-GTTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCggcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTCGGGGACGATGTCATCACACAGTGCATTGCAAATGTTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGA-CCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTCGGGGACGATGTCATCACACAGTGCATTGCAAATG-TTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCC-CGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTCGGGGACGATGTCATCACACAGTGCATTGCAAATG-TTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCC-GGGGATGACGTCATCACACAGTGCATTGCGAAC--GACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTCGGGGACGATGTCATCACACAGTGCATTGCAAATGT---TTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Exonerate_coding2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCC-GGGGATGACGTCATCACACAGTGCATTGCGAAC--GACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTCGGGGACGATGTCATCACACAGTGCATTGCAAATGT---TTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCGAGCGA--------- ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTCGGGGACGATGTCATCACACAGTGCATTGCAAATGTTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGGCAAGTTTGGATTTgtgagtgggggcggggcttgtgagcctaattggcag #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctaggcACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGCATCCGAGCCTCTCGCTTCCTTTCCTGTGCAT-GCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctaggcACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGCATCCGAGCCTCTCGCTTCCTTTCCTGTGCA-TGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGCATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGCATCCGAGCCTCTCGCTTCCTTTCCTGTGCAT-GCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGCATCCGAGCCTCTCGCTTCCTTTCCTGTGCAT-GCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGCATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGCATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGCATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGG-AGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGCAGGATGATGGCGCTGCACCATGGTGTCACGC-GGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAggtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGG-AGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGCAGGATGATGGCGCTGCACCATGGTGTCACG-CGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAggtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGCAGGATGATGGCGCTGCACCATGGTGTCACGCGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGG-AGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGCAGGATGATGGCGCTGCACCATGGTGTCACGC-GGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGG-AGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGCAGGATGATGGCGCTGCACCATGGTGTCACGC-GGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGCAGGATGATGGCGCTGCACCATGGTGTCACGCGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGCAGGATGATGGCGCTGCACCATGGTGTCACGCGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGCAGGATGATGGCGCTGCACCATGGTGTCACGCGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACT-CGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagctCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCA-GGTGATGTCATGCACTGTGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACT-CGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagctCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTC-AGGTGATGTCATGCACTGTGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACT-CGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTcCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCAG-GTGATGTCATGCACTGTGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACT-CGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCAC------CGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCA-GGTGATGTCATGCACTGTGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACT-CGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTC--------------------------------------------------- tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCA-GGTGATGTCATGCACTGTGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAGTAGACGGGGGTAGGGTGAGAGGGCCTTGTCCCACAATGATGTCACTTCC Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACT-CGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAAC-----GTCACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCAGGTGATGTCATGCACTGTGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACT-CGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAAC-----GTCACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCAGGTGATGTCATGCACTGTGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGG-ACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCAG-GTGATGTCATGCACTGTGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCC-CTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggctcggccagttcgttcacgtcccactcgcagGCTGGCCAGGGCTCTCTGTTCTCCCCTGGAAGCCACACTAGAGGAGCCACCTTGCA-TGATCCCCTGGTGTGCCCACTTCCTGAAACGAAGAAAACTGTGgtacatgaagtggtcatctattattggccctggctagtaaataattataa Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCC-CTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggctcggccagttcgttcacgtcccactcgcagGCTGGCCAGGGCTCTCTGTTCTCCCCTGGAAGCCACACTAGAGGAGCCACCTTGC-ATGATCCCCTGGTGTGCCCACTTCCTGAAACGAAGAAAACTGTGgtacatgaagtggtcatctattattggccctggctagtaaataattataa Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggctcggccagttcgttcacgtcccactcgcagGCTGGCCAGGGCTCTCTGTTCTCCCCTGGAAGCCACACTAGAGGAGCCACCTTGCATGATCCCCTGGTGTGCCCACTTCCTGAAACGAAGAAAACTGTGgtacatgaagtggtcatctattattggccctggctagtaaataattataa Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCT-CCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggctcggccagttcgttcacgtcccactcgcagGCTGGCCAGGGCTCTCTGTTCTCCCCTGGAAGCCACACTAGAGGAGCCACCTTGC-ATGATCCCCTGGTGTGCCCACTTCCTGAAACGAAGAAAACTGTGgtacatgaagtggtcatctattattggccctggctagtaaataattataa Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCT-CCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggctcggccagttcgttcacgtcccactcgcagGCTGGCCAGGGCTCTCTGTTCTCCCCTGGAAGCCACACTAGAGGAGCCACCTTGC-ATGATCCCCTGGTGTGCCCACTTCCTGAAACGAAGAAAACTGTGgtacatgaagtggtcatctattattggccctggctagtaaataattataa Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggctcggccagttcgttcacgtcccactcgcagGCTGGCCAGGGCTCTCTGTTCTCCCCTGGAAGCCACACTAGAGGAGCCACCTTGCATGATCCCCTGGTGTGCCCACTTCCTGAAACGAAGAAAACTGTGgtacatgaagtggtcatctattattggccctggctagtaaataattataa Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggctcggccagttcgttcacgtcccactcgcagGCTGGCCAGGGCTCTCTGTTCTCCCCTGGAAGCCACACTAGAGGAGCCACCTTGCATGATCCCCTGGTGTGCCCACTTCCTGAAACGAAGAAAACTGTGgtacatgaagtggtcatctattattggccctggctagtaaataattataa Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggctcggccagttcgttcacgtcccactcgcagGCTGGCCAGGGCTCTCTGTTCTCCCCTGGAAGCCACACTAGAGGAGCCACCTTGCATGATCCCCTGGTGTGCCCACTTCCTGAAACGAAGAAAACTGTGgtacatgaagtggtcatctattattggccctggctagtaaataattataa #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAA-GTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAACGTCCTGGAAGAGCTAAAGGAACACTTGCTGCTGA-GAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from CESAR CTCTGCAGTTTTGAA-GTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAACGTCCTGGAAGAGCTAAAGGAACACTTGCTGCTGA-GAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAA-GTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAcGTCCTGGAAGAGCTAAAGGAACACTTGCTGCTGAG-AGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAA-GTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAACGTCCTGGAAGAGCTAAAGGAACACTTGCTGCTGA-GAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Pairagon CTCTGCAGTTTTGAA-GTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAACGTCCTGGAAGAGCTAAAGGAACACTTGCTGCTGA-GAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAACGTCCTGGAAGAGCTAAAGGAACACTTGCTGCTGAGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAACGTCCTGGAAGAGCTAAAGGAACACTTGCTGCTGAGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAACGTCCTGGAAGAGCTAAAGGAACACTTGCTGCTGAGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTG-AATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagagGAGGAATTCCACACCATCTACCTGCATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGA-TCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAAT-CCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagagGAGGAATTCCACACCATCTACCTGCATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATG-ATCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGCATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGATCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATC-CCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGCATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGA-TCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAA-TCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGCATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGA-TCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGCATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGATCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGCATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGATCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGCATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGATCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGT-GGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTCGGCTCCTGCTGGGCCTTTTCTGTCACAG-CAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from CESAR GGC---ATGTGT-GGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTCGGCTCCTGCTGGGCCTTTTCTGTCA-CAGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_aa2Genome GGC---ATGTGT-GGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTcGGCTCCTGCTGGGCCTTTTCTGTCACAGC-AACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_nt2Genome GGCA---TGTGT-GGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTCGGCTCCTGCTGGGCCTTTTCTGTCACA-GCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Pairagon GGC---ATGTGT-GGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTCGGCTCCTGCTGGGCCTTTTCTGTCACA-GCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_protein2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTCGGCTCCTGCTGGGCCTTTTCTGTCACAGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_coding2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTCGGCTCCTGCTGGGCCTTTTCTGTCACAGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTCGGCTCCTGCTGGGCCTTTTCTGTCACAGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagagCTCTTGGATTGTGACAAGGTGCGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAG-CATAAAGAATCTGggtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from CESAR agCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagagCTCTTGGATTGTGACAAGGTGCGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAG-CATAAAGAATCTGggtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGcGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGC-ATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGCGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAG-CATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGCGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAG-CATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGCGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGCGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGCGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTT-CAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCCAGACCTGCAACTTCTCAGCACAGATGGCAAAAG-CTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATagttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTT-CAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCCAGACCTGCAACTTCTCAGCACAGATGGCAAAA-GCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATagttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTT-CAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCCAGACCTGCAACTTCTCAGCACAGATGGC-AAAAGCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTT-CAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCCAGACCTGCAACTTCTCAGCACAGATGGCAAAAG-CTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCA-CGACCATGCGGTGTTGCTAGTGGGCTATGGCAACcgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from CESAR TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTC-ACGACCATGCGGTGTTGCTAGTGGGCTATGGCAACcgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCACGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCA-CGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Pairagon TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCA-CGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTC--ATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCAC---GACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTC--ATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCAC---GACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCACGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACACGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACT-CTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACACGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCTT-CTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACACGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACACGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACT-CTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACACGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACT-CTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCC--TCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACACGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCTTCTCA---TACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCC--TCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACACGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCTTCTCA---TACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACACGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGC-CTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tagtgagtgttcagcatgctaggttgcttgctgttgtttctgtctggcaggtGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCCTGGCCAAGAAGTACAAGGAGGTGGCCT-GATCCAGGATTTCACCACGTTGTCCAATAATGAGCAGggtaagcccagggtagaccagaagggtgagggcacacaacctggctatggg Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGC-CTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tagtgagtgttcagcatgctaggttgcttgctgttgtttctgtctggcaggtGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCCTGGCCAAGAAGTACAAGGAGGTGGCC-TGATCCAGGATTTCACCACGTTGTCCAATAATGAGCAGggtaagcccagggtagaccagaagggtgagggcacacaacctggctatggg Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgttcagcatgctaggttgcttgctgttgtttctgtctggcagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCCTGGCCAAGAAGTACAAGGAGGTGGCCTGATCCAGGATTTCACCACGTTGTCCAATAATGAGCAGGgtaagcccagggtagaccagaagggtgagggcacacaacctggctatggg Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCC-TAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgttcagcatgctaggttgcttgctgttgtttctgtctggcagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCCTGGCCAAGAAGTACAAGGAGGTGGCCT-GATCCAGGATTTCACCACGTTGTCCAATAATGAGCAGGgtaagcccagggtagaccagaagggtgagggcacacaacctggctatggg Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATG-CCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgttcagcatgctaggttgcttgctgttgtttctgtctggcagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCCTGGCCAAGAAGTACAAGGAGGTGGCCT-GATCCAGGATTTCACCACGTTGTCCAATAATGAGCAGGgtaagcccagggtagaccagaagggtgagggcacacaacctggctatggg Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgttcagcatgctaggttgcttgctgttgtttctgtctggcagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCCTGGCCAAGAAGTACAAGGAGGTGGCCTGATCCAGGATTTCACCACGTTGTCCAATAATGAGCAGGgtaagcccagggtagaccagaagggtgagggcacacaacctggctatggg Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgttcagcatgctaggttgcttgctgttgtttctgtctggcagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCCTGGCCAAGAAGTACAAGGAGGTGGCCTGATCCAGGATTTCACCACGTTGTCCAATAATGAGCAGGgtaagcccagggtagaccagaagggtgagggcacacaacctggctatggg Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgttcagcatgctaggttgcttgctgttgtttctgtctggcagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCCTGGCCAAGAAGTACAAGGAGGTGGCCTGATCCAGGATTTCACCACGTTGTCCAATAATGAGCAGGgtaagcccagggtagaccagaagggtgagggcacacaacctggctatggg #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAAC-ATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg gtttggcctaatccaacccaaggcatggactgtgttcctttctccttgagGGAAGTTGCAAATGCTGCTGGGCCATGGCAGCTGCTGACAACCATCCAGGCTCTGTGGCGCATCAAACACCAGCAGT-TGTGGATGTCTCTGTCCAGggtaggttaggggttggacatgtgtcgggccaggggacctgctcacctaga Alignment from CESAR GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAAC-ATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg gtttggcctaatccaacccaaggcatggactgtgttcctttctccttgagGGAAGTTGCAAATGCTGCTGGGCCATGGCAGCTGCTGACAACCATCCAGGCTCTGTGGCGCATCAAACACCAGCAG-TTGTGGATGTCTCTGTCCAGggtaggttaggggttggacatgtgtcgggccaggggacctgctcacctaaa Alignment from Spaln_aa2Genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAAC-ATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTT T gtttggcctaatccaacccaaggcatggactgtgttcctttctccttgagGGAAGTTGCAAATGCTGCTGGGCCATGGCAGCTGCTGACAACcATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTgtggatgtctctgtccagggtaggttaggggttggacatgtgtcgggccaggggacctgctcacctagA Alignment from Spaln_nt2Genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAA-CATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG gtttggcctaatccaacccaaggcatggactgtgttcctttctccttgagGGAAGTTGCAAATGCTGCTGGGCCATGGCAGCTGCTGACAACCATCCAGGCTCTGTGGCGCATCAAACACCAGCAG-TTGTGGATGTCTCTGTCCAGGgtaggttaggggttggacatgtgtcgggccaggggacctgctcacctaga Alignment from Pairagon GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAA-CATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG gtttggcctaatccaacccaaggcatggactgtgttcctttctccttgagGGAAGTTGCAAATGCTGCTGGGCCATGGCAGCTGCTGACAACCATCCAGGCTCTGTGGCGCATCAAACACCAGCAG-TTGTGGATGTCTCTGTCCAGGgtaggttaggggttggacatgtgtcgggccaggggacctgctcacctaga Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAAC-ATCCAGGCTCTGTGGCGCATCAAACACCAGCAG---TTTGTGGACGTCTCTGTGCAGG gtttggcctaatccaacccaaggcatggactgtgttcctttctccttgagGGAAGTTGCAAATGCTGCTGGGCCATGGCAGCTGCTGACAACCATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTGTGGATGTCTCTGTCCAGGGTAGgttaggggttggacatgtgtcgggccaggggacctgctcacctaga Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAAC-ATCCAGGCTCTGTGGCGCATCAAACACCAGCAG---TTTGTGGACGTCTCTGTGCAGG gtttggcctaatccaacccaaggcatggactgtgttcctttctccttgagGGAAGTTGCAAATGCTGCTGGGCCATGGCAGCTGCTGACAACCATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTGTGGATGTCTCTGTCCAGGGTAGgttaggggttggacatgtgtcgggccaggggacctgctcacctaga Alignment from GeneWise GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAG--------------------------------------------------- gtttggcctaatccaacccaaggcatggactgtgttcctttctccttgagGGAAGTTGCAAATGCTGCTGGGCCATGGCAGCTGCTGACAACCATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTGTGGATGTCTCTGTCCAGGGTAGGTTAGGGGTTGGACATGTGTCGGGCCAGGGGACCTGCTCACCTAGA #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTG-GCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagagTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGCGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGG-TACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAggtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTG-GCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagagTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGCGCTCAGGCTCAAAGGCTACAGCAAGAAGACT-TGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAggtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGCGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTG-GCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGCGCTCAGGCTCAAAGGCTACAGCAAGAAGACTT-GGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTG-GCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGCGCTCAGGCTCAAAGGCTACAGCAAGAAGACTT-GGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGCGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGCGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGCGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATC-CTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAA-TAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATC-CTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGA-CAATAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAATAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATAT-CCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAA-TAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATAT-CCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAA-TAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATC-CTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACA--ACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAAT---AGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATAT---CCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCAT--ATCCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAAT-AGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAATAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGAC-CATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAG-TTTTGATAAAGCTACTAATGGGATGggtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGAC-CATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAG-TTTTGATAAAGCTACTAATGGGATGggtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGA-CCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTT-GATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGA-CCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAG-TTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGA-CCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGT-TTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttgcttctactccaagatttactgtctactttccccgctttcccccacaggcATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTCGAGGACCGTGTTCAAGAGGAAGCACGTTGTC-TGTGGAGGAACTTCGGAAAACCAATggtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttgcttctactccaagatttactgtctactttccccgctttcccccacaggcATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTCGAGGACCGTGTTCAAGAGGAAGCACGTTGTC-TGTGGAGGAACTTCGGAAAACCAATggtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTCGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTCGAGGACCGTGTTCAAGAGGAAGCACGTTGTC-TGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTCGAGGACCGTGTTCAAGAGGAAGCACGTTGTC-TGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTCGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTCGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTCGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAAT-GGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctacttctactccaggatttactctgtaaaacttttctctctccattcaggcATTGGATTTAGCAATCGGAACTGTATGGAAAAACACGAGGCACTTCTCAC-TATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAAT-GGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctacttctactccaggatttactctgtaaaacttttctctctccattcaggcATTGGATTTAGCAATCGGAACTGTATGGAAAAACACGAGGCACTTCTCAC-TATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcaggcattggatttagCAATCGGAACTGTATGGAAAAACACGAGGCACTTCTCACT-ATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAAT-GGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATCGGAACTGTATGGAAAAACACGAGGCACTTCTCACT-ATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAAT-GGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATCGGAACTGTATGGAAAAACACGAGGCACTTCTCACT-ATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATCGGAACTGTATGGAAAAACACGAGGCACTTCTCACTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATCGGAACTGTATGGAAAAACACGAGGCACTTCTCACTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATCGGAACTGTATGGAAAAACACGAGGCACTTCTCACTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGGTTCAGAC-GAAAAAAAGAAAACGCTCCAAAAAAggtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGGTTCAGA-CGAAAAAAAGAAAACGCTCCAAAAAAggtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGGTTCAGACGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGGTTCAGAC-GAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGGTTCAGAC-GAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGGTTCAGACGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGGTTCAGACGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGGTTCAGACGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag #### Dagla_ID2767_4 --> 2 - 2 Original Alignment gaATGGTCGTCTGCAACTGG-GTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGcg tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcaggaATGGTCGTCTGCAACTGGCGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCT-TGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGcggtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from CESAR gaATGGTCGTCTGCAACTGG-GTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGcg tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcaggaATGGTCGTCTGCAACTGGCGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTG-TCTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGcggtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Spaln_aa2Genome GAATGGTCGTCTGCAACTGG-GTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGcGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTT-GACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Spaln_nt2Genome GAATGGTCGTCTGCAACTGG-GTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGCGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTC-TTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Pairagon GAATGGTCGTCTGCAACTGG-GTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGCGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTC-TTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Exonerate_protein2genome GAATGGTCGTCTGCAACTGG-GTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTC--TTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGCGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTT---GACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Exonerate_coding2genome GAATGGTCGTCTGCAACTGG-GTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTC--TTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGCGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTT---GACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from GeneWise GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTC------CTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGCGTGGTCAT---TCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTT---GACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAA-GCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAACGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCC-GACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAA-GCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAACGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTC-CGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAA-GCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAGAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAcGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCGACTAAAGCAG---TCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAA-GCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAACGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCC-GACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAA-GCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAACGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCC-GACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAACGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAACGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAACGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCA-CTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg ccttggcacccatacttcctactgcttgttcagtgcaatatatattttaggtGTAACATCAAAGCAGATGGCACCTGGTGTTGGATCGGATATGCACCACCC-CATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAggtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from CESAR gtGTAACATCAAAGCAGATGGCA-CTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg ccttggcacccatacttcctactgcttgttcagtgcaatatatattttaggtGTAACATCAAAGCAGATGGCACCTGGTGTTGGATCGGATATGCACCACC-CCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAggtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACCTGGTGTTGGATCGGATATGCACCACCCCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTT-GTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACCTGGTGTTGGATCGGATATGCACCACCC-CATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACTT-GTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACCTGGTGTTGGATCGGATATGCACCACCC-CATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACCTGGTGTTGGATCGGATATGCACCACCCCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Exonerate_coding2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACCTGGTGTTGGATCGGATATGCACCACCCCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACCTGGTGTTGGATCGGATATGCACCACCCCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCA-AAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagatGCTGAAACTACTGCACAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGA-GAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAggtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from CESAR atGCTGAAACTACTGCA-AAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagatGCTGAAACTACTGCACAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGA-GAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAggtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCA-AAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCAcAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGAG-AAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCA-AAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCACAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACT-GGGAGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Pairagon ATGCTGAAACTACTGCA-AAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCACAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGA-GAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCACAAAGCCTGGCCTAT---GGCCAAGGTCTCTGTGACTGGGAGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Exonerate_coding2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCACAAAGCCTGGC--CTATGGCCAAGGTCTCTGTGACTGGGA-GAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from GeneWise ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCACAAAGCCTGGCCTAT---GGCCAAGGTCTCTGTGACTGGGAGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg tactttaggttaaaactccagtgaggatactccttttgggtctctcctagagATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTC-TTTCTACTTCGGGCTCAATATCGAGACAggtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg tactttaggttaaaactccagtgaggatactccttttgggtctctcctagagATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTC-TTTCTACTTCGGGCTCAATATCGAGACAggtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTcAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCT-TTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTT-CTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTC-TTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAG---CCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGT--CAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCT-TTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAAC-CTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag cagctcttgccctgttttctttccttcttgaaatctctcttctggtgcaggtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCTCAAGGAGGTGAACTATATGTGTCCTCTCAACT-AGATGGCTATCCTGACaggtaagtctgctttctgtcttaagcaggagtcactaactggagactgcttg Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAAC-CTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag cagctcttgccctgttttctttccttcttgaaatctctcttctggtgcaggtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCTCAAGGAGGTGAACTATATGTGTCCTCTCAAC-TAGATGGCTATCCTGACaggtaagtctgctttctgtcttaagcaggagtcactaactggagactgcttg Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAAC-CTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttgaaatctctcttctggtgcagGTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACcCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTA-GATGGCTATCCTGACAGgtaagtctgctttctgtcttaagcaggagtcactaactggagactgcttg Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAA-CCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttgaaatctctcttctggtgcagGTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCTCAAGGAGGTGAACTATATGTGTCCTCTCAACT-AGATGGCTATCCTGACAGgtaagtctgctttctgtcttaagcaggagtcactaactggagactgcttg Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAA-CCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttgaaatctctcttctggtgcagGTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCTCAAGGAGGTGAACTATATGTGTCCTCTCAACT-AGATGGCTATCCTGACAGgtaagtctgctttctgtcttaagcaggagtcactaactggagactgcttg Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAAC-CTCAAGGAGGTGAACTATATGTGTCCTCTCAAC--TCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttgaaatctctcttctggtgcagGTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTA---GATGGCTATCCTGACAGgtaagtctgctttctgtcttaagcaggagtcactaactggagactgcttg Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAAC-CTCAAGGAGGTGAACTATATGTGTCCTCTCAAC--TCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttgaaatctctcttctggtgcagGTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTA---GATGGCTATCCTGACAGgtaagtctgctttctgtcttaagcaggagtcactaactggagactgcttg Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttgaaatctctcttctggtgcagGTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTAGATGGCTATCCTGACAGgtaagtctgctttctgtcttaagcaggagtcactaactggagactgcttg #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTC-AATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aggacttcttagggagaagggttcaggaattaatcatatctgacttttagtGCTGCAACCACTGATGAGGAGCGGCAGCATCTACAGGAGATTGGTCTCTTCCACCTGGGCGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGG-TGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATGGCATGATAggtatgcgtcattcctgttgagcacactcagctgcagccacctcacccctg Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTC-AATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aggacttcttagggagaagggttcaggaattaatcatatctgacttttagtGCTGCAACCACTGATGAGGAGCGGCAGCATCTACAGGAGATTGGTCTCTTCCACCTGGGCGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATC-TGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATGGCATGATAggtatgcgtcattcctgttgagcacactcagctgcagccacctcacccctg Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTC-AATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaattaatcatatctgacttttagTGCTGCAACCACTGATGAGGAGCGGCAGCATCTACAGGAGATTGGTCTCTTCCACCTGGGCGAGTTTGTCcAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCT-GGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATGGCATGATAGgtatgcgtcattcctgttgagcacactcagctgcagccacctcacccctg Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGT-CAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaattaatcatatctgacttttagTGCTGCAACCACTGATGAGGAGCGGCAGCATCTACAGGAGATTGGTCTCTTCCACCTGGGCGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCT-GGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATGGCATGATAGgtatgcgtcattcctgttgagcacactcagctgcagccacctcacccctg Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGT-CAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaattaatcatatctgacttttagTGCTGCAACCACTGATGAGGAGCGGCAGCATCTACAGGAGATTGGTCTCTTCCACCTGGGCGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCT-GGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATGGCATGATAGgtatgcgtcattcctgttgagcacactcagctgcagccacctcacccctg Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTC-AATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAAT--CTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaattaatcatatctgacttttagTGCTGCAACCACTGATGAGGAGCGGCAGCATCTACAGGAGATTGGTCTCTTCCACCTGGGCGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCT---GGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATGGCATGATAGgtatgcgtcattcctgttgagcacactcagctgcagccacctcacccctg Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGT---CAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaattaatcatatctgacttttagTGCTGCAACCACTGATGAGGAGCGGCAGCATCTACAGGAGATTGGTCTCTTCCACCTGGGCGAGTTT--GTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCT-GGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATGGCATGATAGgtatgcgtcattcctgttgagcacactcagctgcagccacctcacccctg Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTT-GTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaattaatcatatctgacttttagTGCTGCAACCACTGATGAGGAGCGGCAGCATCTACAGGAGATTGGTCTCTTCCACCTGGGCGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCT-GGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATGGCATGATAGgtatgcgtcattcctgttgagcacactcagctgcagccacctcacccctg #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGAC-CACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg acttctcctgtcatggctattagcagcactcaatgccattgtttccctaggaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCTTGGTAATGACCCACAATGCCGCTGCGGGGGATGGATATCCCAGAA-AACCACACTGGCTTCAAAGATATATCACACCAAAggcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGAC-CACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg acttctcctgtcatggctattagcagcactcaatgccattgtttccctaggaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCTTGGTAATGACCCACAATGCCGCTGCGGGGGATGGATATCCCA-GAAAACCACACTGGCTTCAAAGATATATCACACCAAAggcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCTTGGTAATGACCCACAATGCCGCTGCGGGGGATGGATATCCCAGAAAACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGAC-CACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCTTGGTAATGACCCACAATGCCGCTGCGGGGGATGGATATCCCAGAAA-ACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGA-CCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCTTGGTAATGACCCACAATGCCGCTGCGGGGGATGGATATCCCAGAA-AACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCTTGGTAATGACCCACAATGCCGCTGCGGGGGATGGATATCCCAGAAAACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCTTGGTAATGACCCACAATGCCGCTGCGGGGGATGGATATCCCAGAAAACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from GeneWise -------------------------------------TACTGCAAAAATGGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAGGA-- ACTTCTCCTGTCATGGCTATTAGCAGCACTCAATGCCATTGTTTCCCTAGGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCTTGGTAATGACCCACAATGCCGCTGCGGGGGATGGATATCCCAGAAAACCACACTGGCTTCAAAGATATATCACACCAAAGGCATgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAA-ATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGC-AGTGTCCTGTTCTGACTGTGGCCGCTCAggtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAA-ATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAG-CAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTC-AAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGC-AGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAA-ATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGC-AGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct #### Dpp3_ID739_14 --> 1 - 0 Original Alignment gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGG-CTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcaggATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACA-CCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from CESAR gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGG-CTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcaggATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACA-CCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Spaln_aa2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGG-CTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGcCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACAC-CCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Spaln_nt2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGG-CTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCC-AGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Pairagon GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGG-CTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACA-CCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Exonerate_protein2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Exonerate_coding2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGG-CTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACC-CAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from GeneWise GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagacGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAA-GCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagacGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCG-CAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGcAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGC-AAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGC-AAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGC-AAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAA---TGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAG--CAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGC-AAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg #### Dpp3_ID744_9 --> 2 - 1 Original Alignment gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTG-CTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaaggcTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCG-GAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCAGGCATCAACATCCCCAACtgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from CESAR gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTG-CTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaaggcTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCCTGAAGGAGCTGCCCTGGCCTCTTGCCTTC-GGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCAGGCATCAACATCCCCAACtgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Spaln_aa2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Spaln_nt2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTG-CTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCG-GAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Pairagon GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTG-CTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCG-GAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Exonerate_protein2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Exonerate_coding2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from GeneWise --TTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCT-CAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag tggacagcaaaggtaaatggtccagggtctatgtttgcctctttctgcagGCTTACGCAGCCAACAGCCACCAGAAGCAAATGCTGGCCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCA-TGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGaggtaagctgccagcccctgtttcccctcccccaacccccctccaatgcctt Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCT-CAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag tggacagcaaaggtaaatggtccagggtctatgtttgcctctttctgcagGCTTACGCAGCCAACAGCCACCAGAAGCAAATGCTGGCCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCA-TGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGaggtaagctgccagcccctgtttcccctcccccaacccccctccaatgcctt Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tggacagcaaaggtaaatggtccagggtctatgtttgcctctttctgcagGCTTACGCAGCCAACAGCCACCAGAAGCAAATGCTGGCCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagctgccagcccctgtttcccctcccccaacccccctccaatgcctt Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCT-CAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tggacagcaaaggtaaatggtccagggtctatgtttgcctctttctgcagGCTTACGCAGCCAACAGCCACCAGAAGCAAATGCTGGCCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCA-TGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagctgccagcccctgtttcccctcccccaacccccctccaatgcctt Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGG-CTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tggacagcaaaggtaaatggtccagggtctatgtttgcctctttctgcagGCTTACGCAGCCAACAGCCACCAGAAGCAAATGCTGGCCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCA-TGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagctgccagcccctgtttcccctcccccaacccccctccaatgcctt Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tggacagcaaaggtaaatggtccagggtctatgtttgcctctttctgcagGCTTACGCAGCCAACAGCCACCAGAAGCAAATGCTGGCCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagctgccagcccctgtttcccctcccccaacccccctccaatgcctt Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tggacagcaaaggtaaatggtccagggtctatgtttgcctctttctgcagGCTTACGCAGCCAACAGCCACCAGAAGCAAATGCTGGCCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagctgccagcccctgtttcccctcccccaacccccctccaatgcctt Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tggacagcaaaggtaaatggtccagggtctatgtttgcctctttctgcagGCTTACGCAGCCAACAGCCACCAGAAGCAAATGCTGGCCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagctgccagcccctgtttcccctcccccaacccccctccaatgcctt #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTC-TTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggggtgggactgcagcactccgctttttggcttctgtccctcccttgcagccCGGGCCCTTGAGCTCCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCC-GTCTCGAAATGCAAAGACCATGACCACATCCCACctgtaagtggctgccaagctgggggggcttttgggggggcagaattccgaca Alignment from CESAR ccCGGGCCCTTGAGCTC-TTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggggtgggactgcagcactccgctttttggcttctgtccctcccttgcagccCGGGCCCTTGAGCTCCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACC-CGTCTCGAAATGCAAAGACCATGACCACATCCCACctgtaagtggctgccaagctgggggggcttttgggggggcagaattccgaca Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTC-TTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactgcagcactccgctttttggcttctgtccctcccttgcagCCCGGGCCCTTGAGCTCcTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCG-TCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagtggctgccaagctgggggggcttttgggggggcagaattccgaca Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCT-CTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactgcagcactccgctttttggcttctgtccctcccttgcagCCCGGGCCCTTGAGCTCCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCC-GTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagtggctgccaagctgggggggcttttgggggggcagaattccgaca Alignment from Pairagon CCCGGGCCCTTGAGCT-CTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactgcagcactccgctttttggcttctgtccctcccttgcagCCCGGGCCCTTGAGCTCCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCC-GTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagtggctgccaagctgggggggcttttgggggggcagaattccgaca Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTC-TTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACC--CAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactgcagcactccgctttttggcttctgtccctcccttgcagCCCGGGCCCTTGAGCTCCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCG---TCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagtggctgccaagctgggggggcttttgggggggcagaattccgaca Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCT-CTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactgcagcactccgctttttggcttctgtccctcccttgcagCCCGGGCCCTTGAGCTCCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCG-TCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagtggctgccaagctgggggggcttttgggggggcagaattccgaca Alignment from GeneWise GGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactgcagcactccgctttttggcttctgtccctcccttgcagcccgggcccttgagCTCC---------TTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCG-TCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagtggctgccaagctgggggggcttttgggggggcagaattccgaca #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATC-ATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tccatgtgttggggatgcaagaatgagcagccacaactcctccccaatagACGCGGATCAAAAAGATCCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGG-AGCTGTGCCTGTCATCATCtgtatgttactaggggccagttgggctgaggggcgtggggtgggactgcag Alignment from CESAR GCGCGGATCAAAAAGATC-ATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tccatgtgttggggatgcaagaatgagcagccacaactcctccccaatagACGCGGATCAAAAAGATCCATGCAGACGGACGAAGAGATTGGGAAGGTGGCG-GAGCTGTGCCTGTCATCATCtgtatgttactaggggccagttgggctgaggggcgtggggtgggactgcag Alignment from Spaln_aa2Genome C---------AAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgagcagccacaactcctccccaatagACGCGGATCAAAAAGATCCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGA-GCTGTGCCTGTCATCATCTgtatgttactaggggccagttgggctgaggggcgtggggtgggactgcag Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGAT-CATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgagcagccacaactcctccccaatagACGCGGATCAAAAAGATCCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGG-AGCTGTGCCTGTCATCATCTgtatgttactaggggccagttgggctgaggggcgtggggtgggactgcag Alignment from Pairagon GCGCGGATCAAAAAGAT-CATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgagcagccacaactcctccccaatagACGCGGATCAAAAAGATCCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGG-AGCTGTGCCTGTCATCATCTgtatgttactaggggccagttgggctgaggggcgtggggtgggactgcag Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgagcagccacaactcctccccaatagACGCGGATCAAAAAGATCCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGAGCTGTGCCTGTCATCATCTgtatgttactaggggccagttgggctgaggggcgtggggtgggactgcag Alignment from Exonerate_coding2genome GCGCGGATCAAAAAGAT---CATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgagcagccacaactcctccccaatagACGCGGATCAAAAAG--ATCCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGA-GCTGTGCCTGTCATCATCTgtatgttactaggggccagttgggctgaggggcgtggggtgggactgcag Alignment from GeneWise tccatgtgttggggatgcaagaatgagcagccacaactcctccccaatagacgcggatcaaaaagatccatgcagacggacgaagagattgggaaggtggcggagctgtgcctgtcatcatctgtatgttactaggggccagttgggctgaggggcgtggggtgggactgcag #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCG-GCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagtaAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGCGCAGCTCAGGTGGTGCAGTGGGTCAGCT-TGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCG-GCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagtaAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGCGCAGCTCAGGTGGTGCAGTGGGTCA-GCTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGCGCAGCTCAGGTGGTGCAGTGGGTCAGCTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCG-GCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGCGCAGCTCAGGTGGTGCAGTGGGTCAGC-TTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCG-GCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGCGCAGCTCAGGTGGTGCAGTGGGTCAGC-TTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGCGCAGCTCAGGTGGTGCAGTGGGTCAGCTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGCGCAGCTCAGGTGGTGCAGTGGGTCAGCTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGCGCAGCTCAGGTGGTGCAGTGGGTCAGCTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGC-AGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtaatatgattccagagactggataaggtgtattttttctttgtctcaggaATGTTTCAGCGACTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACTAACAACAGCCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAG-CCAAGAGCTAGCCTTTCCAgtgaggaaggtgctgtggggagagagatcataatgggaaactaggggttt Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGC-AGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtaatatgattccagagactggataaggtgtattttttctttgtctcaggaATGTTTCAGCGACTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACTAACAACAGCCAGCTCCATTTCTGGTGTTTGGGTCTTTC-GAGCCAAGAGCTAGCCTTTCCAgtgaggaaggtgctgtggggagagagatcataatgggaaactaggggttt Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGC-AGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtaatatgattccagagactggataaggtgtattttttctttgtctcagGAATGTTTCAGCGACTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACTAACAACAGCcAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGC-CAAGAGCTAGCCTTTCCAgtgaggaaggtgctgtggggagagagatcataatgggaaactaggggttt Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAG-CAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtaatatgattccagagactggataaggtgtattttttctttgtctcagGAATGTTTCAGCGACTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACTAACAACAGCCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAG-CCAAGAGCTAGCCTTTCCAgtgaggaaggtgctgtggggagagagatcataatgggaaactaggggttt Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAG-CAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtaatatgattccagagactggataaggtgtattttttctttgtctcagGAATGTTTCAGCGACTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACTAACAACAGCCAGCTCCATTTCTGGTGTTTGGGTCTTTCGA-GCCAAGAGCTAGCCTTTCCAgtgaggaaggtgctgtggggagagagatcataatgggaaactaggggttt Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtaatatgattccagagactggataaggtgtattttttctttgtctcagGAATGTTTCAGCGACTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACTAACAACAGCCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGCCAAGAGCTAGCCTTTCCAgtgaggaaggtgctgtggggagagagatcataatgggaaactaggggttt Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtaatatgattccagagactggataaggtgtattttttctttgtctcagGAATGTTTCAGCGACTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACTAACAACAGCCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGCCAAGAGCTAGCCTTTCCAgtgaggaaggtgctgtggggagagagatcataatgggaaactaggggttt Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggtaatatgattccagagactggataaggtgtattttttctttgtctcagGAATGTTTCAGCGACTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACTAACAACAGCCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGCCAAGAGCTAGCCTTTCCAgtgaggaaggtgctgtggggagagagatcataatgggaaactaggggttt #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagaaTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGG-TGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGatgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagaaTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGG-GTGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGatgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAAcCTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGT-GAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAAC-TCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGG-TGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGG-TGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGG--GATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGT---GAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGG-GTGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGTGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTG-GAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg tggcctggggtgaggtcacctgtcctcttttctcctcttccctatgctagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCTGCAAGCCCTGCGAGCAGGAACAGGGACAGGTAGATGGCAGGG-TGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAggtaagacccctgacttttggtttcgctccttgacagcctcgtccctaaat Alignment from CESAR CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTG-GAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg tggcctggggtgaggtcacctgtcctcttttctcctcttccctatgctagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCTGCAAGCCCTGCGAGCAGGAACAGGGACAGGTAGATGGCAGG-GTGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAggtaagacccctgacttttggtttcgctccttgacagcctcgtccctaaat Alignment from Spaln_aa2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tggcctggggtgaggtcacctgtcctcttttctcctcttccctatgctagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCTGCAAGCCCTGCGAGCAGGAACAGGGACAGGTAGATGGCAGGGTGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAGgtaagacccctgacttttggtttcgctccttgacagcctcgtccctaaat Alignment from Spaln_nt2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTG-GAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tggcctggggtgaggtcacctgtcctcttttctcctcttccctatgctagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCTGCAAGCCCTGCGAGCAGGAACAGGGACAGGTAGATGGCAGGG-TGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAGgtaagacccctgacttttggtttcgctccttgacagcctcgtccctaaat Alignment from Pairagon CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTG-GAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tggcctggggtgaggtcacctgtcctcttttctcctcttccctatgctagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCTGCAAGCCCTGCGAGCAGGAACAGGGACAGGTAGATGGCAGGG-TGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAGgtaagacccctgacttttggtttcgctccttgacagcctcgtccctaaat Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tggcctggggtgaggtcacctgtcctcttttctcctcttccctatgctagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCTGCAAGCCCTGCGAGCAGGAACAGGGACAGGTAGATGGCAGGGTGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAGgtaagacccctgacttttggtttcgctccttgacagcctcgtccctaaat Alignment from Exonerate_coding2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTG-GAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tggcctggggtgaggtcacctgtcctcttttctcctcttccctatgctagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCTGCAAGCCCTGCGAGCAGGAACAGGGACAGGTAGATGGCAGGGTG-CTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAGgtaagacccctgacttttggtttcgctccttgacagcctcgtccctaaat Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG tggcctggggtgaggtcacctgtcctcttttctcctcttccctatgctagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCTGCAAGCCCTGCGAGCAGGAACAGGGACAGGTAGATGGCAGGGTGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAGgtaagacccctgacttttggtttcgctccttgacagcctcgtccctaaat #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTC-AGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCC-AGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGatgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from CESAR GCACCACCTACCCTGGTC-AGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCC-AGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGatgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTC-AGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCC-AGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Pairagon GCACCACCTACCCTGGT-CAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCC-AGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGC-CAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gactggacctatgtcacaatgcccccggatctgtatttctttcctggtagctGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCTTTCCGGGGCCCAGGGGTCAGAACCAGCTGCCATAACCGATGGCC-GGTAGGGCCTGAAACCCCAGAGCCCCCACCATCTCCACCAGAGACAaggtaagaataatatcagcttcaatgctgttagaagaggataccacacatcc Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGC-CAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gactggacctatgtcacaatgcccccggatctgtatttctttcctggtagctGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCTTTCCGGGGCCCAGGGGTCAGAACCAGCTGCCATAACCGATGGC-CGGTAGGGCCTGAAACCCCAGAGCCCCCACCATCTCCACCAGAGACAaggtaagaataatatcagcttcaatgctgttagaagaggataccacacatcc Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gactggacctatgtcacaatgcccccggatctgtatttctttcctggtagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCTTTCCGGGGCCCAGGGGTCAGAACCAGCTGCCATAACCGATGGCCGGTAGGGCCTGAAACCCCAGAGCCCCCACCATCTCCACCAGAGACAAGgtaagaataatatcagcttcaatgctgttagaagaggataccacacatcc Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGC-CAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gactggacctatgtcacaatgcccccggatctgtatttctttcctggtagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCTTTCCGGGGCCCAGGGGTCAGAACCAGCTGCCATAACCGATGGCC-GGTAGGGCCTGAAACCCCAGAGCCCCCACCATCTCCACCAGAGACAAGgtaagaataatatcagcttcaatgctgttagaagaggataccacacatcc Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGG-CCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gactggacctatgtcacaatgcccccggatctgtatttctttcctggtagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCTTTCCGGGGCCCAGGGGTCAGAACCAGCTGCCATAACCGATGGCC-GGTAGGGCCTGAAACCCCAGAGCCCCCACCATCTCCACCAGAGACAAGgtaagaataatatcagcttcaatgctgttagaagaggataccacacatcc Alignment from Exonerate_protein2genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gactggacctatgtcacaatgcccccggatctgtatttctttcctggtagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCTTTCCGGGGCCCAGGGGTCAGAACCAGCTGCCATAACCGATGGCCGGTAGGGCCTGAAACCCCAGAGCCCCCACCATCTCCACCAGAGACAAGgtaagaataatatcagcttcaatgctgttagaagaggataccacacatcc Alignment from Exonerate_coding2genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gactggacctatgtcacaatgcccccggatctgtatttctttcctggtagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCTTTCCGGGGCCCAGGGGTCAGAACCAGCTGCCATAACCGATGGCCGGTAGGGCCTGAAACCCCAGAGCCCCCACCATCTCCACCAGAGACAAGgtaagaataatatcagcttcaatgctgttagaagaggataccacacatcc Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gactggacctatgtcacaatgcccccggatctgtatttctttcctggtagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCTTTCCGGGGCCCAGGGGTCAGAACCAGCTGCCATAACCGATGGCCGGTAGGGCCTGAAACCCCAGAGCCCCCACCATCTCCACCAGAGACAAGgtaagaataatatcagcttcaatgctgttagaagaggataccacacatcc #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTA-GCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTACGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTC-ACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCacgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTA-GCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTACGCCCATCATGCAGGGCCTGTACCTGCCCAGG-TTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCacgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTACGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTA-GCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTACGCCCATCATGCAGGGCCTGTACCTGCCCAGGTT-CACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTA-GCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTACGCCCATCATGCAGGGCCTGTACCTGCCCAGGTT-CACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Exonerate_protein2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTA-GCCCACCATGCAGGGCCTGTGCCTGCTCAGGTT--CCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTACGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCA---CTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Exonerate_coding2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTA-GCCCACCATGCAGGGCCTGTGCCTGCTCAGGTT--CCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTACGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCA---CTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTACGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGC-ATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCCATTCAGAATCCATACCGTGGCACTGCGGTAT-GATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from CESAR GCCCACAGCTGGCAGCCTGGC-ATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCCATTCAGAATCCATACCGTGGCACTGCGGTA-TGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCCATTCAGAATCCATACCGTGGCACTGCGGTATGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGG-CATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCCATTCAGAATCCATACCGTGGCACTGCGGTAT-GATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Pairagon GCCCACAGCTGGCAGCCTGG-CATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCCATTCAGAATCCATACCGTGGCACTGCGGTAT-GATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Exonerate_protein2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCCATTCAGAATCCATACCGTGGCACTGCGGTATGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Exonerate_coding2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCCATTCAGAATCCATACCGTGGCACTGCGGTATGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCCATTCAGAATCCATACCGTGGCACTGCGGTATGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCT-GAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagggGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCC-CTCCCTACAGAAGGAGGGTCACtggtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCT-GAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagggGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTCTTTTGTGCTCTGCAAGAACCATGTC-CCTCCCTACAGAAGGAGGGTCACtggtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCT-GAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCC-CTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCT-GAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCC-CTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGC-TGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCC-TCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATG-GCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGCGCCAAACAGGTAGAACAGCTGGAGAAAGAAA-AAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATG-GCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGCGCCAAACAGGTAGAACAGCTGGAGAAAG-AAAAAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGCGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATG-GCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGCGCCAAACAGGTAGAACAGCTGGAGAAAG-AAAAAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATG-GCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGCGCCAAACAGGTAGAACAGCTGGAGAAAGAAAA-AAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGCGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGCGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGCGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCA-GTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG cattcagttgtaatatatgcttggatatcacttcctgctccctgttccagGTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCACGTTGGCCCTCATCTGCAGGGCATGCCTTCGGAGCAGA-AAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCACACATTCTGgtatgagtcttgaagagagatgatctacaaaaactttattatctttcaca Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCA-GTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG cattcagttgtaatatatgcttggatatcacttcctgctccctgttccagGTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCACGTTGGCCCTCATCTGCAGGGCATGCCTTCGGAGCAG-AAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCACACATTCTGgtatgagtcttgaagagagatgatctacaaaaactttattatctttcaca Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG cattcagttgtaatatatgcttggatatcacttcctgctccctgttccagGTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCACGTTGGCCCTCATCTGCAGGGCATGCCTTCGGAGCAGAAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCACACATTCTGgtatgagtcttgaagagagatgatctacaaaaactttattatctttcaca Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCA-GTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG cattcagttgtaatatatgcttggatatcacttcctgctccctgttccagGTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCACGTTGGCCCTCATCTGCAGGGCATGCCTTCGGAGCAGA-AAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCACACATTCTGgtatgagtcttgaagagagatgatctacaaaaactttattatctttcaca Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCA-GTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG cattcagttgtaatatatgcttggatatcacttcctgctccctgttccagGTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCACGTTGGCCCTCATCTGCAGGGCATGCCTTCGGAGCAGA-AAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCACACATTCTGgtatgagtcttgaagagagatgatctacaaaaactttattatctttcaca Alignment from Exonerate_protein2genome cattcagttgtaatatatgcttggatatcacttcctgctccctgttccaggtacgtattgaccatacttcccggactctgagttttggatcagatttgaattatgcaactcgagaagatgccccacgttggccctcatctgcagggcatgccttcggagcagaaagaaaccagctcacggccatgtcctcagtgcttgccaaagcacttgaagtcatcagacctgcacacattctggtatgagtcttgaagagagatgatctacaaaaactttattatctttcaca Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCA-GTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG cattcagttgtaatatatgcttggatatcacttcctgctccctgttccagGTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCACGTTGGCCCTCATCTGCAGGGCATGCCTTCGGAGCAGAAA-GAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCACACATTCTGgtatgagtcttgaagagagatgatctacaaaaactttattatctttcaca Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG cattcagttgtaatatatgcttggatatcacttcctgctccctgttccagGTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCACGTTGGCCCTCATCTGCAGGGCATGCCTTCGGAGCAGAAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCACACATTCTGgtatgagtcttgaagagagatgatctacaaaaactttattatctttcaca #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTCAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAG-TCTGGATAATATTCAGACTCCTGAGaggtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTCAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAA-GTCTGGATAATATTCAGACTCCTGAGaggtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTCAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGTCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTCAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAG-TCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTCAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAG-TCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Exonerate_protein2genome gttgtccctcttaaggtaaacattaaatcactggcatttctactctccaggtaaacattaaatctttagaagatgttgttagggcatatttgaaattagcagaggaaaaaacagaagctgctcaaagaagagtcccaacaaatggtgttagatatagaagtctggataatattcagactcctgagaggtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTCAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGTCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTCAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGTCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGT-GGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagcAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTCGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGG-AGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACacgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGT-GGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagcAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTCGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGG-GAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACacgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTCGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGG-ACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTCGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGG-AGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGG-ACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTCGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGG-AGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTCGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTCGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from GeneWise ------------------------------------------------AGCAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC CTCATTCTGCCTTCCTGGGAGCTTTGGGTCCCTGCCTCCTCCTCCCTAAGCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTCGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGT-CGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg acttcctgtccttcatctggccctttccttttgccttttcttcttctcagtTATGGGTACAGGGGTCCGCGATTCTCGCTCAAATCTATTTGTGCTGCGCT-TGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCGGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGAtggtaaggatcttggggtttggggctggtgggcttgacacaaagagggtagg Alignment from CESAR tTATGGGTACAGGGGT-CGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg acttcctgtccttcatctggccctttccttttgccttttcttcttctcagtTATGGGTACAGGGGTCCGCGATTCTCGCTCAAATCTATTTGTGCTGCGC-TTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCGGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGAtggtaaggatcttggggtttggggctggtgggcttgacacaaagagggtagg Alignment from Spaln_aa2Genome TTATGGGTACAGGGGT-CGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG acttcctgtccttcatctggccctttccttttgccttttcttcttctcagTTATGGGTACAGGGGTcCGCGATTCTCGCTCAAATCTATTTGTGCTGCGCTT-GGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCGGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGATGgtaaggatcttggggtttggggctggtgggcttgacacaaagagggtagg Alignment from Spaln_nt2Genome TTATGGGTACAGGGGT-CGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG acttcctgtccttcatctggccctttccttttgccttttcttcttctcagTTATGGGTACAGGGGTCCGCGATTCTCGCTCAAATCTATTTGTGCTGCGCT-TGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCGGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGATGgtaaggatcttggggtttggggctggtgggcttgacacaaagagggtagg Alignment from Pairagon TTATGGGTACAGGGGT-CGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG acttcctgtccttcatctggccctttccttttgccttttcttcttctcagTTATGGGTACAGGGGTCCGCGATTCTCGCTCAAATCTATTTGTGCTGCGCT-TGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCGGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGATGgtaaggatcttggggtttggggctggtgggcttgacacaaagagggtagg Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG acttcctgtccttcatctggccctttccttttgccttttcttcttctcagTTATGGGTACAGGGGTCCGCGATTCTCGCTCAAATCTATTTGTGCTGCGCTTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCGGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGATGgtaaggatcttggggtttggggctggtgggcttgacacaaagagggtagg Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG acttcctgtccttcatctggccctttccttttgccttttcttcttctcagTTATGGGTACAGGGGTCCGCGATTCTCGCTCAAATCTATTTGTGCTGCGCTTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCGGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGATGgtaaggatcttggggtttggggctggtgggcttgacacaaagagggtagg Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG acttcctgtccttcatctggccctttccttttgccttttcttcttctcagTTATGGGTACAGGGGTCCGCGATTCTCGCTCAAATCTATTTGTGCTGCGCTTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCGGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGATGgtaaggatcttggggtttggggctggtgggcttgacacaaagagggtagg #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTA-AAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGCAAACTGCAGGAGATTGGACTGGGTGCCTTTG-GCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTA-AAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGCAAACTGCAGGAGATTGGACTGGGTGCCTTT-GGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGCAAACTGCAGGAGATTGGACTGGGTGCCTTTGGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTA-AAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGCAAACTGCAGGAGATTGGACTGGGTGCC-TTTGGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTA-AAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGCAAACTGCAGGAGATTGGACTGGGTGCCTTTG-GCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGCAAACTGCAGGAGATTGGACTGGGTGCCTTTGGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGCAAACTGCAGGAGATTGGACTGGGTGCCTTTGGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGCAAACTGCAGGAGATTGGACTGGGTGCCTTTGGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATC-CTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGG-TCGAAGTGTCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAggtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATC-CTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCCTAACTGGAGATTCCGAGGGGAACATTCTTACCT-GGGTCGAAGTGTCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAggtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGTCGAAGTGTCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACAT-CCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCCTAACTGGAGATTCCGAGGGGAACATTCTTACCT-GGGTCGAAGTGTCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACAT-CCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCCTAACTGGAGATTCCGAGGGGAACATTCTTACCT-GGGTCGAAGTGTCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGTCGAAGTGTCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACAT---CCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGAC--ATCCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTG-GGTCGAAGTGTCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGTCGAAGTGTCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAG-AATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCTC-AGGTTTCTCCCCTGTTATCCAGgtaagtgctgtggcctgtctcttcttctccagGGACACACTGACGAGCTC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAG-AATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCTC-AGGTTTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCTCAGGTTTCTCCCCTGTTATCCAGGTAAGTGCTGTGGCCTGTCTCTTCTTCtcCAGGGACACACTGACGAGCTC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCAC-AAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTA--------------------------------TCCAGGGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCTCA-GGTTTCTCCCCTGTTATCCAGGTAAGTGCTGTGGCCTGTCTCTTCTTCTCCAGGGACACACTGACGAGCTC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAG-AATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCTC-AGGTTTCTCCCCTGTTATCCAGgtaagtgctgtggcctgtctcttcttctccagGGACACACTGACGAGCTC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCTCAGGTTTCTCCCCTGTTATCCAGgtaagtgctgtggcctgtctcttcttctccagGGACACACTGACGAGCTC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCTCAGGTTTCTCCCCTGTTATCCAGgtaagtgctgtggcctgtctcttcttctccagGGACACACTGACGAGCTC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCTCAGGTTTCTCCCCTGTTATCCAGgtaagtgctgtggcctgtctcttcttctccagGGACACACTGACGAGCTC #### Eml3_ID2516_15 --> 0 - 0 Original Alignment TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGG-CAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagggctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGGGAAGGCCACG-ACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from CESAR TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGG-CAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGGGAAGGCCAC-GACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Spaln_aa2Genome TTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGGTAAGGGCTGTCCTCCCTGTGCACCCCtgCAGGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGGGAAGGCCACGACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Spaln_nt2Genome TTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGC-AGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGGTAAGGGCTGTCCTCCCTGTGCACCCCTGCAGGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGGGAAGGCCACG-ACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Pairagon TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGG-CAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagggctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGGGAAGGCCACG-ACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Exonerate_protein2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGG-CAGCTCTGCCTGTGGGATGGGGAAGGCCAT--GCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagggctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGGGAAGGCCACGA---CTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Exonerate_coding2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGG-CAGCTCTGCCTGTGGGATGGGGAAGGCCAT--GCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagggctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGGGAAGGCCACGA---CTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from GeneWise TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagggctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGGGAAGGCCACGACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTC-TATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCCTATGCCCGCATCTTCTTTACTTACATGTCAC-GCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCaggttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTC-TATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCCTATGCCCGCATCTTCTTTACTTACATGTCA-CGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCaggttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCCTATGCCCGCATCTTCTTTACTTACATGTCACGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTT-CTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCCTATGCCCGCATCTTCTTTACTTACATGTCAC-GCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTT-CTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCCTATGCCCGCATCTTCTTTACTTACATGTCAC-GCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCCTATGCCCGCATCTTCTTTACTTACATGTCACGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCCTATGCCCGCATCTTCTTTACTTACATGTCACGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAGG-- gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCCTATGCCCGCATCTTCTTTACTTACATGTCACGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGGTTgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctaggTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACA-TGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctaggTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACA-TGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACAT-GATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACA-TGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATG--CACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACAT---GATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTG---GGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTT--GTGCTGGGTGACACAGATGAACCATATCCCCATGCACAT-GATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCCAATCCGCCTTCAACAACTGGTTCAGTGGACACC-AAATTTCCAGATTGAACACcagtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from CESAR CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCCAATCCGCCTTCAACAACTGGTTCAGTGGACAC-CAAATTTCCAGATTGAACACcagtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACcCAATCCGCCTTCAACAACTGGTTCAGTGGACACCA-AATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCA-ATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCCAATCCGCCTTCAACAACTGGTTCAGTGGACACCA-AATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCA-CCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCCAATCCGCCTTCAACAACTGGTTCAGTGGACACC-AAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCAC--CTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCCAATCCGCCTTCAACAACTGGTTCAGTGGACACCA---AATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCCAATCCGCCTTCAACAACTGGTTCAGTGGACACCAA-ATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCCAATCCGCCTTCAACAACTGGTTCAGTGGACACCAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAAC-TACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta ggggatggatagggaagcagaagccaccctgactcacctctctttggtagcCTCTTCCCCACCATGCCGCGACACAACCTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCA-GTACGGCATCAAGTATGAGTCCAAGCCCCTGCTTGCAGCCTTCGCAGACATTGTTtagtgagtatgaacctgggaagctggcagtcagaagtaaagccacagtgatc Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAAC-TACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta ggggatggatagggaagcagaagccaccctgactcacctctctttggtagcCTCTTCCCCACCATGCCGCGACACAACCTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCG-CCAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTTGCAGCCTTCGCAGACATTGTTtagtgagtatgaacctgggaagctggcagtcagaagtaaagccacagtgatc Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAAC-TACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA ggggatggatagggaagcagaagccaccctgactcacctctctttggtagCCTCTTCCCCACCATGCCGCGACACAACcTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGC-CAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtgagtatgaacctgggaagctggcagtcagaagtaaagccacagtgatc Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAAC-TACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA ggggatggatagggaagcagaagccaccctgactcacctctctttggtagCCTCTTCCCCACCATGCCGCGACACAACCTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtgagtatgaacctgggaagctggcagtcagaagtaaagccacagtgatc Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAA-CTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA ggggatggatagggaagcagaagccaccctgactcacctctctttggtagCCTCTTCCCCACCATGCCGCGACACAACCTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtgagtatgaacctgggaagctggcagtcagaagtaaagccacagtgatc Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAAC-TACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC--AAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA ggggatggatagggaagcagaagccaccctgactcacctctctttggtagCCTCTTCCCCACCATGCCGCGACACAACCTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAG---TACGGCATCAAGTATGAGTCCAAGCCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtgagtatgaacctgggaagctggcagtcagaagtaaagccacagtgatc Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAAC-TACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA ggggatggatagggaagcagaagccaccctgactcacctctctttggtagCCTCTTCCCCACCATGCCGCGACACAACCTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtgagtatgaacctgggaagctggcagtcagaagtaaagccacagtgatc Alignment from GeneWise ggggatggatagggaagcagaagccaccctgactcacctctctttggtagcctcttccccaccatgccgcgacacaacctaccacaaggtggcacccctagtacaatccctgtgcgccagtacggcatcaagtatgagtccaagcccctgcttgcagccttcgcagacattgtttagtgagtatgaacctgggaagctggcagtcagaagtaaagccacagtgatc #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAG-CACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCCACCATGCCAAACCCAACATCTTCCACAAAG-CCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAG-CACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCCACCATGCCAAACCCAACATCTTCCACAAA-GCCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCCACCATGCCAAACCCAACATCTTCCACAAAGCCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAG-CACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCCACCATGCCAAACCCAACATCTTCCACAAAG-CCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAG-CACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCCACCATGCCAAACCCAACATCTTCCACAAAG-CCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCCACCATGCCAAACCCAACATCTTCCACAAAGCCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCCACCATGCCAAACCCAACATCTTCCACAAAGCCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCCACCATGCCAAACCCAACATCTTCCACAAAGCCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTC-CTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCaggtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from CESAR GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTC-CTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCaggtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTG-CCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCT-CCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Pairagon GACTTGCTGTGGGCTG-CCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCT-CCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCA-GGAACCCCAGCTGATGCAGacgtgagtgtcctctcaccttgcagaactagccatgctgtactgttttatgt Alignment from CESAR ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTC-AGGAACCCCAGCTGATGCAGacgtgagtgtcctctcaccttgcagaactagccatgctgtatcacctcttct Alignment from Spaln_aa2Genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTcGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCAG-GAACCCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtactgttttatgt Alignment from Spaln_nt2Genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCA-GGAACCCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtactgttttatgt Alignment from Pairagon ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCA-GGAACCCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtactgttttatgt Alignment from Exonerate_protein2genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTC--ATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCAG---GAACCCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtactgttttatgt Alignment from Exonerate_coding2genome ACTGCTGCTGTTGC---TCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTT--CGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGT-CAGGAACCCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtactgttttatgt Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCAGGAACCCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtactgttttatgt #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTG-AGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt agggcacctgactggaaggttcccctcattactccttctcattttcaaagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGCAGAAACCTGGAAGAAAGAAACTATACGG-GAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTgtgtgagtgtccactctgtaggtggcatctccccagccaggagttgggttcg Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTG-AGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt agggcacctgactggaaggttcccctcattactccttctcattttcaaagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGCAGAAACCTGGAAGAAAGAAACTATACG-GGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTgtgtgagtgtccactctgtaggtggcatctccccagccaggagttgggttcg Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT agggcacctgactggaaggttcccctcattactccttctcattttcaaagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGCAGAAACCTGGAAGAAAGAAACTATACGGGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgagtgtccactctgtaggtggcatctccccagccaggagttgggttcg Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTG-AGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT agggcacctgactggaaggttcccctcattactccttctcattttcaaagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGCAGAAACCTGGAAGAAAGAAACTATACGG-GAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgagtgtccactctgtaggtggcatctccccagccaggagttgggttcg Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTG-AGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT agggcacctgactggaaggttcccctcattactccttctcattttcaaagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGCAGAAACCTGGAAGAAAGAAACTATACGG-GAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgagtgtccactctgtaggtggcatctccccagccaggagttgggttcg Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT agggcacctgactggaaggttcccctcattactccttctcattttcaaagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGCAGAAACCTGGAAGAAAGAAACTATACGGGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgagtgtccactctgtaggtggcatctccccagccaggagttgggttcg Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT agggcacctgactggaaggttcccctcattactccttctcattttcaaagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGCAGAAACCTGGAAGAAAGAAACTATACGGGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgagtgtccactctgtaggtggcatctccccagccaggagttgggttcg Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT agggcacctgactggaaggttcccctcattactccttctcattttcaaagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGCAGAAACCTGGAAGAAAGAAACTATACGGGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgagtgtccactctgtaggtggcatctccccagccaggagttgggttcg #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAA-GAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag aaaatatcataataaatggtgttctctacattttcctctttcttgaacagaGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAACGAGTGGATATGTTCACCCCGCACCAGCC-AGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAA-GAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag aaaatatcataataaatggtgttctctacattttcctctttcttgaacagaGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAACGAGTGGATATGTTCACCCCGCACCA-GCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAACGAGTGGATATGTTCACCCCGCACCAGCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAA-GAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAACGAGTGGATATGTTCACCCCGCACCAG-CCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAA-GAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAACGAGTGGATATGTTCACCCCGCACCAG-CCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAACGAGTGGATATGTTCACCCCGCACCAGCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAACGAGTGGATATGTTCACCCCGCACCAGCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAACGAGTGGATATGTTCACCCCGCACCAGCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGAT-GAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATCGAGGCCACCCTGGGCCAGTGTGGTGTAGAGG-CCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAggtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGAT-GAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATCGAGGCCACCCTGGGCCAGTGTGGTGTAGAGG-CCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAggtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATCGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGAT-GAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATCGAGGCCACCCTGGGCCAGTGTGGTGTAGAGG-CCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGAT-GAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATCGAGGCCACCCTGGGCCAGTGTGGTGTAGAGG-CCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATCGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATCGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATCGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAAC-TGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG actcacacgtaacagtggcctgagggtgtcttctgaccctttacctccagaCTCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACCTGGGTCCCACTGCGCCAACTGCTCCGGC-GCAGCGGGTCAGTCGCGCCTTCGGGGCGCTTGTTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtgagttggggcttggagctgccctcgtccctggtgggtgccactgtcac Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAAC-TGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG actcacacgtaacagtggcctgagggtgtcttctgaccctttacctccagaCTCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACCTGGGTCCCACTGCGCCAACTGCTCCGG-CGCAGCGGGTCAGTCGCGCCTTCGGGGCGCTTGTTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtgagttggggcttggagctgccctcgtccctggtgggtgccactgtcac Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG actcacacgtaacagtggcctgagggtgtcttctgaccctttacctccagACTCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACCTGGGTCCCACTGCGCCAACTGCTCCGGCGCAGCGGGTCAGTCGCGCCTTCGGGGCGCTTGTTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtgagttggggcttggagctgccctcgtccctggtgggtgccactgtcac Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAA-CTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG actcacacgtaacagtggcctgagggtgtcttctgaccctttacctccagACTCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACCTGGGTCCCACTGCGCCAACTGCTCCGGC-GCAGCGGGTCAGTCGCGCCTTCGGGGCGCTTGTTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtgagttggggcttggagctgccctcgtccctggtgggtgccactgtcac Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAA-CTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG actcacacgtaacagtggcctgagggtgtcttctgaccctttacctccagACTCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACCTGGGTCCCACTGCGCCAACTGCTCCGGC-GCAGCGGGTCAGTCGCGCCTTCGGGGCGCTTGTTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtgagttggggcttggagctgccctcgtccctggtgggtgccactgtcac Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG actcacacgtaacagtggcctgagggtgtcttctgaccctttacctccagACTCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACCTGGGTCCCACTGCGCCAACTGCTCCGGCGCAGCGGGTCAGTCGCGCCTTCGGGGCGCTTGTTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtgagttggggcttggagctgccctcgtccctggtgggtgccactgtcac Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG actcacacgtaacagtggcctgagggtgtcttctgaccctttacctccagACTCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACCTGGGTCCCACTGCGCCAACTGCTCCGGCGCAGCGGGTCAGTCGCGCCTTCGGGGCGCTTGTTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtgagttggggcttggagctgccctcgtccctggtgggtgccactgtcac Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG actcacacgtaacagtggcctgagggtgtcttctgaccctttacctccagACTCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACCTGGGTCCCACTGCGCCAACTGCTCCGGCGCAGCGGGTCAGTCGCGCCTTCGGGGCGCTTGTTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtgagttggggcttggagctgccctcgtccctggtgggtgccactgtcac #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGG-CCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCCTGCGCTGGGCAGGGAGCCCACATCCCTGC-CCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from CESAR GAAGGCCCGGGCGGGGGG-CCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCCTGCGCTGGGCAGGGAGCCCACATCCCTG-CCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCCTGCGCTGGGCAGGGAGCCCACATCCCTGCCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCC-TGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCCTGCGCTGGGCAGGGAGCCCACATCCCTGC-CCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Pairagon GAAGGCCCGGGCGGGGGG-CCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCCTGCGCTGGGCAGGGAGCCCACATCCCTGC-CCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCCTGCGCTGGGCAGGGAGCCCACATCCCTGCCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCCTGCGCTGGGCAGGGAGCCCACATCCCTGCCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from GeneWise CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctCAGGAAGGCCCAGGTGGGGGGCCCTGCGCTGGGCAGGGAGCCCACATCCCTGCCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTT-GGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcagaaaaagggatttctggtccaaagataattatgcttttcttttctaggGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTCGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGA-TTGGACCCTTGGGGCCATCGGTGAGGCCCCCACTGATCCAggtaaatggattccctaccccctttgggactggttacctactgtcagtttg Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTT-GGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcagaaaaagggatttctggtccaaagataattatgcttttcttttctaggGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTCGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCC-AGATTGGACCCTTGGGGCCATCGGTGAGGCCCCCACTGATCCAggtaaatggattccctaccccctttgggactggttacctactgtcagtttg Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGC-TTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcagaaaaagggatttctggtccaaagataattatgcttttcttttctagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCtTTCGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAT-TGGACCCTTGGGGCCATCGGTGAGGCCCCCACTGATCCAGgtaaatggattccctaccccctttgggactggttacctactgtcagtttg Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGC-TTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcagaaaaagggatttctggtccaaagataattatgcttttcttttctagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTCGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAG-ATTGGACCCTTGGGGCCATCGGTGAGGCCCCCACTGATCCAGgtaaatggattccctaccccctttgggactggttacctactgtcagtttg Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTT-GGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcagaaaaagggatttctggtccaaagataattatgcttttcttttctagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTCGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAG-ATTGGACCCTTGGGGCCATCGGTGAGGCCCCCACTGATCCAGgtaaatggattccctaccccctttgggactggttacctactgtcagtttg Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcagaaaaagggatttctggtccaaagataattatgcttttcttttctagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTCGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGATTGGACCCTTGGGGCCATCGGTGAGGCCCCCACTGATCCAGgtaaatggattccctaccccctttgggactggttacctactgtcagtttg Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcagaaaaagggatttctggtccaaagataattatgcttttcttttctagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTCGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGATTGGACCCTTGGGGCCATCGGTGAGGCCCCCACTGATCCAGgtaaatggattccctaccccctttgggactggttacctactgtcagtttg Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcagaaaaagggatttctggtccaaagataattatgcttttcttttctagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTCGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGATTGGACCCTTGGGGCCATCGGTGAGGCCCCCACTGATCCAGgtaaatggattccctaccccctttgggactggttacctactgtcagtttg #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAG-TTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagacTCTCAGGTGGACGACATGGATGTGGACTTAGATAAAGAGCTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGG-TGACAAGGACCTCCTGGACCTGCATAAGaggtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagc Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAG-TTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagacTCTCAGGTGGACGACATGGATGTGGACTTAGATAAAGAGCTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGG-TGACAAGGACCTCCTGGACCTGCATAAGaggtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagg Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAAGAGCTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagc Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAG-TTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAAGAGCTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGG-TGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagc Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAG-TTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAAGAGCTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGG-TGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagc Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAAGAGCTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagc Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAG-TTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAAGAGCTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTG-GTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagc Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAAGAGCTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagc #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTGTTTTCTCCCTTGGCA-TGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTGTTTTCTCCCTTGGC-ATGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTGTTTTCTCCCTTGGCATGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTGTTTTCTCCCTTGGCA-TGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTGTTTTCTCCCTTGGCA-TGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTGTTTTCTCCCTTGGCATGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTGTTTTCTCCCTTGGC-ATGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTGTTTTCTCCCTTGGCATGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAA-AAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAACAAGAGTGTGAATCAGTCACTACTGGAATTGC-CAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAA-AAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAACAAGAGTGTGAATCAGTCACTACTGGAATTG-CCAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAACAAGAGTGTGAATCAGTCACTACTGGAATTGCCAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAA-AAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAACAAGAGTGTGAATCAGTCACTACTGGAATTGC-CAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAA-AAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAACAAGAGTGTGAATCAGTCACTACTGGAATTGC-CAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAACAAGAGTGTGAATCAGTCACTACTGGAATTGCCAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAACAAGAGTGTGAATCAGTCACTACTGGAATTGCCAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAACAAGAGTGTGAATCAGTCACTACTGGAATTGCCAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGC-TACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCCTACCGAGTTCACGAAGAATTACAAAACCATG-GCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAggttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGC-TACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCCTACCGAGTTCACGAAGAATTACAAAACCATG-GCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAggttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGC-TACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCcTACCGAGTTCACGAAGAATTACAAAACCATGG-CTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAGGT------AGACTCTGGC-TACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCCTACCGAGTTCACGAAGAATTACAAAACCAT-GGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACA------TCAAGGTAGACTCTGG-CTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCCTACCGAGTTCACGAAGAATTACAAAACCAT-GGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCCTACCGAGTTCACGAAGAATTACAAAACCATGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCCTACCGAGTTCACGAAGAATTACAAAACCATGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCCTACCGAGTTCACGAAGAATTACAAAACCATGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTG-AAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGCAAGGATGCTGTGCATTATGGAGGCTGGGAGC-CCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTG-AAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGCAAGGATGCTGTGCATTATGGAGGCTGGGAG-CCCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGCAAGGATGCTGTGCATTATGGAGGCTGGGAGCCCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTG-AAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGCAAGGATGCTGTGCATTATGGAGGCTGGGAGC-CCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTG-AAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGCAAGGATGCTGTGCATTATGGAGGCTGGGAGC-CCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTG-AAGGATGCTGTGCATTATGGAGGCTGGGAG--CACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGCAAGGATGCTGTGCATTATGGAGGCTGGGAGCC---CGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTG-AAGGATGCTGTGCATTATGGAGGCTGGGAG--CACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGCAAGGATGCTGTGCATTATGGAGGCTGGGAGCC---CGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGCAAGGATGCTGTGCATTATGGAGGCTGGGAGCCCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTA-ATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTACATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGA-TAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from CESAR CACATGGCGACTGCTGATGGGCTA-ATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTACATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTG-ATAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTA-ATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAcATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAT-AGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTA-ATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTACATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGA-TAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Pairagon CACATGGCGACTGCTGATGGGCTA-ATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTACATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGA-TAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTA-ATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTG--AGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTACATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAT---AGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTA-ATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTG--AGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTACATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAT---AGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTACATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGATAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGAC-AACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gactgagttccttgccatgtatcaggcttaaccaagcctgtgtttttcaggaGCTGTGTGGACAGGGGACCAACACTGCCGAATGGGATCATTTGAAGATCT-TATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAggttggtgaaggagacatttggggttttgtttagacatttggggttttgat Alignment from CESAR gaGCTGTGTGGACAGGGGAC-AACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gactgagttccttgccatgtatcaggcttaaccaagcctgtgtttttcaggaGCTGTGTGGACAGGGGACCAACACTGCCGAATGGGATCATTTGAAGATC-TTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAggttggtgaaggagacatttggggttttgtttagacatttggggttttgat Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgagttccttgccatgtatcaggcttaaccaagcctgtgtttttcagGAGCTGTGTGGACAGGGGACCAACACTGCCGAATGGGATCATTTGAAGATCTTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgttggtgaaggagacatttggggttttgtttagacatttggggttttgat Alignment from Spaln_nt2Genome GAGCTGTGTGGACA-GGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgagttccttgccatgtatcaggcttaaccaagcctgtgtttttcagGAGCTGTGTGGACAGGGGACCAACACTGCCGAATGGGATCATTTGAAGATCT-TATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgttggtgaaggagacatttggggttttgtttagacatttggggttttgat Alignment from Pairagon GAGCTGTGTGGACAGGGGA-CAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgagttccttgccatgtatcaggcttaaccaagcctgtgtttttcagGAGCTGTGTGGACAGGGGACCAACACTGCCGAATGGGATCATTTGAAGATCT-TATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgttggtgaaggagacatttggggttttgtttagacatttggggttttgat Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgagttccttgccatgtatcaggcttaaccaagcctgtgtttttcagGAGCTGTGTGGACAGGGGACCAACACTGCCGAATGGGATCATTTGAAGATCTTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgttggtgaaggagacatttggggttttgtttagacatttggggttttgat Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgagttccttgccatgtatcaggcttaaccaagcctgtgtttttcagGAGCTGTGTGGACAGGGGACCAACACTGCCGAATGGGATCATTTGAAGATCTTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgttggtgaaggagacatttggggttttgtttagacatttggggttttgat Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgagttccttgccatgtatcaggcttaaccaagcctgtgtttttcagGAGCTGTGTGGACAGGGGACCAACACTGCCGAATGGGATCATTTGAAGATCTTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgttggtgaaggagacatttggggttttgtttagacatttggggttttgat #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCAC-CCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA gggcttcagaaatgtgtgggatgtgtataatgacttactttcctctttaggtGATGCACTCCTTATTCATCCCTGTATCAGATGCTGGGGCCCACGGAGTGCAGGTTTATT-GCCTGGCCAAGAAGAAgtaagtcacagaatattgtggccaaagggacaaaagcatggaacccctat Alignment from CESAR gtGATGCACTCCTTATTCAC-CCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA gggcttcagaaatgtgtgggatgtgtataatgacttactttcctctttaggtGATGCACTCCTTATTCATCCCTGTATCAGATGCTGGGGCCCACGGAGTGCAGGTTT-ATTGCCTGGCCAAGAAGAAgtaagtcacagaatattgtggccaaagggacaaaagcatggaacccctat Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA gggcttcagaaatgtgtgggatgtgtataatgacttactttcctctttagGTGATGCACTCCTTATTCATCCCtGTATCAGATGCTGGGGCCCACGGAGTGCAGGTTTATTG-CCTGGCCAAGAAGAAgtaagtcacagaatattgtggccaaagggacaaaagcatggaacccctat Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCA-CCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA gggcttcagaaatgtgtgggatgtgtataatgacttactttcctctttagGTGATGCACTCCTTATTCATCCCTGTATCAGATGCTGGGGCCCACGGAGTGCAGGTTTATT-GCCTGGCCAAGAAGAAgtaagtcacagaatattgtggccaaagggacaaaagcatggaacccctat Alignment from Pairagon GTGATGCACTCCTTATTCA-CCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA gggcttcagaaatgtgtgggatgtgtataatgacttactttcctctttagGTGATGCACTCCTTATTCATCCCTGTATCAGATGCTGGGGCCCACGGAGTGCAGGTTTA-TTGCCTGGCCAAGAAGAAgtaagtcacagaatattgtggccaaagggacaaaagcatggaacccctat Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCAC-CCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTAT--TTGCCTGGCCAAGAAGAA gggcttcagaaatgtgtgggatgtgtataatgacttactttcctctttagGTGATGCACTCCTTATTCATCCCTGTATCAGATGCTGGGGCCCACGGAGTGCAGGTTTATTG---CCTGGCCAAGAAGAAgtaagtcacagaatattgtggccaaagggacaaaagcatggaacccctat Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCC---TGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA gggcttcagaaatgtgtgggatgtgtataatgacttactttcctctttagGTGATGCACTCCTTATTCAT--CCCTGTATCAGATGCTGGGGCCCACGGAGTGCAGGTTTA-TTGCCTGGCCAAGAAGAAgtaagtcacagaatattgtggccaaagggacaaaagcatggaacccctat Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA gggcttcagaaatgtgtgggatgtgtataatgacttactttcctctttagGTGATGCACTCCTTATTCATCCCTGTATCAGATGCTGGGGCCCACGGAGTGCAGGTTTATTGCCTGGCCAAGAAGAAgtaagtcacagaatattgtggccaaagggacaaaagcatggaacccctat #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGCAGCTATCAGAAGCATCATGGGCCCCAGACCT-GTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from CESAR GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGCAGCTATCAGAAGCATCATGGGCCCCAGA-CCTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGcAGCTATCAGAAGCATCATGGGCCCCAGAC-CTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGCAGCTATCAGAAGCATCATGGGCCCCAGACCT-GTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Pairagon GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGCAGCTATCAGAAGCATCATGGGCCCCAGACC-TGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGCAGCTATCAGAAGCATCATGGGCCCCAGACCTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGCAGCTATCAGAAGCATCATGGGCCCCAGACCTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGCAGCTATCAGAAGCATCATGGGCCCCAGACCTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGA-TGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGACTGGATGCGTGTGAGGCGCCCTTCAGACTGTATGA-GGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGA-TGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGACTGGATGCGTGTGAGGCGCCCTTCAGACTGTATGA-GGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGACTGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGA-TGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGACTGGATGCGTGTGAGGCGCCCTTCAGACTGTATG-AGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGA-TGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGACTGGATGCGTGTGAGGCGCCCTTCAGACTGTATG-AGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGACTGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGACTGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGACTGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACC-AGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG cagtaactgtacaaagattttgtgtgttctttttgattatttctaagcagctGACAAAAAGTTCACCCAGGAAGCCACCTCGATTTTCCTGTCTCCTGC-AGATCCATGGGAACTAATTGAAATTAAAAACAAAAAAAAGgtgagtgaattgaatccatacacacccccagtgtgtttagcaactgccca Alignment from CESAR ctGACAAAAAGTTCACC-AGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG cagtaactgtacaaagattttgtgtgttctttttgattatttctaagcagctGACAAAAAGTTCACCCAGGAAGCCACCTCGATTTTCCTGTCTCCTGC-AGATCCATGGGAACTAATTGAAATTAAAAACAAAAAAAAGgtgagtgaattgaatccatacacacccccagtgtgtttagcaactgccca Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG cagtaactgtacaaagattttgtgtgttctttttgattatttctaagcagCTGACAAAAAGTTCACCCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCAGATCCATGGGAACTAATTGAAATTAAAAACAAAAAAAAGgtgagtgaattgaatccatacacacccccagtgtgtttagcaactgccca Alignment from Spaln_nt2Genome CTGACAAAAAGTTCA-CCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG cagtaactgtacaaagattttgtgtgttctttttgattatttctaagcagCTGACAAAAAGTTCACCCAGGAAGCCACCTCGATTTTCCTGTCTCCTG-CAGATCCATGGGAACTAATTGAAATTAAAAACAAAAAAAAGgtgagtgaattgaatccatacacacccccagtgtgtttagcaactgccca Alignment from Pairagon CTGACAAAAAGTTCA-CCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG cagtaactgtacaaagattttgtgtgttctttttgattatttctaagcagCTGACAAAAAGTTCACCCAGGAAGCCACCTCGATTTTCCTGTCTCCTG-CAGATCCATGGGAACTAATTGAAATTAAAAACAAAAAAAAGgtgagtgaattgaatccatacacacccccagtgtgtttagcaactgccca Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG cagtaactgtacaaagattttgtgtgttctttttgattatttctaagcagCTGACAAAAAGTTCACCCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCAGATCCATGGGAACTAATTGAAATTAAAAACAAAAAAAAGgtgagtgaattgaatccatacacacccccagtgtgtttagcaactgccca Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG cagtaactgtacaaagattttgtgtgttctttttgattatttctaagcagCTGACAAAAAGTTCACCCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCAGATCCATGGGAACTAATTGAAATTAAAAACAAAAAAAAGgtgagtgaattgaatccatacacacccccagtgtgtttagcaactgccca Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG cagtaactgtacaaagattttgtgtgttctttttgattatttctaagcagCTGACAAAAAGTTCACCCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCAGATCCATGGGAACTAATTGAAATTAAAAACAAAAAAAAGgtgagtgaattgaatccatacacacccccagtgtgtttagcaactgccca #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTG-GAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagcACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTACGAAGCCTTCCGTTTGCCTGGGGAAGCACCCC-TATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from CESAR cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTG-GAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagcACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTACGAAGCCTTCCGTTTGCCTGGGGAAGCACCC-CTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTACGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTG-GAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTACGAAGCCTTCCGTTTGCCTGGGGAAGCA-CCCCTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Pairagon CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTG-GAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTACGAAGCCTTCCGTTTGCCTGGGGAAGCACCC-CTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTACGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTACGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTACGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTCGTGGATCCCAATGGCAAGATCTCTCTACAGCGCG-GGAGACACCATCCAACcggtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from CESAR GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTCGTGGATCCCAATGGCAAGATCTCTCTACAGCGC-GGGAGACACCATCCAACcggtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAG---GAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttaggtagaagATT------TTCGTGGATCCCAATGGCAAGATCTCTCTACAGCGCGGGAGACACCATCCAACCGGTAGgcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Spaln_nt2Genome GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTCGTGGATCCCAATGGCAAGATCTCTCTACAGCGCG-GGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Pairagon GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTCGTGGATCCCAATGGCAAGATCTCTCTACAGCGCG-GGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTCGTGGATCCCAATGGCAAGATCTCTCTACAGCGCGGGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTCGTGGATCCCAATGGCAAGATCTCTCTACAGCGCGGGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from GeneWise agtgctttcaatactgagccatttgccattcaattttcatctttacttaggtagaagattttcgtggatcccaatggcaagatctctctacagcgcgggagacaccatccaaccggtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from CESAR CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Spaln_aa2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAcGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGA-TCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Spaln_nt2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGA-TCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Pairagon CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Exonerate_coding2genome CAATGTGACCCAGA---AAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCA--CGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGA-TCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCT-GGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTCGGCAAAATACATCGATCGGCCACAGATGCTG-CATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCT-GGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTCGGCAAAATACATCGATCGGCCACAGATGCT-GCATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTCGGCAAAATACATCGATCGGCCACAGATGCTGCATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCT-GGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTCGGCAAAATACATCGATCGGCCACAGATGCTG-CATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCT-GGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTCGGCAAAATACATCGATCGGCCACAGATGCTG-CATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTCGGCAAAATACATCGATCGGCCACAGATGCTGCATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTCGGCAAAATACATCGATCGGCCACAGATGCTGCATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTCGGCAAAATACATCGATCGGCCACAGATGCTGCATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg gacgtctggctgggaattgggccccagcagatgtccctctttttccccagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTGCTTAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTG-CCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTggtaagttacctatgccaggggccattagggagtgggtcaagtgaggaggg Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg gacgtctggctgggaattgggccccagcagatgtccctctttttccccagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTGCTTAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTG-CCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTggtaagttacctatgccaggggccattagggagtgggtcaagtgaggaggg Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gacgtctggctgggaattgggccccagcagatgtccctctttttccccagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTGCTTAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTGgtaagttacctatgccaggggccattagggagtgggtcaagtgaggaggg Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gacgtctggctgggaattgggccccagcagatgtccctctttttccccagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTGCTTAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGC-CACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTGgtaagttacctatgccaggggccattagggagtgggtcaagtgaggaggg Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gacgtctggctgggaattgggccccagcagatgtccctctttttccccagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTGCTTAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGC-CACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTGgtaagttacctatgccaggggccattagggagtgggtcaagtgaggaggg Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gacgtctggctgggaattgggccccagcagatgtccctctttttccccagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTGCTTAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTGgtaagttacctatgccaggggccattagggagtgggtcaagtgaggaggg Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGT---GGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gacgtctggctgggaattgggccccagcagatgtccctctttttccccagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTGCTTAAG--TGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGC-CACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTGgtaagttacctatgccaggggccattagggagtgggtcaagtgaggaggg Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gacgtctggctgggaattgggccccagcagatgtccctctttttccccagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTGCTTAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTGgtaagttacctatgccaggggccattagggagtgggtcaagtgaggaggg #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGAC-GCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcaggaATTGCCTGCTTATGCTGTGATCGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATC-ACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from CESAR gaATCGCCTGCTTATGCTGTGAC-GCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcaggaATTGCCTGCTTATGCTGTGATCGCCCGACGCCAGGTACGGATGCAGGCCCTGACATAT-CACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATCGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGA-CGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATCGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATC-ACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Pairagon GAATCGCCTGCTTATGCTGTGA-CGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATCGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATC-ACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGAC-GCCCGGCGCCAGGTACGGATGCAGGCCCTGACATAT--CTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATCGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCA---CAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGAC-GCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATCGCCCGACGCCAGGTACGGATGCAGGCCCTGACATAT-CACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATCGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAAT-ATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccaggcccaactggctgggctaatgtgcatctcctctgttcacatacagGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATCATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCC-GATGCGGGCTTCCACACTGCTCTCAAAGgtaattctctccactctgcccccacctgtttgccccaaacctccttttcc Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAAT-ATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccaggcccaactggctgggctaatgtgcatctcctctgttcacatacagGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATCATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCC-GATGCGGGCTTCCACACTGCTCTCAAAGgtaattctctccactctgcccccacctgtttgccccaaacctccttttcc Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAAT-ATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccaggcccaactggctgggctaatgtgcatctcctctgttcacatacagGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATcATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCCG-ATGCGGGCTTCCACACTGCTCTCAAAGgtaattctctccactctgcccccacctgtttgccccaaacctccttttcc Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGG-AAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccaggcccaactggctgggctaatgtgcatctcctctgttcacatacagGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATCATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGA-CCCGATGCGGGCTTCCACACTGCTCTCAAAGgtaattctctccactctgcccccacctgtttgccccaaacctccttttcc Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAAT-ATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccaggcccaactggctgggctaatgtgcatctcctctgttcacatacagGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATCATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCC-GATGCGGGCTTCCACACTGCTCTCAAAGgtaattctctccactctgcccccacctgtttgccccaaacctccttttcc Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccaggcccaactggctgggctaatgtgcatctcctctgttcacatacagGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATCATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCCGATGCGGGCTTCCACACTGCTCTCAAAGgtaattctctccactctgcccccacctgtttgccccaaacctccttttcc Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAAT-ATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccaggcccaactggctgggctaatgtgcatctcctctgttcacatacagGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATCATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCCGA-TGCGGGCTTCCACACTGCTCTCAAAGgtaattctctccactctgcccccacctgtttgccccaaacctccttttcc Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccaggcccaactggctgggctaatgtgcatctcctctgttcacatacagGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATCATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCCGATGCGGGCTTCCACACTGCTCTCAAAGgtaattctctccactctgcccccacctgtttgccccaaacctccttttcc #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTG-TCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGCTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGT-GCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from CESAR GTCTTCCTGCAGCATCTG-TCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGCTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTG-TGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGCTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTG-TCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGCTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGT-GCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Pairagon GTCTTCCTGCAGCATCTG-TCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGCTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGT-GCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGCTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGT-CTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGCTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGT-GCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGCTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAG-ATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGCATCACCTGGGAGCGCATCGACTGCTTCTTGCCAC-CTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAG-ATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGCATCACCTGGGAGCGCATCGACTGCTTCTTGCCA-CCTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGCATCACCTGGGAGCGCATCGACTGCTTCTTGCCACCTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAG-ATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGCATCACCTGGGAGCGCATCGACTGCTTCTTGCCAC-CTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAG-ATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGCATCACCTGGGAGCGCATCGACTGCTTCTTGCCAC-CTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAG-ATTACCTGGGAGCGCATCGACTGCTTCTTGCCA--CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGCATCACCTGGGAGCGCATCGACTGCTTCTTGCCACC---TTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAG-ATTACCTGGGAGCGCATCGACTGCTTCTTGCCA--CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGCATCACCTGGGAGCGCATCGACTGCTTCTTGCCACC---TTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGCATCACCTGGGAGCGCATCGACTGCTTCTTGCCACCTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagtTATCACTCAGAAACTAATCTTCGTCCGGTATATGAAGAAACTGGAGAACAAAGACA-CTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from CESAR cTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagtTATCACTCAGAAACTAATCTTCGTCCGGTATATGAAGAAACTGGAGAACAAAGAC-ACTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTcGTCCGGTATATGAAGAAACTGGAGAACAAAGACAC-TCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTCGTCCGGTATATGAAGAAACTGGAGAACAAAGACA-CTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Pairagon CTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTCGTCCGGTATATGAAGAAACTGGAGAACAAAGACA-CTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTCGTCCGGTATATGAAGAAACTGGAGAACAAAGACACTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTCGTCCGGTATATGAAGAAACTGGAGAACAAAGACACTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTCGTCCGGTATATGAAGAAACTGGAGAACAAAGACACTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAG-GACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagagAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGCGACATTCGGCCCTATTGCTACTGGGATGCGGAGA-GAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAG-GACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagagAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGCGACATTCGGCCCTATTGCTACTGGGATGCGGAGA-GAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGCGACATTCGGCCCTATTGCTACTGGGATGCGGAGAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAG-GACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGCGACATTCGGCCCTATTGCTACTGGGATGCGGAG-AGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAG-GACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGCGACATTCGGCCCTATTGCTACTGGGATGCGGAG-AGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAG-GACATTCGGCCCTATTGCTACTGGGATGCG--GAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGCGACATTCGGCCCTATTGCTACTGGGATGCGGAGAG---AGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAG-GACATTCGGCCCTATTGCTACTGGGATGCG--GAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGCGACATTCGGCCCTATTGCTACTGGGATGCGGAGAG---AGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTT-AAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG-AAT tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGCGACATTCGGCCCTATTGCTACTGGGATGCGGAGAG-AGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGGCAAgtgatacagaagagcagtggagaattctgtttaggtgcagcaagga #### Gpha2_ID1505_2 --> 2 - 0 Original Alignment ccTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTC-CCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagcgTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCCTCCCGGTACTCTGTGCTGGTGGTCAGTGGCTATCGGC-CAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from CESAR ccTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCT-TCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagcgTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCCTCCCGGTACTCTGTGCTGGTGGTCAGTGGCTATCGG-CCAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Spaln_aa2Genome CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCCTCCCGGTACTCTGTGCTGGTGGTCAGTGGCTATCGGCCAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Spaln_nt2Genome CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTT-CCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCCTCCCGGTACTCTGTGCTGGTGGTCAGTGGCTATCGGC-CAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Pairagon CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTT-CCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCCTCCCGGTACTCTGTGCTGGTGGTCAGTGGCTATCGGC-CAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Exonerate_protein2genome CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCCTCCCGGTACTCTGTGCTGGTGGTCAGTGGCTATCGGCCAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Exonerate_coding2genome CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTC---CCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCC--CTCCCGGTACTCTGTGCTGGTGGTCAGTGGCTATCGGCC-AACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from GeneWise CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTAT------CGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCC------CTCCCGGTACTCTGTGCTGGTGGTCAGTGGCTATCGGCCAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTC-AATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCCAACGGGCAGGTTTTTGGCTCCCGATCCTACTTCT-TGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from CESAR AGCACCAGTCGAATCCTC-AATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCCAACGGGCAGGTTTTTGGCTCCCGATCCTACT-TCTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTC-AATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCcAACGGGCAGGTTTTTGGCTCCCGATCCTACTTCTT-GACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCT-CAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCCAACGGGCAGGTTTTTGGCTCCCGATCCTACTTC-TTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Pairagon AGCACCAGTCGAATCCT-CAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCCAACGGGCAGGTTTTTGGCTCCCGATCCTACTTC-TTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCCAACGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCCAACGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from GeneWise AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCCAACGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTG-CTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgccatcagcctctgtgttggcagaattatgaatttaattttatttcagGCAGATCTGGTGAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCCTGCCCACCACATTGCTGGTGGGCTTCTTCC-GGTACACCGGCCCCCACAGGATCTGgtatgtacccctgcccaacctcctcttggtgcagtatagaggtctggacc Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTG-CTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgccatcagcctctgtgttggcagaattatgaatttaattttatttcagGCAGATCTGGTGAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCCTGCCCACCACATTGCTGGTGGGCTTCTTCC-GGTACACCGGCCCCCACAGGATCTGgtatgtacccctgcccaacctcctcttggtgcagtatagaggtctggacc Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgccatcagcctctgtgttggcagaattatgaatttaattttatttcagGCAGATCTGGTGAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGTACACCGGCCCCCACAGGATCTGgtatgtacccctgcccaacctcctcttggtgcagtatagaggtctggacc Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTG-CTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgccatcagcctctgtgttggcagaattatgaatttaattttatttcagGCAGATCTGGTGAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCCTGCCCACCACATTGCTGGTGGGCTTCTTCCGG-TACACCGGCCCCCACAGGATCTGgtatgtacccctgcccaacctcctcttggtgcagtatagaggtctggacc Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTG-CTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgccatcagcctctgtgttggcagaattatgaatttaattttatttcagGCAGATCTGGTGAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCCTGCCCACCACATTGCTGGTGGGCTTCTTCC-GGTACACCGGCCCCCACAGGATCTGgtatgtacccctgcccaacctcctcttggtgcagtatagaggtctggacc Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgccatcagcctctgtgttggcagaattatgaatttaattttatttcagGCAGATCTGGTGAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGTACACCGGCCCCCACAGGATCTGgtatgtacccctgcccaacctcctcttggtgcagtatagaggtctggacc Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgccatcagcctctgtgttggcagaattatgaatttaattttatttcagGCAGATCTGGTGAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGTACACCGGCCCCCACAGGATCTGgtatgtacccctgcccaacctcctcttggtgcagtatagaggtctggacc Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgccatcagcctctgtgttggcagaattatgaatttaattttatttcagGCAGATCTGGTGAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGTACACCGGCCCCCACAGGATCTGgtatgtacccctgcccaacctcctcttggtgcagtatagaggtctggacc #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATG-CTTTGATTACGACTGGTACAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATG-CTTTGATTACGACTGGTACAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATA---GGGGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCTTTGATTACGACTGGTACAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCT-TTGATTACGACTGGTACAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATG-CTTTGATTACGACTGGTACAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATA---GGGGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCTTTGATTACGACTGGTACAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATA---GGGGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCTTTGATTACGACTGGTACAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCTTTGATTACGACTGGTACAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc #### Hif1an_ID9068_6 --> 1 - 0 Original Alignment gTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacaggTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGA-CTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from CESAR gTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacaggTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTG-TGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Spaln_aa2Genome GTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATAcGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAC-TTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Spaln_nt2Genome GTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTG-ACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Pairagon GTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTG-ACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Exonerate_protein2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Exonerate_coding2genome GTGGCACCATAT---AGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCAT--ATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAC-TTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from GeneWise GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagatACGTCAGATCTCCACTTCCAAATACAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGT-CCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from CESAR atACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagatACGTCAGATCTCCACTTCCAAATACAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAG-TCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAcAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTC-CCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATACAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAG-AAAAGTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATACAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAG-TCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAG--TTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATACAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTC---CCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAG--TTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATACAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTC---CCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATA-AGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATACAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTC-CCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tctgtttatgcatgtgcaactgtaaatcatacaggtcctttgccttacagtgGGCGGGCAGCGCCGAGGCCTACGACAACCGGGCCTACGGGCAGCAGTACT-GGGGCAGTCTGGAAACAGAGGGgtatttgcagttctccttctgctcctccctctgggctgtgaagggtttgg Alignment from CESAR tgGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tctgtttatgcatgtgcaactgtaaatcatacaggtcctttgccttacagtgGGCGGGCAGCGCCGAGGCCTACGACAACCGGGCCTACGGGCAGCAGTACT-GGGGCAGTCTGGAAACAGAGGGgtatttgcagttctccttctgctcctccctctgggctgtgaagggtttgg Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tctgtttatgcatgtgcaactgtaaatcatacaggtcctttgccttacagTGGGCGGGCAGCGCCGAGGCcTACGACAACCGGGCCTACGGGCAGCAGTACTGGGG-CAGTCTGGAAACAGAGGGgtatttgcagttctccttctgctcctccctctgggctgtgaagggtttgg Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGG-CTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tctgtttatgcatgtgcaactgtaaatcatacaggtcctttgccttacagTGGGCGGGCAGCGCCGAGGCCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGG-CAGTCTGGAAACAGAGGGgtatttgcagttctccttctgctcctccctctgggctgtgaagggtttgg Alignment from Pairagon TGGGCGGGCAGCGCCGAGG-CTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tctgtttatgcatgtgcaactgtaaatcatacaggtcctttgccttacagTGGGCGGGCAGCGCCGAGGCCTACGACAACCGGGCCTACGGGCAGCAGTACT-GGGGCAGTCTGGAAACAGAGGGgtatttgcagttctccttctgctcctccctctgggctgtgaagggtttgg Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGG tctgtttatgcatgtgcaactgtaaatcatacaggtcctttgccttacagTGGGCGGGCAGCGCCGAGGCCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGCAGTCTGGAAACAGAGGGgtatttgcagttctccttctgctcctccctctgggctgtgaagggtttgg Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGG tctgtttatgcatgtgcaactgtaaatcatacaggtcctttgccttacagTGGGCGGGCAGCGCCGAGGCCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGCAGTCTGGAAACAGAGGGgtatttgcagttctccttctgctcctccctctgggctgtgaagggtttgg Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tctgtttatgcatgtgcaactgtaaatcatacaggtcctttgccttacagTGGGCGGGCAGCGCCGAGGCCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGCAGTCTGGAAACAGAGGGgtatttgcagttctccttctgctcctccctctgggctgtgaagggtttgg #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAG-ATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagccACGCAAGCTACAGTAGAGCATGACTGTCAGCATGGCTCAGGTGGGCG-TGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from CESAR ccACGCAAGCCACAGTAGAG-ATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagccACGCAAGCTACAGTAGAGCATGACTGTCAGCATGGCTCAGGTGGGCG-TGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAG-ATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGcATGACTGTCAGCATGGCTCAGGTGGGCGT-GATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAG-ATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGCATGACTGTCAGCATGGCTCAGGTGGGCG-TGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Pairagon CCACGCAAGCCACAGTAGAG-ATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGCATGACTGTCAGCATGGCTCAGGTGGGCG-TGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGCATGACTGTCAGCATGGCTCAGGTGGGCGTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGCATGACTGTCAGCATGGCTCAGGTGGGCGTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGCATGACTGTCAGCATGGCTCAGGTGGGCGTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc gtggtcagggctcatgaacagctgcttagccctcattgtctctctggcaggGAGAGGCTTCTGCGACTGGAAGGACTTCTTGCTGGTGAAGAGCC-GAGAAATGTCACCATGGTTtcgtaatttctgcctgatgtatccagaggctagacatgtgtgtcccaccatg Alignment from CESAR gGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc gtggtcagggctcatgaacagctgcttagccctcattgtctctctggcaggGAGAGGCTTCTGCGACTGGAAGGACTTCTTGCTGGTGAAGAGCC-GAGAAATGTCACCATGGTTtcgtaatttctgcctgatgtatccagaggctagacatgtgtgtcccaccatg Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAA gtggtcagggctcatgaacagctgcttagccctcattgtctctctggcagggagAGGC---TTCTGCGACTGGAAGGACTTCTTGCTGGTGAAGAGCCGAGAAATgtcaccatggtttcgtaatttctgcctgatgtatccagaggctagacatgtgtgtcccaccatg Alignment from Spaln_nt2Genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC gtggtcagggctcatgaacagctgcttagccctcattgtctctctggcagGGAGAGGCTTCTGCGACTGGAAGGACTTCTTGCTGGTGAAGAGCCG-AGAAATGTCACCATGGTTTCgtaatttctgcctgatgtatccagaggctagacatgtgtgtcccaccatg Alignment from Pairagon GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC gtggtcagggctcatgaacagctgcttagccctcattgtctctctggcagGGAGAGGCTTCTGCGACTGGAAGGACTTCTTGCTGGTGAAGAGCC-GAGAAATGTCACCATGGTTTCgtaatttctgcctgatgtatccagaggctagacatgtgtgtcccaccatg Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC gtggtcagggctcatgaacagctgcttagccctcattgtctctctggcagGGAGAGGCTTCTGCGACTGGAAGGACTTCTTGCTGGTGAAGAGCCGAGAAATGTCACCATGGTTTCgtaatttctgcctgatgtatccagaggctagacatgtgtgtcccaccatg Alignment from Exonerate_coding2genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC gtggtcagggctcatgaacagctgcttagccctcattgtctctctggcagGGAGAGGCTTCTGCGACTGGAAGGACTTCTTGCTGGTGAAGAGCCGA-GAAATGTCACCATGGTTTCgtaatttctgcctgatgtatccagaggctagacatgtgtgtcccaccatg Alignment from GeneWise GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAA gtggtcagggctcatgaacagctgcttagccctcattgtctctctggcagggagA---GGCTTCTGCGACTGGAAGGACTTCTTGCTGGTGAAGAGCCGAGAAATgtcaccatggtttcgtaatttctgcctgatgtatccagaggctagacatgtgtgtcccaccatg #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGAC-CTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagcCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGG-AGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGAC-CTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagcCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGG-AGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGAC-CTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACcCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGA-GATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGA-CCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGA-GATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGA-CCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGA-GATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGAC-CTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAG--GAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGA---GATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCA---GCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGAC--CCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGA-GATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaaggGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAAC-GGAGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from CESAR gGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaaggGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAA-CGGAGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGAcGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACG-GAGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAAC-GGAGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Pairagon GGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAAC-GGAGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACGGAGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACGGAGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACGGAGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCCATCTTAACTCTGCCTCCCTACCAGCGCCGGGGCT-CGGCAAGCTGCTTATTGAGTTCagtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCCATCTTAACTCTGCCTCCCTACCAGCGCCGGGGC-TCGGCAAGCTGCTTATTGAGTTCagtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCCATCTTAACTCTGCCTCCCTACCAGCGCCGGGGCTCGGCAAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCCATCTTAACTCTGCCTCCCTACCAGCGCCGGGGCT-CGGCAAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATGTGGCCTG-CATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCCATCTTAACTCTGCCTCCCTACCAGCGCCGGGGCT-CGGCAAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCCATCTTAACTCTGCCTCCCTACCAGCGCCGGGGCTCGGCAAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCCATCTTAACTCTGCCTCCCTACCAGCGCCGGGGCTCGGCAAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCCATCTTAACTCTGCCTCCCTACCAGCGCCGGGGCTCGGCAAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAG-ATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGCATCACACTCCGCTTCAACCTGCCCAAGGAGC-GGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAG-ATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGCATCACACTCCGCTTCAACCTGCCCAAGGAGC-GGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGCATCACACTCCGCTTCAACCTGCCCAAGGAGCGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAG-ATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGCATCACACTCCGCTTCAACCTGCCCAAGGAGC-GGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAG-ATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGCATCACACTCCGCTTCAACCTGCCCAAGGAGC-GGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGCATCACACTCCGCTTCAACCTGCCCAAGGAGCGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGCATCACACTCCGCTTCAACCTGCCCAAGGAGCGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGCATCACACTCCGCTTCAACCTGCCCAAGGAGCGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagtcAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCAATTACCCAAGAAAGAGGCCCAGCACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCT-TCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagtcAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCAATTACCCAAGAAAGAGGCCCAGCACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGC-TTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCAATTACCCAAGAAAGAGGCCCAGcACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTT-CCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGG-CCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCAATTACCCAAGAAAGAGGCCCAGCACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCT-TCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCAATTACCCAAGAAAGAGGCCCAGCACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCT-TCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCC---GAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCAATTACCCAAGAAAGAGGCCCAGCACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTTCCCGAAAGAGAGGTGGTAAgtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCC---GAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCAATTACCCAAGAAAGAGGCCCAGCACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTTCCCGAAAGAGAGGTGGTAAgtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCC-AAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCAATTACCCAAGAAAGAGGCCCAGCACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTT-CCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATC-AGACAATGAAGATGAGTGGcgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from CESAR GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATC-AGACAATGAAGATGAGTGGcgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Spaln_aa2Genome GGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagggggagataatccgagGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCA-GACAATGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Spaln_nt2Genome GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAG-ACAATGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Pairagon GGGGAGATAAT-CGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCA-GACAATGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAAC--CAGGACAACGAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccaggGGGAGATAATCCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCA---GACAATGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Exonerate_coding2genome CGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagggggagataatcCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAA-TCAGACAATGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from GeneWise gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagggggagataatccgagggctgccgcctgcccgtccttcggcgcaatcagacaatgaagatgagtggcgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTAC-CCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACG-GGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTAC-CCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACAC-GGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCT-GCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCcGCCCTCCGGGAGGAAGCCCCGAGGGAACACGG-GAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCT-GCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACG-GGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTA-CCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACG-GGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagtCCCACAGTCAACCACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCC-GGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from CESAR tCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagtCCCACAGTCAACCACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGC-CGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACcACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCG-GGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACCACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCC-GGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Pairagon TCCCACAGTCAA-CACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACCACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCC-GGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACCACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Exonerate_coding2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACCACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACCACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat #### Klc2_ID856_10 --> 0 - 2 Original Alignment GATAAGCGCCGG-GACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACag gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGCGACAGTGCCCCCTATGGGGAATATGGCAGCTGGT-CAAAGCCTGCAAAGTTGACaggtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from CESAR GATAAGCGCCGG-GACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACag gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGCGACAGTGCCCCCTATGGGGAATATGGCAGCTGG-TCAAAGCCTGCAAAGTTGACaggtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Spaln_aa2Genome GATAAGCGCCGG-GACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGcGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTC-AAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Spaln_nt2Genome GATAAGCGCCGG-GACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGCGACAGTGCCCCCTATGGGGAATATGGCAGCTGGT-CAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Pairagon GATAAGCGCCGG-GACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGCGACAGTGCCCCCTATGGGGAATATGGCAGCTGGT-CAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Exonerate_protein2genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGCGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTCAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Exonerate_coding2genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGCGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTCAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from GeneWise GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGCGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTCAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc #### Klc2_ID858_8 --> 0 - 1 Original Alignment GCTTCCTGCTACCTGAAACAG-GGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGCGGCAAGTACCAGGATGCAGAGACCCTGTACAAGG-GATCCTTACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATggtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from CESAR GCTTCCTGCTACCTGAAACAG-GGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGCGGCAAGTACCAGGATGCAGAGACCCTGTACAAG-GGATCCTTACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATggtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Spaln_aa2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGCGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGGATCCTTACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Spaln_nt2Genome GCTTCCTGCTACCTGAAACAG-GGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGCGGCAAGTACCAGGATGCAGAGACCCTGTACAAGG-GATCCTTACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Pairagon GCTTCCTGCTACCTGAAACAG-GGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGCGGCAAGTACCAGGATGCAGAGACCCTGTACAAGG-GATCCTTACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Exonerate_protein2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGCGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGGATCCTTACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Exonerate_coding2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGCGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGGATCCTTACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from GeneWise GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGCGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGGATCCTTACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAG-TGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAG-TGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAG-TGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAG-TGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Exonerate_protein2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Exonerate_coding2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from GeneWise GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACCTAGAGCCCATGCAGGAACTTATGTCCC-CCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCggctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from CESAR CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACCTAGAGCCCATGCAGGAACTTATGTCC-CCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCggctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Spaln_aa2Genome CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATAcCTAGAGCCCATGCAGGAACTTATGTCCCC-CACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Spaln_nt2Genome CTCTGTGTGATAC-TAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACCTAGAGCCCATGCAGGAACTTATGT-CCCCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Pairagon CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACCTAGAGCCCATGCAGGAACTTATGTCCC-CCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACCTAGAGCCCATGCAGGAACTTATGTCCCCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACCTAGAGCCCATGCAGGAACTTATGTCCCCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCGCGGAG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACCTAGAGCCCATGCAGGAACTTATGTCCCCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGA------------------ATGgtagcacctcccggctccttccttgccccagccctctacagacccttgatgaaatagctgagg #### Loxl4_ID8569_6 --> 0 - 1 Original Alignment CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTC-ATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCCATCTCAGCCAGTGTCGTGTGTCACCAGCTTG-CTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAggtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from CESAR CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTC-ATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCCATCTCAGCCAGTGTCGTGTGTCACCAGCTT-GCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAggtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Spaln_aa2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Spaln_nt2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCT-CATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCCATCTCAGCCAGTGTCGTGTGTCACCAGCTT-GCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Pairagon CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCT-CATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCCATCTCAGCCAGTGTCGTGTGTCACCAGCTT-GCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Exonerate_protein2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Exonerate_coding2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from GeneWise CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt #### Loxl4_ID8570_5 --> 1 - 0 Original Alignment gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCA-GGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacaggCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCACGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTC-CCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from CESAR gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCA-GGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacaggCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCACGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTC-CCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Spaln_aa2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCA-GGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAcGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCC-CACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Spaln_nt2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCA-GGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCACGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCA-GGTCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Pairagon GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCA-GGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCACGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCA-GGTCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Exonerate_protein2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCA-GGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGG--CCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCACGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCC---CACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Exonerate_coding2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGG---CATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCA--CGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCC-CACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from GeneWise GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGG---CCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCACGG---TGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTAC-TGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACCTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCT-CTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTAC-TGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACCTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCC-TCTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTAC-TGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACcTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTC-TGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTA-CTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACCTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCT-CTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTA-CTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACCTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCT-CTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTAC-TGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCC--TACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACCTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTC---TGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTAC-TGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCC--TACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACCTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTC---TGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCC-TACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACCTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTC-TGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga #### Ltbp3_ID1251_3 --> 2 - 0 Original Alignment tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTG-CTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagtgCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCCTGCCACATCCCAAGCCCCAGCACCCGAGGC-CCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from CESAR tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTG-CTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagtgCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCCTGCCACATCCCAAGCCCCAGCACCCGAGGC-CCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Spaln_aa2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Spaln_nt2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTG-CTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCCTGCCACATCCCAAGCCCCAGCACCCGAGGCC-CCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Pairagon TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTG-CTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCCTGCCACATCCCAAGCCCCAGCACCCGAGGCC-CCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Exonerate_protein2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Exonerate_coding2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from GeneWise TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagctGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTA-TGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagctGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGT-ATGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGcCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAT-GTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTA-TGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTA-TGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGT--AGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAT---GTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGT--AGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAT---GTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGC-CAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAT-GTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAACGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCT-ACCCCCTCGGCCTTACCCAggtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from CESAR CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAACGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACC-TACCCCCTCGGCCTTACCCAggtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Spaln_aa2Genome GTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagccagtgagTGAACGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTA-CCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Spaln_nt2Genome CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAACGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCT-ACCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Pairagon CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAACGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCT-ACCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Exonerate_protein2genome CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC--TCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAACGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTA---CCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Exonerate_coding2genome ACCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC--TCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAACGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTA---CCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from GeneWise gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagccagtgagtgaacgagcgatcagtgcagcagagccaccccactaccaccacctaccccctcggccttacccaggtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGC-TCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagatGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATG-GGGTGCAGGGGGCCGCTCATGCGTGggtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGC-TCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagatGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCAT-GGGGTGCAGGGGGCCGCTCATGCGTGggtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGC-TCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCcTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGG-GGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGG-CTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATG-GGGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGG-CTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATG-GGGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGC-TCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCAC--GTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGG---GGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGC-TCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCAC--GTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGG---GGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGC-TCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGG-GGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACT-CAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcagggccaacgtgattatctccatgaaatctagtttccctaatttctagagGTGGAGCAGCCCCACCATAAGAAAGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTATTGGCTACTAATGTCACTCCAGCAGGAATGCTGTTGCTCTCTGGGAGCTG-TTGGGGAGACCACTGTGAAATCTATCCCTGTCCAGTCTACAGCTCAggtagatgggatatacccaccccttcccagagctcccttttggcctgaaac Alignment from CESAR agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACT-CAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcagggccaacgtgattatctccatgaaatctagtttccctaatttctagagGTGGAGCAGCCCCACCATAAGAAAGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTATTGGCTACTAATGTCACTCCAGCAGGAATGCTGTTGCTCTCTGGGAGCT-GTTGGGGAGACCACTGTGAAATCTATCCCTGTCCAGTCTACAGCTCAggtagatgggatatacccaccccttcccagagctcccttttggcctgaaac Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggccaacgtgattatctccatgaaatctagtttccctaatttctagAGGTGGAGCAGCCCCACCATAAGAAAGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTATTGGCTACTAATGTCACTCCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCAGTCTACAGCTCAGgtagatgggatatacccaccccttcccagagctcccttttggcctgaaac Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACT-CAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggccaacgtgattatctccatgaaatctagtttccctaatttctagAGGTGGAGCAGCCCCACCATAAGAAAGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTATTGGCTACTAATGTCACTCCAGCAGGAATGCTGTTGCTCTCTGGGAGCT-GTTGGGGAGACCACTGTGAAATCTATCCCTGTCCAGTCTACAGCTCAGgtagatgggatatacccaccccttcccagagctcccttttggcctgaaac Alignment from Pairagon AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACT-CAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggccaacgtgattatctccatgaaatctagtttccctaatttctagAGGTGGAGCAGCCCCACCATAAGAAAGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTATTGGCTACTAATGTCACTCCAGCAGGAATGCTGTTGCTCTCTGGGAGCT-GTTGGGGAGACCACTGTGAAATCTATCCCTGTCCAGTCTACAGCTCAGgtagatgggatatacccaccccttcccagagctcccttttggcctgaaac Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggccaacgtgattatctccatgaaatctagtttccctaatttctagAGGTGGAGCAGCCCCACCATAAGAAAGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTATTGGCTACTAATGTCACTCCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCAGTCTACAGCTCAGgtagatgggatatacccaccccttcccagagctcccttttggcctgaaac Alignment from Exonerate_coding2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggccaacgtgattatctccatgaaatctagtttccctaatttctagAGGTGGAGCAGCCCCACCATAAGAAAGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTATTGGCTACTAATGTCACTCCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCAGTCTACAGCTCAGgtagatgggatatacccaccccttcccagagctcccttttggcctgaaac Alignment from GeneWise AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggccaacgtgattatctccatgaaatctagtttccctaatttctagAGGTGGAGCAGCCCCACCATAAGAAAGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTATTGGCTACTAATGTCACTCCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCAGTCTACAGCTCAGgtagatgggatatacccaccccttcccagagctcccttttggcctgaaac #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAA-GGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagccGAATTTCACAGCCTGTGTCCTGATGGGAAACGGCTACACTCAGGACAACAACATTGTGAACT-TGGCATTCCTGCCCACCGTggtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAA-GGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagccGAATTTCACAGCCTGTGTCCTGATGGGAAACGGCTACACTCAGGACAACAACATTGTGAAC-TTGGCATTCCTGCCCACCGTggtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAA-GGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAAcGGCTACACTCAGGACAACAACATTGTGAACTT-GGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGAT-GGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAACGGCTACACTCAGGACAACAACATTGTGAACT-TGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAA-GGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAACGGCTACACTCAGGACAACAACATTGTGAACT-TGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAACGGCTACACTCAGGACAACAACATTGTGAACTTGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Exonerate_coding2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAACGGCTACACTCAGGACAACAACATTGTGAACTTGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAACGGCTACACTCAGGACAACAACATTGTGAACTTGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTG-AACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagacATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGCAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCT-CTACGATGGCAACCTGCTGGAGTGCGTGggtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccaa Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTG-AACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagacATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGCAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTC-TCTACGATGGCAACCTGCTGGAGTGCGTGggtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctc Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTG-AACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGcAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTC-TACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccaa Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTG-AACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGCAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCT-CTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccaa Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTG-AACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGCAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCT-CTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccaa Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTG-AACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTC--TACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGCAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTC---TACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccaa Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTG-AACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTC--TACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGCAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTC---TACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccaa Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGT-GTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGCAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTC-TACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccaa #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGC-CAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC cagtgggtagttcctgcctccctcctgtagtttatgtgatttctttgcagagCACGCCCCAGAAAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAAGACGGCATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCGT-CCCACCACGTGGCACTggtgagttacccctgagggactatcttgcttccttctctcctcagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGC-CAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC cagtgggtagttcctgcctccctcctgtagtttatgtgatttctttgcagagCACGCCCCAGAAAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAAGACGGCATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCG-TCCCACCACGTGGCACTggtgagttacccctgagggactataacaaaatcttaatcttccagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGC-CGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cagtgggtagttcctgcctccctcctgtagtttatgtgatttctttgcagAGCACGCCCCAGAAAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAAGACGGCATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCCAGGGcCGTGGCTGGGGTACCCAGTGCAGACCGTC-CCACCACGTGGCACTGgtgagttacccctgagggactatcttgcttccttctctcctcagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGC-CAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cagtgggtagttcctgcctccctcctgtagtttatgtgatttctttgcagAGCACGCCCCAGAAAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAAGACGGCATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCGT-CCCACCACGTGGCACTGgtgagttacccctgagggactatcttgcttccttctctcctcagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCG-CCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cagtgggtagttcctgcctccctcctgtagtttatgtgatttctttgcagAGCACGCCCCAGAAAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAAGACGGCATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCGT-CCCACCACGTGGCACTGgtgagttacccctgagggactatcttgcttccttctctcctcagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cagtgggtagttcctgcctccctcctgtagtttatgtgatttctttgcagAGCACGCCCCAGAAAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAAGACGGCATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCGTCCCACCACGTGGCACTGgtgagttacccctgagggactatcttgcttccttctctcctcagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cagtgggtagttcctgcctccctcctgtagtttatgtgatttctttgcagAGCACGCCCCAGAAAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAAGACGGCATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCGTCCCACCACGTGGCACTGgtgagttacccctgagggactatcttgcttccttctctcctcagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cagtgggtagttcctgcctccctcctgtagtttatgtgatttctttgcagAGCACGCCCCAGAAAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAAGACGGCATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCGTCCCACCACGTGGCACTGgtgagttacccctgagggactatcttgcttccttctctcctcagGGTCCC #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCCACAGCTGCTACTTGAGCAGCCTGGATCTGC-GCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttttcct Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCCACAGCTGCTACTTGAGCAGCCTGGATCTG-CGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttattgc Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCCACAGCTGCTACTTGAGCAGCCTGGATCTGCGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttttcct Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCG-CAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCCACAGCTGCTACTTGAGCAGCCTGGATCTGC-GCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttttcct Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCT-CCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCCACAGCTGCTACTTGAGCAGCCTGGATCTGC-GCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttttcct Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCCACAGCTGCTACTTGAGCAGCCTGGATCTGCGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttttcct Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCCACAGCTGCTACTTGAGCAGCCTGGATCTGCGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttttcct Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCCACAGCTGCTACTTGAGCAGCCTGGATCTGCGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttttcct #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcaggcTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCGCTGCGGGAATGGC-GGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from CESAR gcTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcaggcTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCGCTGCGGGAATGG-CGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCGG-AGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCGCTGCGGGAATGGC-GGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Exonerate_coding2genome TTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgCAGGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from GeneWise GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGT-CTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCCTTGCCGTAGCCTATGGTGTGGCTGTAAACA-GTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGT-CTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCCTTGCCGTAGCCTATGGTGTGGCTGTAA-ACAGTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCCTTGCCGTAGCCTATGGTGTGGCTGTAAACAGTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGT-CTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCCTTGCCGTAGCCTATGGTGTGGCTGT-AAACAGTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGT-CTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCCTTGCCGTAGCCTATGGTGTGGCTGTAAAC-AGTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCCTTGCCGTAGCCTATGGTGTGGCTGTAAACAGTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCT---TGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGT--CCTTGCCGTAGCCTATGGTGTGGCTGTAAACAG-TTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCCTTGCCGTAGCCTATGGTGTGGCTGTAAACAGTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCC-GACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagacTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTCGCCTCCATCCTGCAGCAGTTGG-AGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGG-CCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagacTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTCGCCTCCATCCTGCAGCAGTTGG-AGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGG-CCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTCGCCTCCATCCTGCAGCAGTTGG-AGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGG-CCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTCGCCTCCATCCTGCAGCAGTTGG-AGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCAC-CTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaatgcctagataacttaacctgattcttctgtctctattgcagGAACTACTGAGCCGGGAGGAGGAACTGACGCGGGCTGCCCGTGTGCAGCGGTCCCAGGCGGAGCAGCTGCGACGACGTGAGCACCTTGCTGGCACAATGGGAGCTGGAGGTATTTG-GCGTGAGCTAACACTGCTACTGCAGCAGGTGGACCGAGAACGGCCACACGTGCACCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGTGGAGAACGCATCAGCATGCCCCTGggtaacggctggggctccgatgcctgtctgcaatttgctattggaaccagg Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCAC-CTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaatgcctagataacttaacctgattcttctgtctctattgcagGAACTACTGAGCCGGGAGGAGGAACTGACGCGGGCTGCCCGTGTGCAGCGGTCCCAGGCGGAGCAGCTGCGACGACGTGAGCACCTTGCTGGCACAATGGGAGCTGGAGGTATTT-GGCGTGAGCTAACACTGCTACTGCAGCAGGTGGACCGAGAACGGCCACACGTGCACCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGTGGAGAACGCATCAGCATGCCCCTGggtaacggctggggctccgatgcctgtctgcaatttgctattggaaccagg Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaatgcctagataacttaacctgattcttctgtctctattgcagGAACTACTGAGCCGGGAGGAGGAACTGACGCGGGCTGCCCGTGTGCAGCGGTCCCAGGCGGAGCAGCTGCGACGACGTGAGCACCTTGCTGGCACAATGGGAGCTGGAGGTATTTGGCGTGAGCTAACACTGCTACTGCAGCAGGTGGACCGAGAACGGCCACACGTGCACCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGTGGAGAACGCATCAGCATGCCCCTGGgtaacggctggggctccgatgcctgtctgcaatttgctattggaaccagg Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACC-TGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaatgcctagataacttaacctgattcttctgtctctattgcagGAACTACTGAGCCGGGAGGAGGAACTGACGCGGGCTGCCCGTGTGCAGCGGTCCCAGGCGGAGCAGCTGCGACGACGTGAGCACCTTGCTGGCACAATGGGAGCTGGAGGTATTTG-GCGTGAGCTAACACTGCTACTGCAGCAGGTGGACCGAGAACGGCCACACGTGCACCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGTGGAGAACGCATCAGCATGCCCCTGGgtaacggctggggctccgatgcctgtctgcaatttgctattggaaccagg Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACC-TGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaatgcctagataacttaacctgattcttctgtctctattgcagGAACTACTGAGCCGGGAGGAGGAACTGACGCGGGCTGCCCGTGTGCAGCGGTCCCAGGCGGAGCAGCTGCGACGACGTGAGCACCTTGCTGGCACAATGGGAGCTGGAGGTATTTG-GCGTGAGCTAACACTGCTACTGCAGCAGGTGGACCGAGAACGGCCACACGTGCACCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGTGGAGAACGCATCAGCATGCCCCTGGgtaacggctggggctccgatgcctgtctgcaatttgctattggaaccagg Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaatgcctagataacttaacctgattcttctgtctctattgcagGAACTACTGAGCCGGGAGGAGGAACTGACGCGGGCTGCCCGTGTGCAGCGGTCCCAGGCGGAGCAGCTGCGACGACGTGAGCACCTTGCTGGCACAATGGGAGCTGGAGGTATTTGGCGTGAGCTAACACTGCTACTGCAGCAGGTGGACCGAGAACGGCCACACGTGCACCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGTGGAGAACGCATCAGCATGCCCCTGGgtaacggctggggctccgatgcctgtctgcaatttgctattggaaccagg Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaatgcctagataacttaacctgattcttctgtctctattgcagGAACTACTGAGCCGGGAGGAGGAACTGACGCGGGCTGCCCGTGTGCAGCGGTCCCAGGCGGAGCAGCTGCGACGACGTGAGCACCTTGCTGGCACAATGGGAGCTGGAGGTATTTGGCGTGAGCTAACACTGCTACTGCAGCAGGTGGACCGAGAACGGCCACACGTGCACCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGTGGAGAACGCATCAGCATGCCCCTGGgtaacggctggggctccgatgcctgtctgcaatttgctattggaaccagg Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaatgcctagataacttaacctgattcttctgtctctattgcagGAACTACTGAGCCGGGAGGAGGAACTGACGCGGGCTGCCCGTGTGCAGCGGTCCCAGGCGGAGCAGCTGCGACGACGTGAGCACCTTGCTGGCACAATGGGAGCTGGAGGTATTTGGCGTGAGCTAACACTGCTACTGCAGCAGGTGGACCGAGAACGGCCACACGTGCACCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGTGGAGAACGCATCAGCATGCCCCTGGgtaacggctggggctccgatgcctgtctgcaatttgctattggaaccagg #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGA-GAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagtgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAGATTCAAGCAATGGACGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGC-TGGGGAGGCCCAAAACGGGaggtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGA-GAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagtgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAGATTCAAGCAATGGACGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCA-AGCTGGGGAGGCCCAAAACGGGaggtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGA-GAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAGATTCAAGCAATGGAcGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCTGGGGAGGCCCAAAACGGGAGGTAAgtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGA-GAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAGATTCAAGCAATGGACGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGC-TGGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGA-GAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAGATTCAAGCAATGGACGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAG-CTGGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGA-GAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAG--CCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAGATTCAAGCAATGGACGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCT---GGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGA-GAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAG--CCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAGATTCAAGCAATGGACGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCT---GGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGA-GAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAGG-- gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAGATTCAAGCAATGGACGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCTGGGGAGGCCCAAAACGGGAGGTAAgtgcttcagcaccctaaaaccctggtgttctactctttggggccct #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctcttaccctcttgtgcccattgtgccaaccgcgtctgctctctctgcaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTAC-GGAGGTTTACCACggtacattccagactccatggacatggcctttcccgatcccaacatagggg Alignment from CESAR gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctcttaccctcttgtgcccattgtgccaaccgcgtctgctctctctgcaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTA-CGGAGGTTTACCACggtacattccagactccatggacatggcctttcccgatcccaacatagggg Alignment from Spaln_aa2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctcttaccctcttgtgcccattgtgccaaccgcgtctgctctctctgcagGAATGACCGATTGcTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTACG-GAGGTTTACCACGgtacattccagactccatggacatggcctttcccgatcccaacatagggg Alignment from Spaln_nt2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctcttaccctcttgtgcccattgtgccaaccgcgtctgctctctctgcagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTAC-GGAGGTTTACCACGgtacattccagactccatggacatggcctttcccgatcccaacatagggg Alignment from Pairagon GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctcttaccctcttgtgcccattgtgccaaccgcgtctgctctctctgcagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTAC-GGAGGTTTACCACGgtacattccagactccatggacatggcctttcccgatcccaacatagggg Alignment from Exonerate_protein2genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCAC ctcttaccctcttgtgcccattgtgccaaccgcgtctgctctctctgcagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTACGGAGGTTTACCACGgtacattccagactccatggacatggcctttcccgatcccaacatagggg Alignment from Exonerate_coding2genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCAC ctcttaccctcttgtgcccattgtgccaaccgcgtctgctctctctgcagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTACGGAGGTTTACCACGgtacattccagactccatggacatggcctttcccgatcccaacatagggg Alignment from GeneWise GAATGACCGA-TTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctcttaccctcttgtgcccattgtgccaaccgcgtctgctctctctgcagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTACG-GAGGTTTACCACGgtacattccagactccatggacatggcctttcccgatcccaacatagggg #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagcaGACTTTGGGGTGTCAGGCCGAGCTGACAGCATCTGTGGCCAAAAGACGTT-TTTCATTGGCACTCCATACtggtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from CESAR cgGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagcaGACTTTGGGGTGTCAGGCCGAGCTGACAGCATCTGTGGCCAAAAGACGT-TTTTCATTGGCACTCCATACtggtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCcGAGCTGACAGCATCTGTGGCCAAAAGACGTTT-TTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGG-CGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCCGAGCTGACAGCATCTGTGGCCAAAAGACGTT-TTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Pairagon CGGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCCGAGCTGACAGCATCTGTGGCCAAAAGACGTT-TTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCCGAGCTGACAGCATCTGTGGCCAAAAGACGTTTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCCGAGCTGACAGCATCTGTGGCCAAAAGACGTTTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCCGAGCTGACAGCATCTGTGGCCAAAAGACGTTTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcaggACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAGAACCCCA-GAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from CESAR gACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcaggACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAGAACC-CCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCcCTCAAGCTGGCCCTAACCAAGAACCCCAGAAG-AGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTT-CCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAGAACCCCA-GAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Pairagon GACCCAGAATTTCCACCACTT-CCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAGAACCCC-AGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAGAACCCCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAGAACCCCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAGAACCCCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCT-CCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTA-TGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCT-CCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCT-ATGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTATGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCT-CCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTA-TGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCT-CCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTA-TGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTATGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTATGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTATGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATC-GGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCC-CACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATC-GGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCC-CCACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCA-TCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCC-CACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCA-TCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCC-CACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from GeneWise AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG GACACCTGCTAATGAGACCAGGGTCAGCTGTCCCCTTTCTC------CAGGAGCTGGACTCCCCGGATGATGCCATTCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCT-GGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcaggtACCCTGTCAGCGCCTCCAGCTCGGCCCAGGCAGCCCCGCATTGCTACCTACTG-TTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from CESAR gtACCCTGTCAGCACCTCCAGCT-GGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcaggtACCCTGTCAGCGCCTCCAGCTCGGCCCAGGCAGCCCCGCATTGCTACCTACT-GTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTCGGCCCAGGCAGCCCCGCATTGCTACCTACTGTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCT-GGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTCGGCCCAGGCAGCCCCGCATTGCTACCTACTG-TTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCT-GGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTCGGCCCAGGCAGCCCCGCATTGCTACCTACTG-TTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTCGGCCCAGGCAGCCCCGCATTGCTACCTACTGTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Exonerate_coding2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTCGGCCCAGGCAGCCCCGCATTGCTACCTACTGTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTCGGCCCAGGCAGCCCCGCATTGCTACCTACTGTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGC-TGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCCTGCCCCCTGCAGATCCATGCTGCTGTCACTT-GGTTCACCCTGTGACTCGAggtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGC-TGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCCTGCCCCCTGCAGATCCATGCTGCTGTCACTT-GGTTCACCCTGTGACTCGAggtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGC-TGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCcTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGTT-CACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGC-TGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGG-TTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGG-CTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCCTGCCCCCTGCAGATCCATGCTGCTGTCACTT-GGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTG---CCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGC--CTGCCCCCTGCAGATCCATGCTGCTGTCACTTG-GTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACCGGCAGTACG-TTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG agggatgctgtgaggctgagcccctgccagcctctctgctgtccacacagttCGAAATCCCTATACCGGCAGTACACTTCCTGCTGGCCGCCCTGCCTGCGAGCCTGCTACTGCTGC-ATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAGgtgagtgaccagaggacccttgagaaggaggtggggagcctgcagaataa Alignment from CESAR ttCGAAACCCCTATACCGGCAGTACG-TTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG agggatgctgtgaggctgagcccctgccagcctctctgctgtccacacagttCGAAATCCCTATACCGGCAGTACACTTCCTGCTGGCCGCCCTGCCTGCGAGCCTGCTACTGCTGC-ATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAGgtgagtgaccagaggacccttgagaaggaggtggggagcctgcagaataa Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACG-TTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG agggatgctgtgaggctgagcccctgccagcctctctgctgtccacacagTTCGAAATCCCTATACCGGCAGTACAcTTCCTGCTGGCCGCCCTGCCTGCGAGCCTGCTACTGCTGCA-TGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAGgtgagtgaccagaggacccttgagaaggaggtggggagcctgcagaataa Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCGGCAGTACG-TTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG agggatgctgtgaggctgagcccctgccagcctctctgctgtccacacagTTCGAAATCCCTATACCGGCAGTACACTTCCTGCTGGCCGCCCTGCCTGCGAGCCTGCTACTGCTGC-ATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAGgtgagtgaccagaggacccttgagaaggaggtggggagcctgcagaataa Alignment from Pairagon TTCGAAACCCCTATACCGGCAGTACG-TTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG agggatgctgtgaggctgagcccctgccagcctctctgctgtccacacagTTCGAAATCCCTATACCGGCAGTACACTTCCTGCTGGCCGCCCTGCCTGCGAGCCTGCTACTGCTGC-ATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAGgtgagtgaccagaggacccttgagaaggaggtggggagcctgcagaataa Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG agggatgctgtgaggctgagcccctgccagcctctctgctgtccacacagTTCGAAATCCCTATACCGGCAGTACACTTCCTGCTGGCCGCCCTGCCTGCGAGCCTGCTACTGCTGCATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAGgtgagtgaccagaggacccttgagaaggaggtggggagcctgcagaataa Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTT---CCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG agggatgctgtgaggctgagcccctgccagcctctctgctgtccacacagTTCGAAATCCCTATACCGGCAGTACA--CTTCCTGCTGGCCGCCCTGCCTGCGAGCCTGCTACTGCTGCA-TGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAGgtgagtgaccagaggacccttgagaaggaggtggggagcctgcagaataa Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG agggatgctgtgaggctgagcccctgccagcctctctgctgtccacacagTTCGAAATCCCTATACCGGCAGTACACTTCCTGCTGGCCGCCCTGCCTGCGAGCCTGCTACTGCTGCATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAGgtgagtgaccagaggacccttgagaaggaggtggggagcctgcagaataa #### Map4k2_ID1651_30 --> 2 - 0 Original Alignment tgTGTCTGCAGGATAGTGTG-CTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG ataattgtagagtgcagggatagtgtagtttctgttttatttattttcagtgTGTCTGCAGGATAGTGTGCCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAA-CCTCGATACCAACGAGgtacgtggccctagggccctaattgcctccctgagcccctattttgagag Alignment from CESAR tgTGTCTGCAGGATAGTGTG-CTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG ataattgtagagtgcagggatagtgtagtttctgttttatttattttcagtgTGTCTGCAGGATAGTGTGCCTGGCGTTCTGGAGCCATGGCATGCAGGGCC-GAACCTCGATACCAACGAGgtacgtggccctagggccctaattgcctccctgagcccctattttgagag Alignment from Spaln_aa2Genome TGTGTCTGCAGGATAGTGTG-CTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG ataattgtagagtgcagggatagtgtagtttctgttttatttattttcagTGTGTCTGCAGGATAGTGTGcCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAC-CTCGATACCAACGAGgtacgtggccctagggccctaattgcctccctgagcccctattttgagag Alignment from Spaln_nt2Genome TGTGTCTGCAGGATAGTGTG-CTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG ataattgtagagtgcagggatagtgtagtttctgttttatttattttcagTGTGTCTGCAGGATAGTGTGCCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAA-CCTCGATACCAACGAGgtacgtggccctagggccctaattgcctccctgagcccctattttgagag Alignment from Pairagon TGTGTCTGCAGGATAGTGTG-CTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG ataattgtagagtgcagggatagtgtagtttctgttttatttattttcagTGTGTCTGCAGGATAGTGTGCCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAA-CCTCGATACCAACGAGgtacgtggccctagggccctaattgcctccctgagcccctattttgagag Alignment from Exonerate_protein2genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG ataattgtagagtgcagggatagtgtagtttctgttttatttattttcagTGTGTCTGCAGGATAGTGTGCCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAACCTCGATACCAACGAGgtacgtggccctagggccctaattgcctccctgagcccctattttgagag Alignment from Exonerate_coding2genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG ataattgtagagtgcagggatagtgtagtttctgttttatttattttcagTGTGTCTGCAGGATAGTGTGCCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAACCTCGATACCAACGAGgtacgtggccctagggccctaattgcctccctgagcccctattttgagag Alignment from GeneWise GTGGTGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGA---AGCCTCGATACCAACGAG ataattgtagagtgcagggatagtgtagtttctgttttatttattttcagTGTGTCTGC---AGGATAGTGTGCCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAACCTCGATACCAACGAGGTACgtggccctagggccctaattgcctccctgagcccctattttgagag #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgcccccacccaccgtactcactgtacgcttggctatttcttcatgtaggaGAGGTGTTTGATTACCCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTC-AGCCAAATTCCGCCAGgtaagtgtgtctccactctgagctgtagactcagcattcccttcggggat Alignment from CESAR gaGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgcccccacccaccgtactcactgtacgcttggctatttcttcatgtaggaGAGGTGTTTGATTACCCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTC-AGCCAAATTCCGCCAGgtaagtgtgtctccactctgagctgtagactcagcattcccttcggggat Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgcccccacccaccgtactcactgtacgcttggctatttcttcatgtagGAGAGGTGTTTGATTACcCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCA-GCCAAATTCCGCCAGgtaagtgtgtctccactctgagctgtagactcagcattcccttcggggat Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTA-CCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgcccccacccaccgtactcactgtacgcttggctatttcttcatgtagGAGAGGTGTTTGATTACCCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTC-AGCCAAATTCCGCCAGgtaagtgtgtctccactctgagctgtagactcagcattcccttcggggat Alignment from Pairagon GAGAGGTGTTTGATTA-CCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgcccccacccaccgtactcactgtacgcttggctatttcttcatgtagGAGAGGTGTTTGATTACCCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTC-AGCCAAATTCCGCCAGgtaagtgtgtctccactctgagctgtagactcagcattcccttcggggat Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgcccccacccaccgtactcactgtacgcttggctatttcttcatgtagGAGAGGTGTTTGATTACCCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCAGCCAAATTCCGCCAGgtaagtgtgtctccactctgagctgtagactcagcattcccttcggggat Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgcccccacccaccgtactcactgtacgcttggctatttcttcatgtagGAGAGGTGTTTGATTACCCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCAGCCAAATTCCGCCAGgtaagtgtgtctccactctgagctgtagactcagcattcccttcggggat Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgcccccacccaccgtactcactgtacgcttggctatttcttcatgtagGAGAGGTGTTTGATTACCCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCAGCCAAATTCCGCCAGgtaagtgtgtctccactctgagctgtagactcagcattcccttcggggat #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTC-AACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCCAACGAGAAGACAAAGGACATCAAAGAAG-CATTCCTCTGCCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTC-AACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCCAACGAGAAGACAAAGGACATCAAAG-AAGCATTCCTCTGCCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCCAACGAGAAGACAAAGGACATCAAAGAAGCATTCCTCTGCCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTT-CAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCCAACGAGAAGACAAAGGACATCAAAGAAG-CATTCCTCTGCCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTT-CAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCCAACGAGAAGACAAAGGACATCAAAGAA-GCATTCCTCTGCCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCCAACGAGAAGACAAAGGACATCAAAGAAGCATTCCTCTGCCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCCAACGAGAAGACAAAGGACATCAAAGAAGCATTCCTCTGCCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCCAACGAGAAGACAAAGGACATCAAAGAAGCATTCCTCTGCCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGG-CAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTTCATACTTGCTGAAGGCAG-TGCTGGGATTGAGAAGGGAGCCCGGCATACAggtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGG-CAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTTCATACTTGCTGAAGGCAG-TGCTGGGATTGAGAAGGGAGCCCGGCATACAggtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTTCATACTTGCTGAAGGCAGTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGG-CAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTTCATACTTGCTGAAGGCAG-TGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGG-CAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTTCATACTTGCTGAAGGCAG-TGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTTCATACTTGCTGAAGGCAGTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTTCATACTTGCTGAAGGCAGTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTTCATACTTGCTGAAGGCAGTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggctggggtcaggccactctacgctcccaccccttatatttcaggGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGCAACCCAGGAGTTGTAGTATACGTGAACCCACGCCCATGCG-CATGCCACGAATAGTGGCAGAATACcgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggctggggtcaggccactctacgctcccaccccttatatttcaggGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGCAACCCAGGAGTTGTAGTATACGTGAACCCACGCCCATGCG-CATGCCACGAATAGTGGCAGAATACcgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGcAACCCAGGAGTTGTAGTATACGTGAACCCACGCCCATGCGC-ATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGCAACCCAGGAGTTGTAGTATACGTGAACCCACGCCCATGCGC-ATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGCAACCCAGGAGTTGTAGTATACGTGAACCCACGCCCATGCG-CATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGCAACCCAGGAGTTGTAGTATACGTGAACCCACGCCCATGCGCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGCAACCCAGGAGTTGTAGTATACGTGAACCCACGCCCATGCGCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGCAACCCAGGAGTTGTAGTATACGTGAACCCACGCCCATGCGCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAA-GGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg ttaatgtccatgcagattccttcccactcctgcttctctctccatgaaagGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAACGGGGAGATCAGAGTCGGTTGCAAATTCCAAGCTG-GATCCCAGATCGTTTGGCAGAGggtaagtaacagaaccagaagtgcttgaacatgaaattttctgttgatagc Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAA-GGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg ttaatgtccatgcagattccttcccactcctgcttctctctccatgaaagGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAACGGGGAGATCAGAGTCGGTTGCAAATTCCAAGCT-GGATCCCAGATCGTTTGGCAGAGggtaagtaacagaaccagaagtgcttgaacatgaaattttctgttgatagc Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ttaatgtccatgcagattccttcccactcctgcttctctctccatgaaagGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAACGGGGAGATCAGAGTCGGTTGCAAATTCCAAGCTGGATCCCAGATCGTTTGGCAGAGGgtaagtaacagaaccagaagtgcttgaacatgaaattttctgttgatagc Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAA-GGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ttaatgtccatgcagattccttcccactcctgcttctctctccatgaaagGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAACGGGGAGATCAGAGTCGGTTGCAAATTCCAAGCTG-GATCCCAGATCGTTTGGCAGAGGgtaagtaacagaaccagaagtgcttgaacatgaaattttctgttgatagc Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAA-GGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ttaatgtccatgcagattccttcccactcctgcttctctctccatgaaagGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAACGGGGAGATCAGAGTCGGTTGCAAATTCCAAGCTG-GATCCCAGATCGTTTGGCAGAGGgtaagtaacagaaccagaagtgcttgaacatgaaattttctgttgatagc Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ttaatgtccatgcagattccttcccactcctgcttctctctccatgaaagGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAACGGGGAGATCAGAGTCGGTTGCAAATTCCAAGCTGGATCCCAGATCGTTTGGCAGAGGgtaagtaacagaaccagaagtgcttgaacatgaaattttctgttgatagc Alignment from Exonerate_coding2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ttaatgtccatgcagattccttcccactcctgcttctctctccatgaaagGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAACGGGGAGATCAGAGTCGGTTGCAAATTCCAAGCTGGATCCCAGATCGTTTGGCAGAGGgtaagtaacagaaccagaagtgcttgaacatgaaattttctgttgatagc Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ttaatgtccatgcagattccttcccactcctgcttctctctccatgaaagGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAACGGGGAGATCAGAGTCGGTTGCAAATTCCAAGCTGGATCCCAGATCGTTTGGCAGAGGgtaagtaacagaaccagaagtgcttgaacatgaaattttctgttgatagc #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAG-ATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacaggaGAATCAGATAATCGAAACCAACAGAAGATGGAGCATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACC-ACAGATTGATCAATTTCTCGTGGTGGCCcggtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAG-ATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacaggaGAATCAGATAATCGAAACCAACAGAAGATGGAGCATGAAAGTCTGGGACCCGGACAACCCCCTCACAGAC-CACAGATTGATCAATTTCTCGTGGTGGCCcggtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGCATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCACAGATTGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAG-ATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGCATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACC-ACAGATTGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAG-ATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGCATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACC-ACAGATTGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGCATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCACAGATTGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGCATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCACAGATTGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGCATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCACAGATTGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCG-AGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagcGCTGTGGGAACCTTTGTGCAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGC-AAGCTTGCACATGAGTGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from CESAR aGCTGTGGGAACCTTCGCG-AGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagcGCTGTGGGAACCTTTGTGCAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAG-CAAGCTTGCACATGAGTGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCG-AGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGcAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCA-AGCTTGCACATGAGT------GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCG-AGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGCAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGC-AAGCTTGCACATGAGTGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Pairagon AGCTGTGGGAACCTTCGCG-AGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGCAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAG-CAAGCTTGCACATGAGTGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGCAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCAAGCTTGCACATGAGT------GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGCAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCAAGCTTGCACATGAGT------GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGCAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCAAGCTTGCACATGAGTGCAGCA------TCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACC-CTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCCTAGTACCACAGGGAGGCCCGGTGCTCT-TCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACC-CTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCCTAGTACCACAGGGAGGCCCGGTGCTC-TTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCCTAGTACCACAGGGAGGCCCGGTGCTCTTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAAC-CCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCCTAGTACCACAGGGAGGCCCGGTGCTCT-TCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAAC-CCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCCTAGTACCACAGGGAGGCCCGGTGCTCT-TCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCCTAGTACCACAGGGAGGCCCGGTGCTCTTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCCTAGTACCACAGGGAGGCCCGGTGCTCTTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCCTAGTACCACAGGGAGGCCCGGTGCTCTTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACA-GTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from CESAR CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTAC-AGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Spaln_aa2Genome CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGcTCACTTGCAAGCATAGTCCAGTTTTATTACAG-TGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Spaln_nt2Genome CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACA-GTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Pairagon CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACA-GTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACAGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACAGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACAGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGA-AACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagtgGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGACAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCA-TATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGA-AACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagtgGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGACAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCA-TATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGACAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGA-AACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGACAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCAT-ATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGA-AACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGACAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCA-TATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGACAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGA-AACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGACAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATA-TGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGACAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGC-TCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCCTCACAGCCCGCAGCCAAGCGTCAGAAACTAA-CCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCaggtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGC-TCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCCTCACAGCCCGCAGCCAAGCGTCAGAAAC-TAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCaggtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCCTCACAGCCCGCAGCCAAGCGTCAGAAACTAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Spaln_nt2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAG-CTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCCTCACAGCCCGCAGCCAAGCGTCAGAAACT-AACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAG-CTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCCTCACAGCCCGCAGCCAAGCGTCAGAAACT-AACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCCTCACAGCCCGCAGCCAAGCGTCAGAAACTAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Exonerate_coding2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCCTCACAGCCCGCAGCCAAGCGTCAGAAACTAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCCTCACAGCCCGCAGCCAAGCGTCAGAAACTAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAG-CTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAATTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCT-TGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAG-CTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAATTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCC-TTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAG-CTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAATTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGcCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTTGGG-GATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAG-CTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAATTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCT-TGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAG-CTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAATTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCT-TGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAG-CTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCC--TGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAATTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTT---GGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAG-CTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCC--TGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAATTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTT---GGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAG-CTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAATTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTT-GGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTCACCTAC-CACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa agggaaactggcaaagtggccttgcttattaaactctgctttctctgcaggCTTGGCAACTTCACCTACCCACATCCCGGTCAGCAGCAGCACACCACTGCACC-CAGCCTGACCCTGCAGATGaagtgggtgctggtgtgtgactatgtgtgtgggggaccgtgcgaatacaaac Alignment from CESAR gCTTGGCAACTTCACCTAC-CACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa agggaaactggcaaagtggccttgcttattaaactctgctttctctgcaggCTTGGCAACTTCACCTACCCACATCCCGGTCAGCAGCAGCACACCACTGCAC-CCAGCCTGACCCTGCAGATGaagtgggtgctggtgtgtgactatgtgtgtgggggaccgtgcgaatacaaac Alignment from Spaln_aa2Genome GCTTGGCAACTTCACCTAC-CACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA agggaaactggcaaagtggccttgcttattaaactctgctttctctgcagGCTTGGCAACTTCACCTACcCACATCCCGGTCAGCAGCAGCACACCACTGCACCC-AGCCTGACCCTGCAGATGAAgtgggtgctggtgtgtgactatgtgtgtgggggaccgtgcgaatacaaac Alignment from Spaln_nt2Genome GCTTGGCAACTTCACCTA-CCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA agggaaactggcaaagtggccttgcttattaaactctgctttctctgcagGCTTGGCAACTTCACCTACCCACATCCCGGTCAGCAGCAGCACACCACTGCACC-CAGCCTGACCCTGCAGATGAAgtgggtgctggtgtgtgactatgtgtgtgggggaccgtgcgaatacaaac Alignment from Pairagon GCTTGGCAACTTCACCTA-CCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA agggaaactggcaaagtggccttgcttattaaactctgctttctctgcagGCTTGGCAACTTCACCTACCCACATCCCGGTCAGCAGCAGCACACCACTGCACC-CAGCCTGACCCTGCAGATGAAgtgggtgctggtgtgtgactatgtgtgtgggggaccgtgcgaatacaaac Alignment from Exonerate_protein2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA agggaaactggcaaagtggccttgcttattaaactctgctttctctgcagGCTTGGCAACTTCACCTACCCACATCCCGGTCAGCAGCAGCACACCACTGCACCCAGCCTGACCCTGCAGATGAAgtgggtgctggtgtgtgactatgtgtgtgggggaccgtgcgaatacaaac Alignment from Exonerate_coding2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA agggaaactggcaaagtggccttgcttattaaactctgctttctctgcagGCTTGGCAACTTCACCTACCCACATCCCGGTCAGCAGCAGCACACCACTGCACCCAGCCTGACCCTGCAGATGAAgtgggtgctggtgtgtgactatgtgtgtgggggaccgtgcgaatacaaac Alignment from GeneWise agggaaactggcaaagtggccttgcttattaaactctgctttctctgcaggcttggcaacttcacctacccacatcccggtcagcagcagcacaccactgcacccagcctgaccctgcagatgaagtgggtgctggtgtgtgactatgtgtgtgggggaccgtgcgaatacaaac #### Myrf_ID2717_20 --> 2 - 1 Original Alignment ttACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGAT-CCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAg tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagtcACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCCTGCACTTGGCCCCACACTTACTCCTGCTC-AAGCCCTAGTTCTAACCCCAAGCACTCAggtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from CESAR ttACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGAT-CCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAg tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagtcACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCCTGCACTTGGCCCCACACTTACTCCTG-CTCAAGCCCTAGTTCTAACCCCAAGCACTCAggtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Spaln_aa2Genome TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCCTGCACTTGGCCCCACACTTACTCCTGCTCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Spaln_nt2Genome TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATC-CTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCCTGCACTTGGCCCCACACTTACTCCTGCT-CAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Pairagon TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGAT-CCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCCTGCACTTGGCCCCACACTTACTCCTGCT-CAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Exonerate_protein2genome TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCCTGCACTTGGCCCCACACTTACTCCTGCTCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Exonerate_coding2genome TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCCTGCACTTGGCCCCACACTTACTCCTGCTCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from GeneWise TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCCTGCACTTGGCCCCACACTTACTCCTGCTCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg #### Myrf_ID2718_19 --> 1 - 1 Original Alignment cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTC-CGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccagctccaaagcttccctgtgcctctatacacccttgcctccgcttcagcAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCCGACAGTCCTCCATGACCACCGGACTACCAG-CACACAGCCCTCTTTGCTGCTGggtaagagtctggggggatagggtggggctgatggctgggtgtgcagcccc Alignment from CESAR cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTC-CGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccagctccaaagcttccctgtgcctctatacacccttgcctccgcttcagcAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCCGACAGTCCTCCATGACCACCGGACTAC-CAGCACACAGCCCTCTTTGCTGCTGggtaagagtctggggggatagggtggggctgatggctgggtgtgcagcccc Alignment from Spaln_aa2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatacacccttgcctccgcttcagCAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCCGACAGTCCTCCATGACCACCGGACTACCAGCACACAGCCCTCTTTGCTGCTGGgtaagagtctggggggatagggtggggctgatggctgggtgtgcagcccc Alignment from Spaln_nt2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCT-CCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatacacccttgcctccgcttcagCAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCCGACAGTCCTCCATGACCACCGGACTACCAG-CACACAGCCCTCTTTGCTGCTGGgtaagagtctggggggatagggtggggctgatggctgggtgtgcagcccc Alignment from Pairagon CAGGTCCAGCCAGAGCTTCGGGACCACACAGCT-CCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatacacccttgcctccgcttcagCAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCCGACAGTCCTCCATGACCACCGGACTACCA-GCACACAGCCCTCTTTGCTGCTGGgtaagagtctggggggatagggtggggctgatggctgggtgtgcagcccc Alignment from Exonerate_protein2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatacacccttgcctccgcttcagCAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCCGACAGTCCTCCATGACCACCGGACTACCAGCACACAGCCCTCTTTGCTGCTGGgtaagagtctggggggatagggtggggctgatggctgggtgtgcagcccc Alignment from Exonerate_coding2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatacacccttgcctccgcttcagCAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCCGACAGTCCTCCATGACCACCGGACTACCAGCACACAGCCCTCTTTGCTGCTGGgtaagagtctggggggatagggtggggctgatggctgggtgtgcagcccc Alignment from GeneWise CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatacacccttgcctccgcttcagCAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCCGACAGTCCTCCATGACCACCGGACTACCAGCACACAGCCCTCTTTGCTGCTGGgtaagagtctggggggatagggtggggctgatggctgggtgtgcagcccc #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTG-GGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGCGGGGCTGTGAAGGAGTTATGCAAACTGACAG-CAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from CESAR GAGCGAATCTTCATGGAGAATGTG-GGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGCGGGGCTGTGAAGGAGTTATGCAAACTGACA-GCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGCGGGGCTGTGAAGGAGTTATGCAAACTGACAGCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGG-GGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGCGGGGCTGTGAAGGAGTTATGCAAACTGACAG-CAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTG-GGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGCGGGGCTGTGAAGGAGTTATGCAAACTGACAG-CAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGCGGGGCTGTGAAGGAGTTATGCAAACTGACAGCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGCGGGGCTGTGAAGGAGTTATGCAAACTGACAGCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGCGGGGCTGTGAAGGAGTTATGCAAACTGACAGCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAG-CTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCCTAAAGAGGATCTCTCGGATGCGGTTAGTGC-CTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAggtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from CESAR GTGGACACCACCGAGCAG-CTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCCTAAAGAGGATCTCTCGGATGCGGTTAGTG-CCTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAggtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAG-CTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACcCTAAAGAGGATCTCTCGGATGCGGTTAGTGCC-TACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGC-TGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCCTAAAGAGGATCTCTCGGATGCGGTTAGTGC-CTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Pairagon GTGGACACCACCGAGCA-GCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCCTAAAGAGGATCTCTCGGATGCGGTTAGTGC-CTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCCTAAAGAGGATCTCTCGGATGCGGTTAGTGCCTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCCTAAAGAGGATCTCTCGGATGCGGTTAGTGCCTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCCTAAAGAGGATCTCTCGGATGCGGTTAGTGCCTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCAC-CATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATG-GGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCAC-CATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGAT-GGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCA-TGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATG-GGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCA-CCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATG-GGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCA---TGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCAC--CCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGA-TGGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAG---GCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCCTGGCCGTGTGGG---CATCAACACCGACCCGCCAGATGGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTG-GTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ggatggctaaagatacccctgagtgttacctctattgtcatctctgccaggTATTTCATGCTGCGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACA-CCTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttagaggcagtgtcctccccctcccccaagctg Alignment from CESAR gTATTTCATGCTG-GTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ggatggctaaagatacccctgagtgttacctctattgtcatctctgccaggTATTTCATGCTGCGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACA-CCTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttagaggcagtgtcctccccctcccccaagctg Alignment from Spaln_aa2Genome GTATTTCATGCTG-GTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ggatggctaaagatacccctgagtgttacctctattgtcatctctgccagGTATTTCATGCTGcGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACAC-CTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttagaggcagtgtcctccccctcccccaagctg Alignment from Spaln_nt2Genome GTATTTCATGCTG-GTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ggatggctaaagatacccctgagtgttacctctattgtcatctctgccagGTATTTCATGCTGCGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACAC-CTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttagaggcagtgtcctccccctcccccaagctg Alignment from Pairagon GTATTTCATGCTG-GTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ggatggctaaagatacccctgagtgttacctctattgtcatctctgccagGTATTTCATGCTGCGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACAC-CTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttagaggcagtgtcctccccctcccccaagctg Alignment from Exonerate_protein2genome GTATTTCATGCTG-GTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACA--CTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ggatggctaaagatacccctgagtgttacctctattgtcatctctgccagGTATTTCATGCTGCGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACCTG---GCAGCCCAGATCTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttagaggcagtgtcctccccctcccccaagctg Alignment from Exonerate_coding2genome GTATTTCATGCTGGT---GGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ggatggctaaagatacccctgagtgttacctctattgtcatctctgccagGTATTTCATGCTG--CGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACAC-CTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttagaggcagtgtcctccccctcccccaagctg Alignment from GeneWise GTATTTCATGCTG-GTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG ggatggctaaagatacccctgagtgttacctctattgtcatctctgccagGTATTTCATGCTGCGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACCTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttagaggcagtgtcctccccctcccccaagctg #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAAC-AGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacaggTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACCAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTG-TGTGGAGTGCGGGGATGAAGTCCTGTACtggtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAAC-AGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacaggTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACCAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTT-GTGTGGAGTGCGGGGATGAAGTCCTGTACtggtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACCAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGTGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGG-AAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACCAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGG-TTTGTGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAA-CAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACCAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTG-TGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACCAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGTGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACCAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGTGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACCAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGTGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTGAGTGTCCACAACAGG-CTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg aagactggagagggcttaagttctaattgaaccctggcctgtgtctccagtGAGGTAAAAGTGAGTGTTCACAACAGGCTTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAAG-GGCTGTGGAGCCTggtaagcctgtttgcactctgccccaccattcttgagtcttcctgggtcct Alignment from CESAR tGAGGTGAAAGTGAGTGTCCACAACAGG-CTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg aagactggagagggcttaagttctaattgaaccctggcctgtgtctccagtGAGGTAAAAGTGAGTGTTCACAACAGGCTTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAAG-GGCTGTGGAGCCTggtaagcctgtttgcactctgccccaccattcttgagtcttcctgggtcct Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGTGTCCACAACAGG-CTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG aagactggagagggcttaagttctaattgaaccctggcctgtgtctccagTGAGGTAAAAGTGAGTGTTCACAACAGGcTTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAAGGGCT-GTGGAGCCTGgtaagcctgtttgcactctgccccaccattcttgagtcttcctgggtcct Alignment from Spaln_nt2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGC-TGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG aagactggagagggcttaagttctaattgaaccctggcctgtgtctccagTGAGGTAAAAGTGAGTGTTCACAACAGGCTTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCA-AGGGCTGTGGAGCCTGgtaagcctgtttgcactctgccccaccattcttgagtcttcctgggtcct Alignment from Pairagon TGAGGTGAAAGTGAGTGTCCACAACAGGC-TGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG aagactggagagggcttaagttctaattgaaccctggcctgtgtctccagTGAGGTAAAAGTGAGTGTTCACAACAGGCTTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCA-AGGGCTGTGGAGCCTGgtaagcctgtttgcactctgccccaccattcttgagtcttcctgggtcct Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGG-CTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGG--GCTGTGGAGCCTG aagactggagagggcttaagttctaattgaaccctggcctgtgtctccagTGAGGTAAAAGTGAGTGTTCACAACAGGCTTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAAGGGCT---GTGGAGCCTGgtaagcctgtttgcactctgccccaccattcttgagtcttcctgggtcct Alignment from Exonerate_coding2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCT---GGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG aagactggagagggcttaagttctaattgaaccctggcctgtgtctccagTGAGGTAAAAGTGAGTGTTCACAACAGG--CTTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCA-AGGGCTGTGGAGCCTGgtaagcctgtttgcactctgccccaccattcttgagtcttcctgggtcct Alignment from GeneWise aagactggagagggcttaagttctaattgaaccctggcctgtgtctccagtgaggtaaaagtgagtgttcacaacaggcttggagctgaggacctcttccaatgtcctgggcatcatccaagggctgtggagcctggtaagcctgtttgcactctgccccaccattcttgagtcttcctgggtcct #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggaggggtcggccctgagcagccttttgaaaaaccatgtccagccAATGCTACTCTCCGGCGCACAGGGAACACCGCCTGTACAAAGTGTGATAT-CTCTTCCACCAAAGAGgtgagcaggggtagggggggactatgtagtataggttgggcaggactgga Alignment from CESAR ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggaggggtcggccctgagcagccttttgaaaaaccatgtccagccAATGCTACTCTCCGGCGCACAGGGAACACCGCCTGTACAAAGTGTGATA-TCTCTTCCACCAAAGAGgtgagcaggggtagggggggactatgtagtataggttgggcaggactgga Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggaggggtcggccctgagcagccttttgaaaaaccatgtccagCCAATGCTACTCTCCGGcGCACAGGGAACACCGCCTGTACAAAGTGTGATATC-TCTTCCACCAAAGAGgtgagcaggggtagggggggactatgtagtataggttgggcaggactgga Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggaggggtcggccctgagcagccttttgaaaaaccatgtccagCCAATGCTACTCTCCGGCGCACAGGGAACACCGCCTGTACAAAGTGTGAT-ATCTCTTCCACCAAAGAGgtgagcaggggtagggggggactatgtagtataggttgggcaggactgga Alignment from Pairagon CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggaggggtcggccctgagcagccttttgaaaaaccatgtccagCCAATGCTACTCTCCGGCGCACAGGGAACACCGCCTGTACAAAGTGTGATA-TCTCTTCCACCAAAGAGgtgagcaggggtagggggggactatgtagtataggttgggcaggactgga Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggaggggtcggccctgagcagccttttgaaaaaccatgtccagCCAATGCTACTCTCCGGCGCACAGGGAACACCGCCTGTACAAAGTGTGATATCTCTTCCACCAAAGAGgtgagcaggggtagggggggactatgtagtataggttgggcaggactgga Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggaggggtcggccctgagcagccttttgaaaaaccatgtccagCCAATGCTACTCTCCGGCGCACAGGGAACACCGCCTGTACAAAGTGTGATATCTCTTCCACCAAAGAGgtgagcaggggtagggggggactatgtagtataggttgggcaggactgga Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggaggggtcggccctgagcagccttttgaaaaaccatgtccagCCAATGCTACTCTCCGGCGCACAGGGAACACCGCCTGTACAAAGTGTGATATCTCTTCCACCAAAGAGgtgagcaggggtagggggggactatgtagtataggttgggcaggactgga #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTAT-GACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATCGACAACTGGATCCGATATACCAACCGCACTA-TCCAGTATATGGACTGGTTCCCaggtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTAT-GACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATCGACAACTGGATCCGATATACCAACCGCACT-ATCCAGTATATGGACTGGTTCCCaggtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATCGACAACTGGATCCGATATACCAACCGCACTATCCAGTATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Spaln_nt2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTAT-GACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATCGACAACTGGATCCGATATACCAACCGCACTA-TCCAGTATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTAT-GACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATCGACAACTGGATCCGATATACCAACCGCACTA-TCCAGTATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTAT-GACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCA ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATCGACAACTGGATCCGATATACCAACCGCACTATCCAGTATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Exonerate_coding2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTAT-GACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCA ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATCGACAACTGGATCCGATATACCAACCGCACTATCCAGTATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATCGACAACTGGATCCGATATACCAACCGCACTATCCAGTATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAG-CTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagtCCTCTGCAGGTACGAATGGTCAATGACCAGCTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCC-AGAGGAGAGGCACTACaggtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAG-CTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagtCCTCTGCAGGTACGAATGGTCAATGACCAGCTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTT-TCCAGAGGAGAGGCACTACaggtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAG-CTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGcTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGC-TTTCCAGAGGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGC-TGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGCTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCC-AGAGGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGC-TGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGCTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTT-CCAGAGGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGCTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCAGAGGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGCTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCAGAGGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGCTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCAGAGGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAG-ATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG tccccttcatggtggaaggccctctggctatcactcttttgcttttctaggtGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCCGTCCAGCTGAGATTGACTCCCTGTGGGAGCATCAGCAAGCAGATAGAAGGCCACACCA-TTGTGCCCTGGGTGATGGGGCTGCCTGGCCAGTTCAGgtatgcactgccctactgtctcacaggaagggcagggcatcgacagccca Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAG-ATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG tccccttcatggtggaaggccctctggctatcactcttttgcttttctaggtGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCCGTCCAGCTGAGATTGACTCCCTGTGGGAGCATCAGCAAGCAGATAGAAGGCCACACCA-TTGTGCCCTGGGTGATGGGGCTGCCTGGCCAGTTCAGgtatgcactgccctactgtctcacaggaagggcagggcatcgacagccca Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG tccccttcatggtggaaggccctctggctatcactcttttgcttttctagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCCGTCCAGCTGAGATTGACTCCCTGTGGGAGCATCAGCAAGCAGATAGAAGGCCACACCATTGTGCCCTGGGTGATGGGGCTGCCTGGCCAGTTCAGgtatgcactgccctactgtctcacaggaagggcagggcatcgacagccca Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAG-ATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG tccccttcatggtggaaggccctctggctatcactcttttgcttttctagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCCGTCCAGCTGAGATTGACTCCCTGTGGGAGCATCAGCAAGCAGATAGAAGGCCACACCA-TTGTGCCCTGGGTGATGGGGCTGCCTGGCCAGTTCAGgtatgcactgccctactgtctcacaggaagggcagggcatcgacagccca Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAG-ATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG tccccttcatggtggaaggccctctggctatcactcttttgcttttctagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCCGTCCAGCTGAGATTGACTCCCTGTGGGAGCATCAGCAAGCAGATAGAAGGCCACACCA-TTGTGCCCTGGGTGATGGGGCTGCCTGGCCAGTTCAGgtatgcactgccctactgtctcacaggaagggcagggcatcgacagccca Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG tccccttcatggtggaaggccctctggctatcactcttttgcttttctagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCCGTCCAGCTGAGATTGACTCCCTGTGGGAGCATCAGCAAGCAGATAGAAGGCCACACCATTGTGCCCTGGGTGATGGGGCTGCCTGGCCAGTTCAGgtatgcactgccctactgtctcacaggaagggcagggcatcgacagccca Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGA-GATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG tccccttcatggtggaaggccctctggctatcactcttttgcttttctagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCCGTCCAGCTGAGATTGACTCCCTGTGGGAGCATCAGCAAGCAGATAGAAGGCCACACCAT-TGTGCCCTGGGTGATGGGGCTGCCTGGCCAGTTCAGgtatgcactgccctactgtctcacaggaagggcagggcatcgacagccca Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG tccccttcatggtggaaggccctctggctatcactcttttgcttttctagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCCGTCCAGCTGAGATTGACTCCCTGTGGGAGCATCAGCAAGCAGATAGAAGGCCACACCATTGTGCCCTGGGTGATGGGGCTGCCTGGCCAGTTCAGgtatgcactgccctactgtctcacaggaagggcagggcatcgacagccca #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGC-TGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctataggtGGTGTCACAGGTGGCCTGGGACAACCTCCTTGCTGTGACTCCTGGTGGCTCATCTA-TCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from CESAR gtGGTGTCACAGGTGGC-TGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctataggtGGTGTCACAGGTGGCCTGGGACAACCTCCTTGCTGTGACTCCTGGTGGCTCATCT-ATCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Spaln_aa2Genome GGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctataggtggtgtcacagGTGGCCTGGGACAACCTCCTTGCTGTGACTCCTGGTGGCTCATCTAT-CCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGG-CTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCCTGGGACAACCTCCTTGCTGTGACTCCTGGTGGCTCATCTA-TCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Pairagon GTGGTGTCACAGGTGG-CTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCCTGGGACAACCTCCTTGCTGTGACTCCTGGTGGCTCATCTA-TCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGC-TGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCT--ACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCCTGGGACAACCTCCTTGCTGTGACTCCTGGTGGCTCATCTAT---CCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTG---GGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGC--CTGGGACAACCTCCTTGCTGTGACTCCTGGTGGCTCATCTAT-CCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from GeneWise ------TGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctataggtggtgtcacagGTGGCCTGGGACAACCTCCTTGCTGTGACTCCTGGTGGCTCATCTAT-CCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATC-TCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg ctcctcattgctcctctggaaatccacctctgttggctctggtcccttaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTCAACATCCTCTGGCCATGTCAACCACCCCTGCACTGTGG-GGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTggtgagtctggagccaactcaggggtagtgcttgggagagggcacagtggg Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATC-TCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg ctcctcattgctcctctggaaatccacctctgttggctctggtcccttaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTCAACATCCTCTGGCCATGTCAACCACCCCTGCACTGTG-GGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTggtgagtctggagccaactcaggggtagtgcttgggagagggcacagtggg Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcattgctcctctggaaatccacctctgttggctctggtcccttagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTCAACATCCTCTGGCCATGTCAACCACCCCTGCACTGTGGGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtgagtctggagccaactcaggggtagtgcttgggagagggcacagtggg Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACAT-CTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcattgctcctctggaaatccacctctgttggctctggtcccttagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTCAACATCCTCTGGCCATGTCAACCACCCCTGCACTGTGG-GGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtgagtctggagccaactcaggggtagtgcttgggagagggcacagtggg Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACAT-CTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcattgctcctctggaaatccacctctgttggctctggtcccttagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTCAACATCCTCTGGCCATGTCAACCACCCCTGCACTGTGG-GGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtgagtctggagccaactcaggggtagtgcttgggagagggcacagtggg Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcattgctcctctggaaatccacctctgttggctctggtcccttagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTCAACATCCTCTGGCCATGTCAACCACCCCTGCACTGTGGGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtgagtctggagccaactcaggggtagtgcttgggagagggcacagtggg Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACAT---CTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcattgctcctctggaaatccacctctgttggctctggtcccttagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTCAAC--ATCCTCTGGCCATGTCAACCACCCCTGCACTGTGGG-GAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtgagtctggagccaactcaggggtagtgcttgggagagggcacagtggg Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTGGT------------------------------------------------ ctcctcattgctcctctggaaatccacctctgttggctctggtcccttagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTCAACATCCTCTGGCCATGTCAACCACCCCTGCACTGTGGGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGGTGAGTCTGGAGCCAACTCAGGGGTAGTGCTTGGGAGAGGGCACAGTGGG #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGTGAAGGC-CCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggggggggttgcctctccttattacaatcactgtcccacttttgtttcagCGAGGCTTCAGATTCCGATATGGCTGTGAAGGCCCCCTCCCATGGAGGTTTGCCGGGTGCATCCA-TGAGAAGGGCCGGAAGACCTATCCTACTGTCAAGgtaagatcagatgacacctgatggtgggtaaggtgtatggggcaactact Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCC-TCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggggggggttgcctctccttattacaatcactgtcccacttttgtttcagCGAGGCTTCAGATTCCGATATGGCTGTGAAGGCCCCCTCCCATGGAGGTTTGCCGGGTGCATCC-ATGAGAAGGGCCGGAAGACCTATCCTACTGTCAAGgtaagatcagatgacacctgatggtgggtaaggtgtatggggcaactact Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggggggggttgcctctccttattacaatcactgtcccacttttgtttcagCGAGGCTTCAGATTCCGATATGGCTGTGAAGGCCCCCTCCCATGGAGGTTTGCCGGGTGCATCCATGAGAAGGGCCGGAAGACCTATCCTACTGTCAAGgtaagatcagatgacacctgatggtgggtaaggtgtatggggcaactact Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCC-CTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggggggggttgcctctccttattacaatcactgtcccacttttgtttcagCGAGGCTTCAGATTCCGATATGGCTGTGAAGGCCCCCTCCCATGGAGGTTTGCCGGGTGCATCCA-TGAGAAGGGCCGGAAGACCTATCCTACTGTCAAGgtaagatcagatgacacctgatggtgggtaaggtgtatggggcaactact Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGG-CCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggggggggttgcctctccttattacaatcactgtcccacttttgtttcagCGAGGCTTCAGATTCCGATATGGCTGTGAAGGCCCCCTCCCATGGAGGTTTGCCGGGTGCATCCA-TGAGAAGGGCCGGAAGACCTATCCTACTGTCAAGgtaagatcagatgacacctgatggtgggtaaggtgtatggggcaactact Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggggggggttgcctctccttattacaatcactgtcccacttttgtttcagCGAGGCTTCAGATTCCGATATGGCTGTGAAGGCCCCCTCCCATGGAGGTTTGCCGGGTGCATCCATGAGAAGGGCCGGAAGACCTATCCTACTGTCAAGgtaagatcagatgacacctgatggtgggtaaggtgtatggggcaactact Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggggggggttgcctctccttattacaatcactgtcccacttttgtttcagCGAGGCTTCAGATTCCGATATGGCTGTGAAGGCCCCCTCCCATGGAGGTTTGCCGGGTGCATCCATGAGAAGGGCCGGAAGACCTATCCTACTGTCAAGgtaagatcagatgacacctgatggtgggtaaggtgtatggggcaactact Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggggggggttgcctctccttattacaatcactgtcccacttttgtttcagCGAGGCTTCAGATTCCGATATGGCTGTGAAGGCCCCCTCCCATGGAGGTTTGCCGGGTGCATCCATGAGAAGGGCCGGAAGACCTATCCTACTGTCAAGgtaagatcagatgacacctgatggtgggtaaggtgtatggggcaactact #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGT-CTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTG-GTCTGTAGGACCCAAGGACATGACTGCTcagtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGT-CTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCT-GGTCTGTAGGACCCAAGGACATGACTGCTcagtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGT-CTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTcCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGG-TCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGT-CTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTG-GTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGT-CTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTG-GTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAG-AACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagaTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGCAACATGATGGAGATTATGATCCAGAAACTTCAGA-GCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAggtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAG-AACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagaTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGCAACATGATGGAGATTATGATCCAGAAACTTCAG-AGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAggtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGCAACATGATGGAGATTATGATCCAGAAACTTCAGAGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAG-AACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGCAACATGATGGAGATTATGATCCAGAAACTTCAGAG-CAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAG-AACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGCAACATGATGGAGATTATGATCCAGAAACTTCAGA-GCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGCAACATGATGGAGATTATGATCCAGAAACTTCAGAGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAA---CATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAG--CAACATGATGGAGATTATGATCCAGAAACTTCAGAG-CAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGCAACATGATGGAGATTATGATCCAGAAACTTCAGAGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGCAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGG-TAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGCAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGG-GTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGCAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGCAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCG-GGTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGCAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCG-GGTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGCAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGCAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGCAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTC-TCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg agggtctgatccatattaggtttcgacactctgcttccttccctccacagacAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCCTCCCAGCCCTTTGGGGGTGGAACCCACATGG-TGGAGGTTCTGGGGGCTCTGCTGGGGGTTATGGAGGTGCTGGAGGAggtagaagggtgcaagtggcagggggaaggatggaggagataagggaagct Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTC-TCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg agggtctgatccatattaggtttcgacactctgcttccttccctccacagacAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCCTCCCAGCCCTTTGGGGGTGGAACCCACA-TGGTGGAGGTTCTGGGGGCTCTGCTGGGGGTTATGGAGGTGCTGGAGGAggtagaagggtgcaagtggcagggggaaggatggaggagataagggaagct Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatccatattaggtttcgacactctgcttccttccctccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCCTCCCAGCCCTTTGGGGGTGGAACCCACATGGTGGAGGTTCTGGGGGCTCTGCTGGGGGTTATGGAGGTGCTGGAGGAGgtagaagggtgcaagtggcagggggaaggatggaggagataagggaagct Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTT-CTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatccatattaggtttcgacactctgcttccttccctccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCCTCCCAGCCCTTTGGGGGTGGAACCCACAT-GGTGGAGGTTCTGGGGGCTCTGCTGGGGGTTATGGAGGTGCTGGAGGAGgtagaagggtgcaagtggcagggggaaggatggaggagataagggaagct Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTT-CTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatccatattaggtttcgacactctgcttccttccctccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCCTCCCAGCCCTTTGGGGGTGGAACCCACAT-GGTGGAGGTTCTGGGGGCTCTGCTGGGGGTTATGGAGGTGCTGGAGGAGgtagaagggtgcaagtggcagggggaaggatggaggagataagggaagct Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatccatattaggtttcgacactctgcttccttccctccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCCTCCCAGCCCTTTGGGGGTGGAACCCACATGGTGGAGGTTCTGGGGGCTCTGCTGGGGGTTATGGAGGTGCTGGAGGAGgtagaagggtgcaagtggcagggggaaggatggaggagataagggaagct Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatccatattaggtttcgacactctgcttccttccctccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCCTCCCAGCCCTTTGGGGGTGGAACCCACATGGTGGAGGTTCTGGGGGCTCTGCTGGGGGTTATGGAGGTGCTGGAGGAGgtagaagggtgcaagtggcagggggaaggatggaggagataagggaagct Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatccatattaggtttcgacactctgcttccttccctccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCCTCCCAGCCCTTTGGGGGTGGAACCCACATGGTGGAGGTTCTGGGGGCTCTGCTGGGGGTTATGGAGGTGCTGGAGGAGgtagaagggtgcaagtggcagggggaaggatggaggagataagggaagct #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACC-GATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tctgggagagtcctggatggcacctcactgactaacctctttcctgacaggtGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGG-TCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAggtaaggctcaggaatgctgggggttagcatgcaccacttgttcctttcct Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACC-GATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tctgggagagtcctggatggcacctcactgactaacctctttcctgacaggtGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAG-GTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAggtaaggctcaggaatgctgggggttagcatgcaccacagtgctgttctgc Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACC-GATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCcGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGTCCC-CAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccacttgttcctttcct Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACA-CCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGG-TCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccacttgttcctttcct Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACA-CCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGG-TCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccacttgttcctttcct Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccacttgttcctttcct Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACAC---CGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGAT--ACCCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGT-CCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccacttgttcctttcct Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccacttgttcctttcct #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagcCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCCACGTCATTTATCATGCTCAGTACCTCGGCG-AATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagcCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCCACGTCATTTATCATGCTCAGTACCTCGGC-GAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCCACGTCATTTATCATGCTCAGTACCTCGGCGAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCCACGTCATTTATCATGCTCAGTACCTCGGCG-AATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAG-CCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCCACGTCATTTATCATGCTCAGTACCTCGGCG-AATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGC--GTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCCACGTCATTTATCATGCTCAGTACCTCGGCGA---ATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGC--GTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCCACGTCATTTATCATGCTCAGTACCTCGGCGA---ATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCCACGTCATTTATCATGCTCAGTACCTCGGCGAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAA-GTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAACGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTAC-TCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAA-GTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAACGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTA-CTCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAA-GTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAcGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACT-CTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAA-GTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAACGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTAC-TCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAA-GTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAACGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTAC-TCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAACGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACTCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGT---GGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAA--CGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACT-CTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAACGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACTCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGA-AACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGACAACACACCACTCCACCTGGCAGCTGGACTCGGGT-CCCAACTCTTACTCGCCTCCTTCTAAAGGCTggtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGA-AACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGACAACACACCACTCCACCTGGCAGCTGGACTCGGGT-CCCAACTCTTACTCGCCTCCTTCTAAAGGCTggtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGACAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGA-AACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGACAACACACCACTCCACCTGGCAGCTGGACTC-GGGTCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGA-AACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGACAACACACCACTCCACCTGGCAGCTGGACTCGGGT-CCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGACAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAA---CACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGA--CAACACACCACTCCACCTGGCAGCTGGACTCGGGTC-CCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGACAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTG-CTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCC-ACCCAGCCCTGCAggtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTG-CTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGG-CCCACCCAGCCCTGCAggtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTG-CTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGcCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGC-CCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTG-CTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGG-CCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTG-CTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGG-CCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTG-CTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCA agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTG-CTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCA agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTG-GGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGCGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCC-GTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTG-GGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGCGGGTTGAGAAGCCTGGTGGACACATACAGGAAAA-CCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGCGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTG-GGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGCGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCC-GTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTG-GGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGCGGGTTGAGAAGCCTGGTGGACACATACAGGAAAA-CCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGCGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGCGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGCGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaataggtGATGTTTTGAATATTCGACCCGATGAAATTTTATACACATCTCTTCCAGACACTGT-CACATTACATGCAggtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from CESAR gtGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaataggtGATGTTTTGAATATTCGACCCGATGAAATTTTATACACATCTCTTCCAGACACTG-TCACATTACATGCAggtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Spaln_aa2Genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTcGACCCGATGAAATTTTATACACATCTCTTCCAGACACTGTC-ACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Spaln_nt2Genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTCGACCCGATGAAATTTTATACACATCTCTTCCAGACACTG-TCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Pairagon GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTCGACCCGATGAAATTTTATACACATCTCTTCCAGACACTG-TCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Exonerate_protein2genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTCGACCCGATGAAATTTTATACACATCTCTTCCAGACACTGTCACATTACATGCAGGtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Exonerate_coding2genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTCGACCCGATGAAATTTTATACACATCTCTTCCAGACACTGTCACATTACATGCAGGtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAA---TTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTCGACCCGATGAAATTTTATACACATCTCTTCCAGACACTGTC---ACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATT-TACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTCTACTGCATGCTATACTCGGAAGGGCCAGAAGGTC-TTTTACTGCCAATAACTACCCTATTaggtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATT-TACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTCTACTGCATGCTATACTCGGAAGGGCCAGAAG-GTCTTTTACTGCCAATAACTACCCTATTaggtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTCTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATT-TACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTCTACTGCATGCTATACTCGGAAGGGCCAGAAGGT-CTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATT-TACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTCTACTGCATGCTATACTCGGAAGGGCCAGAAGG-TCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATT-TACTGCATGCTATACTCAGAAGGTCCAGAAGGC--CCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTCTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCT---TTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATT-TACTGCATGCTATACTCAGAAGGTCCAGAAGGC--CCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTCTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCT---TTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTCTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAA-CTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagatCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACCTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGG-CTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAA-CTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagatCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACCTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGG-CTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACCTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAAC-AAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACCTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCT-GGGGCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAA-CTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACCTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGG-CTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAA-CTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCT--GGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACCTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGC---TACTGGGCAGGAAACCCTGTGTTCACTGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACT-GGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACCTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGC-TACTGGGCAGGAAACCCTGTGTTCACTGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAA-CTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACCTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGC-TACTGGGCAGGAAACCCTGTGTTCACTGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCCTCCAACTCCAACCACCTGTCACCTTCCGCC-GAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTggtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from CESAR CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCCTCCAACTCCAACCACCTGTCACCTTCCGC-CGAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTggtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Spaln_aa2Genome CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATcCTCCAACTCCAACCACCTGTCACCTTCCGCCG-AAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTGgtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Spaln_nt2Genome CTCAGTGTGGATGATT-TCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCCTCCAACTCCAACCACCTGTCACCTTCCGCC-GAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTGgtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Pairagon CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCCTCCAACTCCAACCACCTGTCACCTTCCGCC-GAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTGgtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCCTCCAACTCCAACCACCTGTCACCTTCCGCCGAAGTCTGGTTCTGGCCCAGTTCGGATCCATCAGATTGGTAGGAAGAgtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTT---CCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGAT--CCTCCAACTCCAACCACCTGTCACCTTCCGCCG-AAGTCTGGTTCTGGCCCAGTTCGGATCCATCAGATTGGTAGGAAGAgtgggtcctctactcccgacttgccccagtctcagatccta Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCCTCCAACTCCAACCACCTGTCACCTTCCGCCGAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTGgtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCC-AGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggggacttgtatgtagttgcataactgacacagccccttccacccctcagAAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCAT-CATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtaaataatgttacttttgactgacagttaagatggaccataaaggtgat Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCC-AGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggggacttgtatgtagttgcataactgacacagccccttccacccctcagAAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCA-TCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtaaataatgttacttttgactgacagttaagatggaccataaaggtgat Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCC-AGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggggacttgtatgtagttgcataactgacacagccccttccacccctcagAAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCcAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATC-ATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtaaataatgttacttttgactgacagttaagatggaccataaaggtgat Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTC-TTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggggacttgtatgtagttgcataactgacacagccccttccacccctcagAAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTC-ATCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtaaataatgttacttttgactgacagttaagatggaccataaaggtgat Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTG-CCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggggacttgtatgtagttgcataactgacacagccccttccacccctcagAAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCA-TCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtaaataatgttacttttgactgacagttaagatggaccataaaggtgat Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCC-AGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCG--TTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggggacttgtatgtagttgcataactgacacagccccttccacccctcagAAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATC---ATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtaaataatgttacttttgactgacagttaagatggaccataaaggtgat Alignment from Exonerate_coding2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGC---CAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggggacttgtatgtagttgcataactgacacagccccttccacccctcagAAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTT--GCCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATC-ATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtaaataatgttacttttgactgacagttaagatggaccataaaggtgat Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggggacttgtatgtagttgcataactgacacagccccttccacccctcagAAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtaaataatgttacttttgactgacagttaagatggaccataaaggtgat #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACCTGAAAATTGGCTCCTACACAGGCCCCCTGC-GCAC---GTTGTCTACTCAGGGggtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from CESAR AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACCTGAAAATTGGCTCCTACACAGGCCCCCTG-CGCAC---GTTGTCTACTCAGGGggtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Spaln_aa2Genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAAcCTGAAAATTGGCTCCTACACAGGCCCCCTGCGCACGTTGTCTACTCAGGGGGTATgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Spaln_nt2Genome AAAACTGGAAAAC-TGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACCTGAAAATTGGCTCCTACACAGGCCCCCTGC-GCACG---TTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Pairagon AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACCTGAAAATTGGCTCCTACACAGGCCCCCTGC-GCACG---TTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Exonerate_protein2genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCA tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACCTGAAAATTGGCTCCTACACAGGCCCCCTGCGCACGTTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Exonerate_coding2genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCA tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACCTGAAAATTGGCTCCTACACAGGCCCCCTGCGCACGTTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from GeneWise tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagaaaactggaaaacctgaaaattggctcctacacaggccccctgcgcacgttgtctactcagggggtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAG-GAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagtTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGCGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCT-GGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAG-GAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagtTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGCGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCT-GGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAG-GAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGcGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTG-GGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAG-GAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGCGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCT-GGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAG-GAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGCGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCT-GGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAG-GAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG--GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGCGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGT---GTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAG-GAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGCGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGG-GTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGCGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATACGTCCCGGTACTGGCCAATGTGGGCCCACTGG-TCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from CESAR GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATACGTCCCGGTACTGGCCAATGTGGGCCCACTG-GTCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Spaln_aa2Genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATACGTCCCGGTACTGGCCAATGTGGGCCCACTGGTCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Spaln_nt2Genome GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATACGTCCCGGTACTGGCCAATGTGGGCCCACTGG-TCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Pairagon GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATACGTCCCGGTACTGGCCAATGTGGGCCCACTGG-TCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATACGTCCCGGTACTGGCCAATGTGGGCCCACTGGTCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Exonerate_coding2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATACGTCCCGGTACTGGCCAATGTGGGCCCACTGGTCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATACGTCCCGGTACTGGCCAATGTGGGCCCACTGGTCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag #### Nxf1_ID2343_3 --> 1 - 0 Original Alignment cAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCT-GCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA aggttcctcctacctagtgcgtatggaacagtgctctgctcccttcacagcAATCCTTATACCAACTGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGGGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTCGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATG-GACCACCAAGAACTGGTTCAAGATTACAgtatatacttagaaggataggtgattcaggaaacaggactagactcaatg Alignment from CESAR cAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCT-GCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA aggttcctcctacctagtgcgtatggaacagtgctctgctcccttcacagcAATCCTTATACCAACTGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGGGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTCGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATG-GACCACCAAGAACTGGTTCAAGATTACAgtatatacttagaaggataggtgattcaggaaacaggactagactcaatg Alignment from Spaln_aa2Genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA aggttcctcctacctagtgcgtatggaacagtgctctgctcccttcacagCAATCCTTATACCAACTGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGGGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTCGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGACCACCAAGAACTGGTTCAAGATTACAgtatatacttagaaggataggtgattcaggaaacaggactagactcaatg Alignment from Spaln_nt2Genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCT-GCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA aggttcctcctacctagtgcgtatggaacagtgctctgctcccttcacagCAATCCTTATACCAACTGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGGGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTCGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGAT-GGACCACCAAGAACTGGTTCAAGATTACAgtatatacttagaaggataggtgattcaggaaacaggactagactcaatg Alignment from Pairagon CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCT-GCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA aggttcctcctacctagtgcgtatggaacagtgctctgctcccttcacagCAATCCTTATACCAACTGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGGGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTCGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGAT-GGACCACCAAGAACTGGTTCAAGATTACAgtatatacttagaaggataggtgattcaggaaacaggactagactcaatg Alignment from Exonerate_protein2genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA aggttcctcctacctagtgcgtatggaacagtgctctgctcccttcacagCAATCCTTATACCAACTGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGGGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTCGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGACCACCAAGAACTGGTTCAAGATTACAgtatatacttagaaggataggtgattcaggaaacaggactagactcaatg Alignment from Exonerate_coding2genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGC---AGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA aggttcctcctacctagtgcgtatggaacagtgctctgctcccttcacagCAATCCTTATACCAACTGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGGGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCT--CGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGG-ACCACCAAGAACTGGTTCAAGATTACAgtatatacttagaaggataggtgattcaggaaacaggactagactcaatg Alignment from GeneWise CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA aggttcctcctacctagtgcgtatggaacagtgctctgctcccttcacagCAATCCTTATACCAACTGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGGGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTCGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGACCACCAAGAACTGGTTCAAGATTACAgtatatacttagaaggataggtgattcaggaaacaggactagactcaatg #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tggaaggacctgtggactacagattgaagtgtgtttccctttatcctcagTTTCACTATGAAAATACACGGCGCTCATTTTTTTGTGGAGGATGCCACTACTGGTT-CGCATTAAAGGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtggacaagggcctgtgatgacacagttggtgcactaaaagggact Alignment from CESAR TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tggaaggacctgtggactacagattgaagtgtgtttccctttatcctcagTTTCACTATGAAAATACACGGCGCTCATTTTTTTGTGGAGGATGCCACTACTGGTT-CGCATTAAAGGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtggacaagggcctgtgatgacacagttggtgcactaaaagggact Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tggaaggacctgtggactacagattgaagtgtgtttccctttatcctcagTTTCACTATGAAAATACACGGCGCTCATTTTTTTGTGGAGGATGCCACTACTGGTTCGCATTAAAGGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtggacaagggcctgtgatgacacagttggtgcactaaaagggact Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tggaaggacctgtggactacagattgaagtgtgtttccctttatcctcagTTTCACTATGAAAATACACGGCGCTCATTTTTTTGTGGAGGATGCCACTACTGGTTC-GCATTAAAGGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtggacaagggcctgtgatgacacagttggtgcactaaaagggact Alignment from Pairagon TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tggaaggacctgtggactacagattgaagtgtgtttccctttatcctcagTTTCACTATGAAAATACACGGCGCTCATTTTTTTGTGGAGGATGCCACTACTGGTTC-GCATTAAAGGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtggacaagggcctgtgatgacacagttggtgcactaaaagggact Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tggaaggacctgtggactacagattgaagtgtgtttccctttatcctcagTTTCACTATGAAAATACACGGCGCTCATTTTTTTGTGGAGGATGCCACTACTGGTTCGCATTAAAGGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtggacaagggcctgtgatgacacagttggtgcactaaaagggact Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tggaaggacctgtggactacagattgaagtgtgtttccctttatcctcagTTTCACTATGAAAATACACGGCGCTCATTTTTTTGTGGAGGATGCCACTACTGGTTCGCATTAAAGGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtggacaagggcctgtgatgacacagttggtgcactaaaagggact Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tggaaggacctgtggactacagattgaagtgtgtttccctttatcctcagTTTCACTATGAAAATACACGGCGCTCATTTTTTTGTGGAGGATGCCACTACTGGTTCGCATTAAAGGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtggacaagggcctgtgatgacacagttggtgcactaaaagggact #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTA-AACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagatTTGGTGGCTCAGAACATCGTTGTTGTTCTACAACCGCAGGAGCTGTATGGCAGCCACCCTGC-GATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTA-AACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagatTTGGTGGCTCAGAACATCGTTGTTGTTCTACAACCGCAGGAGCTGTATGGCAGCCACCCTGC-GATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTA-AACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAcAACCGCAGGAGCTGTATGGCAGCCACCCTGCG-ATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAA-ACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTACAACCGCAGGAGCTGTATGGCAGCCACCCTGC-GATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTA-AACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTACAACCGCAGGAGCTGTATGGCAGCCACCCTGC-GATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTACAACCGCAGGAGCTGTATGGCAGCCACCCTGCGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTACAACCGCAGGAGCTGTATGGCAGCCACCCTGCGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTACAACCGCAGGAGCTGTATGGCAGCCACCCTGCGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagtgGACGGGAAGTCTCGAGATCTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTC-TGCCAGCAATTCAgggtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from CESAR tgGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagtgGACGGGAAGTCTCGAGATCTCTTTACGTGCTTTCACAAGAACGTTCATTGCTG-TTCTGCCAGCAATTCAgggtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTT---CCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATcTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCTGCCAGCAATTCAGGGTGAgtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATCTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTC-TGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Pairagon TGGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATCTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTT-CTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Exonerate_protein2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATCTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Exonerate_coding2genome TGGATGGGAAGTCTCGAGATTC---TTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGAT--CTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCT-GCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from GeneWise TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATCTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATC-CTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagcTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCA-GACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAggtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATC-CTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagcTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCCTCCGTTTTTTTGTCAAGTCCCTTGCCA-GCAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAggtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCAT-CCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGC-AGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCAT-CCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGC-AGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Exonerate_coding2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGG-ATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca ccttccctttcccttctacttctcagacaaaccccccacccccgtctcaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCCATCCCCCAAGCTGCCCTTTCCAAACCAATCT-TATCCCTACAAATCTAGTGTCTCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGcagtaagatgtgaacacatttcattaccttggtatctcagacattgcaccac Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGG-ATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca ccttccctttcccttctacttctcagacaaaccccccacccccgtctcaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCCATCCCCCAAGCTGCCCTTTCCAAACCAATC-TTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGcagtaagatgtgaacacatttcattaccttggtatctcagacattgcaccac Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA ccttccctttcccttctacttctcagacaaaccccccacccccgtctcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCCATCCCCCAAGCTGCCCTTTCCAAACCAATCTTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAgtaagatgtgaacacatttcattaccttggtatctcagacattgcaccac Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGG-ATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA ccttccctttcccttctacttctcagacaaaccccccacccccgtctcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCCATCCCCCAAGCTGCCCTTTCCAAACCAATCT-TATCCCTACAAATCTAGTGTCTCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAgtaagatgtgaacacatttcattaccttggtatctcagacattgcaccac Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACG-GATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA ccttccctttcccttctacttctcagacaaaccccccacccccgtctcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCCATCCCCCAAGCTGCCCTTTCCAAACCAATCT-TATCCCTACAAATCTAGTGTCTCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAgtaagatgtgaacacatttcattaccttggtatctcagacattgcaccac Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA ccttccctttcccttctacttctcagacaaaccccccacccccgtctcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCCATCCCCCAAGCTGCCCTTTCCAAACCAATCTTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAgtaagatgtgaacacatttcattaccttggtatctcagacattgcaccac Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGG-ATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGC ccttccctttcccttctacttctcagacaaaccccccacccccgtctcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCCATCCCCCAAGCTGCCCTTTCCAAACCAATC-TTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGTaagatgtgaacacatttcattaccttggtatctcagacattgcaccac Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG ccttccctttcccttctacttctcagacaaaccccccacccccgtctcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCCATCCCCCAAGCTGCCCTTTCCAAACCAATCTTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGtaagatgtgaacacatttcattaccttggtatctcagacattgcaccac #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAG-GGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgggtgagacagcaccccagccgccgaggttattttggtctcttttctaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCCGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGCGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCA-TTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGCCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAGgtaagtagcctgtggaaaaaggcaaccccaggagctctcaggtcggttcg Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAG-GGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgggtgagacagcaccccagccgccgaggttattttggtctcttttctaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCCGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGCGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTC-ATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGCCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAGgtaagtagcctgtggaaaaaggcaaccccaggagctctcaggtcggttcg Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgggtgagacagcaccccagccgccgaggttattttggtctcttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCCGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGCGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGCCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAGgtaagtagcctgtggaaaaaggcaaccccaggagctctcaggtcggttcg Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAG-GGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgggtgagacagcaccccagccgccgaggttattttggtctcttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCCGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGCGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTC-ATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGCCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAGgtaagtagcctgtggaaaaaggcaaccccaggagctctcaggtcggttcg Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAG-GGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgggtgagacagcaccccagccgccgaggttattttggtctcttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCCGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGCGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTC-ATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGCCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAGgtaagtagcctgtggaaaaaggcaaccccaggagctctcaggtcggttcg Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAG-GGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTC--AATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgggtgagacagcaccccagccgccgaggttattttggtctcttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCCGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGCGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAT---TCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGCCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAGgtaagtagcctgtggaaaaaggcaaccccaggagctctcaggtcggttcg Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGG---TCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgggtgagacagcaccccagccgccgaggttattttggtctcttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCCGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAG--CGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCT-CATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGCCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAGgtaagtagcctgtggaaaaaggcaaccccaggagctctcaggtcggttcg Alignment from GeneWise CAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgggtgagacagcaccccagccgccgaggttattttggtctcttttctaggcagCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCCGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGCGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGCCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAGgtaagtagcctgtggaaaaaggcaaccccaggagctctcaggtcggttcg #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagaCTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTCGGTGGCCTGGCCTCCCTCAGCAATCATCCAC-CTTGGCACATCCTACGCCTGAAAATGCAGCAggtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagaCTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTCGGTGGCCTGGCCTCCCTCAGCAATCATCCAC-CTTGGCACATCCTACGCCTGAAAATGCAGCAggtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTCGGTGGCCTGGCCTCCCTCAGCAATCATCCACCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTCGGTGGCCTGGCCTCCCTCAGCAATCATCCA-CCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTCGGTGGCCTGGCCTCCCTCAGCAATCATCCA-CCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTCGGTGGCCTGGCCTCCCTCAGCAATCATCCACCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTCGGTGGCCTGGCCTCCCTCAGCAATCATCCACCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTCGGTGGCCTGGCCTCCCTCAGCAATCATCCACCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAG-AATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGCAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCT-CTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGaggtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAG-AATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGCAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCT-CTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGaggtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGCAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAG-AATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGCAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCT-CTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAG-AATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGCAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCT-CTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGCAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_coding2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGCAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGCAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCC-CTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG aatgccttccccaagacagtggtccctgccaccccaccaatgtcccctagGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCAGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCCGCCTGGCGGAGTGCCATCCTCAGCAACACCCCCTCCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTT-TGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcagatggtcttaatccgttctgcagcctatgctcctccttggtg Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCC-CTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG aatgccttccccaagacagtggtccctgccaccccaccaatgtcccctagGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCAGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCCGCCTGGCGGAGTGCCATCCTCAGCAACACCCCCTCCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCT-TTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcagatggtcttaatccgttctgcagcctatgctcctccttggtg Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG aatgccttccccaagacagtggtccctgccaccccaccaatgtcccctagGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCAGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCCGCCTGGCGGAGTGCCATCCTCAGCAACACCCCCTCCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcagatggtcttaatccgttctgcagcctatgctcctccttggtg Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACA-CCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG aatgccttccccaagacagtggtccctgccaccccaccaatgtcccctagGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCAGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCCGCCTGGCGGAGTGCCATCCTCAGCAACACCCCCTCCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTT-TGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcagatggtcttaatccgttctgcagcctatgctcctccttggtg Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCT-CCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG aatgccttccccaagacagtggtccctgccaccccaccaatgtcccctagGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCAGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCCGCCTGGCGGAGTGCCATCCTCAGCAACACCCCCTCCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTT-TGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcagatggtcttaatccgttctgcagcctatgctcctccttggtg Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG aatgccttccccaagacagtggtccctgccaccccaccaatgtcccctagGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCAGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCCGCCTGGCGGAGTGCCATCCTCAGCAACACCCCCTCCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcagatggtcttaatccgttctgcagcctatgctcctccttggtg Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTC---CCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG aatgccttccccaagacagtggtccctgccaccccaccaatgtcccctagGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCAGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCCGCCTGGCGGAGTGCCATCCTCAGCAACACCCCC--TCCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTT-GATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcagatggtcttaatccgttctgcagcctatgctcctccttggtg Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG aatgccttccccaagacagtggtccctgccaccccaccaatgtcccctagGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCAGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCCGCCTGGCGGAGTGCCATCCTCAGCAACACCCCCTCCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcagatggtcttaatccgttctgcagcctatgctcctccttggtg #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCAC-GCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagcCTAGAGCCCTTCCTCTACGGCCTGCATCGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTG-TGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGGTAGCCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCAC-GCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagcCTAGAGCCCTTCCTCTACGGCCTGCATCGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGT-GTGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGGTAGCCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCAC-GCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATcGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGT-GAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGGTAGCCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCA-CGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATCGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTG-TGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGGTAGCCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCA-CGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATCGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTG-TGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGGTAGCCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCAC-GCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGT--GACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATCGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGT---GAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGGTAGCCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGC---CCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCAT--CGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCG-TGTGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGGTAGCCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATCGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGTGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGGTAGCCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGC-TTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAG-GTCACACAGTATGTCTGCCaggtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGC-TTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACA-GGTCACACAGTATGTCTGCCaggtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGC-TTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCcTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGG-TCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTG-CTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAG-GTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTG-CTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAG-GTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTAT-GAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcaggtGCTGATGACAACAACCTCAACTTGATCTTTTATCGAGCACCTGACACGCTCACTGCAGCACATGCTGTGTGGGG-TCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGggtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTAT-GAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcaggtGCTGATGACAACAACCTCAACTTGATCTTTTATCGAGCACCTGACACGCTCACTGCAGCACATGCTGTGTGGG-GTCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGggtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATCGAGCACCTGACACGCTCACTGCAGCACATGCTGTGTGGGGTCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTAT-GAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATCGAGCACCTGACACGCTCACTGCAGCACATGCTGTGTGGGG-TCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTAT-GAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATCGAGCACCTGACACGCTCACTGCAGCACATGCTGTGTGGGG-TCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTAT-GAGCACTTGACACGCTCGCTGCAGCACACGCTGTGT--GGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATCGAGCACCTGACACGCTCACTGCAGCACATGCTGTGTGGGGT---CTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTAT-GAGCACTTGACACGCTCGCTGCAGCACACGCTGTGT--GGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATCGAGCACCTGACACGCTCACTGCAGCACATGCTGTGTGGGGT---CTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTG---ACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATCGAGCACCTGACACGCTCACTGCAGCACATGCTGTGTGGGGT---CTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTT-TCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTTCTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAG-CTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaagtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTT-TCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTTCTCTACCCCACTCAACCCCTTGCTGGGCAGTGCA-GCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaagtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTTCTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTT-TCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTTCTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAG-CTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTT-TCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTTCTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAG-CTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTTCTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTTCTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTTCTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTC-TTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagtaTTCACCTTATGCTTTCCGTTTGTACTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCT-CCTTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAggtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTC-TTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagtaTTCACCTTATGCTTTCCGTTTGTACTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACC-TCCTTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAggtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTACTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTCCTTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGT-CTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTACTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCT-CCTTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGT-CTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTACTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCT-CCTTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTACTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTCCTTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGT---CTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTT--GTACTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTC-CTTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTACTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTCCTTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATC-TGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCCTGGTTGCTGGATGCCCTCGGGACCGCTC-GCCCTTCCCACCTGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTggtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATC-TGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCCTGGTTGCTGGATGCCCTCGGGACCGCT-CGCCCTTCCCACCTGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTggtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCCTGGTTGCTGGATGCCCTCGGGACCGCTCGCCCTTCCCACCTGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCAT-CTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCCTGGTTGCTGGATGCCCTCGGGACCGCTC-GCCCTTCCCACCTGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCAT-CTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCCTGGTTGCTGGATGCCCTCGGGACCGCTC-GCCCTTCCCACCTGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCCTGGTTGCTGGATGCCCTCGGGACCGCTCGCCCTTCCCACCTGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCCTGGTTGCTGGATGCCCTCGGGACCGCTCGCCCTTCCCACCTGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCCTGGTTGCTGGATGCCCTCGGGACCGCTCGCCCTTCCCACCTGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct #### Pcnxl3_ID1184_9 --> 2 - 2 Original Alignment gtGTACGACGGTCGTATACCTTT-GGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcaggtGTACGACGGTCGTATACCTTTCGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGA-TCAGCCAGGCGAGCAGGCTGCCAATGGAGCCtggtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from CESAR gtGTACGACGGTCGTATACCTTT-GGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcaggtGTACGACGGTCGTATACCTTTCGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTG-ATCAGCCAGGCGAGCAGGCTGCCAATGGAGCCtggtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Spaln_aa2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTCGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGATCAGCCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Spaln_nt2Genome GTGTACGACGGTCGTATACC-TTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTCGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGA-TCAGCCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Pairagon GTGTACGACGGTCGTATACCTTT-GGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTCGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGA-TCAGCCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Exonerate_protein2genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTCGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGATCAGCCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Exonerate_coding2genome GTGTACGACGGTCGTATACCTTTGG---CCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTT--CGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAT-CAGCCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from GeneWise GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTCGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGATCAGCCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccaacccagcccagcttgtcacttattgaaggtcctctgtacccccagcaCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACCGACACAATGCAGGCAGCAACCCCACGCCTCCAG-CTCTGTCATGGGCTCACCACCTaggtgagcatctgtcccatggctgcagtatagaaggggcgactggctctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccaacccagcccagcttgtcacttattgaaggtcctctgtacccccagcaCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACCGACACAATGCAGGCAGCAACCCCACGCCTCCAG-CTCTGTCATGGGCTCACCACCTaggtgagcatctgtcccatggctgcagtatagaaggggcgactggctctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccagcccagcttgtcacttattgaaggtcctctgtacccccagCACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACCGACACAATGCAGGCAGCAACCCCACGCCTCCAGCTCTGTCATGGGCTCACCACCTAGgtgagcatctgtcccatggctgcagtatagaaggggcgactggctctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccagcccagcttgtcacttattgaaggtcctctgtacccccagCACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACCGACACAATGCAGGCAGCAACCCCACGCCTCCAGC-TCTGTCATGGGCTCACCACCTAGgtgagcatctgtcccatggctgcagtatagaaggggcgactggctctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccagcccagcttgtcacttattgaaggtcctctgtacccccagCACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACCGACACAATGCAGGCAGCAACCCCACGCCTCCAG-CTCTGTCATGGGCTCACCACCTAGgtgagcatctgtcccatggctgcagtatagaaggggcgactggctctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccagcccagcttgtcacttattgaaggtcctctgtacccccagCACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACCGACACAATGCAGGCAGCAACCCCACGCCTCCAGCTCTGTCATGGGCTCACCACCTAGgtgagcatctgtcccatggctgcagtatagaaggggcgactggctctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccagcccagcttgtcacttattgaaggtcctctgtacccccagCACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACCGACACAATGCAGGCAGCAACCCCACGCCTCCAGCTCTGTCATGGGCTCACCACCTAGgtgagcatctgtcccatggctgcagtatagaaggggcgactggctctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCC------------------------------------------------------TCTGTCATGGGCTCACCA gcccaacccagcccagcttgtcacttattgaaggtcctctgtacccccagCACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACCGACACAATGCAGGCAGCAACCCCACGCCTCCAGCTCTGTCATGGGCTCACCACCTAGGTGAGCATCTGTCCCATGGCTGCAGTATAGAAGGGGCGACTGGCTCTCCT #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATC-GTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagacATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTCGTGACCTCTGCCGACCGAGAAATGCTGA-GCTCAGCTCCAAAGAGAAACTGagtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATC-GTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagacATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTCGTGACCTCTGCCGACCGAGAAATGC-TGAGCTCAGCTCCAAAGAGAAACTGagtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTCGTGACCTCTGCCGACCGAGAAATGCTGAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGA-TCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTCGTGACCTCTGCCGACCGAGAAATGCTG-AGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGA-TCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTCGTGACCTCTGCCGACCGAGAAATGCTG-AGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTCGTGACCTCTGCCGACCGAGAAATGCTGAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTCGTGACCTCTGCCGACCGAGAAATGCTGAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTCGTGACCTCTGCCGACCGAGAAATGCTGAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTG-GTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcgagcagttttgtgagaagggattaaattgtgtttattttctcagGTCCCGCCCCCCAGCCTCATGGTGGCTGGAGTGTACTGCCTGCGTGGTAGCTGTCATCTTTGCTACCATCAAGACTG-GAACTATCGCCTGCATGCCATGTTTGACCAGGGCGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAaggtgagtgattccgggctgtgtcagggattgtcctttctctgtgcttggga Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTG-GTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcgagcagttttgtgagaagggattaaattgtgtttattttctcagGTCCCGCCCCCCAGCCTCATGGTGGCTGGAGTGTACTGCCTGCGTGGTAGCTGTCATCTTTGCTACCATCAAGACT-GGAACTATCGCCTGCATGCCATGTTTGACCAGGGCGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAaggtgagtgattccgggctgtgtcagggattgtcctttctctgtgcttggga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcgagcagttttgtgagaagggattaaattgtgtttattttctcagGTCCCGCCCCCCAGCCTCATGGTGGCTGGAGTGTACTGCCTGCGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGGAACTATCGCCTGCATGCCATGTTTGACCAGGGCGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGgtgagtgattccgggctgtgtcagggattgtcctttctctgtgcttggga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTG-GTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcgagcagttttgtgagaagggattaaattgtgtttattttctcagGTCCCGCCCCCCAGCCTCATGGTGGCTGGAGTGTACTGCCTGCGTGGTAGCTGTCATCTTTGCTACCATCAAGACTG-GAACTATCGCCTGCATGCCATGTTTGACCAGGGCGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGgtgagtgattccgggctgtgtcagggattgtcctttctctgtgcttggga Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTG-GTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcgagcagttttgtgagaagggattaaattgtgtttattttctcagGTCCCGCCCCCCAGCCTCATGGTGGCTGGAGTGTACTGCCTGCGTGGTAGCTGTCATCTTTGCTACCATCAAGACTG-GAACTATCGCCTGCATGCCATGTTTGACCAGGGCGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGgtgagtgattccgggctgtgtcagggattgtcctttctctgtgcttggga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcgagcagttttgtgagaagggattaaattgtgtttattttctcagGTCCCGCCCCCCAGCCTCATGGTGGCTGGAGTGTACTGCCTGCGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGGAACTATCGCCTGCATGCCATGTTTGACCAGGGCGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGgtgagtgattccgggctgtgtcagggattgtcctttctctgtgcttggga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGT---GGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcgagcagttttgtgagaagggattaaattgtgtttattttctcagGTCCCGCCCCCCAGCCTCATGGTGGCTGGAGTGTACTGCCTG--CGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGG-AACTATCGCCTGCATGCCATGTTTGACCAGGGCGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGgtgagtgattccgggctgtgtcagggattgtcctttctctgtgcttggga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcgagcagttttgtgagaagggattaaattgtgtttattttctcagGTCCCGCCCCCCAGCCTCATGGTGGCTGGAGTGTACTGCCTGCGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGGAACTATCGCCTGCATGCCATGTTTGACCAGGGCGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGgtgagtgattccgggctgtgtcagggattgtcctttctctgtgcttggga #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttaggtGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAG-GCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttaggtGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAG-GCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCT-GGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACA-GGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACA-GGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGG--CAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGCAG---ATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCT-GGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGG-CAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCA-AGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCACAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGG-GGAAGCCCGGGCCATTGCCATTGATGCAggtagaataaaagccctcccctggcaggaagagatagtctgaggattctgc Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCA-AGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCACAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAG-GGGAAGCCCGGGCCATTGCCATTGATGCAggtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCACAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgc Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCA-AGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCACAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGG-GGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgc Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCA-AGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCACAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGG-GGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgc Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCACAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgc Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCC-AAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCACAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGG-GAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgc Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCACAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgc #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGC-ACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcaggaagagatagtctgaggattctgtgtttttctccctctgtttcaggtGTTCCAGTGGTCCCTGGCCACAGACTCCCCCATCAGCTCCCTACACG-GGCACATGAGTTCTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCCGCCTATGGAGGTGGGGGCCGTGGCATGAGGGTTGTGCATAGCTATGAAgtaggtggggcagcacatataccaaagtctctgtgataggctggcagcca Alignment from CESAR gcGTTCCAGTGGTCCCCGGC-ACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcaggaagagatagtctgaggattctgtgtttttctccctctgtttcaggtGTTCCAGTGGTCCCTGGCCACAGACTCCCCCATCAGCTCCCTACAC-GGGCACATGAGTTCTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCCGCCTATGGAGGTGGGGGCCGTGGCATGAGGGTTGTGCATAGCTATGAAgtaggtggggcagcacatataccaaagtctctgtgataggctggcagcca Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcaggaagagatagtctgaggattctgtgtttttctccctctgtttcagGTGTTCCAGTGGTCCCTGGCCACAGACTCCCCCATCAGCTCCCTACACGGGCACATGAGTTCTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCCGCCTATGGAGGTGGGGGCCGTGGCATGAGGGTTGTGCATAGCTATGAAgtaggtggggcagcacatataccaaagtctctgtgataggctggcagcca Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGC-ACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcaggaagagatagtctgaggattctgtgtttttctccctctgtttcagGTGTTCCAGTGGTCCCTGGCCACAGACTCCCCCATCAGCTCCCTACACG-GGCACATGAGTTCTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCCGCCTATGGAGGTGGGGGCCGTGGCATGAGGGTTGTGCATAGCTATGAAgtaggtggggcagcacatataccaaagtctctgtgataggctggcagcca Alignment from Pairagon GCGTTCCAGTGGTCCCCGG-CACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcaggaagagatagtctgaggattctgtgtttttctccctctgtttcagGTGTTCCAGTGGTCCCTGGCCACAGACTCCCCCATCAGCTCCCTACACG-GGCACATGAGTTCTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCCGCCTATGGAGGTGGGGGCCGTGGCATGAGGGTTGTGCATAGCTATGAAgtaggtggggcagcacatataccaaagtctctgtgataggctggcagcca Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcaggaagagatagtctgaggattctgtgtttttctccctctgtttcagGTGTTCCAGTGGTCCCTGGCCACAGACTCCCCCATCAGCTCCCTACACGGGCACATGAGTTCTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCCGCCTATGGAGGTGGGGGCCGTGGCATGAGGGTTGTGCATAGCTATGAAgtaggtggggcagcacatataccaaagtctctgtgataggctggcagcca Alignment from Exonerate_coding2genome GCGTTCCAGTGGT-CCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcaggaagagatagtctgaggattctgtgtttttctccctctgtttcagGTGTTCCAGTGGTCCCTGGCCACAGACTCCCCCATCAGCTCCCTACACGG-GCACATGAGTTCTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCCGCCTATGGAGGTGGGGGCCGTGGCATGAGGGTTGTGCATAGCTATGAAgtaggtggggcagcacatataccaaagtctctgtgataggctggcagcca Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcaggaagagatagtctgaggattctgtgtttttctccctctgtttcagGTGTTCCAGTGGTCCCTGGCCACAGACTCCCCCATCAGCTCCCTACACGGGCACATGAGTTCTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCCGCCTATGGAGGTGGGGGCCGTGGCATGAGGGTTGTGCATAGCTATGAAgtaggtggggcagcacatataccaaagtctctgtgataggctggcagcca #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTAC-ACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACCACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGA-TGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAggtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from CESAR GAGTTGGAAGAGAATTAC-ACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACCACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTG-GGATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAggtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTAC-ACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACcACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAT-GGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTA-CACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACCACCCGGGCCTACTCCGAGGCCTTGGCAGCC-TTTGGGATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Pairagon GAGTTGGAAGAGAATTA-CACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACCACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGG-ATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACCACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACCACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACCACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACC-ACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg accctggactcctctgagcagccatgacactctgatgtgataccttgcaggaCATGTCATGGTGAATGGCCCTACCCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTGGATC-TGCTGTTCCTGCGGTGCCTATAggtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACC-ACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg accctggactcctctgagcagccatgacactctgatgtgataccttgcaggaCATGTCATGGTGAATGGCCCTACCCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTGG-ATCTGCTGTTCCTGCGGTGCCTATAggtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACC-ACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCcACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTGGATCT-GCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTAC-CACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTGGATC-TGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Pairagon GACATGTCATGGTGAATGGCCCTA-CCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTGGAT-CTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTGGATCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTGGATCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTGGATCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGC-ATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccaggcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCCATGGAGAACTGGGGAGGTGCCACATTCGATGTTG-GATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCaagtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGC-ATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccaggcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCCATGGAGAACTGGGGAGGTGCCACATTCGATGTT-GGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCaagtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAG-CATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCCATGGAGAACTGGGGAGGTGCCACATTCGATGTTG-GATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAG-CATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCCATGGAGAACTGGGGAGGTGCCACATTCGATGTTG-GATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGC-ATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGGA-TGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGG-GGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aggagttacaggaagtcaggaagaattcatatcagtctcccctattacaggTTCTGTGAGGTGGCCAAAGAGAATGATATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGCGGTGTGGTGGAGGCTGCCATCTCATACACGG-GGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAGgtaagggggccacacatcaggtccctcctcaccataattccgtgacctcg Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGG-GGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aggagttacaggaagtcaggaagaattcatatcagtctcccctattacaggTTCTGTGAGGTGGCCAAAGAGAATGATATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGCGGTGTGGTGGAGGCTGCCATCTCATACACGG-GGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAGgtaagggggccacacatcaggtccctcctcaccataattcgtcattgttt Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aggagttacaggaagtcaggaagaattcatatcagtctcccctattacagGTTCTGTGAGGTGGCCAAAGAGAATGATATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGCGGTGTGGTGGAGGCTGCCATCTCATACACGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAGgtaagggggccacacatcaggtccctcctcaccataattccgtgacctcg Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCT-GGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aggagttacaggaagtcaggaagaattcatatcagtctcccctattacagGTTCTGTGAGGTGGCCAAAGAGAATGATATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGCGGTGTGGTGGAGGCTGCCATCTCATACAC-GGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAGgtaagggggccacacatcaggtccctcctcaccataattccgtgacctcg Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGG-GGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aggagttacaggaagtcaggaagaattcatatcagtctcccctattacagGTTCTGTGAGGTGGCCAAAGAGAATGATATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGCGGTGTGGTGGAGGCTGCCATCTCATACAC-GGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAGgtaagggggccacacatcaggtccctcctcaccataattccgtgacctcg Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aggagttacaggaagtcaggaagaattcatatcagtctcccctattacagGTTCTGTGAGGTGGCCAAAGAGAATGATATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGCGGTGTGGTGGAGGCTGCCATCTCATACACGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAGgtaagggggccacacatcaggtccctcctcaccataattccgtgacctcg Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCT-GGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aggagttacaggaagtcaggaagaattcatatcagtctcccctattacagGTTCTGTGAGGTGGCCAAAGAGAATGATATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGCGGTGTGGTGGAGGCTGCCATCTCATACACG-GGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAGgtaagggggccacacatcaggtccctcctcaccataattccgtgacctcg Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aggagttacaggaagtcaggaagaattcatatcagtctcccctattacagGTTCTGTGAGGTGGCCAAAGAGAATGATATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGCGGTGTGGTGGAGGCTGCCATCTCATACACGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAGgtaagggggccacacatcaggtccctcctcaccataattccgtgacctcg #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTA-GACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTACGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGG-GGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAggtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTA-GACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTACGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGG-GGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAggtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGGCAGTA----GACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAcGACTCCATGTCAGGGATGACCTCACAGCCAAGCAT-GGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTA-GACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTACGACTCCATGTCAGGGATGACCTCACAGCCAAGCAT-GGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTA-GACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTACGACTCCATGTCAGGGATGACCTCACAGCCAAGCAT-GGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGGCAGTA----GACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGG--GCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTACGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGCC---TTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG----CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTACGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGG-GGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATG---GGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTACGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTAC-TGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagcgGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACCTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTG-TTGCATGGCCACCATGAAGTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTAC-TGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagcgGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACCTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTT-GTTGCATGGCCACCATGAAGTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACCTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGTTGCATGGCCACCATGAAGTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTA-CTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACCTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTG-TTGCATGGCCACCATGAAGTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTA-CTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACCTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTG-TTGCATGGCCACCATGAAGTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACCTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGTTGCATGGCCACCATGAAGTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACT-GGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACCTGGGAAGGGGCTCGGGGACTGTACGCAGCCT-TTGTTGCATGGCCACCATGAAGTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACCTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGTTGCATGGCCACCATGAAGTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAG-AATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAG-GCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAG-AATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAA-GGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAG-AATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGcAATGGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGG-CTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAG-AATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAG-GCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAG-AATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAG-GCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGC-AGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAG-GCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTG-TTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagtGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGCTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCG-AGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTG-TTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagtGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGCTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGC-GAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTG-TTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGcTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGAGGG-GCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTG-TTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGCTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGC-GAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTG-TTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGCTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGC-GAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGCTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGCTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGCTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGG-CTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG ggtcagggaacaacctgacatctgcaccaaaatgtttgtctcttcatcagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGG-GCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAGgtactgtgtgtccaagacactgcagctcttgcagaaactccgattaccaa Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGG-CTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG ggtcagggaacaacctgacatctgcaccaaaatgtttgtctcttcatcagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCCTGCATCTCTCTTCAGGCTTCCTTTGGGATG-TGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAGgtactgtgtgtccaagacactgcagctcttgcagaaactccgattaccaa Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGG-CTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG ggtcagggaacaacctgacatctgcaccaaaatgtttgtctcttcatcagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGcCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGCTT-GACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAGgtactgtgtgtccaagacactgcagctcttgcagaaactccgattaccaa Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTG-CCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG ggtcagggaacaacctgacatctgcaccaaaatgtttgtctcttcatcagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCCTGCATCTCTCTTCAGGCTTCCTTTGGGATGT-GGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAGgtactgtgtgtccaagacactgcagctcttgcagaaactccgattaccaa Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGG-CTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG ggtcagggaacaacctgacatctgcaccaaaatgtttgtctcttcatcagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCCTGCATCTCTCTTCAGGCTTCCTTTGGGATGT-GGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAGgtactgtgtgtccaagacactgcagctcttgcagaaactccgattaccaa Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGG-CTGCATCTCTCTTCAGGCTTCCTTTGGGAT--GTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG ggtcagggaacaacctgacatctgcaccaaaatgtttgtctcttcatcagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCCTGCATCTCTCTTCAGGCTTCCTTTGGGATGT---GGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAGgtactgtgtgtccaagacactgcagctcttgcagaaactccgattaccaa Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGG-CTGCATCTCTCTTCAGGCTTCCTTTGGGAT--GTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG ggtcagggaacaacctgacatctgcaccaaaatgtttgtctcttcatcagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCCTGCATCTCTCTTCAGGCTTCCTTTGGGATGT---GGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAGgtactgtgtgtccaagacactgcagctcttgcagaaactccgattaccaa Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG ggtcagggaacaacctgacatctgcaccaaaatgtttgtctcttcatcagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAGgtactgtgtgtccaagacactgcagctcttgcagaaactccgattaccaa #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGG-CTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctctcttcacttgaaggagcaggaactcgtgtgtgtgtgtttcttctcagAAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCAGATGACTTTGACCGGCTGGTGCTAAGCTCTCCTAACAGCTCCATCCTTTGGCCTGCAGTACATGGCTTTCCACCTGCAGGCAACAGAGATCG-AAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCaggtgagaacttggactttcccatgttgtcctgggtgagtgatctgttataa Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGG-CTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctctcttcacttgaaggagcaggaactcgtgtgtgtgtgtttcttctcagAAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCAGATGACTTTGACCGGCTGGTGCTAAGCTCTCCTAACAGCTCCATCCTTTGGCCTGCAGTACATGGCTTTCCACCTGCAGGCAACAGAGATCG-AAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCaggtgagaacttggactttcccatgttgtcctgggtgagtgatctgttataa Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGG-CTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctctcttcacttgaaggagcaggaactcgtgtgtgtgtgtttcttctcagAAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCAGATGACTTTGACCGGCTGGTGCTAAGCTCTCCTAACAGCTCCATCCTTTGGcCTGCAGTACATGGCTTTCCACCTGCAGGCAACAGAGATCGAAAG-GCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAGgtgagaacttggactttcccatgttgtcctgggtgagtgatctgttataa Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGG-CTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctctcttcacttgaaggagcaggaactcgtgtgtgtgtgtttcttctcagAAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCAGATGACTTTGACCGGCTGGTGCTAAGCTCTCCTAACAGCTCCATCCTTTGGCCTGCAGTACATGGCTTTCCACCTGCAGGCAACAGAGATCGA-AAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAGgtgagaacttggactttcccatgttgtcctgggtgagtgatctgttataa Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGG-CTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctctcttcacttgaaggagcaggaactcgtgtgtgtgtgtttcttctcagAAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCAGATGACTTTGACCGGCTGGTGCTAAGCTCTCCTAACAGCTCCATCCTTTGGCCTGCAGTACATGGCTTTCCACCTGCAGGCAACAGAGATCGA-AAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAGgtgagaacttggactttcccatgttgtcctgggtgagtgatctgttataa Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGG-CTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATC--GAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctctcttcacttgaaggagcaggaactcgtgtgtgtgtgtttcttctcagAAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCAGATGACTTTGACCGGCTGGTGCTAAGCTCTCCTAACAGCTCCATCCTTTGGCCTGCAGTACATGGCTTTCCACCTGCAGGCAACAGAGATCGA---AAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAGgtgagaacttggactttcccatgttgtcctgggtgagtgatctgttataa Alignment from Exonerate_coding2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGG-CTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATC--GAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctctcttcacttgaaggagcaggaactcgtgtgtgtgtgtttcttctcagAAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCAGATGACTTTGACCGGCTGGTGCTAAGCTCTCCTAACAGCTCCATCCTTTGGCCTGCAGTACATGGCTTTCCACCTGCAGGCAACAGAGATCGA---AAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAGgtgagaacttggactttcccatgttgtcctgggtgagtgatctgttataa Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctctcttcacttgaaggagcaggaactcgtgtgtgtgtgtttcttctcagAAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCAGATGACTTTGACCGGCTGGTGCTAAGCTCTCCTAACAGCTCCATCCTTTGGCCTGCAGTACATGGCTTTCCACCTGCAGGCAACAGAGATCGAAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAGgtgagaacttggactttcccatgttgtcctgggtgagtgatctgttataa #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGA-GCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcaggGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGGAGTCCCTGACAAAGGTCTTCGAGCAACGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATC-GGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGA-GCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcaggGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGGAGTCCCTGACAAAGGTCTTCGAGCAACGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCAT-CGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGGAGTCCCTGACAAAGGTCTTCGAGCAACGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGA-GCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGGAGTCCCTGACAAAGGTCTTCGAGCAACGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATC-GGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGA-GCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGGAGTCCCTGACAAAGGTCTTCGAGCAACGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATC-GGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGGAGTCCCTGACAAAGGTCTTCGAGCAACGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAG---CGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGGAGTCCCTGACAAAGGTCTTCGAGCAACGC--TGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCG-GCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGGAGTCCCTGACAAAGGTCTTCGAGCAACGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATAT-GGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATCGGTGCCTTTGTTTTGGGAAGGAGTCAGG-TGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAAcgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATAT-GGTGCCTTTGTTTTGGGGAGGAGTCAG-----GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATCGGTGCCTTTGTTTTGGGAAGGAGTCAGGTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAAcgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATAT-GGTGCCTTTGTTTTGGGGAGGAGTCAG-----GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATcGGTGCCTTTGTTTTGGGAAGGAGTCAGGTGggGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATAT-GGTGCCTTTGTTTTGGGGAGGAGTCAGG-----CTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATCGGTGCCTTTGTTTTGGGAAGGAGTCAGGTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATAT-GGTGCCTTTGTTTTGGGGAGGAGTCA-----GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATCGGTGCCTTTGTTTTGGGAAGGAGTCAGGTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATAT-GGTGCCTTTGTTTTGGGGAGGAGTCAG-----GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATCGGTGCCTTTGTTTTGGGAAGGAGTCAGGTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATAT-GGTGCCTTTGTTTTGGGGAGGAGTCAG-----GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATCGGTGCCTTTGTTTTGGGAAGGAGTCAGGTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATCGGTGCCTTTGTTTTGGGAAGGAGTCAGGTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATG-GTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGCGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGA-GATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from CESAR GCCATTGTAATG-GTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGCGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAG-AGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Spaln_aa2Genome GCCATTGTAATG-GTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGcGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGAG-ATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Spaln_nt2Genome GCCATTGTAATG-GTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGCGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGA-GATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Pairagon GCCATTGTAATG-GTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGCGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGA-GATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGCGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGAGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGCGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGAGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGCGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGAGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG accaaacgaagggttcacaaccataactctgtcctcttctcatttcacagGTCTTTTCTAAGTACCTCAGCTTTCGTTGCTGTCGCACTAAGGTTGAAGCACACCAGTT-CCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgagcgaacagttaacagtagtctccccttgctcatgtactctggcaga Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG accaaacgaagggttcacaaccataactctgtcctcttctcatttcacagGTCTTTTCTAAGTACCTCAGCTTTCGTTGCTGTCGCACTAAGGTTGAAGCACACCA-GTTCCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgagcgaacagttaacagtagtctccccttgctcatgtactctggcaga Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG accaaacgaagggttcacaaccataactctgtcctcttctcatttcacagGTCTTTTCTAAGTACCTCAGCTTTCGTTGCTGTCGCACTAAGGTTGAAGCACACCAGTTCCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgagcgaacagttaacagtagtctccccttgctcatgtactctggcaga Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG accaaacgaagggttcacaaccataactctgtcctcttctcatttcacagGTCTTTTCTAAGTACCTCAGCTTTCGTTGCTGTCGCACTAAGGTTGAAGCACACCAGTT-CCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgagcgaacagttaacagtagtctccccttgctcatgtactctggcaga Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG accaaacgaagggttcacaaccataactctgtcctcttctcatttcacagGTCTTTTCTAAGTACCTCAGCTTTCGTTGCTGTCGCACTAAGGTTGAAGCACACCAGTT-CCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgagcgaacagttaacagtagtctccccttgctcatgtactctggcaga Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG accaaacgaagggttcacaaccataactctgtcctcttctcatttcacagGTCTTTTCTAAGTACCTCAGCTTTCGTTGCTGTCGCACTAAGGTTGAAGCACACCAGTTCCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgagcgaacagttaacagtagtctccccttgctcatgtactctggcaga Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG accaaacgaagggttcacaaccataactctgtcctcttctcatttcacagGTCTTTTCTAAGTACCTCAGCTTTCGTTGCTGTCGCACTAAGGTTGAAGCACACCAGTTCCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgagcgaacagttaacagtagtctccccttgctcatgtactctggcaga Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG accaaacgaagggttcacaaccataactctgtcctcttctcatttcacagGTCTTTTCTAAGTACCTCAGCTTTCGTTGCTGTCGCACTAAGGTTGAAGCACACCAGTTCCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgagcgaacagttaacagtagtctccccttgctcatgtactctggcaga #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTC-TATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCCTACAAAATCACCGATTACATTTTACATGGCAAAGAAG-AATCAACGTGATTccgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from CESAR GAAATCATCTTC-TATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCCTACAAAATCACCGATTACATTTTACATGGCAAAGAAG-AATCAACGTGATTccgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Spaln_aa2Genome GAAATCATCTTC-TATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCcTACAAAATCACCGATTACATTTTACATGGCAAAGAAGA-ATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Spaln_nt2Genome GAAATCATCTTC-TATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCCTACAAAATCACCGATTACATTTTACATGGCAAAGAAGA-ATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Pairagon GAAATCATCTT-CTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCCTACAAAATCACCGATTACATTTTACATGGCAAAGAAGA-ATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Exonerate_protein2genome GAAATCATCTTC-TATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCCTACAAAATCACCGATTACATTTTACATGGCAAAGAAGAATCAACGTGATTCCGtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Exonerate_coding2genome GAAATCATCTTC-TATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCCTACAAAATCACCGATTACATTTTACATGGCAAAGAAGAATCAACGTGATTCCGtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from GeneWise ----------TTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCCTACAAAATCACCGATTACATTTTACATGGCAAAGAAGAA---------TCAACgtgattccgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGG-TACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGCTACCGTCCTGCCACCTACCACAACTGGCGGC-CGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGG-TACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGCTACCGTCCTGCCACCTACCACAACTGGCGG-CCGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGCTACCGTCCTGCCACCTACCACAACTGGCGGCCGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGG-TACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGCTACCGTCCTGCCACCTACCACAACTGGCGGC-CGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGG-TACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGCTACCGTCCTGCCACCTACCACAACTGGCGGC-CGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAA-GGGTACCGTCCTGTCACCTACCACAACTGGCGG--CACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGCTACCGTCCTGCCACCTACCACAACTGGCGGCC---GGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAA-GGGTACCGTCCTGTCACCTACCACAACTGGCGG--CACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGCTACCGTCCTGCCACCTACCACAACTGGCGGCC---GGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGCTACCGTCCTGCCACCTACCACAACTGGCGGCCGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTCGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTG-CTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTCGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTG-CTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTcGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGC-TACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTCGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTG-CTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTCGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTG-CTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCC---TACATCCG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTCGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Exonerate_coding2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCC---TACATCCG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTCGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTCGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTG-AATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagctCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGCAATGTCGCCTATGGCTCAGGAGAGATGTCCGGAT-TCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from CESAR ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTG-AATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagctCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGCAATGTCGCCTATGGCTCAGGAGAGATGTCCGGAT-TCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTG-AATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGcAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTCTTGCC-TATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTG-AATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGCAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATT-CTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Pairagon CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTG-AATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGCAATGTCGCCTATGGCTCAGGAGAGATGTCCGGA-TTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTG-AATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTT--CTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGCAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTCTT---GCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTG-AATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTT--CTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGCAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTCTT---GCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from GeneWise CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGCAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATA-GAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATACGAGACCTACTACTTGCCAGATGGGGGGCAGCAAC-TAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATA-GAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATACGAGACCTACTACTTGCCAGATGGGGGGCAGCAA-CTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATACGAGACCTACTACTTGCCAGATGGGGGGCAGCAACTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATA-GAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATACGAGACCTACTACTTGCCAGATGGGGGGCAGCAA-CTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATA-GAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATACGAGACCTACTACTTGCCAGATGGGGGGCAGCAA-CTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATACGAGACCTACTACTTGCCAGATGGGGGGCAGCAACTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATACGAGACCTACTACTTGCCAGATGGGGGGCAGCAACTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATACGAGACCTACTACTTGCCAGATGGGGGGCAGCAACTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTG-TAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACaggtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGT-GTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACaggtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTAcCGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGT-AGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTG-TAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTG-TAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Exonerate_coding2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA---CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACCGAGA--CCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGT-AGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCC-ACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCCACGGTCACACTGCCCCACCTCTTCCACGCCA-CTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTC-CCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCCACGGTCACACTGCCCCACCTCTTCCACGCCA-CTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCCACGGTCACACTGCCCCACCTCTTCCACGCCACTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCC-CACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCCACGGTCACACTGCCCCACCTCTTCCACGCCA-CTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTT-CCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCCACGGTCACACTGCCCCACCTCTTCCACGCCA-CTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCCACGGTCACACTGCCCCACCTCTTCCACGCCACTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCCACGGTCACACTGCCCCACCTCTTCCACGCCACTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCCACGGTCACACTGCCCCACCTCTTCCACGCCACTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTC-ACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTG-CTACCCTGTGCGCATGGTGGTCaggtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from CESAR GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTC-ACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGT-GCTACCCTGTGCGCATGGTGGTCaggtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Spaln_aa2Genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTC-ACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCcACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGC-TACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Spaln_nt2Genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCT-CACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTG-CTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Pairagon GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCT-CACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTG-CTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Exonerate_protein2genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGCTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Exonerate_coding2genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCT---CACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGT--CTCCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGC-TACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from GeneWise GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGCTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTC-TCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACTGGGGCTCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTG-GCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTC-TCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACTGGGGCTCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGT-GGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACTGGGGCTCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCT-CTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACTGGGGCTCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTG-GCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCT-CTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACTGGGGCTCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTG-GCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Exonerate_protein2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACTGGGGCTCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Exonerate_coding2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTC-TCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACTGGGGCTCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGT-GGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACTGGGGCTCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga #### Pkd2l1_ID8954_14 --> 1 - 0 Original Alignment gCTCACAAGGAGAGTTCTGCAG-CTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcaggCTCACAAGGAGAGTTTTGCAGCCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTG-TGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from CESAR gCTCACAAGGAGAGTTCTGCAG-CTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcaggCTCACAAGGAGAGTTTTGCAGCCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATT-GTGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Spaln_aa2Genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGTGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Spaln_nt2Genome GCTCACAAGGAGAGTTCTGCAGC-TGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTG-TGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Pairagon GCTCACAAGGAGAGTTCTGCAG-CTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTG-TGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Exonerate_protein2genome GCTCACAAGGAGAGTTCTGCAG-CTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATT--GATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGT---GCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Exonerate_coding2genome GCTCACAAGGAGAGTTCTGCAGCT-GCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGAT-TGTGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from GeneWise GCTCACAAGGAGAGTTCTGCAG---CTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGT---GCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTT-GGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTCGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTA-CACTTTCGTCAAGTGCatgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTT-GGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTCGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTT-ACACTTTCGTCAAGTGCatgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTT-GGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTcGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAC-ACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTT-GGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTCGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTA-CACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTT-GGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTCGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTA-CACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTT-GGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTT--AGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTCGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAC---ACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Exonerate_coding2genome ATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagatATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTCGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTACACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTCGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTACACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt gtgaccatcgtccaacctctgagtctcccttcataactactttttcttaggGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGA-GGAAGTGTATGGCCACTGGgtgtgagaccactgagtgaggggacgcagggacagagcttagccctgaatct Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gtgaccatcgtccaacctctgagtctcccttcataactactttttcttaggGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGA-GGAAgtgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgacttg Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGA gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCcAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAGGAAgtgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgaatct Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCG-CAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAG-AGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgaatct Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCG-CAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAG-AGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgaatct Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGA gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAGGAAgtgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgaatct Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGC-AACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAG-AGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgaatct Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAG-CGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGA gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAGGAAgtgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgaatct #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTC-AAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCCAAGGAGGTTGTCCTGGATACACACACAACCC-GTTCAAGAGGCTAAAGGAGTTGAATGAAaggtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from CESAR GCTCATCAGCGGCTC-AAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCCAAGGAGGTTGTCCTGGATACACACACAACC-CGTTCAAGAGGCTAAAGGAGTTGAATGAAaggtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Spaln_aa2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCCAAGGAGGTTGTCCTGGATACACACACAACCCGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Spaln_nt2Genome GCTCATCAGCGGCTC-AAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCCAAGGAGGTTGTCCTGGATACACACACAAC-CCGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Pairagon GCTCATCAGCGGCT-CAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCCAAGGAGGTTGTCCTGGATACACACACAAC-CCGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCCAAGGAGGTTGTCCTGGATACACACACAACCCGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Exonerate_coding2genome GCTCATCAGCGGCTC-AAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCCAAGGAGGTTGTCCTGGATACACACACAACCCGT-TCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from GeneWise GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCCAAGGAGGTTGTCCTGGATACACACACAACCCGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTAT-CGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCCGAGAGTTCCAGAACCAAAAAGTACAGAGCC-GTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTAT-CGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCCGAGAGTTCCAGAACCAAAAAGTACAGAGC-CGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCCGAGAGTTCCAGAACCAAAAAGTACAGAGCCGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTAT-CGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCCGAGAGTTCCAGAACCAAAAAGTACAGAGCC-GTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTAT-CGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCCGAGAGTTCCAGAACCAAAAAGTACAGAGCC-GTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCCGAGAGTTCCAGAACCAAAAAGTACAGAGCCGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTAT-CGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCCGAGAGTTCCAGAACCAAAAAGTACAGAGCCGT-TGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCCGAGAGTTCCAGAACCAAAAAGTACAGAGCCGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGG-AGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagagGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGCAGCCGGCAGGATCAAGACCTGCGGGAGTTGC-TAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGG-AGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagagGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGCAGCCGGCAGGATCAAGACCTGCGGGAGTTG-CTAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGCAGCCGGCAGGATCAAGACCTGCGGGAGTTGCTAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGG-AGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGCAGCCGGCAGGATCAAGACCTGCGGGAGTTGC-TAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGG-AGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGCAGCCGGCAGGATCAAGACCTGCGGGAGTTGC-TAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGCAGCCGGCAGGATCAAGACCTGCGGGAGTTGCTAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGG-AGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGCAGCCGGCAGGATCAAGACCTGCGGGAGTTG-CTAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from GeneWise GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagCTACAGCTAACCTGGCATGGGTCTCCCCTCACTCAGAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGCAGCCGGCAGGATCAAGACCTGCGGGAGTTGCTAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACC-CGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCCGGACATCTCAGGGAAACTCATTCAACCCTGTGT-GGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACC-CGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCCGGACATCTCAGGGAAACTCATTCAACCCTGTGT-GGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACC-CGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCCGGACATCTCAGGGAAACTCATTCAACCCTGTGT-GGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTA-CCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCCGGACATCTCAGGGAAACTCATTCAACCCTGTGT-GGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGG-TACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagatTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGCTACTTGCTCAAGCCCGAGTTTATGCGGCGGC-GGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGG-TACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagatTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGCTACTTGCTCAAGCCCGAGTTTATGCGGCGG-CGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGCTACTTGCTCAAGCCCGAGTTTATGCGGCGGCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGC-GGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGCTACTTGCTCAAGCCCGAGTTTATGCGGCGG-CGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGG-TACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGCTACTTGCTCAAGCCCGAGTTTATGCGGCGG-CGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGCTACTTGCTCAAGCCCGAGTTTATGCGGCGGCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGCTACTTGCTCAAGCCCGAGTTTATGCGGCGGCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGCTACTTGCTCAAGCCCGAGTTTATGCGGCGGCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTC-TCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgccgcccgtccccccattgaccctattaatttttcttccctctagcATTCTGAAGATGTTCCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCT-TGGCCTCAACTTCAACCGAgtgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from CESAR cATTCTGAAGATGTTC-TCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgccgcccgtccccccattgaccctattaatttttcttccctctagcATTCTGAAGATGTTCCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCC-TTGGCCTCAACTTCAACCGAgtgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Spaln_aa2Genome CATTCTGAAGATGTTC-TCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCcTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTT-GGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Spaln_nt2Genome CATTCTGAAGATGTT-CTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCT-TGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Pairagon CATTCTGAAGATGTT-CTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCT-TGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Exonerate_coding2genome CATTCTGAAGATGTTCTC---GGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTC--CTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTT-GGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTG-GCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccctctgcccccttctcccattctcaggccctcttgtctctctgcagGTCTGGTCAGAGGAGTTGTTTAAACTGCGCCATGAACATATTGGCCCAGAACGCCTCCCAGA-CACCTTCCTGCGGAAAgcgtaagactgcggttaccctagggagtgctgggagttccactgacaagacc Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTG-GCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccctctgcccccttctcccattctcaggccctcttgtctctctgcagGTCTGGTCAGAGGAGTTGTTTAAACTGCGCCATGAACATATTGGCCCAGAACGCCTCCC-AGACACCTTCCTGCGGAAAgcgtaagactgcggttaccctagggagtgctgggagttccactgacaagacc Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTG-GCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccattctcaggccctcttgtctctctgcagGTCTGGTCAGAGGAGTTGTTTAAACTGcGCCATGAACATATTGGCCCAGAACGCCTCCCA-GACACCTTCCTGCGGAAAGCgtaagactgcggttaccctagggagtgctgggagttccactgacaagacc Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTG-GCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccattctcaggccctcttgtctctctgcagGTCTGGTCAGAGGAGTTGTTTAAACTGCGCCATGAACATATTGGCCCAGAACGCCTCCCAGA-CACCTTCCTGCGGAAAGCgtaagactgcggttaccctagggagtgctgggagttccactgacaagacc Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTG-GCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccattctcaggccctcttgtctctctgcagGTCTGGTCAGAGGAGTTGTTTAAACTGCGCCATGAACATATTGGCCCAGAACGCCTCCCAG-ACACCTTCCTGCGGAAAGCgtaagactgcggttaccctagggagtgctgggagttccactgacaagacc Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccattctcaggccctcttgtctctctgcagGTCTGGTCAGAGGAGTTGTTTAAACTGCGCCATGAACATATTGGCCCAGAACGCCTCCCAGACACCTTCCTGCGGAAAGCgtaagactgcggttaccctagggagtgctgggagttccactgacaagacc Alignment from Exonerate_coding2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccattctcaggccctcttgtctctctgcagGTCTGGTCAGAGGAGTTGTTTAAACTGCGCCATGAACATATTGGCCCAGAACGCCTCCCAGACACCTTCCTGCGGAAAGCgtaagactgcggttaccctagggagtgctgggagttccactgacaagacc Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccattctcaggccctcttgtctctctgcagGTCTGGTCAGAGGAGTTGTTTAAACTGCGCCATGAACATATTGGCCCAGAACGCCTCCCAGACACCTTCCTGCGGAAAGCgtaagactgcggttaccctagggagtgctgggagttccactgacaagacc #### Plekhs1_ID12098_3 --> 0 - 2 Original Alignment ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCC-CAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAAG-CCATCAGCACAGAGGTTCCATTGAAATTGACgggtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from CESAR ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCC-CAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAA-GCCATCAGCACAGAGGTTCCATTGAAATTGACgggtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Spaln_aa2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCC-CAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCcCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAAGC-CATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Spaln_nt2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGT-CCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAAG-CCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Pairagon ACCTCCTGGAAAAAGCGTCTTTTTATTCTGT-CCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAAG-CCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Exonerate_protein2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAAGCCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Exonerate_coding2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAAGCCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from GeneWise ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAAGCCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat #### Pnlip_ID12748_7 --> 2 - 1 Original Alignment gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATC-GAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gtgccggggtcgcatagtaatagagacttacatttatttctttttgataggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGTATTCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTG-TGACATCGACGGGATCTGGGAAggtgagtattgtgcccatgaatttccaccgtgaattctccctttttttttt Alignment from CESAR gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATC-GAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gtgccggggtcgcatagtaatagagacttacatttatttctttttgataggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGTATTCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTG-TGACATCGACGGGATCTGGGAAggtgagtattgtgcccatgaatttccaccgtgaattctccctttttttttt Alignment from Spaln_aa2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATC-GAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtgccggggtcgcatagtaatagagacttacatttatttctttttgatagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGTATTcGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGT-GACATCGACGGGATCTGGGAAGgtgagtattgtgcccatgaatttccaccgtgaattctccctttttttttt Alignment from Spaln_nt2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAAT-CGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtgccggggtcgcatagtaatagagacttacatttatttctttttgatagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGTATTCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGT-GACATCGACGGGATCTGGGAAGgtgagtattgtgcccatgaatttccaccgtgaattctccctttttttttt Alignment from Pairagon GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGG-AATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtgccggggtcgcatagtaatagagacttacatttatttctttttgatagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGTATTCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTG-TGACATCGACGGGATCTGGGAAGgtgagtattgtgcccatgaatttccaccgtgaattctccctttttttttt Alignment from Exonerate_protein2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATC-GAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATT--GTTGACATCGACGGGATCTGGGAAG gtgccggggtcgcatagtaatagagacttacatttatttctttttgatagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGTATTCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGT---GACATCGACGGGATCTGGGAAGgtgagtattgtgcccatgaatttccaccgtgaattctccctttttttttt Alignment from Exonerate_coding2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAAT---CGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtgccggggtcgcatagtaatagagacttacatttatttctttttgatagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGT--ATTCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGT-GACATCGACGGGATCTGGGAAGgtgagtattgtgcccatgaatttccaccgtgaattctccctttttttttt Alignment from GeneWise GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGA-ATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gtgccggggtcgcatagtaatagagacttacatttatttctttttgatagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGTATTCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGT-GACATCGACGGGATCTGGGAAGgtgagtattgtgcccatgaatttccaccgtgaattctccctttttttttt #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGGCTGCAGCGC-TGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcaggtATCACAAGGCTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAG-GGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from CESAR gtATCACAAGGCTGCAGCGC-TGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcaggtATCACAAGGCTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTA-GGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCG-CTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAG-GGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Pairagon GTATCACAAGGCTGCAGCG-CTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAG-GGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCT-GCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTCGCTCCTGGCACCCAGCGGGATTTACCCA-AACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCT-GCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTCGCTCCTGGCACCCAGCGGGATTTACCCA-AACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTCGCTCCTGGCACCCAGCGGGATTTACCCAAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCT-GCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTCGCTCCTGGCACCCAGCGGGATTTACCCA-AACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCT-GCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTCGCTCCTGGCACCCAGCGGGATTTACCCA-AACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTCGCTCCTGGCACCCAGCGGGATTTACCCAAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTCGCTCCTGGCACCCAGCGGGATTTACCCAAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTCGCTCCTGGCACCCAGCGGGATTTACCCAAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTC-AAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagtgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGG-ACTTGAGGCACCCCTCAAGATCTGTggtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTC-AAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagtgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGG-ACTTGAGGCACCCCTCAAGATCTGTggtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGACTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCT-CAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGA-CTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCT-CAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGA-CTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTC-AAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTG--GAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGA---CTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCT-CAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGA-CTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGACTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTC-TTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagggGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGA-CATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTC-TTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagggGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGA-CATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCT-CTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGA-CATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCT-CTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGA-CATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCT-CCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAA-GGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCC-CAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAA-GGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCC-CAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCcCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAG-GAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGG-AGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGG-AAGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAA agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAA agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg #### Ppp1r32_ID2849_2 --> 2 - 2 Original Alignment gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAA-TCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gccactcgtcacttttctggtgggctttacatcattttatatctttaaaggtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAACTCCAACTATCGGCCTCTGGTCTCCTACCAACCAC-CCTGGATACCCTGGACAATCCTGCCATAgggtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from CESAR gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAA-TCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gccactcgtcacttttctggtgggctttacatcattttatatctttaaaggtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAACTCCAACTATCGGCCTCTGGTCTCCTACCAACCA-CCCTGGATACCCTGGACAATCCTGCCATAgggtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Spaln_aa2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAACTCCAACTATCGGCCTCTGGTCTCCTACCAACCACCCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Spaln_nt2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAA-TCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAACTCCAACTATCGGCCTCTGGTCTCCTACCAACCAC-CCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Pairagon GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAA-TCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAACTCCAACTATCGGCCTCTGGTCTCCTACCAACCAC-CCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Exonerate_protein2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAA-TCCAACTATCGGCCCCTGGTCTCCTACCAACCG--CACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAACTCCAACTATCGGCCTCTGGTCTCCTACCAACCACC---CTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Exonerate_coding2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAA-TCCAACTATCGGCCCCTGGTCTCCTACCAACCG--CACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAACTCCAACTATCGGCCTCTGGTCTCCTACCAACCACC---CTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from GeneWise GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAACTCCAACTATCGGCCTCTGGTCTCCTACCAACCACCCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCT-CTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTC-GAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCT-CTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGT-CGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCT-GAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTC-GAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCT-GAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTC-GAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCT-GAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCG-AGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCC-AAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagttGCTCACCCAATCCGACCCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCA-TCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from CESAR ttGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagttGCTCACCCAATCCGACCCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCA-TCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCAT-CTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Pairagon TTGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCA-TCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg caaattctctggctctcccccagtcctctgcttcgtttctctttcaacagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCC-GGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaacgtgtattgccttgtaatgtcccttttaggcattatttttaaaatc Alignment from CESAR GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg caaattctctggctctcccccagtcctctgcttcgtttctctttcaacagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGC-CGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaacgtgtattgccttgtaatgtcccttttctgctcttgctcttcccct Alignment from Spaln_aa2Genome GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG caaattctctggctctcccccagtcctctgcttcgtttctctttcaacagGATGCAGTCATGCTGCACcAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCG-GAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaacgtgtattgccttgtaatgtcccttttaggcattatttttaaaatc Alignment from Spaln_nt2Genome GATGCAGTCATGCTGCA-CAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG caaattctctggctctcccccagtcctctgcttcgtttctctttcaacagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCC-GGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaacgtgtattgccttgtaatgtcccttttaggcattatttttaaaatc Alignment from Pairagon GATGCAGTCATGCTGCA-CAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG caaattctctggctctcccccagtcctctgcttcgtttctctttcaacagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCC-GGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaacgtgtattgccttgtaatgtcccttttaggcattatttttaaaatc Alignment from Exonerate_protein2genome GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG caaattctctggctctcccccagtcctctgcttcgtttctctttcaacagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaacgtgtattgccttgtaatgtcccttttaggcattatttttaaaatc Alignment from Exonerate_coding2genome GATGCAGTCATGCTGCACA-GCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG caaattctctggctctcccccagtcctctgcttcgtttctctttcaacagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCC-GGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaacgtgtattgccttgtaatgtcccttttaggcattatttttaaaatc Alignment from GeneWise GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG caaattctctggctctcccccagtcctctgcttcgtttctctttcaacagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaacgtgtattgccttgtaatgtcccttttaggcattatttttaaaatc #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aggtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagctCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGG-TGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from CESAR ctCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG acgtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagctCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGG-TGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aggtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Spaln_nt2Genome CTCTGGCTACTCTG-AAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aggtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGG-TGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Pairagon CTCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aggtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGG-TGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aggtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACC-ACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aggtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGT-GTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from GeneWise CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aggtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactacactacaagcttccccttcctggctgcagctCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGA-CAAGATCTGGGACCTAAAGgtaagtggacatgtaggtcccatctggggccaacaggagggactagtgag Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactacactacaagcttccccttcctggctgcagctCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAG-ACAAGATCTGGGACCTAAAGgtaagtggacatgtaggtcccatctggggccaacaggagggactagtgag Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactacactacaagcttccccttcctggctgcagCTCTTACCTGTGCACAGTTCCACCCTcGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAC-AAGATCTGGGACCTAAAGgtaagtggacatgtaggtcccatctggggccaacaggagggactagtgag Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCA-CCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactacactacaagcttccccttcctggctgcagCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGA-CAAGATCTGGGACCTAAAGgtaagtggacatgtaggtcccatctggggccaacaggagggactagtgag Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactacactacaagcttccccttcctggctgcagCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGA-CAAGATCTGGGACCTAAAGgtaagtggacatgtaggtcccatctggggccaacaggagggactagtgag Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAG--ATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactacactacaagcttccccttcctggctgcagCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAC---AAGATCTGGGACCTAAAGgtaagtggacatgtaggtcccatctggggccaacaggagggactagtgag Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCA-CCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactacactacaagcttccccttcctggctgcagCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAC-AAGATCTGGGACCTAAAGgtaagtggacatgtaggtcccatctggggccaacaggagggactagtgag Alignment from GeneWise ----------------------CTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactacactacaagCTTCCCCTTCCTGGCTGCAGCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAC-AAGATCTGGGACCTAAAGgtaagtggacatgtaggtcccatctggggccaacaggagggactagtgag #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGCGCGAACTTCCCTGGCCATTCTGGCCCTATTACCA-CATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from CESAR GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGCGCGAACTTCCCTGGCCATTCTGGCCCTATTACC-ACATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Spaln_aa2Genome GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGcGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAC-ATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Spaln_nt2Genome GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGCGCGAACTTCCCTGGCCATTCTGGCCCTATTACCA-CATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Pairagon GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGCGCGAACTTCCCTGGCCATTCTGGCCCTATTACCA-CATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGCGCGAACTTCCCTGGCCATTCTGGCCCTATTACCACATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGC-CAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGCGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAC-ATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGCGCGAACTTCCCTGGCCATTCTGGCCCTATTACCACATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc #### Pygm_ID1679_3 --> 0 - 1 Original Alignment CTGGGCTTGGACATGGAGGAG-TTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGCTTGGAGGAGATCGAGGAGGATGCAGGGT-GGGCAATGGGGGCCTGGGACGCCTTGCAggtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from CESAR CTGGGCTTGGACATGGAGGAG-TTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGCTTGGAGGAGATCGAGGAGGATGCAG-GGTGGGCAATGGGGGCCTGGGACGCCTTGCAggtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Spaln_aa2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGCTTGGAGGAGATCGAGGAGGATGCAGGGTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Spaln_nt2Genome CTGGGCTTGGACATGGAGGAG-TTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGCTTGGAGGAGATCGAGGAGGATGCAGGGT-GGGCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Pairagon CTGGGCTTGGACATGGAGGAG-TTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGCTTGGAGGAGATCGAGGAGGATGCAGGG-TGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Exonerate_protein2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGCTTGGAGGAGATCGAGGAGGATGCAGGGTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Exonerate_coding2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGCTTGGAGGAGATCGAGGAGGATGCAGGGTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from GeneWise CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGCTTGGAGGAGATCGAGGAGGATGCAGGGTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAG-GCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagtcAATGTTGGTGGCTACATCCAGCGCTGTGCTGGACCGAAACCTGGCCGAGAACA-CTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from CESAR tcAATGTTGGCGGCTACATCCAG-GCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagtcAATGTTGGTGGCTACATCCAGCGCTGTGCTGGACCGAAACCTGGCCGAGAAC-ACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGCGCTGTGCTGGACCGAAACCTGGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAG-GCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGCGCTGTGCTGGACCGAAACCTGGCCGAGAACA-CTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Pairagon TCAATGTTGGCGGCTACATCCAG-GCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGCGCTGTGCTGGACCGAAACCTGGCCGAGAACA-CTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGCGCTGTGCTGGACCGAAACCTGGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGCGCTGTGCTGGACCGAAACCTGGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGCGCTGTGCTGGACCGAAACCTGGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAG-TACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGCTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTT-CAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAG-TACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGCTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGAC-GTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAG-TACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGcTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACG-TTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAG-TACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGCTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACG-TTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAG-TACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGCTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACG-TTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAG-TACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA--CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGCTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACG---TTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTA---CTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAG--CTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACG-TTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGCTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCA-GTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaaggtgtgtggaggtcaactgacataccagctcactctgttttacagGCCTGGGATGTAACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCACGTGCACCTCATGGAGACACTGCTGCCCCGTCACT-GCAGATAATTTACGAGATCAACCAGCGTTTCCTTAACgtgaggtggggacaatgtgggagaggagccccagccttgaagtgaggaag Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCA-GTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaaggtgtgtggaggtcaactgacataccagctcactctgttttacagGCCTGGGATGTAACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCACGTGCACCTCATGGAGACACTGCTGCCCCGTC-ACTGCAGATAATTTACGAGATCAACCAGCGTTTCCTTAACgtgaggtggggacaatgtgggagaggagccccagccttgaagtgaggaag Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaaggtgtgtggaggtcaactgacataccagctcactctgttttacagGCCTGGGATGTAACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCACGTGCACCTCATGGAGACACTGCTGCCCCGTCACTGCAGATAATTTACGAGATCAACCAGCGTTTCCTTAACgtgaggtggggacaatgtgggagaggagccccagccttgaagtgaggaag Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCA-GTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaaggtgtgtggaggtcaactgacataccagctcactctgttttacagGCCTGGGATGTAACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCACGTGCACCTCATGGAGACACTGCTGCCCCGTCAC-TGCAGATAATTTACGAGATCAACCAGCGTTTCCTTAACgtgaggtggggacaatgtgggagaggagccccagccttgaagtgaggaag Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCA-GTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaaggtgtgtggaggtcaactgacataccagctcactctgttttacagGCCTGGGATGTAACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCACGTGCACCTCATGGAGACACTGCTGCCCCGTCAC-TGCAGATAATTTACGAGATCAACCAGCGTTTCCTTAACgtgaggtggggacaatgtgggagaggagccccagccttgaagtgaggaag Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaaggtgtgtggaggtcaactgacataccagctcactctgttttacagGCCTGGGATGTAACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCACGTGCACCTCATGGAGACACTGCTGCCCCGTCACTGCAGATAATTTACGAGATCAACCAGCGTTTCCTTAACgtgaggtggggacaatgtgggagaggagccccagccttgaagtgaggaag Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaaggtgtgtggaggtcaactgacataccagctcactctgttttacagGCCTGGGATGTAACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCACGTGCACCTCATGGAGACACTGCTGCCCCGTCACTGCAGATAATTTACGAGATCAACCAGCGTTTCCTTAACgtgaggtggggacaatgtgggagaggagccccagccttgaagtgaggaag Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaaggtgtgtggaggtcaactgacataccagctcactctgttttacagGCCTGGGATGTAACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCACGTGCACCTCATGGAGACACTGCTGCCCCGTCACTGCAGATAATTTACGAGATCAACCAGCGTTTCCTTAACgtgaggtggggacaatgtgggagaggagccccagccttgaagtgaggaag #### Pygm_ID1687_11 --> 0 - 2 Original Alignment CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATG-TCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat gagaactggagactactaattctgggtcttgctaacattcttctctgcagCGGGTGGCAGCTGCATTCCCTGGGGATGTAGATAGGCTGCGGCGCATGCTCACTCGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTC-CCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCatgtgagcgctctccaccagcaccgaaataccacacttccggtatgggccct Alignment from CESAR CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATG-TCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat gagaactggagactactaattctgggtcttgctaacattcttctctgcagCGGGTGGCAGCTGCATTCCCTGGGGATGTAGATAGGCTGCGGCGCATGCTCACTCGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCT-CCCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCatgtgagcgctctccaccagcaccgaaataccacacttccggtatgggccct Alignment from Spaln_aa2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATG-TCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gagaactggagactactaattctgggtcttgctaacattcttctctgcagCGGGTGGCAGCTGCATTCCCTGGGGATGTAGATAGGCTGCGGCGCATGcTCACTCGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCC-CTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgagcgctctccaccagcaccgaaataccacacttccggtatgggccct Alignment from Spaln_nt2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATG-TCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gagaactggagactactaattctgggtcttgctaacattcttctctgcagCGGGTGGCAGCTGCATTCCCTGGGGATGTAGATAGGCTGCGGCGCATGCTCACTCGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTC-CCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgagcgctctccaccagcaccgaaataccacacttccggtatgggccct Alignment from Pairagon CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATG-TCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gagaactggagactactaattctgggtcttgctaacattcttctctgcagCGGGTGGCAGCTGCATTCCCTGGGGATGTAGATAGGCTGCGGCGCATGCTCACTCGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTC-CCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgagcgctctccaccagcaccgaaataccacacttccggtatgggccct Alignment from Exonerate_protein2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATG-TCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATG--GCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gagaactggagactactaattctgggtcttgctaacattcttctctgcagCGGGTGGCAGCTGCATTCCCTGGGGATGTAGATAGGCTGCGGCGCATGCTCACTCGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCC---CTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgagcgctctccaccagcaccgaaataccacacttccggtatgggccct Alignment from Exonerate_coding2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTC---ACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gagaactggagactactaattctgggtcttgctaacattcttctctgcagCGGGTGGCAGCTGCATTCCCTGGGGATGTAGATAGGCTGCGGCGCATG--CTCACTCGTGGAGGAAGGAGCAGTGAGACGCATCAATAT-GTCTCCCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgagcgctctccaccagcaccgaaataccacacttccggtatgggccct Alignment from GeneWise CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gagaactggagactactaattctgggtcttgctaacattcttctctgcagCGGGTGGCAGCTGCATTCCCTGGGGATGTAGATAGGCTGCGGCGCATGCTCACTCGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCCCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgagcgctctccaccagcaccgaaataccacacttccggtatgggccct #### Pygm_ID1689_13 --> 0 - 0 Original Alignment CGCATTGGTGAGGACTAC-ATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATCGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCTCCTATG-GGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from CESAR CGCATTGGTGAGGACTAC-ATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATCGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCTCCTAT-GGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Spaln_aa2Genome CGCATTGGTGAGGACTAC-ATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATcGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCTCCTATGG-GATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Spaln_nt2Genome CGCATTGGTGAGGACTA-CATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATCGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCTCCTATG-GGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Pairagon CGCATTGGTGAGGACTA-CATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATCGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCTCCTATG-GGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Exonerate_protein2genome CGCATTGGTGAGGACTAC-ATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTAT--GTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATCGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCTCCTATGG---GATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Exonerate_coding2genome CGCATTGGTGAGGACTAC-ATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTAT--GTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATCGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCTCCTATGG---GATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from GeneWise CGCATTGGTGAGGACTAC-ATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATCGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCTCCTATGG-GATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga #### Rab3il1_ID2647_3 --> 0 - 0 Original Alignment GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAA-GTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAACGTACGTGCACAGCTGGAGCAGGAGCTTG-GGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from CESAR GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAA-GTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAACGTACGTGCACAGCTGGAGCAGGAGCTT-GGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Spaln_aa2Genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAACGTACGTGCACAGCTGGAGCAGGAGCTTGGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Spaln_nt2Genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAA-GTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAACGTACGTGCACAGCTGGAGCAGGAGCTTGG-GAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Pairagon GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAA-GTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAACGTACGTGCACAGCTGGAGCAGGAGCTTG-GGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Exonerate_protein2genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAACGTACGTGCACAGCTGGAGCAGGAGCTTGGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Exonerate_coding2genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAACGTACGTGCACAGCTGGAGCAGGAGCTTGGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from GeneWise GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAACGTACGTGCACAGCTGGAGCAGGAGCTTGGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCCGGGAAGCAAACATGAAGCAGGCGACATCGGAAAAGC-GTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from CESAR GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCCGGGAAGCAAACATGAAGCAGGCGACATCGGAAAAG-CGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTcCGGGAAGCAAACATGAAGCAGGCGACATCGGAAAAGCG-TTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCCGGGAAGCAAACATGAAGCAGGCGACATCGGAAAAGC-GTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Pairagon GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCCGGGAAGCAAACATGAAGCAGGCGACATCGGAAAAGC-GTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCCGGGAAGCAAACATGAAGCAGGCGACATCGGAAAAGCGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCCGGGAAGCAAACATGAAGCAGGCGACATCGGAAAAGCGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCCGGGAAGCAAACATGAAGCAGGCGACATCGGAAAAGCGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc #### Rasgrp2_ID1706_5 --> 1 - 0 Original Alignment cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTT-GATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTCGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCT-CCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from CESAR cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTT-GATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTCGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACC-TCCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Spaln_aa2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTG-TTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGtTTCGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTC-CTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Spaln_nt2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTG-TTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTCGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCT-CCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Pairagon CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTT-GATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTCGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCT-CCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Exonerate_protein2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTG-TTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACC--TACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTCGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTC---CTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Exonerate_coding2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTG-TTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACC--TACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTCGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTC---CTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from GeneWise CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTCGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTCCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGC-CACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGC-CACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAA-CAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAG-CCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAA-CAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAG-CCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCC--ACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCACA---GCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAG---TGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAAC--CAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCC-ACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from GeneWise CTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagttccaagactaccacagCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGG-CCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCCGTGTTGGAAGAGTGGACCTCAGTTG-CAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGG-CCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCCGTGTTGGAAGAGTGGACCTCAGTTG-CAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGG-CCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCCGTGTTGGAAGAGTGGACCTCAGTTG-CAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGG-CCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCCGTGTTGGAAGAGTGGACCTCAGTTG-CAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATG-GAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGCGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTG-CAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from CESAR GGCAGACTCCGGGGTGAGATG-GAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGCGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGT-GCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAG-TGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGCGCgTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGC-AGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATG-GAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGCGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGG-TGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Pairagon GGCAGACTCCGGGGTGAGATG-GAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGCGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGT-GCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAG-TGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGC--GGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGCGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGC---AGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Exonerate_coding2genome GGCAGACTCCGGGGTGAGATGGAG-TGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGC--GGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGCGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGC---AGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from GeneWise GGCAGACTCCGGGGTGAGATG-GAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGCGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGC-AGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGT-CCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCCACTGATGCAGCTCTCTATGGATTGCCCTT-TGACCTAACAGATGGGCTGAAGGTTGTCCTGggtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from CESAR ATCCTTTTCCTGGGT-CCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCCACTGATGCAGCTCTCTATGGATTGCCCT-TTGACCTAACAGATGGGCTGAAGGTTGTCCTGggtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagatccttttcccagGTC------------CCACTGATGCAGCTCTCTATGGATTGCCCTTT-GACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCC-ACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCCACTGATGCAGCTCTCTATGGATTGCCCTT-TGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Pairagon ATCCTTTTCCTGGGT-CCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCCACTGATGCAGCTCTCTATGGATTGCCCTT-TGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCCACTGATGCAGCTCTCTATGGATTGCCCTTTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Exonerate_coding2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCCACTGATGCAGCTCTCTATGGATTGCCCTTTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCCACTGATGCAGCTCTCTATGGATTGCCCTTTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCC-AGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccaggGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCCAGCTTGTCCCCTCTTTGTGTGCTGCTCT-GAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCC-AGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccaggGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCCAGCTTGTCCCCTCTTTGTGTGCTGCTC-TGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTC-CAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCCAGCTTGTCCCCTCTTTGTGTGCTGCTCT-GAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGT-CCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCCAGCTTGTCCCCTCTTTGTGTGCTGCTCT-GAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCT---CTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTG---AGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa #### Rcor2_ID2091_2 --> 2 - 1 Original Alignment agAGCCCTGCACGCTAT-AGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAc ttcagtggtctcatgtttctgtgagtgcgtggcgctgctgtcactcgtagagAGCCCTGCACGCTATCAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGT-CCCCAACCACTGTGTATCAGATGCCAAAcgtgagcgcactgggccctggtcacattcagtcacaggaacagggtttgac Alignment from CESAR agAGCCCTGCACGCTAT-AGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAc ttcagtggtctcatgtttctgtgagtgcgtggcgctgctgtcactcgtagagAGCCCTGCACGCTATCAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGT-CCCCAACCACTGTGTATCAGATGCCAAAcgtgagcgcactgggccctggtcacattcagtcacaggaacagggtttgac Alignment from Spaln_aa2Genome AGAGCCCTGCACGCTAT-AGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC ttcagtggtctcatgtttctgtgagtgcgtggcgctgctgtcactcgtagAGAGCCCTGCACGCTATcAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCC-AACCACTGTGTATCAGATGCCAAACgtgagcgcactgggccctggtcacattcagtcacaggaacagggtttgac Alignment from Spaln_nt2Genome AGAGCCCTGCACGCTAT-AGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC ttcagtggtctcatgtttctgtgagtgcgtggcgctgctgtcactcgtagAGAGCCCTGCACGCTATCAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGT-CCCCAACCACTGTGTATCAGATGCCAAACgtgagcgcactgggccctggtcacattcagtcacaggaacagggtttgac Alignment from Pairagon AGAGCCCTGCACGCTAT-AGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC ttcagtggtctcatgtttctgtgagtgcgtggcgctgctgtcactcgtagAGAGCCCTGCACGCTATCAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGT-CCCCAACCACTGTGTATCAGATGCCAAACgtgagcgcactgggccctggtcacattcagtcacaggaacagggtttgac Alignment from Exonerate_protein2genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC ttcagtggtctcatgtttctgtgagtgcgtggcgctgctgtcactcgtagAGAGCCCTGCACGCTATCAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCAACCACTGTGTATCAGATGCCAAACgtgagcgcactgggccctggtcacattcagtcacaggaacagggtttgac Alignment from Exonerate_coding2genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC ttcagtggtctcatgtttctgtgagtgcgtggcgctgctgtcactcgtagAGAGCCCTGCACGCTATCAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCAACCACTGTGTATCAGATGCCAAACgtgagcgcactgggccctggtcacattcagtcacaggaacagggtttgac Alignment from GeneWise AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC ttcagtggtctcatgtttctgtgagtgcgtggcgctgctgtcactcgtagAGAGCCCTGCACGCTATCAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCAACCACTGTGTATCAGATGCCAAACgtgagcgcactgggccctggtcacattcagtcacaggaacagggtttgac #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGG-GCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagctATTCGTAGATATGGCAAAGACTTTGGGCGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAG-GAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGG-GCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagctATTCGTAGATATGGCAAAGACTTTGGGCGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAA-GGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTT-GGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTgGGCGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGGAAG-ACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGAC-TTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGCGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAG-GAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGG-GCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGCGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAG-GAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTT-GGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAA--GTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGCGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGG---AAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGC---TATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTT--GGGCGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGG-AAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGCGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAG-ATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg ggcgggtgttagagctcctgcagggtactcactccgttttcctcctccagggGCCCCCAACACCGCTGAGCTTAAACATCTGCCGAGTAAACCGGAACTCTGGGAGCT-TCTCGGTGGGGATGAGATCTTCTTGCTGTGTGACAAGGTACAGAAAggtatgtactggactctgcatggagaggggaggggtgaggctgagtggagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAG-ATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg ggcgggtgttagagctcctgcagggtactcactccgttttcctcctccagggGCCCCCAACACCGCTGAGCTTAAACATCTGCCGAGTAAACCGGAACTCTGGGAGC-TTCTCGGTGGGGATGAGATCTTCTTGCTGTGTGACAAGGTACAGAAAggtatgtactggactctgcatggagaggggaggggtgaggctgagtggagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggcgggtgttagagctcctgcagggtactcactccgttttcctcctccagGGGCCCCCAACACCGCTGAGCTTAAACATCTGCCGAGTAAACCGGAACTCTGGGAGCTTCTCGGTGGGGATGAGATCTTCTTGCTGTGTGACAAGGTACAGAAAGgtatgtactggactctgcatggagaggggaggggtgaggctgagtggagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAG-ATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggcgggtgttagagctcctgcagggtactcactccgttttcctcctccagGGGCCCCCAACACCGCTGAGCTTAAACATCTGCCGAGTAAACCGGAACTCTGGGAGCT-TCTCGGTGGGGATGAGATCTTCTTGCTGTGTGACAAGGTACAGAAAGgtatgtactggactctgcatggagaggggaggggtgaggctgagtggagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAG-ATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggcgggtgttagagctcctgcagggtactcactccgttttcctcctccagGGGCCCCCAACACCGCTGAGCTTAAACATCTGCCGAGTAAACCGGAACTCTGGGAGCT-TCTCGGTGGGGATGAGATCTTCTTGCTGTGTGACAAGGTACAGAAAGgtatgtactggactctgcatggagaggggaggggtgaggctgagtggagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggcgggtgttagagctcctgcagggtactcactccgttttcctcctccagGGGCCCCCAACACCGCTGAGCTTAAACATCTGCCGAGTAAACCGGAACTCTGGGAGCTTCTCGGTGGGGATGAGATCTTCTTGCTGTGTGACAAGGTACAGAAAGgtatgtactggactctgcatggagaggggaggggtgaggctgagtggagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggcgggtgttagagctcctgcagggtactcactccgttttcctcctccagGGGCCCCCAACACCGCTGAGCTTAAACATCTGCCGAGTAAACCGGAACTCTGGGAGCTTCTCGGTGGGGATGAGATCTTCTTGCTGTGTGACAAGGTACAGAAAGgtatgtactggactctgcatggagaggggaggggtgaggctgagtggagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggcgggtgttagagctcctgcagggtactcactccgttttcctcctccagGGGCCCCCAACACCGCTGAGCTTAAACATCTGCCGAGTAAACCGGAACTCTGGGAGCTTCTCGGTGGGGATGAGATCTTCTTGCTGTGTGACAAGGTACAGAAAGgtatgtactggactctgcatggagaggggaggggtgaggctgagtggagg #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGC-CAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg acatggctggacatggaggaccagagccccattcttcctgtacactctagACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCCAGGCCCTGTGTGTGCGGCTGCCAGAAGCTA-TGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtaagaagggtagcctggagggtaggggcacaaagacaagcacatgaggg Alignment from CESAR ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGC-CAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg acatggctggacatggaggaccagagccccattcttcctgtacactctagACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCCAGGCCCTGTGTGTGCGGCTGCCAGAAGCT-ATGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtaagaagggtagcctggagggtaggggcacaaagacaagcacatgaggg Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggaggaccagagccccattcttcctgtacactctagACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCCAGGCCCTGTGTGTGCGGCTGCCAGAAGCTATGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagaagggtagcctggagggtaggggcacaaagacaagcacatgaggg Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGC-CAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggaggaccagagccccattcttcctgtacactctagACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCCAGGCCCTGTGTGTGCGGCTGCCAGAAGCTA-TGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagaagggtagcctggagggtaggggcacaaagacaagcacatgaggg Alignment from Pairagon ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTG-CCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggaggaccagagccccattcttcctgtacactctagACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCCAGGCCCTGTGTGTGCGGCTGCCAGAAGCTA-TGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagaagggtagcctggagggtaggggcacaaagacaagcacatgaggg Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggaggaccagagccccattcttcctgtacactctagACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCCAGGCCCTGTGTGTGCGGCTGCCAGAAGCTATGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagaagggtagcctggagggtaggggcacaaagacaagcacatgaggg Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggaggaccagagccccattcttcctgtacactctagACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCCAGGCCCTGTGTGTGCGGCTGCCAGAAGCTATGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagaagggtagcctggagggtaggggcacaaagacaagcacatgaggg Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggaggaccagagccccattcttcctgtacactctagACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCCAGGCCCTGTGTGTGCGGCTGCCAGAAGCTATGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagaagggtagcctggagggtaggggcacaaagacaagcacatgaggg #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGC-TCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggataggtGTCTCTTTGGAGGTCCTCAGAGCTCATGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCaggtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from CESAR gtGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggataggtGTCTCTTTGGAGGTCCTCAGAGCTCATGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCaggtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Spaln_aa2Genome GTGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGgTCCTCAGAGCTCATGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGC-TCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCCTCAGAGCTCATGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Pairagon GTGTCTCTTTGGAGG-GCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCCTCAGAGCTCATGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Exonerate_protein2genome GTGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCCTCAGAGCTCATGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Exonerate_coding2genome GTGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCCTCAGAGCTCATGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from GeneWise CTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggataggtgtctctttggagGTCC---------TCAGAGCTCATGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGG-CCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGG-GGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAggtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGG-CCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCG-GGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAggtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCA-GGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTT-CCCCGGGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGG-CCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGG-GGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGC-TTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAG-TCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGC-TTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCC-CAGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Spaln_nt2Genome GACCGCCTTATCGGGGCCACCGGCAG-CTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGT-CCCAGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAG-CTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCC-AGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Exonerate_protein2genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Exonerate_coding2genome GACCGCCTTATCGGGGCCACCGGCAGC-TTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGA tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCA-GTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGGtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCC---CAGGTCCCTGAGGAC tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGGTGAGTATACTTAGGAGCCCTTTTTCTcctctggcagctggtcaatcctt #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCA-CCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCT-CTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCaggtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from CESAR GGCTTTACATATGTGGCA-CCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCT-CTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCaggtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCA-CCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCT-CTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Pairagon GGCTTTACATATGTGGCA-CCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCT-CTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTC-CGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTGTGG-CCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from CESAR AGGCACCCCTTTTTC-CGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTGTG-GCCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Spaln_aa2Genome AGGCACCCCTTTTTC-CGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCcCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTGTGGC-CCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGG-CACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTGTGGC-CCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Pairagon AGGCACCCCTT-TTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTGTGG-CCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Exonerate_protein2genome AGGCACCCCTTTTTC-CGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTG--GACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTGTGGC---CCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Exonerate_coding2genome AGGCACCCCTTTTTC-CGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTG--GACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTGTGGC---CCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from GeneWise --CACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagagGCACCCCTTCTTCCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTGTGGC-CCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGCAACCCCACTCAGCGAATTGGGGGTGGCCTGG-AGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from CESAR TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGCAACCCCACTCAGCGAATTGGGGGTGGCC-TGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Spaln_aa2Genome TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGcAACCCCACTCAGCGAATTGGGGGTGGCCT-GGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Spaln_nt2Genome TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGCAACCCCACTCAGCGAATTGGGGGTGGCCTGG-AGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Pairagon TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGCAACCCCACTCAGCGAATTGGGGGTGGCCT-GGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGCAACCCCACTCAGCGAATTGGGGGTGGCCTGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGCAACCCCACTCAGCGAATTGGGGGTGGCCTGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGCAACCCCACTCAGCGAATTGGGGGTGGCCTGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTG-CGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gattaccagagagggcctgcccttaacctgtgctgttaatgtgcttacaggGCACCAGAGATTCTATTGCCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGG-AGCCCTGATGTATGACATGCTCACTGAATCGgtactaacaacttccttggtgggtgttagggagatgttggggagatctct Alignment from CESAR gGCCCCAGAGATTCTAGTG-CGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gattaccagagagggcctgcccttaacctgtgctgttaatgtgcttacaggGCACCAGAGATTCTATTGCCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCC-TGGAGCCCTGATGTATGACATGCTCACTGAATCGgtactaacaacttccttggtgggtgttagggagatgttggggagatctct Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTG-CGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gattaccagagagggcctgcccttaacctgtgctgttaatgtgcttacagGGCACCAGAGATTCTATTGcCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCT-GGAGCCCTGATGTATGACATGCTCACTGAATCGgtactaacaacttccttggtgggtgttagggagatgttggggagatctct Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGC-GCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gattaccagagagggcctgcccttaacctgtgctgttaatgtgcttacagGGCACCAGAGATTCTATTGCCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGG-AGCCCTGATGTATGACATGCTCACTGAATCGgtactaacaacttccttggtgggtgttagggagatgttggggagatctct Alignment from Pairagon GGCCCCAGAGATTCTAGTG-CGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gattaccagagagggcctgcccttaacctgtgctgttaatgtgcttacagGGCACCAGAGATTCTATTGCCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCT-GGAGCCCTGATGTATGACATGCTCACTGAATCGgtactaacaacttccttggtgggtgttagggagatgttggggagatctct Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTG-CGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGC--CTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gattaccagagagggcctgcccttaacctgtgctgttaatgtgcttacagGGCACCAGAGATTCTATTGCCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCT---GGAGCCCTGATGTATGACATGCTCACTGAATCGgtactaacaacttccttggtgggtgttagggagatgttggggagatctct Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTG-CGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGC--CTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gattaccagagagggcctgcccttaacctgtgctgttaatgtgcttacagGGCACCAGAGATTCTATTGCCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCT---GGAGCCCTGATGTATGACATGCTCACTGAATCGgtactaacaacttccttggtgggtgttagggagatgttggggagatctct Alignment from GeneWise GGCCCCAGAGATTCTA-GTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gattaccagagagggcctgcccttaacctgtgctgttaatgtgcttacagGGCACCAGAGATTCTATTGCCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCT-GGAGCCCTGATGTATGACATGCTCACTGAATCGgtactaacaacttccttggtgggtgttagggagatgttggggagatctct #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTA-GCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagcTTCTACCTGGCGGAGATCACACTACGCCCTGGGCCATCTCCATTTCCATGGCATCATCT-CCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGggtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTA-GCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagcTTCTACCTGGCGGAGATCACACTACGCCCTGGGCCATCTCCATTTCCATGGCATCATC-TCCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGggtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTACGCCCTGGGCCATCTCCATTTCCATGGCATCATCTCCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTA-GCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTACGCCCTGGGCCATCTCCATTTCCATGGCATCATCT-CCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTA-GCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTACGCCCTGGGCCATCTCCATTTCCATGGCATCATCT-CCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTACGCCCTGGGCCATCTCCATTTCCATGGCATCATCTCCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGC---CCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTA--CGCCCTGGGCCATCTCCATTTCCATGGCATCATCTC-CGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTACGCCCTGGGCCATCTCCATTTCCATGGCATCATCTCCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAG-AGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agatcccctctgtcccaggagtgtattgacacttcatgttctcttttcagcATTGAGGAAATTTTGGCTGACTCTGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGCAGGAGCCGGGCATGGCTGAAGGAAGGTGGCG-TGATGGGCCTCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTggtgagtaaggacagctgacctaggaatccagagttgacctcccctgttgc Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAG-AGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agatcccctctgtcccaggagtgtattgacacttcatgttctcttttcagcATTGAGGAAATTTTGGCTGACTCTGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGCAGGAGCCGGGCATGGCTGAAGGAAGGTGGC-GTGATGGGCCTCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTggtgagtaaggacagctgacctaggaatccagagttgacctcccctgttgc Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agatcccctctgtcccaggagtgtattgacacttcatgttctcttttcagCATTGAGGAAATTTTGGCTGACTCTGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGCAGGAGCCGGGCATGGCTGAAGGAAGGTGGCGTGATGGGCCTCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTGgtgagtaaggacagctgacctaggaatccagagttgacctcccctgttgc Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAG-AGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agatcccctctgtcccaggagtgtattgacacttcatgttctcttttcagCATTGAGGAAATTTTGGCTGACTCTGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGCAGGAGCCGGGCATGGCTGAAGGAAGGTGG-CGTGATGGGCCTCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTGgtgagtaaggacagctgacctaggaatccagagttgacctcccctgttgc Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAG-AGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agatcccctctgtcccaggagtgtattgacacttcatgttctcttttcagCATTGAGGAAATTTTGGCTGACTCTGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGCAGGAGCCGGGCATGGCTGAAGGAAGGTGGC-GTGATGGGCCTCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTGgtgagtaaggacagctgacctaggaatccagagttgacctcccctgttgc Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agatcccctctgtcccaggagtgtattgacacttcatgttctcttttcagCATTGAGGAAATTTTGGCTGACTCTGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGCAGGAGCCGGGCATGGCTGAAGGAAGGTGGCGTGATGGGCCTCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTGgtgagtaaggacagctgacctaggaatccagagttgacctcccctgttgc Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agatcccctctgtcccaggagtgtattgacacttcatgttctcttttcagCATTGAGGAAATTTTGGCTGACTCTGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGCAGGAGCCGGGCATGGCTGAAGGAAGGTGGCGTGATGGGCCTCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTGgtgagtaaggacagctgacctaggaatccagagttgacctcccctgttgc Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agatcccctctgtcccaggagtgtattgacacttcatgttctcttttcagCATTGAGGAAATTTTGGCTGACTCTGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGCAGGAGCCGGGCATGGCTGAAGGAAGGTGGCGTGATGGGCCTCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTGgtgagtaaggacagctgacctaggaatccagagttgacctcccctgttgc #### Rrp12_ID8296_27 --> 1 - 2 Original Alignment aTTCGAGTTGGTGAAGGGTCTGCTACCC-GCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gaggaggggttcttggcaacctctagaccttgttcgtttgcttgttttagaTTTGAGTTGGTGAAGGGTCTGCTACCCCGCAGAGTACCACAAAGTCCTGATAAACATCAGGA-AGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGCGACaggtaatgcatgactcaaccccaagatcttagtctacccccacccaaattct Alignment from CESAR aTTCGAGTTGGTGAAGGGTCTGCTA-CCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gaggaggggttcttggcaacctctagaccttgttcgtttgcttgttttagaTTTGAGTTGGTGAAGGGTCTGCTACCCCGCAGAGTACCACAAAGTCCTGATAAACATCAGGA-AGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGCGACaggtaatgcatgactcaaccccaagatcttagtctacccccacccaaattct Alignment from Spaln_aa2Genome ATTCGAGTTGGTGAAGGGTCTGCTA-CCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctctagaccttgttcgtttgcttgttttagATTTGAGTTGGTGAAGGGTCTGCTAcCCCGCAGAGTACCACAAAGTCCTGATAAACATCAGGAA-GCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGCGACAGgtaatgcatgactcaaccccaagatcttagtctacccccacccaaattct Alignment from Spaln_nt2Genome ATTCGAGTTGGTGAAGGGTCTGCTA-CCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctctagaccttgttcgtttgcttgttttagATTTGAGTTGGTGAAGGGTCTGCTACCCCGCAGAGTACCACAAAGTCCTGATAAACATCAGG-AAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGCGACAGgtaatgcatgactcaaccccaagatcttagtctacccccacccaaattct Alignment from Pairagon ATTCGAGTTGGTGAAGGGTCTGCTA-CCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctctagaccttgttcgtttgcttgttttagATTTGAGTTGGTGAAGGGTCTGCTACCCCGCAGAGTACCACAAAGTCCTGATAAACATCAGG-AAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGCGACAGgtaatgcatgactcaaccccaagatcttagtctacccccacccaaattct Alignment from Exonerate_protein2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctctagaccttgttcgtttgcttgttttagATTTGAGTTGGTGAAGGGTCTGCTACCCCGCAGAGTACCACAAAGTCCTGATAAACATCAGGAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGCGACAGgtaatgcatgactcaaccccaagatcttagtctacccccacccaaattct Alignment from Exonerate_coding2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctctagaccttgttcgtttgcttgttttagATTTGAGTTGGTGAAGGGTCTGCTACCCCGCAGAGTACCACAAAGTCCTGATAAACATCAGGAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGCGACAGgtaatgcatgactcaaccccaagatcttagtctacccccacccaaattct Alignment from GeneWise ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctctagaccttgttcgtttgcttgttttagATTTGAGTTGGTGAAGGGTCTGCTACCCCGCAGAGTACCACAAAGTCCTGATAAACATCAGGAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGCGACAGgtaatgcatgactcaaccccaagatcttagtctacccccacccaaattct #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTC-CTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gagcctgctgctatggtcactctgtttacctaactccttctccctcccagTTGGTGAATAGCTTCCCTGGACAAAGCTACCGAGAAGGTTCTCGATC-TGCCAGCTCTGATTTCACCaggtgatcgttctgggcttcctcatttggcttggtagctgcagggtacctag Alignment from CESAR TTGGTGAATAGCTTC-CTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gagcctgctgctatggtcactctgtttacctaactccttctccctcccagTTGGTGAATAGCTTCCCTGGACAAAGCTACCGAGAAGGTTCTCG-ATCTGCCAGCTCTGATTTCACCaggtgatcgttctgggcttcctcatttggcttggtagctgcagggtacctag Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gagcctgctgctatggtcactctgtttacctaactccttctccctcccagTTGGTGAATAGCTTCCCTGGACAAAGCTACCGAGAAGGTTCTCGATCTGCCAGCTCTGATTTCACCAGgtgatcgttctgggcttcctcatttggcttggtagctgcagggtacctag Alignment from Spaln_nt2Genome TTGGTGAATAGCTT-CCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gagcctgctgctatggtcactctgtttacctaactccttctccctcccagTTGGTGAATAGCTTCCCTGGACAAAGCTACCGAGAAGGTTCTCGAT-CTGCCAGCTCTGATTTCACCAGgtgatcgttctgggcttcctcatttggcttggtagctgcagggtacctag Alignment from Pairagon TTGGTGAATAGCTT-CCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gagcctgctgctatggtcactctgtttacctaactccttctccctcccagTTGGTGAATAGCTTCCCTGGACAAAGCTACCGAGAAGGTTCTCGAT-CTGCCAGCTCTGATTTCACCAGgtgatcgttctgggcttcctcatttggcttggtagctgcagggtacctag Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gagcctgctgctatggtcactctgtttacctaactccttctccctcccagTTGGTGAATAGCTTCCCTGGACAAAGCTACCGAGAAGGTTCTCGATCTGCCAGCTCTGATTTCACCAGgtgatcgttctgggcttcctcatttggcttggtagctgcagggtacctag Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gagcctgctgctatggtcactctgtttacctaactccttctccctcccagTTGGTGAATAGCTTCCCTGGACAAAGCTACCGAGAAGGTTCTCGATCTGCCAGCTCTGATTTCACCAGgtgatcgttctgggcttcctcatttggcttggtagctgcagggtacctag Alignment from GeneWise TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gagcctgctgctatggtcactctgtttacctaactccttctccctcccagTTGGTGAATAGCTTCCCTGGACAAAGCTACCGAGAAGGTTCTCGATCTGCCAGCTCTGATTTCACCAGgtgatcgttctgggcttcctcatttggcttggtagctgcagggtacctag #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGC-CGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagagGCAGACCGAGCTGAAGTGAGCCCGCTTTGCCAAAAACTTCCTGCCAATCCTCT-CAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from CESAR agGCTGACCGAGCTGAAGTGAGC-CGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagagGCAGACCGAGCTGAAGTGAGCCCGCTTTGCCAAAAACTTCCTGCCAATCC-TCTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAG-CCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCCGCTTTGCCAAAAACTTCCTGCCAATCCTC-TCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAG-CCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCCGCTTTGCCAAAAACTTCCTGCCAATCCTC-TCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag #### Rrp12_ID8306_17 --> 0 - 1 Original Alignment ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGAT-GTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg gcatgcagggttacaagtcacattttaacagaccgttctttatctaccagATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGTCCACAGAACGTGGCTGCCTCCTTCAAAGGCCTGGCACGCACTTTGGGCACAG-TATCAATGAATGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggtaagtggggaagcttttgggaagatgacctggggtgctagcctgctctg Alignment from CESAR ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGAT-GTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg gcatgcagggttacaagtcacattttaacagaccgttctttatctaccagATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGTCCACAGAACGTGGCTGCCTCCTTCAAAGGCCTGGCACGCACTTTGGGCACA-GTATCAATGAATGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggtaagtggggaagcttttgggaagatgacctggggtgctagcctgctctg Alignment from Spaln_aa2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGAT-GTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggttacaagtcacattttaacagaccgttctttatctaccagATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGTCCACAGAAcGTGGCTGCCTCCTTCAAAGGCCTGGCACGCACTTTGGGCACAGT-ATCAATGAATGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtaagtggggaagcttttgggaagatgacctggggtgctagcctgctctg Alignment from Spaln_nt2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGAT-GTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggttacaagtcacattttaacagaccgttctttatctaccagATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGTCCACAGAACGTGGCTGCCTCCTTCAAAGGCCTGGCACGCACTTTGGGCACAG-TATCAATGAATGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtaagtggggaagcttttgggaagatgacctggggtgctagcctgctctg Alignment from Pairagon ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAG-ATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggttacaagtcacattttaacagaccgttctttatctaccagATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGTCCACAGAACGTGGCTGCCTCCTTCAAAGGCCTGGCACGCACTTTGGGCACAG-TATCAATGAATGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtaagtggggaagcttttgggaagatgacctggggtgctagcctgctctg Alignment from Exonerate_protein2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggttacaagtcacattttaacagaccgttctttatctaccagATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGTCCACAGAACGTGGCTGCCTCCTTCAAAGGCCTGGCACGCACTTTGGGCACAGTATCAATGAATGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtaagtggggaagcttttgggaagatgacctggggtgctagcctgctctg Alignment from Exonerate_coding2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAG-ATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggttacaagtcacattttaacagaccgttctttatctaccagATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGTCCACAGAACGTGGCTGCCTCCTTCAAAGGCCTGGCACGCACTTTGGGCACAG-TATCAATGAATGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtaagtggggaagcttttgggaagatgacctggggtgctagcctgctctg Alignment from GeneWise ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggttacaagtcacattttaacagaccgttctttatctaccagATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGTCCACAGAACGTGGCTGCCTCCTTCAAAGGCCTGGCACGCACTTTGGGCACAGTATCAATGAATGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtaagtggggaagcttttgggaagatgacctggggtgctagcctgctctg #### Rrp12_ID8315_8 --> 2 - 0 Original Alignment gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTG-CTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtaggtTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGA-CTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from CESAR gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTG-CTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtaggtTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGA-CTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Spaln_aa2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTG-CTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGcCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAC-TGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Spaln_nt2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTG-CTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGA-CTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Pairagon GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTG-CTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGA-CTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Exonerate_protein2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTG-CTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAG--AGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAC---TGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Exonerate_coding2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCT-GAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAC-TGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from GeneWise GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTG-CTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAC-TGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCC-CTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGG-CCAGAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgcgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACG-CCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGG-CCAGAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgcgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCAGAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCC-TGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGG-CCAGAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACG-CCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGG-CCAGAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCAGAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCC--TGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACA-CCCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGG-CCAGAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGAACACCATCACCAAA gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCAGAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGTGGGTATGGGTAGGAgctggaagggtggggtagcaagccggaaggatgg #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTC-CACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCCACGGAAAGGGCTCAGGCAAGATGAAGACTG-GCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTC-CACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCCACGGAAAGGGCTCAGGCAAGATGAAGACT-GGCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCCACGGAAAGGGCTCAGGCAAGATGAAGACTGGCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTT-CCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCCACGGAAAGGGCTCAGGCAAGATGAAGACTG-GCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTT-CCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCCACGGAAAGGGCTCAGGCAAGATGAAGACTG-GCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCCACGGAAAGGGCTCAGGCAAGATGAAGACTGGCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCCACGGAAAGGGCTCAGGCAAGATGAAGACTGGCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from GeneWise -CTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcaggcattccggcagCTGTCCCACCGCTTCCCACGGAAAGGGCTCAGGCAAGATGAAGACTGG-CGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGG-GAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG atggggcaggtagcagacagctcatccttatcctctgcttaccttgacaggGCCATTGATGACAAGTACAGCCGACGGCGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGG-GAAAGATGGCTATAAGCCTGATGTTAAGATTGAATACGTGGATGAGACAAGCAGGAAACTGACTCCCAAGAAGgtaataaagatcatgtggaaatggtcagaccacaggtgacagggtaaatt Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGG-GAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG atggggcaggtagcagacagctcatccttatcctctgcttaccttgacaggGCCATTGATGACAAGTACAGCCGACGGCGAGGAGTACAGGGGCTTCACCCAGGACTTCAAG-GGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATACGTGGATGAGACAAGCAGGAAACTGACTCCCAAGAAGgtaataaagatcatgtggaaatggtcagaccacaggtgacagggtaaatt Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG atggggcaggtagcagacagctcatccttatcctctgcttaccttgacagGGCCATTGATGACAAGTACAGCCGACGGCGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATACGTGGATGAGACAAGCAGGAAACTGACTCCCAAGAAGgtaataaagatcatgtggaaatggtcagaccacaggtgacagggtaaatt Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGG-GAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG atggggcaggtagcagacagctcatccttatcctctgcttaccttgacagGGCCATTGATGACAAGTACAGCCGACGGCGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGG-GAAAGATGGCTATAAGCCTGATGTTAAGATTGAATACGTGGATGAGACAAGCAGGAAACTGACTCCCAAGAAGgtaataaagatcatgtggaaatggtcagaccacaggtgacagggtaaatt Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGG-GAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG atggggcaggtagcagacagctcatccttatcctctgcttaccttgacagGGCCATTGATGACAAGTACAGCCGACGGCGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGG-GAAAGATGGCTATAAGCCTGATGTTAAGATTGAATACGTGGATGAGACAAGCAGGAAACTGACTCCCAAGAAGgtaataaagatcatgtggaaatggtcagaccacaggtgacagggtaaatt Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG atggggcaggtagcagacagctcatccttatcctctgcttaccttgacagGGCCATTGATGACAAGTACAGCCGACGGCGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATACGTGGATGAGACAAGCAGGAAACTGACTCCCAAGAAGgtaataaagatcatgtggaaatggtcagaccacaggtgacagggtaaatt Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG atggggcaggtagcagacagctcatccttatcctctgcttaccttgacagGGCCATTGATGACAAGTACAGCCGACGGCGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATACGTGGATGAGACAAGCAGGAAACTGACTCCCAAGAAGgtaataaagatcatgtggaaatggtcagaccacaggtgacagggtaaatt Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG atggggcaggtagcagacagctcatccttatcctctgcttaccttgacagGGCCATTGATGACAAGTACAGCCGACGGCGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATACGTGGATGAGACAAGCAGGAAACTGACTCCCAAGAAGgtaataaagatcatgtggaaatggtcagaccacaggtgacagggtaaatt #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGCAAGAAACTGGAGTCCCGTCAGCGTGGCT-GGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from CESAR GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGCAAGAAACTGGAGTCCCGTCAGCGTGGCT-GGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_aa2Genome GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGcAAGAAACTGGAGTCCCGTCAGCGTGGCTG-GAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_nt2Genome GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGCAAGAAACTGGAGTCCCGTCAGCGTGGCT-GGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Pairagon GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGCAAGAAACTGGAGTCCCGTCAGCGTGGCT-GGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGCAAGAAACTGGAGTCCCGTCAGCGTGGCTGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGCAAGAAACTGGAGTCCCGTCAGCGTGGCTGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGCAAGAAACTGGAGTCCCGTCAGCGTGGCTGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAG-AAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcaggataactcctcttctcccacagagGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGC-GCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtaggacagagcaaggacatcatgtgggacttgtctctgagtgtgtgaga Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAG-AAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcaggataactcctcttctcccacagagGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTGGAGAAGGGGCGCCGGCTGCGG-CGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtaggacagagcaaggacatcatgtgggacttgtctctgagtgtgtgaga Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcaggataactcctcttctcccacagAGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtaggacagagcaaggacatcatgtgggacttgtctctgagtgtgtgaga Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAG-AAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcaggataactcctcttctcccacagAGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGC-GCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtaggacagagcaaggacatcatgtgggacttgtctctgagtgtgtgaga Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAG-AAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcaggataactcctcttctcccacagAGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGC-GCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtaggacagagcaaggacatcatgtgggacttgtctctgagtgtgtgaga Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcaggataactcctcttctcccacagAGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtaggacagagcaaggacatcatgtgggacttgtctctgagtgtgtgaga Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcaggataactcctcttctcccacagAGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtaggacagagcaaggacatcatgtgggacttgtctctgagtgtgtgaga Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcaggataactcctcttctcccacagAGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtaggacagagcaaggacatcatgtgggacttgtctctgagtgtgtgaga #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAG-GAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggaccagcttaggagataccatttacatggaaaattatatttttctaggCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGCGAGAAGGACCCTGTGGCCCAGCCGCCACCAT-GGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAG-GAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggaccagcttaggagataccatttacatggaaaattatatttttctaggCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGCGAGAAGGACCCTGTGGCCCAGCCGCCACCA-TGGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAG-GAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGcGAGAAGGACCCTGTGGCCCAGCCGCCACCATG-GATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAG-GAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCC------CGAGGAGGAGACCCTTGAGGATGAGCGAGAAGGACCCTGTGGCCCAGCCGCCACCAT-GGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAG-GAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGCGAGAAGGACCCTGTGGCCCAGCCGCCACCAT-GGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGCGAGAAGGACCCTGTGGCCCAGCCGCCACCATGGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGCGAGAAGGACCCTGTGGCCCAGCCGCCACCATGGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from GeneWise -CTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGCGAGAAGGACCCTGTGGCCCAGCCGCCACCATGGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGAC-GTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagggGTACTGCAGGACGGGGAAGATCGTGCTGGTGAATGTGAACATGGTGGACAAGG-GCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from CESAR ggGTACTGCAGGACGGGGAGGAC-GTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagggGTACTGCAGGACGGGGAAGATCGTGCTGGTGAATGTGAACATGGTGGACAAG-GGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATCGTGCTGGTGAATGTGAACATGGTGGACAAGGGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGG-AGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATCGTGCTGGTGAATGTGAACATGGTGGACAAGG-GCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Pairagon GGGTACTGCAGGACGGGGAGGA-CGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATCGTGCTGGTGAATGTGAACATGGTGGACAAGG-GCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATCGTGCTGGTGAATGTGAACATGGTGGACAAGGGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGT---GCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGAT--CGTGCTGGTGAATGTGAACATGGTGGACAAGGG-CGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATCGTGCTGGTGAATGTGAACATGGTGGACAAGGGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCC-ATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagagGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGG-GAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGgggtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from CESAR agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCC-ATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagagGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGgggtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAA-CCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCCATGGCCTTGCGACAGCGGGAAGAACTGC-GGGGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Pairagon AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAA-CCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGG-GAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCT-GAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTCGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAG-CTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCT-GAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTCGAGCCACAACAGGCCCTGCTATCTCAGCCCCTA-GCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTCGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCT-GAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTCGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAG-CTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCT-GAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTCGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAG-CTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTCGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTCGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTCGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTT-GTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTCGTAAAGAAGAATTGGAAGGACCTAGTAT-TGCCTGTCGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTggtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from CESAR CTTCTAGCCTGTGTT-GTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTCGTAAAGAAGAATTGGAAGGACCTAGTA-TTGCCTGTCGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTggtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTCGTAAAGAAGAATTGGAAGGACCTAGTATTGCCTGTCGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTT-GTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTCGTAAAGAAGAATTGGAAGGACCTAGTAT-TGCCTGTCGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Pairagon CTTCTAGCCTGTGTT-GTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTCGTAAAGAAGAATTGGAAGGACCTAGTAT-TGCCTGTCGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTCGTAAAGAAGAATTGGAAGGACCTAGTATTGCCTGTCGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTCGTAAAGAAGAATTGGAAGGACCTAGTATTGCCTGTCGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTCGTAAAGAAGAATTGGAAGGACCTAGTATTGCCTGTCGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATCCGCCGGAGCCGCCACCCACACTCTCTGA-AACTGAGGAGGCACCCATGCACTGGCTCAATggtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATCCGCCGGAGCCGCCACCCACACTCTCTGA-AACTGAGGAGGCACCCATGCACTGGCTCAATggtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATCCGCCGGAGCCGCCACCCACACTCTCTGAAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATCCGCCGGAGCCGCCACCCACACTCTCTGA-AACTGAGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATCCGCCGGAGCCGCCACCCACACTCTCTGA-AACTGAGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATCCGCCGGAGCCGCCACCCACACTCTCTGAAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATCCGCCGGAGCCGCCACCCACACTCTCTGAAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATCCGCCGGAGCCGCCACCCACACTCTCTGAAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGC-TCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagatGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCCTCCAGCAGCTTCACACAGAGTCGCAGCA-CCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGC-TCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagatGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCCTCCAGCAGCTTCACACAGAGTCGCAGCA-CCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCCTCCAGCAGCTTCACACAGAGTCGCAGCACCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGG-CTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCCTCCAGCAGCTTCACACAGAGTCGCAGCA-CCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGG-CTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCCTCCAGCAGCTTCACACAGAGTCGCAGCA-CCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCCTCCAGCAGCTTCACACAGAGTCGCAGCACCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCCTCCAGCAGCTTCACACAGAGTCGCAGCACCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCCTCCAGCAGCTTCACACAGAGTCGCAGCACCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACA-TCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACACTCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGT-TGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtggtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACA-TCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACACTCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAG-TTGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtggtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACA-TCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACAcTCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTT-GAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACA-TCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACACTCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGT-TGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACA-TCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACACTCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGT-TGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACA-TCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAG--TATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACACTCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTT---GAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATC---CTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACA--CTCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTT-GAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACACTCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTTGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCT-GTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtaggAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTCGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCC-GCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCT-GTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtaggAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTCGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCC-GCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCT-GTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTcGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCG-CGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCT-GTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTCGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTG-CCCGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCT-GTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTCGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCC-GCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCT-GTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCC--CGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTCGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCG---CGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGT---CTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCT--CGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCG-CGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTCGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACA-CATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACCATGTCACAGGAACACACGTCAGTACACCTGCCG-ACCTACCTATGAGCTGCTCTTTCTGGGCACAggtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACA-CATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACCATGTCACAGGAACACACGTCAGTACACCTGCC-GACCTACCTATGAGCTGCTCTTTCTGGGCACAggtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACCATGTCACAGGAACACACGTCAGTACACCTGCCGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACA-CATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACCATGTCACAGGAACACACGTCAGTACACCTGCC-GACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACA-CATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACCATGTCACAGGAACACACGTCAGTACACCTGCC-GACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACCATGTCACAGGAACACACGTCAGTACACCTGCCGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACCATGTCACAGGAACACACGTCAGTACACCTGCCGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACCATGTCACAGGAACACACGTCAGTACACCTGCCGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAA-GTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tccccattaggcctcctgttgtgagagctcctgtttcacccccatcgcagctGATGGCTGGATCCACAAGGCTGTAGTCCTGGGCTCTGGAATGCACATAATTGAAGAGATACAACGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTA-CTCACCAATGCAGgtaagattgcctcactatgccaacagtcaccaatacaggtagtcttgcct Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAA-GTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tccccattaggcctcctgttgtgagagctcctgtttcacccccatcgcagctGATGGCTGGATCCACAAGGCTGTAGTCCTGGGCTCTGGAATGCACATAATTGAAGAGATACAACGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTT-ACTCACCAATGCAGgtaagattgcctcactatgccaacagtcaccaatacaggtagtcttgcct Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAA-GTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATC------- tccccattaggcctcctgttgtgagagctcctgtttcacccccatcgcagCTGATGGCTGGATCCACAAGGCTGTAGTCCTGGGCTCTGGAATGCACATAATTGAAGAGATACAAcGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTACTCACCAATgcaggtaagattgcctcactatgccaacagtcaccaatacaggtagtcttgcct Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAA-GTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tccccattaggcctcctgttgtgagagctcctgtttcacccccatcgcagCTGATGGCTGGATCCACAAGGCTGTAGTCCTGGGCTCTGGAATGCACATAATTGAAGAGATACAACGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTA-CTCACCAATGCAGgtaagattgcctcactatgccaacagtcaccaatacaggtagtcttgcct Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAA-GTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tccccattaggcctcctgttgtgagagctcctgtttcacccccatcgcagCTGATGGCTGGATCCACAAGGCTGTAGTCCTGGGCTCTGGAATGCACATAATTGAAGAGATACAACGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTA-CTCACCAATGCAGgtaagattgcctcactatgccaacagtcaccaatacaggtagtcttgcct Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAA-GTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAG tccccattaggcctcctgttgtgagagctcctgtttcacccccatcgcagCTGATGGCTGGATCCACAAGGCTGTAGTCCTGGGCTCTGGAATGCACATAATTGAAGAGATACAACGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGttactcaccaatgcaggtaagattgcctcactatgccaacagtcaccaatacaggtagtcttgcct Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAA-GTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAG tccccattaggcctcctgttgtgagagctcctgtttcacccccatcgcagCTGATGGCTGGATCCACAAGGCTGTAGTCCTGGGCTCTGGAATGCACATAATTGAAGAGATACAACGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGttactcaccaatgcaggtaagattgcctcactatgccaacagtcaccaatacaggtagtcttgcct Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tccccattaggcctcctgttgtgagagctcctgtttcacccccatcgcagCTGATGGCTGGATCCACAAGGCTGTAGTCCTGGGCTCTGGAATGCACATAATTGAAGAGATACAACGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTACTCACCAATGCAGgtaagattgcctcactatgccaacagtcaccaatacaggtagtcttgcct #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACCGGGACCCCTACTGTGGCTGGGACTCCAGCATCC-TGCGTGCATGGTGGCCACCACCGTAGCCAACaggtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACCGGGACCCCTACTGTGGCTGGGACTCCAGCATC-CTGCGTGCATGGTGGCCACCACCGTAGCCAACaggtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACCGGGACCCCTACTGTGGCTGGGACTCCAGCATCCTGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACCGGGACCCCTACTGTGGCTGGGACTCCAGCATCC-TGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACCGGGACCCCTACTGTGGCTGGGACTCCAGCATCC-TGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATC--CATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACCGGGACCCCTACTGTGGCTGGGACTCCAGCATCCT---GCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATC--CATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACCGGGACCCCTACTGTGGCTGGGACTCCAGCATCCT---GCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACCGGGACCCCTACTGTGGCTGGGACTCCAGCATCCTGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAA-TTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAACTTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACG-GGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAA-TTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAACTTGGAGTTGGACCCTATGGCCATGATGCAGAAGTAC-GGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAACTTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAA-TTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAACTTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACG-GGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Pairagon GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAA-TTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAACTTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACG-GGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAACTTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Exonerate_coding2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAACTTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAACTTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGAT-GAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTTCTGATCGAAGAATCCTCAGAAGAGGAGGAGGAGGAGG-AAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGAT-GAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTTCTGATCGAAGAATCCTCAGAAGAGGAGGAGGAGGAGG-AAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTTCTGATCGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGAT-GAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTTCTGATCGAAGAATCCTCAGAAGAGGAGGAGGAGGAGG-AAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGAT-GAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTTCTGATCGAAGAATCCTCAGAAGAGGAGGAGGAGGAGG-AAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTTCTGATCGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTTCTGATCGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTTCTGATCGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAAGAAGAAGTTGCGCCGAATGA-TCGTTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from CESAR GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAAGAAGAAGTTGCGCCGAA-TGATCGTTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTcAAACTGTCAAAGAAGAAGTTGCGCCGAAT-GATCGTTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAAGAAGAAGTTGCGCCGAATGA-TCGTTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAAGAAGAAGTTGCGCCGAATG-ATCGTTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAAGAAGAAGTTGCGCCGAATGATCGTTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAAGAAGAAGTTGCGCCGAATGATCGTTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAAGAAGAAGTTGCGCCGAATGATCGTTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAG-CGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGG-AGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from CESAR AAAAACCGAAAG-CGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGG-GAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Spaln_aa2Genome AAAAACCGAAAG-CGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGcCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGA-GCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Spaln_nt2Genome AAAAACCGAAAGC-GTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGC-GGGAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Pairagon AAAAACCGAAAG-CGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGG-AGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from GeneWise ------------AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagCTTGGGTCTAGAAAAACCGAAAGCCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGA-GCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagagAAGGAGGAAATGGAGACAGCTCACTCGCTCATCTCTGGGACAGTCAGCATCAG-GACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from CESAR agGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagagAAGGAGGAAATGGAGACAGCTCACTCGCTCATCTCTGGGACAGTCAGCATCA-GGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Spaln_aa2Genome AGGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTcACTCGCTCATCTCTGGGACAGTCAGCATCAGG-ACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTCACTCGCTCATCTCTGGGACAGTCAGCATCAG-GACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Pairagon AGGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTCACTCGCTCATCTCTGGGACAGTCAGCATCAG-GACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTCACTCGCTCATCTCTGGGACAGTCAGCATCAGGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTCACTCGCTCATCTCTGGGACAGTCAGCATCAGGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from GeneWise AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTCACTCGCTCATCTCTGGGACAGTCAGCATCAGGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTG-GGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGCGGCCCCAAGATCCCTCAGGCTTTGGAAA-GATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGggtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from CESAR ATGGATGATCCTTCTGTG-GGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGCGGCCCCAAGATCCCTCAGGCTTTGG-AAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGggtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGCGGCCCCAAGATCCCTCAGGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTG-GGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGCGGCCCCAAGATCCCTCAGGCTTTGG-AAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Pairagon ATGGATGATCCTTCTGTG-GGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGCGGCCCCAAGATCCCTCAGGCTTTGG-AAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGCGGCCCCAAGATCCCTCAGGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGCGGCCCCAAGATCCCTCAGGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGCGGCCCCAAGATCCCTCAGGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggggaatattgtgtagggacagtataagccttcctctcccccctcttcaggAAGACTCCGACTGTGGTGCTTCTGGCAGTGGGTCAATCAATCATTCAATGCTATTG-GAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGcggtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from CESAR gAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggggaatattgtgtagggacagtataagccttcctctcccccctcttcaggAAGACTCCGACTGTGGTGCTTCTGGCAGTGGGTCAATCAATCATTCAATGCTATT-GGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGcggtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCAGTGGGTCAATCAATCATTCAATGCTATTGGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCAGTGGGTCAATCAATCATTCAATGCTATTG-GAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Pairagon GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCAGTGGGTCAATCAATCATTCAATGCTATTG-GAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT--GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCAGTGGGTCAATCAATCATTCAATGCTATTGG---AATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Exonerate_coding2genome GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT--GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCAGTGGGTCAATCAATCATTCAATGCTATTGG---AATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from GeneWise --------------GTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCAGTGGGTCAATCAATCATTCAATGCTATTGG-AATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGC-CTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG gagtgtgtgggagcctccgcttctgctgtatgttcttcctttgtttccaggCCAGAACCTGGGAGCCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGC-CTGGAAACTCCAGGAGGACTTGCAGAGGgtgagttgagagcctggcaggggtgcacgggggtgcccctgacaagggct Alignment from CESAR gCCAGAACCCGGGAGC-CTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG gagtgtgtgggagcctccgcttctgctgtatgttcttcctttgtttccaggCCAGAACCTGGGAGCCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATG-CCTGGAAACTCCAGGAGGACTTGCAGAGGgtgagttgagagcctggcaggggtgcacgggggtgcccctgacaagggct Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGC-CTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG gagtgtgtgggagcctccgcttctgctgtatgttcttcctttgtttccagGCCAGAACCTGGGAGCcCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCC-TGGAAACTCCAGGAGGACTTGCAGAGGgtgagttgagagcctggcaggggtgcacgggggtgcccctgacaagggct Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCC-TGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG gagtgtgtgggagcctccgcttctgctgtatgttcttcctttgtttccagGCCAGAACCTGGGAGCCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGC-CTGGAAACTCCAGGAGGACTTGCAGAGGgtgagttgagagcctggcaggggtgcacgggggtgcccctgacaagggct Alignment from Pairagon GCCAGAACCCGGGAG-CCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG gagtgtgtgggagcctccgcttctgctgtatgttcttcctttgtttccagGCCAGAACCTGGGAGCCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGC-CTGGAAACTCCAGGAGGACTTGCAGAGGgtgagttgagagcctggcaggggtgcacgggggtgcccctgacaagggct Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG gagtgtgtgggagcctccgcttctgctgtatgttcttcctttgtttccagGCCAGAACCTGGGAGCCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCCTGGAAACTCCAGGAGGACTTGCAGAGGgtgagttgagagcctggcaggggtgcacgggggtgcccctgacaagggct Alignment from Exonerate_coding2genome GCCAGAACCCGGGAGC-CTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG gagtgtgtgggagcctccgcttctgctgtatgttcttcctttgtttccagGCCAGAACCTGGGAGCCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATG-CCTGGAAACTCCAGGAGGACTTGCAGAGGgtgagttgagagcctggcaggggtgcacgggggtgcccctgacaagggct Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG gagtgtgtgggagcctccgcttctgctgtatgttcttcctttgtttccagGCCAGAACCTGGGAGCCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCCTGGAAACTCCAGGAGGACTTGCAGAGGgtgagttgagagcctggcaggggtgcacgggggtgcccctgacaagggct #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagttATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGCTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAA-TCTGGAGTCACTGTCCCGGGAGggtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagttATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGCTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAA-TCTGGAGTCACTGTCCCGGGAGggtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGcTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATCTG-GAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGCTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAAT-CTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGCTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAA-TCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACA--ATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGCTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAAT---CTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGCTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATC-TGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGAT-GAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATT---------------------------------------------------------------------CT tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGCTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATCTGGAGTCACTGTCCCGGGAGGGTGAGTCTGCAAGGGCCCAGAGGGGACGAGCCAGGAGGATGTTTATTCCT #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTC-GTCTCTGCGGAATTCCATCAGTAAGagtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACT-CGTCTCTGCGGAATTCCATCAGTAAGagtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAA-CTCGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAA-CTCGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTC-CTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagcTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCCTCCTTGTCACCACTGCCAACCCATCTGCGC-TGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtgagtgcacagttctc Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTC-CTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagcTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCCTCCTTGTCACCACTGCCAACCCATCTG-CGCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctttttccttttttg Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCCTCCTTGTCACCACTGCCAACCCATCTGCGCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtgagtgcacagttctc Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCT-CCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCCTCCTTGTCACCACTGCCAACCCATCTGC-GCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtgagtgcacagttctc Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCT-CCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCCTCCTTGTCACCACTGCCAACCCATCTGC-GCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtgagtgcacagttctc Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCCTCCTTGTCACCACTGCCAACCCATCTGCGCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtgagtgcacagttctc Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCT---CCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGAC--CTCCCTCCTTGTCACCACTGCCAACCCATCTGCGCT-GATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtgagtgcacagttctc Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCCTCCTTGTCACCACTGCCAACCCATCTGCGCTGATACTGACAGAGAAACACCCCCTTCCCAGGTGAGTTGCAGAGGTGACATTGGATGCTACACCGTGAGTGCACAGTTCTC #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCG-GCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG cttggccccttctgcccctctttccctccatatcacttttttttttctaggGTGGCAGTGAGCCGAACCCAGGACACTCCTGCCTTCGGTCCTGCACTGCCAGAAGGTGGAGGCCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCACGCTGGGCATGCAAGGCAGTTCCACGCCATGGCTACATGCA-ACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTTGGCTTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGGCGCCGTTCAAACCCTCGGAGCCCAGGTGCGGAGCTACAGGCGGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCTGAAACGAGGGGTCCAGAGGACACTGAGGTGCCTTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGATGGCCGTGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAGGCAATCACACTGCGGCTTGATGGGGCTCCAGGACAAGCTGTGGGTGAAGTTGTGGCACGTCTGCAGgtgagttagtgtcaaaaactatggtccttggtttggtgcgtatcaggggc Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCG-GCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG cttggccccttctgcccctctttccctccatatcacttttttttttctaggGTGGCAGTGAGCCGAACCCAGGACACTCCTGCCTTCGGTCCTGCACTGCCAGAAGGTGGAGGCCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCACGCTGGGCATGCAAGGCAGTTCCACGCCATGGCTACATGC-AACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTTGGCTTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGGCGCCGTTCAAACCCTCGGAGCCCAGGTGCGGAGCTACAGGCGGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCTGAAACGAGGGGTCCAGAGGACACTGAGGTGCCTTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGATGGCCGTGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAGGCAATCACACTGCGGCTTGATGGGGCTCCAGGACAAGCTGTGGGTGAAGTTGTGGCACGTCTGCAGgtgagttagtgtcaaaaactatggtccttggtttggtgcgtatcaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG cttggccccttctgcccctctttccctccatatcacttttttttttctagGGTGGCAGTGAGCCGAACCCAGGACACTCCTGCCTTCGGTCCTGCACTGCCAGAAGGTGGAGGCCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCACGCTGGGCATGCAAGGCAGTTCCACGCCATGGCTACATGCAACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTTGGCTTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGGCGCCGTTCAAACCCTCGGAGCCCAGGTGCGGAGCTACAGGCGGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCTGAAACGAGGGGTCCAGAGGACACTGAGGTGCCTTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGATGGCCGTGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAGGCAATCACACTGCGGCTTGATGGGGCTCCAGGACAAGCTGTGGGTGAAGTTGTGGCACGTCTGCAGgtgagttagtgtcaaaaactatggtccttggtttggtgcgtatcaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCG-GCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG cttggccccttctgcccctctttccctccatatcacttttttttttctagGGTGGCAGTGAGCCGAACCCAGGACACTCCTGCCTTCGGTCCTGCACTGCCAGAAGGTGGAGGCCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCACGCTGGGCATGCAAGGCAGTTCCACGCCATGGCTACATGCA-ACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTTGGCTTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGGCGCCGTTCAAACCCTCGGAGCCCAGGTGCGGAGCTACAGGCGGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCTGAAACGAGGGGTCCAGAGGACACTGAGGTGCCTTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGATGGCCGTGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAGGCAATCACACTGCGGCTTGATGGGGCTCCAGGACAAGCTGTGGGTGAAGTTGTGGCACGTCTGCAGgtgagttagtgtcaaaaactatggtccttggtttggtgcgtatcaggggc Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCG-GCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG cttggccccttctgcccctctttccctccatatcacttttttttttctagGGTGGCAGTGAGCCGAACCCAGGACACTCCTGCCTTCGGTCCTGCACTGCCAGAAGGTGGAGGCCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCACGCTGGGCATGCAAGGCAGTTCCACGCCATGGCTACATGCA-ACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTTGGCTTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGGCGCCGTTCAAACCCTCGGAGCCCAGGTGCGGAGCTACAGGCGGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCTGAAACGAGGGGTCCAGAGGACACTGAGGTGCCTTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGATGGCCGTGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAGGCAATCACACTGCGGCTTGATGGGGCTCCAGGACAAGCTGTGGGTGAAGTTGTGGCACGTCTGCAGgtgagttagtgtcaaaaactatggtccttggtttggtgcgtatcaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCG-GCTGGTCATGCACGCCAGTTCCACGCCATGGCTACA--CGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG cttggccccttctgcccctctttccctccatatcacttttttttttctagGGTGGCAGTGAGCCGAACCCAGGACACTCCTGCCTTCGGTCCTGCACTGCCAGAAGGTGGAGGCCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCACGCTGGGCATGCAAGGCAGTTCCACGCCATGGCTACATGCAA---CGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTTGGCTTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGGCGCCGTTCAAACCCTCGGAGCCCAGGTGCGGAGCTACAGGCGGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCTGAAACGAGGGGTCCAGAGGACACTGAGGTGCCTTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGATGGCCGTGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAGGCAATCACACTGCGGCTTGATGGGGCTCCAGGACAAGCTGTGGGTGAAGTTGTGGCACGTCTGCAGgtgagttagtgtcaaaaactatggtccttggtttggtgcgtatcaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCG-GCTGGTCATGCACGCCAGTTCCACGCCATGGCTACA--CGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG cttggccccttctgcccctctttccctccatatcacttttttttttctagGGTGGCAGTGAGCCGAACCCAGGACACTCCTGCCTTCGGTCCTGCACTGCCAGAAGGTGGAGGCCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCACGCTGGGCATGCAAGGCAGTTCCACGCCATGGCTACATGCAA---CGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTTGGCTTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGGCGCCGTTCAAACCCTCGGAGCCCAGGTGCGGAGCTACAGGCGGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCTGAAACGAGGGGTCCAGAGGACACTGAGGTGCCTTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGATGGCCGTGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAGGCAATCACACTGCGGCTTGATGGGGCTCCAGGACAAGCTGTGGGTGAAGTTGTGGCACGTCTGCAGgtgagttagtgtcaaaaactatggtccttggtttggtgcgtatcaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG cttggccccttctgcccctctttccctccatatcacttttttttttctagGGTGGCAGTGAGCCGAACCCAGGACACTCCTGCCTTCGGTCCTGCACTGCCAGAAGGTGGAGGCCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCACGCTGGGCATGCAAGGCAGTTCCACGCCATGGCTACATGCAACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTTGGCTTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGGCGCCGTTCAAACCCTCGGAGCCCAGGTGCGGAGCTACAGGCGGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCTGAAACGAGGGGTCCAGAGGACACTGAGGTGCCTTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGATGGCCGTGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAGGCAATCACACTGCGGCTTGATGGGGCTCCAGGACAAGCTGTGGGTGAAGTTGTGGCACGTCTGCAGgtgagttagtgtcaaaaactatggtccttggtttggtgcgtatcaggggc #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACC-ATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag aggggggcacaacaaagatcacctcttcttctttctctcttcttttttagCTCCTGAGGAAGCGTCATATTGGCAATGATATTGTGACCCATCGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCT-CCCTACGACAATCTGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACaggtaagggctagggtgaactcaggtcatagggtgaactcaggtcatgggca Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACC-ATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag aggggggcacaacaaagatcacctcttcttctttctctcttcttttttagCTCCTGAGGAAGCGTCATATTGGCAATGATATTGTGACCCATCGTGTTCCAGGAGCCTGGCAGCAAGCCCTTC-TCCCTACGACAATCTGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACaggtaagggctagggtgaactcaggtcatagggtgaactcaggtcatgggca Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcacctcttcttctttctctcttcttttttagCTCCTGAGGAAGCGTCATATTGGCAATGATATTGTGACCCATCGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTCCCTACGACAATCTGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagggctagggtgaactcaggtcatagggtgaactcaggtcatgggca Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGAC-CATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcacctcttcttctttctctcttcttttttagCTCCTGAGGAAGCGTCATATTGGCAATGATATTGTGACCCATCGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCT-CCCTACGACAATCTGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagggctagggtgaactcaggtcatagggtgaactcaggtcatgggca Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGA-CCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcacctcttcttctttctctcttcttttttagCTCCTGAGGAAGCGTCATATTGGCAATGATATTGTGACCCATCGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCT-CCCTACGACAATCTGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagggctagggtgaactcaggtcatagggtgaactcaggtcatgggca Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcacctcttcttctttctctcttcttttttagCTCCTGAGGAAGCGTCATATTGGCAATGATATTGTGACCCATCGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTCCCTACGACAATCTGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagggctagggtgaactcaggtcatagggtgaactcaggtcatgggca Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcacctcttcttctttctctcttcttttttagCTCCTGAGGAAGCGTCATATTGGCAATGATATTGTGACCCATCGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTCCCTACGACAATCTGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagggctagggtgaactcaggtcatagggtgaactcaggtcatgggca Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcacctcttcttctttctctcttcttttttagCTCCTGAGGAAGCGTCATATTGGCAATGATATTGTGACCCATCGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTCCCTACGACAATCTGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagggctagggtgaactcaggtcatagggtgaactcaggtcatgggca #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagcgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTT-CACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagcgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGCATCATGTTTCACGTGTCCACGATGCTGC-CTTCACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTCACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTT-CACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTT-CACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTCACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTCACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG------CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG------CATCATGTTTCACGTGTCCACGATGCTGCCTTCACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGC-CTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagaaCATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGGCCACCCTAC-CAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatttacg Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGC-CTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagaaCATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGGCCACCCTA-CCAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaaaatgat Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGGCCACCCTACCAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatttacg Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGC-CTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGGCCACCCTAC-CAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatttacg Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAG-CCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGGCCACCCTAC-CAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatttacg Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGGCCACCCTACCAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatttacg Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAG---CCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTG--AGCCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGGCCACCCTACC-AGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatttacg Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACG----------------------------------------------------- gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGGCCACCCTACCAGCTACCGGGTCATTGTGCGGACCACGCAGGTGGGTAGGGATTACAGGCCACCACAGCCTATACTAAAGGTGAATTTACG #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCCTTC-CTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagtgTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATTGCCAAGTCACTGCAGGGAATTG-CTCCTCTTGCTCATCTGTGGCTggtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTC-CTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagtgTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATTGCCAAGTCACTGCAGGGAATT-GCTCCTCTTGCTCATCTGTGGCTggtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATTGCCAAGTCACTGCAGGGAATTGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTC-CTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATTGCCAAGTCACTGCAGGGAAT-TGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATGCCTT-CCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATTGCCAAGTCACTGCAGGGAATT-GCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATTGCCAAGTCACTGCAGGGAATTGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTC-CTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATTGCCAAGTCACTGCAGGGAATT-GCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATTGCCAAGTCACTGCAGGGAATTGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg #### Slc18a2_ID12938_6 --> 2 - 1 Original Alignment tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTT-GTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagtgGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTCGTGGGGAAGACAGCTCCTTTCCTGGTGCTTG-TGCATTGGTGCTCTTGGATGGAggtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from CESAR tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTT-GTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagtgGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTCGTGGGGAAGACAGCTCCTTTCCTGGTGCTTG-TGCATTGGTGCTCTTGGATGGAggtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Spaln_aa2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTCGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Spaln_nt2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAG-TTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTCGTGGGGAAGACAGCTCCTTTCCTGGTGCTTG-TGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Pairagon TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTT-GTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTCGTGGGGAAGACAGCTCCTTTCCTGGTGCTTG-TGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Exonerate_protein2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTCGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Exonerate_coding2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTG-TGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTCGTGGGGAAGACAGCTCCTTTCCTGGTGCTTG-TGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from GeneWise TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTCGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGG-GGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGCGGCGCCTTCACCTGCATCACCATCTTCTCTA-TGAACTCTTCCCCACTGTGATCaggtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGG-GGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGCGGCGCCTTCACCTGCATCACCATCTTCTCT-ATGAACTCTTCCCCACTGTGATCaggtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGCGGCGCCTTCACCTGCATCACCATCTTCTCTATGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCT-GGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGCGGCGCCTTCACCTGCATCACCATCTTCTCTA-TGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGG-GGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGCGGCGCCTTCACCTGCATCACCATCTTCTCTA-TGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGCGGCGCCTTCACCTGCATCACCATCTTCTCTATGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTG-GGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGCGGCGCCTTCACCTGCATCACCATCTTCTCT-ATGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGCGGCGCCTTCACCTGCATCACCATCTTCTCTATGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAA-GCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcagctggcccaggctaatctgtctaggccactgtccactgcccctaggTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAACGCCCTAGGAAGCAATATCTTCCTGCTCCAGTCAATTATTGGGA-TGTAGACTTCCCGGTGAAGACAGGCAGCCTGCTCCTGATCAGCCGCTTGGGCCAGCGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTGTCCAATATACTGGTGCCCCATggtaagatgccacctggctgagggtgagcataaggaggcaaaactgtggtg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAA-GCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcagctggcccaggctaatctgtctaggccactgtccactgcccctaggTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAACGCCCTAGGAAGCAATATCTTCCTGCTCCAGTCAATTATTGGGA-TGTAGACTTCCCGGTGAAGACAGGCAGCCTGCTCCTGATCAGCCGCTTGGGCCAGCGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTGTCCAATATACTGGTGCCCCATggtaagatgccacctggctgagggtgagcataaggaggcaaaactgtggtg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcagctggcccaggctaatctgtctaggccactgtccactgcccctagGTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAACGCCCTAGGAAGCAATATCTTCCTGCTCCAGTCAATTATTGGGATGTAGACTTCCCGGTGAAGACAGGCAGCCTGCTCCTGATCAGCCGCTTGGGCCAGCGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTGTCCAATATACTGGTGCCCCATGgtaagatgccacctggctgagggtgagcataaggaggcaaaactgtggtg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAA-GCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcagctggcccaggctaatctgtctaggccactgtccactgcccctagGTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAACGCCCTAGGAAGCAATATCTTCCTGCTCCAGTCAATTATTGGGA-TGTAGACTTCCCGGTGAAGACAGGCAGCCTGCTCCTGATCAGCCGCTTGGGCCAGCGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTGTCCAATATACTGGTGCCCCATGgtaagatgccacctggctgagggtgagcataaggaggcaaaactgtggtg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAA-GCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcagctggcccaggctaatctgtctaggccactgtccactgcccctagGTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAACGCCCTAGGAAGCAATATCTTCCTGCTCCAGTCAATTATTGGGA-TGTAGACTTCCCGGTGAAGACAGGCAGCCTGCTCCTGATCAGCCGCTTGGGCCAGCGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTGTCCAATATACTGGTGCCCCATGgtaagatgccacctggctgagggtgagcataaggaggcaaaactgtggtg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAA-GCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGG--ATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcagctggcccaggctaatctgtctaggccactgtccactgcccctagGTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAACGCCCTAGGAAGCAATATCTTCCTGCTCCAGTCAATTATTGGGAT---GTAGACTTCCCGGTGAAGACAGGCAGCCTGCTCCTGATCAGCCGCTTGGGCCAGCGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTGTCCAATATACTGGTGCCCCATGgtaagatgccacctggctgagggtgagcataaggaggcaaaactgtggtg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAA-GCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcagctggcccaggctaatctgtctaggccactgtccactgcccctagGTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAACGCCCTAGGAAGCAATATCTTCCTGCTCCAGTCAATTATT-GGGATGTAGACTTCCCGGTGAAGACAGGCAGCCTGCTCCTGATCAGCCGCTTGGGCCAGCGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTGTCCAATATACTGGTGCCCCATGgtaagatgccacctggctgagggtgagcataaggaggcaaaactgtggtg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcagctggcccaggctaatctgtctaggccactgtccactgcccctagGTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAACGCCCTAGGAAGCAATATCTTCCTGCTCCAGTCAATTATTGGGATGTAGACTTCCCGGTGAAGACAGGCAGCCTGCTCCTGATCAGCCGCTTGGGCCAGCGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTGTCCAATATACTGGTGCCCCATGgtaagatgccacctggctgagggtgagcataaggaggcaaaactgtggtg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAG-GAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg ctgggggtggacctataggtacttggtgcatgttcttttttttcttacagGTACTGCGGTCAGCTATGGAGGAGCGAACCAAGCAGGGACAAGGCTGGTGCCAGTC-TGGCACCTTACTCCACACACCCGGGCTGCGCCACCGAACCATCATCTCTATGCTGTGCttgtaggcgcctctacctaagactgtcagttacagggaagcctgagccaagc Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAG-GAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg ctgggggtggacctataggtacttggtgcatgttcttttttttcttacagGTACTGCGGTCAGCTATGGAGGAGCGAACCAAGCAGGGACAAGGCTGGTGCCAGTC-TGGCACCTTACTCCACACACCCGGGCTGCGCCACCGAACCATCATCTCTATGCTGTGCttgtaggcgcctctacctaagactgtcagttacagggaagcctgagccaagc Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggtggacctataggtacttggtgcatgttcttttttttcttacagGTACTGCGGTCAGCTATGGAGGAGCGAACCAAGCAGGGACAAGGCTGGTGCCAGTCTGGCACCTTACTCCACACACCCGGGCTGCGCCACCGAACCATCATCTCTATGCTGTGCTTgtaggcgcctctacctaagactgtcagttacagggaagcctgagccaagc Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAG-GAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggtggacctataggtacttggtgcatgttcttttttttcttacagGTACTGCGGTCAGCTATGGAGGAGCGAACCAAGCAGGGACAAGGCTGGTGCCAGTCT-GGCACCTTACTCCACACACCCGGGCTGCGCCACCGAACCATCATCTCTATGCTGTGCTTgtaggcgcctctacctaagactgtcagttacagggaagcctgagccaagc Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAG-GAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggtggacctataggtacttggtgcatgttcttttttttcttacagGTACTGCGGTCAGCTATGGAGGAGCGAACCAAGCAGGGACAAGGCTGGTGCCAGTCT-GGCACCTTACTCCACACACCCGGGCTGCGCCACCGAACCATCATCTCTATGCTGTGCTTgtaggcgcctctacctaagactgtcagttacagggaagcctgagccaagc Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggtggacctataggtacttggtgcatgttcttttttttcttacagGTACTGCGGTCAGCTATGGAGGAGCGAACCAAGCAGGGACAAGGCTGGTGCCAGTCTGGCACCTTACTCCACACACCCGGGCTGCGCCACCGAACCATCATCTCTATGCTGTGCTTgtaggcgcctctacctaagactgtcagttacagggaagcctgagccaagc Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggtggacctataggtacttggtgcatgttcttttttttcttacagGTACTGCGGTCAGCTATGGAGGAGCGAACCAAGCAGGGACAAGGCTGGTGCCAGTCTGGCACCTTACTCCACACACCCGGGCTGCGCCACCGAACCATCATCTCTATGCTGTGCTTgtaggcgcctctacctaagactgtcagttacagggaagcctgagccaagc Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggtggacctataggtacttggtgcatgttcttttttttcttacagGTACTGCGGTCAGCTATGGAGGAGCGAACCAAGCAGGGACAAGGCTGGTGCCAGTCTGGCACCTTACTCCACACACCCGGGCTGCGCCACCGAACCATCATCTCTATGCTGTGCTTgtaggcgcctctacctaagactgtcagttacagggaagcctgagccaagc #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGC-TATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCCTATCTTCTGGTGTCCGTGTCCGGCACAGCTG-TGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCtgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGC-TATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCCTATCTTCTGGTGTCCGTGTCCGGCACAGCTG-TGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCtgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCCTATCTTCTGGTGTCCGTGTCCGGCACAGCTGTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAG-CTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCCTATCTTCTGGTGTCCGTGTCCGGCACAGCTG-TGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAG-CTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCCTATCTTCTGGTGTCCGTGTCCGGCACAGCTG-TGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCCTATCTTCTGGTGTCCGTGTCCGGCACAGCTGTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCCTATCTTCTGGTGTCCGTGTCCGGCACAGCTGTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCCTATCTTCTGGTGTCCGTGTCCGGCACAGCTGTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATC-TACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTG-TTGTCTAGCTGACaggtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATC-TACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTT-GTTGTCTAGCTGACaggtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATC-TACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCcTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGT-TGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Spaln_nt2Genome AGTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCAT-CTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacAGTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTT-GTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCAT-CTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTT-GTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATG-AGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGCAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAG-TCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAaggtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATG-AGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGCAGTTCTCATCATTTTGGAGGCCTTATCCTGG-CAGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAaggtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGCAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATG-AGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGCAGTTCTCATCATTTTGGAGGCCTTATCCTGGCA-GTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATG-AGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGCAGTTCTCATCATTTTGGAGGCCTTATCCTGGCA-GTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGCAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAG---TTCTCATCATTTTGGAGGCCTTATCCTGGC--AGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATG--CAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAG---TCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGCAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCT-CATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCCATCGCGCCTTCCGCCAGCTGGCCCAGTCACTGTTCA-GGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from CESAR TGGAACCTTGTGTGCTCT-CATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCCATCGCGCCTTCCGCCAGCTGGCCCAGTCACTGTTC-AGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Spaln_aa2Genome gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagtggaaccttgtgtgctctccatcgcgccttccgccagctggcccagtcactgttcaggtgggagtgttactgggagccatgatgtttggctacctggcggacaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTC-ATCGG gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCCATCGCgccttccgccagctggcccagtcactgttcaggtgggagtgttactgggagccatgatgtttggctacctggcggacaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Pairagon TGGAACCTTGTGTGCTCT-CATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCCATCGCGCCTTCCGCCAGCTGGCCCAGTCACTGTTCA-GGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAGgtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Exonerate_protein2genome gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagtggaaccttgtgtgctctccatcgcgccttccgccagctggcccagtcactgttcaggtgggagtgttactgggagccatgatgtttggctacctggcggacaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Exonerate_coding2genome gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagtggaaccttgtgtgctctccatcgcgccttccgccagctggcccagtcactgttcaggtgggagtgttactgggagccatgatgtttggctacctggcggacaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from GeneWise gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagtggaaccttgtgtgctctccatcgcgccttccgccagctggcccagtcactgttcaggtgggagtgttactgggagccatgatgtttggctacctggcggacaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTC-ACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttaggTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACG-GAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTC-ACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttaggTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACG-GAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCT-CACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAAC-GGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCT-CACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAAC-GGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAA-AGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAACAGCACATACCAGGGCATTGTGGACTGTGTAG-CAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from CESAR GTGCGGTTACAGACCCAA-AGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAACAGCACATACCAGGGCATTGTGGACTGTGTA-GCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAA-AGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAcAGCACATACCAGGGCATTGTGGACTGTGTAGC-AAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAA-AGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAACAGCACATACCAGGGCATTGTGGACTGTGTAG-CAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Pairagon GTGCGGTTACAGACCCAA-AGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAACAGCACATACCAGGGCATTGTGGACTGTGTAG-CAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAACAGCACATACCAGGGCATTGTGGACTGTGTAGCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Exonerate_coding2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAACAGCACATACCAGGGCATTGTGGACTGTGTAGCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from GeneWise tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccaggtgcggttacagacccaacagcacataccagggcattgtggactgtgtagcaagacataccgccatgagtcagtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc #### Slc29a2_ID790_4 --> 1 - 1 Original Alignment cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAG-GTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagcATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGCGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGG-GTCTGTCTGGTTCATCAATtgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from CESAR cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAG-GTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagcATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGCGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATG-GGTCTGTCTGGTTCATCAATtgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Spaln_aa2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAG-GTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGcGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGG-TCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Spaln_nt2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAG-GTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGCGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGG-GTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Pairagon CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAG-GTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGCGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGG-GTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Exonerate_protein2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGCGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGGTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Exonerate_coding2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGT---GGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAG--CGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGG-TCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from GeneWise CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGCGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGGTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat #### Slc29a2_ID791_5 --> 2 - 1 Original Alignment ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAG-CTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCCTGGGTACCATGCCTTCTACCTACAGCACCC-CTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCagtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from CESAR ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAG-CTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCCTGGGTACCATGCCTTCTACCTACAGCACC-CCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCagtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Spaln_aa2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCCTGGGTACCATGCCTTCTACCTACAGCACCCCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Spaln_nt2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAG-CTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCCTGGGTACCATGCCTTCTACCTACAGCA-CCCCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Pairagon CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAG-CTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCCTGGGTACCATGCCTTCTACCTACAGCACCC-CTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Exonerate_protein2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCCTGGGTACCATGCCTTCTACCTACAGCACCCCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Exonerate_coding2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCCTGGGTACCATGCCTTCTACCTACAGCACCCCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from GeneWise CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCCTGGGTACCATGCCTTCTACCTACAGCACCCCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccaggtGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCA-CGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccaggtGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCC-ACGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTcCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCAC-GTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCA-CGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCA-CGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTC--TCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCAC---GTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCT-TGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCAC-GTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCT-GCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCAC-GTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTC-TTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gaagggaggatatggggactgggctgagcccctgtctcctctctgttcaggtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCT-CTACTTCCTGTGGgtggggttctctgggctaaaccagccagaagtttaggaagtaactgagga Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTC-TTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gaagggaggatatggggactgggctgagcccctgtctcctctctgttcaggtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCT-CTACTTCCTGTGGgtggggttctctgggctaaaccagccagaagtttaggaagtaactgagga Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTC-TTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gaagggaggatatggggactgggctgagcccctgtctcctctctgttcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCcTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTC-TACTTCCTGTGGgtggggttctctgggctaaaccagccagaagtttaggaagtaactgagga Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCT-CTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gaagggaggatatggggactgggctgagcccctgtctcctctctgttcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCT-CTACTTCCTGTGGgtggggttctctgggctaaaccagccagaagtttaggaagtaactgagga Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCT-CTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gaagggaggatatggggactgggctgagcccctgtctcctctctgttcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCT-CTACTTCCTGTGGgtggggttctctgggctaaaccagccagaagtttaggaagtaactgagga Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTC-TTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACC--TCCTACTTCCTGTGG gaagggaggatatggggactgggctgagcccctgtctcctctctgttcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTC---TACTTCCTGTGGgtggggttctctgggctaaaccagccagaagtttaggaagtaactgagga Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTC-TTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gaagggaggatatggggactgggctgagcccctgtctcctctctgttcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCT-ACTTCCTGTGGgtggggttctctgggctaaaccagccagaagtttaggaagtaactgagga Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gaagggaggatatggggactgggctgagcccctgtctcctctctgttcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCTACTTCCTGTGGgtggggttctctgggctaaaccagccagaagtttaggaagtaactgagga #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGCC-CAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGC-CCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGcTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCC-AACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGCC-CAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGCC-CAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTC-ACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCCACTCTTCCAGGGACTCCTGTTTTCAGCTACG-GGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTC-ACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCCACTCTTCCAGGGACTCCTGTTTTCAGCTACG-GGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTT-CACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCCACTCTTCCAGGGACTCCTGTTTTCAGCTAC-GGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTT-CACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCCACTCTTCCAGGGACTCCTGTTTTCAGCTAC-GGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAAC-GGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagcCACCTGGAGTTGAACCGGAATCAGATCTATCCCACCCGGAGCCT-CTCTCCCTACAGAAAGCTGCGCAGGatgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from CESAR cCGCCTGGAGTTGAAC-GGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagcCACCTGGAGTTGAACCGGAATCAGATCTATCCCACCCGGAG-CCTCTCTCCCTACAGAAAGCTGCGCAGGatgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACCGGAATCAGATCTATCCCACCCGGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAAC-GGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACCGGAATCAGATCTATCCCACCCGGAGCC-TCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Pairagon CCGCCTGGAGTTGAA-CGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACCGGAATCAGATCTATCCCACCCGGAGCC-TCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACCGGAATCAGATCTATCCCACCCGGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACCGGAATCAGATCTATCCCACCCGGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACCGGAATCAGATCTATCCCACCCGGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAAC-AACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccaggACCCTGAACAACCAACAACATCAGCACCATCCCTGTGTCCA-TTTCAATCATATGCCTAAGCTTCGGACTttgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from CESAR gACCCTGAACAAC-AACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccaggACCCTGAACAACCAACAACATCAGCACCATCCCTGTGTCC-ATTTCAATCATATGCCTAAGCTTCGGACTttgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACCAACAACATCAGCACCATCCCTGTGTCCATTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Spaln_nt2Genome GACCCTGAACAAC-AACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACCAACAACATCAGCACCATCCCTGTGTCCAT-TTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Pairagon GACCCTGAACAA-CAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACCAACAACATCAGCACCATCCCTGTGTCCA-TTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACCAACAACATCAGCACCATCCCTGTGTCCATTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Exonerate_coding2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACCAACAACATCAGCACCATCCCTGTGTCCATTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACCAACAACATCAGCACCATCCCTGTGTCCATTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTA-AAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTACAAGAAGTACAGCCACGTGAACAAAAAGGCTC-AGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTA-AAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTACAAGAAGTACAGCCACGTGAACAAAAAGGCT-CAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTACAAGAAGTACAGCCACGTGAACAAAAAGGCTCAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTA-AAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTACAAGAAGTACAGCCACGTGAACAAAAAGGCTC-AGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTA-AAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTACAAGAAGTACAGCCACGTGAACAAAAAGGCTC-AGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTACAAGAAGTACAGCCACGTGAACAAAAAGGCTCAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTACAAGAAGTACAGCCACGTGAACAAAAAGGCTCAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTACAAGAAGTACAGCCACGTGAACAAAAAGGCTCAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAGTTGGTACCTGGTGGCA-AGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from CESAR GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAGTTGGTACCTGGTGGCA-AGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTcGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAA-GCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAGTTGGTACCTGGTGGC-AAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Pairagon GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAGTTGGTACCTGGTGGC-AAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGGTG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGGTAgtaaaccctttatattcagtttttgctacagctttatcatcgtagac #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGACGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGA-GAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGACGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGA-GAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAcGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAGAAA-GTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGACGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCA-GGGGAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGACGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGACGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGACGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGACGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTG-TCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctgccctgccagccacattcctacccctctgacatcctggcttccctcagGGTGGAGAGGTGACACGTCCCTCTGAGGTGCTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATCCCCA-AACACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAggtgagtcagggtcagggaaggagtgagtcctcctcccacagggaaaaaca Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTG-TCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctgccctgccagccacattcctacccctctgacatcctggcttccctcagGGTGGAGAGGTGACACGTCCCTCTGAGGTGCTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATCCCCAAA-CACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAggtgagtcagggtcagggaaggagtgagtcctcctcccacagggaaaaaca Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTG-TCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctgccctgccagccacattcctacccctctgacatcctggcttccctcagGGTGGAGAGGTGACACGTCCCTCTGAGGTGcTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATCCCCAA-ACACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAGgtgagtcagggtcagggaaggagtgagtcctcctcccacagggaaaaaca Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTG-TCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctgccctgccagccacattcctacccctctgacatcctggcttccctcagGGTGGAGAGGTGACACGTCCCTCTGAGGTGCTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCAT-CCCCAAACACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAGgtgagtcagggtcagggaaggagtgagtcctcctcccacagggaaaaaca Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTG-TCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctgccctgccagccacattcctacccctctgacatcctggcttccctcagGGTGGAGAGGTGACACGTCCCTCTGAGGTGCTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATCCCCA-AACACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAGgtgagtcagggtcagggaaggagtgagtcctcctcccacagggaaaaaca Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTG-TCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCC--ACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctgccctgccagccacattcctacccctctgacatcctggcttccctcagGGTGGAGAGGTGACACGTCCCTCTGAGGTGCTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATCCCCAAACA---CCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAGgtgagtcagggtcagggaaggagtgagtcctcctcccacagggaaaaaca Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTG-TCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCC--ACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctgccctgccagccacattcctacccctctgacatcctggcttccctcagGGTGGAGAGGTGACACGTCCCTCTGAGGTGCTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATCCCCAAACA---CCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAGgtgagtcagggtcagggaaggagtgagtcctcctcccacagggaaaaaca Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctgccctgccagccacattcctacccctctgacatcctggcttccctcagGGTGGAGAGGTGACACGTCCCTCTGAGGTGCTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATCCCCAAACACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAGgtgagtcagggtcagggaaggagtgagtcctcctcccacagggaaaaaca #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAA-GTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAACGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCT-TGAGCGCCTCTCTGACTCCGCCAAACAAggttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAA-GTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAACGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC-TTGAGCGCCTCTCTGACTCCGCCAAACAAggttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAA-GTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAcGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTT-GAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAA-GTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAACGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTT-GAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAA-GTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAACGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTT-GAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAA-GTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC--TTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAACGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTT---GAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAA-GTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAACGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTG-AGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAA-GTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAACGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTT-GAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCT-ATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gggtggggcttggtgtgcacattcatctcatttttcttttccacttccaggcCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAG-CAACCAACTCAAGaggtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from CESAR gcCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gggtggggcttggtgtgcacattcatctcatttttcttttccacttccaggcCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GCAACCAACTCAAGaggtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCcCCCATTTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGC-AACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATAT-CCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAG-CAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Pairagon GCCTGGCAGACAACTATAT-CCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAG-CAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGCAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GCAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from GeneWise TG GGgtggggcttggtgtgcacattcatctcatttttcttttccacttccaggcctggcagacaactatatcccccatttctgctgcactgagcagtctcggaacccaggaagcaaccaactcaagaggtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAA-TACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAACTACCACACCCGAATCCGAGACACCTGCCAGAGGGCCG-CCGTGTTATGCACTCCCACAAGtgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAA-TACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAACTACCACACCCGAATCCGAGACACCTGCCAGAGGGCC-GCCGTGTTATGCACTCCCACAAGtgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAACTACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGCCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAA-TACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAACTACCACACCCGAATCCGAGACACCTGCCAGAGGGCCG-CCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAA-TACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAACTACCACACCCGAATCCGAGACACCTGCCAGAGGGCCG-CCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAA-TACCACACCCGAATCCGAGACACCTGCCAGAGGGCC--GACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAACTACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGC---CGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAA-TACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAACTACCACACCCGAATCCGAGACACCTGCCAGAGGGCC-GCCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTA-GAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTGC------------------------------------------------ actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAACTACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGC-CGTGTTATGCACTCCCACAAGTGTGAGGCAGATCTGAGGGTCCACACCATGGGTGGGGCTTGGTGTGCACAT #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCCTGAGAAGCATTGTCAGGTCTGCAGACG-AGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCCTGAGAAGCATTGTCAGGTCTGCAGACG-AGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCcCTGAGAAGCATTGTCAGGTCTGCAGACGAGTC-CTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAG---TCCTCATCACCGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCCTGAGAAGCATTGTCAGGTCTGCAGACG-AGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCT-CCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC---CGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCCTGAGAAGCATTGTCAGGTCTGCAGACG-AGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAA--GTCCTCATCACCGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCCTGAGAAGCATTGTCAGGTCTGCAGACGAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAA--GTCCTCATCACCGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCCTGAGAAGCATTGTCAGGTCTGCAGACGAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG------------ acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCCTGAGAAGCATTGTCAGGTCTGCAGACGAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGGCAAGTCTTTCTgtgggaggagacccatgaacagagcgggctcccaggga #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCAT-GAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctaggGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATCGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTC-GGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCAT-GAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctaggGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATCGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTC-GGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCAT-GAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATcGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCG-GACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCAT-GAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATCGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTC-GGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCAT-GAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATCGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTC-GGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCAT-GAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGT--CGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATCGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCG---GACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGA---AGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCAT--CGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCG-GACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCAT-GAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATCGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCG-GACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAG-GCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGCGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTG-GGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAgcgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAG-GCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGCGCTTCAAGGGAAAAGTTGCAAAAGTTGGGT-GGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAgcgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGCGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAG-GCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGCGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTG-GGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAG-GCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGCGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTG-GGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGCGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGCGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGCGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTC-AATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagaTACCCCAATGTCCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGC-GGCCTTTAATGCCATTGTGCACAAACACcggtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from CESAR aTACCCCAATGTC-AATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagaTACCCCAATGTCCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGG-CGGCCTTTAATGCCATTGTGCACAAACACcggtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Spaln_aa2Genome AC---CCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCG-GCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Spaln_nt2Genome ATACCCCAATGTC-AATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCCAATGTGCACAACTTTACCACCAGTTGGAGAGAT-GGGCGGCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Pairagon ATACCCCAATGT-CAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGC-GGCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Exonerate_protein2genome ATACCCCAATGTC-AATGTGCACAACTTTACCACCAGTTGGAGAGATGGG--CTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCG---GCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Exonerate_coding2genome ATACCCCAATGTC-AATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCGG-CCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from GeneWise ATACCCCAAT-GTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCG-GCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag #### Sptbn2_ID626_21 --> 0 - 0 Original Alignment TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCT-CTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacagttcctctctgtggctctattgtgtctctcttttcccactagTTGTGGGTGACTGAGCGGCTTCCTATGGCCAGCTCTCCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGC-TCTCATGAAAAAAAACCAGgtaaggccaagggcaagggtgcaaacagagttcacaagagcattttcata Alignment from CESAR TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCT-CTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacagttcctctctgtggctctattgtgtctctcttttcccactagTTGTGGGTGACTGAGCGGCTTCCTATGGCCAGCTCTCCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGC-TCTCATGAAAAAAAACCAGgtaaggccaagggcaagggtgcaaacagagttcacaagagcattttcata Alignment from Spaln_aa2Genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCT-CTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacagttcctctctgtggctctattgtgtctctcttttcccactagTTGTGGGTGACTGAGCGGCTTCCTATGGCCAGCTCTcCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCT-CTCATGAAAAAAAACCAGgtaaggccaagggcaagggtgcaaacagagttcacaagagcattttcata Alignment from Spaln_nt2Genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCT-CTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacagttcctctctgtggctctattgtgtctctcttttcccactagTTGTGGGTGACTGAGCGGCTTCCTATGGCCAGCTCTCCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCT-CTCATGAAAAAAAACCAGgtaaggccaagggcaagggtgcaaacagagttcacaagagcattttcata Alignment from Pairagon TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCT-CTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacagttcctctctgtggctctattgtgtctctcttttcccactagTTGTGGGTGACTGAGCGGCTTCCTATGGCCAGCTCTCCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGC-TCTCATGAAAAAAAACCAGgtaaggccaagggcaagggtgcaaacagagttcacaagagcattttcata Alignment from Exonerate_protein2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacagttcctctctgtggctctattgtgtctctcttttcccactagTTGTGGGTGACTGAGCGGCTTCCTATGGCCAGCTCTCCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTCTCATGAAAAAAAACCAGgtaaggccaagggcaagggtgcaaacagagttcacaagagcattttcata Alignment from Exonerate_coding2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacagttcctctctgtggctctattgtgtctctcttttcccactagTTGTGGGTGACTGAGCGGCTTCCTATGGCCAGCTCTCCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTCTCATGAAAAAAAACCAGgtaaggccaagggcaagggtgcaaacagagttcacaagagcattttcata Alignment from GeneWise TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacagttcctctctgtggctctattgtgtctctcttttcccactagTTGTGGGTGACTGAGCGGCTTCCTATGGCCAGCTCTCCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTCTCATGAAAAAAAACCAGgtaaggccaagggcaagggtgcaaacagagttcacaagagcattttcata #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCC-CGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTC-GGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCC-CGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACT-CGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAG-CCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGcCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCGGGG-ACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAG-CCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTC-GGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAG-CCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTC-GGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAG-CTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagcACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGG-GCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAG-CTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagcACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCCTGGCAGGAGAGCGGCGCGAGCGCCTGCAG-GGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAG-CTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGG-GCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Pairagon CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAG-CTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGG-GCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAG---CACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAG---CCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTA-GTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagaGATGTGTCCTCTGCAGATTTACGTCATCAAGAACCAACAAGGAATCAAAGCAG-GATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from CESAR gGATGTGTCCTCTGCAGATTTA-GTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagaGATGTGTCCTCTGCAGATTTACGTCATCAAGAACCAACAAGGAATCAAAGCA-GGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTACGTCATCAAGAACCAACAAGGAATCAAAGCAGGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGA-TTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTACGTCATCAAGAACCAACAAGGAATCAAAGCAG-GATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Pairagon GGATGTGTCCTCTGCAGATTTA-GTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTACGTCATCAAGAACCAACAAGGAATCAAAGCAG-GATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTACGTCATCAAGAACCAACAAGGAATCAAAGCAGGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTACGTCATCAAGAACCAACAAGGAATCAAAGCAGGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from GeneWise -GATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTACGTCATCAAGAACCAACAAGGAATCAAAGCAGGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCAC-GGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCA-CGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATcCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACG-GATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTC-AGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCAC-GGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCT-TTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCAC-GGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGG-GAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg cagcttttcaactccccctgattctcgcatcctcttcctctcccgatcagCTGGAAGAGCGGGAAAATGAACGGAAAAGGAAGAGGCGAGGAGGAGGAACGGAGGAAACAACCTCCTA-TTCAGAGCCTATGGCTAGTCAGCCAGAAGGGAGTCTGGTGGATGGCCAGAGAGTTCCTGACACTGCTTGGGATgggtataagcttgatacctgggccaggatgctaaagctaagcccaagccagc Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGG-GAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg cagcttttcaactccccctgattctcgcatcctcttcctctcccgatcagCTGGAAGAGCGGGAAAATGAACGGAAAAGGAAGAGGCGAGGAGGAGGAACGGAGGAAACAACCTCCT-ATTCAGAGCCTATGGCTAGTCAGCCAGAAGGGAGTCTGGTGGATGGCCAGAGAGTTCCTGACACTGCTTGGGATgggtataagcttgatacctgggccaggatgctaaagctaagcccaagccagc Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cagcttttcaactccccctgattctcgcatcctcttcctctcccgatcagCTGGAAGAGCGGGAAAATGAACGGAAAAGGAAGAGGCGAGGAGGAGGAACGGAGGAAACAACCTCCTATTCAGAGCCTATGGCTAGTCAGCCAGAAGGGAGTCTGGTGGATGGCCAGAGAGTTCCTGACACTGCTTGGGATGGgtataagcttgatacctgggccaggatgctaaagctaagcccaagccagc Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGG-GAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cagcttttcaactccccctgattctcgcatcctcttcctctcccgatcagCTGGAAGAGCGGGAAAATGAACGGAAAAGGAAGAGGCGAGGAGGAGGAACGGAGGAAACAACCTCCTA-TTCAGAGCCTATGGCTAGTCAGCCAGAAGGGAGTCTGGTGGATGGCCAGAGAGTTCCTGACACTGCTTGGGATGGgtataagcttgatacctgggccaggatgctaaagctaagcccaagccagc Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGG-GAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cagcttttcaactccccctgattctcgcatcctcttcctctcccgatcagCTGGAAGAGCGGGAAAATGAACGGAAAAGGAAGAGGCGAGGAGGAGGAACGGAGGAAACAACCTCCTA-TTCAGAGCCTATGGCTAGTCAGCCAGAAGGGAGTCTGGTGGATGGCCAGAGAGTTCCTGACACTGCTTGGGATGGgtataagcttgatacctgggccaggatgctaaagctaagcccaagccagc Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cagcttttcaactccccctgattctcgcatcctcttcctctcccgatcagCTGGAAGAGCGGGAAAATGAACGGAAAAGGAAGAGGCGAGGAGGAGGAACGGAGGAAACAACCTCCTATTCAGAGCCTATGGCTAGTCAGCCAGAAGGGAGTCTGGTGGATGGCCAGAGAGTTCCTGACACTGCTTGGGATGGgtataagcttgatacctgggccaggatgctaaagctaagcccaagccagc Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cagcttttcaactccccctgattctcgcatcctcttcctctcccgatcagCTGGAAGAGCGGGAAAATGAACGGAAAAGGAAGAGGCGAGGAGGAGGAACGGAGGAAACAACCTCCTATTCAGAGCCTATGGCTAGTCAGCCAGAAGGGAGTCTGGTGGATGGCCAGAGAGTTCCTGACACTGCTTGGGATGGgtataagcttgatacctgggccaggatgctaaagctaagcccaagccagc Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cagcttttcaactccccctgattctcgcatcctcttcctctcccgatcagCTGGAAGAGCGGGAAAATGAACGGAAAAGGAAGAGGCGAGGAGGAGGAACGGAGGAAACAACCTCCTATTCAGAGCCTATGGCTAGTCAGCCAGAAGGGAGTCTGGTGGATGGCCAGAGAGTTCCTGACACTGCTTGGGATGGgtataagcttgatacctgggccaggatgctaaagctaagcccaagccagc #### Sptbn2_ID636_31 --> 1 - 0 Original Alignment gACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTA-TGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from CESAR gACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTT-ATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Spaln_aa2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggactcagT------CAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAT-GGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Spaln_nt2Genome GACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTT-ATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Pairagon GACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTT-ATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Exonerate_protein2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Exonerate_coding2genome GACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTT-ATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from GeneWise GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAG-ATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGCATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCA-CAAGAAAGCTGCCAACaggtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAG-ATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGCATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCT-TCACAAGAAAGCTGCCAACaggtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAG-ATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAA---GCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGcATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCACAAGAAAGCTGCCAACAGGTATgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAG-ATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGCATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCA-CAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAG-ATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGCATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTC-ACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAG-ATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACA gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGCATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAG-ATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGCATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTC-ACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAA-CAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAGG-- gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGCATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCACAAGAAAGCTGCCAACAGGTATgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTA-GCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagaGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTACGCCTATGCCATGAAACAGTATGGCTGGGACC-GGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCaggtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTA-GCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagaGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTACGCCTATGCCATGAAACAGTATGGCTGGGAC-CGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCaggtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTACGCCTATGCCATGAAACAGTATGGCTGGGACCGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTA-GCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTACGCCTATGCCATGAAACAGTATGGCT-GGGACCGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTA-GCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTACGCCTATGCCATGAAACAGTATGGCTGGGACC-GGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTACGCCTATGCCATGAAACAGTATGGCTGGGACCGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGC---CTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTA--CGCCTATGCCATGAAACAGTATGGCTGGGACCG-GAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTACGCCTATGCCATGAAACAGTATGGCTGGGACCGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCT ttcacaatggggggcctattcttttgccttctgtaatttccctgacacagATCCGTCAGGCCCTGGAGCTGCGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGTTGCTTCTAATGGCCCAGCAAG-CCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGgtaaggggccaacaaaaatcttttgttcttagGGCTCTGAGTGGAATGCT Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCT ttcacaatggggggcctattcttttgccttctgtaatttccctgacacagATCCGTCAGGCCCTGGAGCTGCGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGTTGCTTCTAATGGCCCAGCAA-GCCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGgtaaggggcccccacttccactgccttcccagGGCTCTGAGTGGAATGCT Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCT ttcacaatggggggcctattcttttgccttctgtaatttccctgacacagATCCGTCAGGCCCTGGAGCTGCGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGTTGCTTCTAATGGCCCAGCAAGCCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGgtaaggggccaacaaaaatcttttgttcttagGGCTCTGAGTGGAATGCT Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTT--------------------------------GGGCTCTGAGTGGAATGCT ttcacaatggggggcctattcttttgccttctgtaatttccctgacacagATCCGTCAGGCCCTGGAGCTGCGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGTTGCTTCTAATGGCCCAGCAAG-CCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGGTAAGGGGCCAACAAAAATCTTTTGTTCTTAGGGCTCTGAGTGGAATGCT Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCT ttcacaatggggggcctattcttttgccttctgtaatttccctgacacagATCCGTCAGGCCCTGGAGCTGCGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGTTGCTTCTAATGGCCCAGCAAG-CCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGgtaaggggccaacaaaaatcttttgttcttagGGCTCTGAGTGGAATGCT Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCT ttcacaatggggggcctattcttttgccttctgtaatttccctgacacagATCCGTCAGGCCCTGGAGCTGCGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGTTGCTTCTAATGGCCCAGCAAGCCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGgtaaggggccaacaaaaatcttttgttcttagGGCTCTGAGTGGAATGCT Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCT ttcacaatggggggcctattcttttgccttctgtaatttccctgacacagATCCGTCAGGCCCTGGAGCTGCGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGTTGCTTCTAATGGCCCAGCAAGCCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGgtaaggggccaacaaaaatcttttgttcttagGGCTCTGAGTGGAATGCT Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCT ttcacaatggggggcctattcttttgccttctgtaatttccctgacacagATCCGTCAGGCCCTGGAGCTGCGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGTTGCTTCTAATGGCCCAGCAAGCCGGGCCTCTCGCATCTTCCCCCACCTCTACTTGgtaaggggccaacaaaaatcttttgttcttagGGCTCTGAGTGGAATGCT #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTT-GTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCGGTAGTGGCCTTCGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTA-TTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAcagtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTT-GTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCGGTAGTGGCCTTCGTGCCTGGTGGCAGTGCCCTTGCCTGGGCT-ATTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAcagtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCGGTAGTGGCCTTCGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTATTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTT-GTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCGGTAGTGGCCTTCGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTA-TTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTT-GTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCGGTAGTGGCCTTCGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTA-TTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCGGTAGTGGCCTTCGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTATTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGT---GCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCGGTAGTGGCCTT--CGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTAT-TACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCGGTAGTGGCCTTCGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTATTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagaGGCTTAAGTGTGCACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCT-TATCCAGACCATGtggtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from CESAR gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagaGGCTTAAGTGTGCACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTC-TTATCCAGACCATGtggtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Spaln_aa2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGcACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTT-ATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Spaln_nt2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCT-TATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Pairagon GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCT-TATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Exonerate_protein2genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTC--TCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTT---ATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Exonerate_coding2genome GGGCTTCAGTGTGAC---ATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTG--CACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTT-ATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from GeneWise atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagaggcttaagtgtgcacatctggtggtcaaagtcgaatcttcaagcctgtcttatccagaccatgtggtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGAC-TATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagtcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACCTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACC-GGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGAC-TATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagtcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACCTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGAC-CGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGAC-TATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACcTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCG-GACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGA-CTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACCTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACC-GGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGA-CTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACCTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACC-GGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACCTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTA---TACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGAC--CTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCG-GACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACCTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAACACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCA-TGAATTTACCCTTATGGCCaggtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from CESAR AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAACACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGC-ATGAATTTACCCTTATGGCCaggtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Spaln_aa2Genome AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAcACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAT-GAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Spaln_nt2Genome AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAACACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCA-TGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Pairagon AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAACACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCA-TGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Exonerate_protein2genome AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAACACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCATGAATTTACCCTTATGGCCAGGtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAACACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCATGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from GeneWise agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagaatggaatccaacacaagcaaaccggctctgcacgcagcccgacagtgcatgaatttacccttatggccaggtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAG-AGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg agacccactttcccagggctcaggagcttgtccttttcccttcgttccagAATCTGAAACAGCAACAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGT-AGCCCTGCCTCTTGCCCCCAACAACCTTggtgagacagcagtagcactatgcctaggggataagttcttctgggtttgg Alignment from CESAR AATCTGAAACAGCAG-AGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg agacccactttcccagggctcaggagcttgtccttttcccttcgttccagAATCTGAAACAGCAACAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTG-TAGCCCTGCCTCTTGCCCCCAACAACCTTggtgagacagcagtagcactatgcctaggggataagttcttctgggtttgg Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG agacccactttcccagggctcaggagcttgtccttttcccttcgttccagAATCTGAAACAGCAACAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTAGCCCTGCCTCTTGCCCCCAACAACCTTGgtgagacagcagtagcactatgcctaggggataagttcttctgggtttgg Alignment from Spaln_nt2Genome AATCTGAAACAGCAG-AGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG agacccactttcccagggctcaggagcttgtccttttcccttcgttccagAATCTGAAACAGCAACAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGT-AGCCCTGCCTCTTGCCCCCAACAACCTTGgtgagacagcagtagcactatgcctaggggataagttcttctgggtttgg Alignment from Pairagon AATCTGAAACAGCAG-AGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG agacccactttcccagggctcaggagcttgtccttttcccttcgttccagAATCTGAAACAGCAACAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGT-AGCCCTGCCTCTTGCCCCCAACAACCTTGgtgagacagcagtagcactatgcctaggggataagttcttctgggtttgg Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG agacccactttcccagggctcaggagcttgtccttttcccttcgttccagAATCTGAAACAGCAACAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTAGCCCTGCCTCTTGCCCCCAACAACCTTGgtgagacagcagtagcactatgcctaggggataagttcttctgggtttgg Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG agacccactttcccagggctcaggagcttgtccttttcccttcgttccagAATCTGAAACAGCAACAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTAGCCCTGCCTCTTGCCCCCAACAACCTTGgtgagacagcagtagcactatgcctaggggataagttcttctgggtttgg Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG agacccactttcccagggctcaggagcttgtccttttcccttcgttccagAATCTGAAACAGCAACAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTAGCCCTGCCTCTTGCCCCCAACAACCTTGgtgagacagcagtagcactatgcctaggggataagttcttctgggtttgg #### Sufu_ID9897_5 --> 0 - 2 Original Alignment ATTGTTGGTGTCTGCACTGAGGAGTTACATTCA-GCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCACGCACAACAGTGGAATGGACAGGGCATCCTGGAAC-ACTACGGACAGTGCCCatgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from CESAR ATTGTTGGTGTCTGCACTGAGGAGTTACATTCA-GCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCACGCACAACAGTGGAATGGACAGGGCATCCTGGAA-CACTACGGACAGTGCCCatgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Spaln_aa2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCA-GCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAcGCACAACAGTGGAATGGACAGGGCATCCTGGAACA-CTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Spaln_nt2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCA-GCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCACGCACAACAGTGGAATGGACAGGGCATCCTGGAAC-ACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Pairagon ATTGTTGGTGTCTGCACTGAGGAGTTACATTCA-GCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCACGCACAACAGTGGAATGGACAGGGCATCCTGGAAC-ACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Exonerate_protein2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCACGCACAACAGTGGAATGGACAGGGCATCCTGGAACACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Exonerate_coding2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCACGCACAACAGTGGAATGGACAGGGCATCCTGGAACACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from GeneWise ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCACGCACAACAGTGGAATGGACAGGGCATCCTGGAACACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATC-CAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggaaagcagaaaataacctcaaatcttaactctgctttcctcctagGTCCTGTACATCCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGA-GGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtaaggtaagggcagggttcagaggagggtacccaaatgatttgttttca Alignment from CESAR GTCCTGTACATC-CAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggaaagcagaaaataacctcaaatcttaactctgctttcctcctagGTCCTGTACATCCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTG-AGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtaaggtaagggcagggttcagaggagggtacccaaatgatttgttttca Alignment from Spaln_aa2Genome GTCCTGTACATC-CAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggaaagcagaaaataacctcaaatcttaactctgctttcctcctagGTCCTGTACATCcCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGAGGGG-AAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtaaggtaagggcagggttcagaggagggtacccaaatgatttgttttca Alignment from Spaln_nt2Genome GTCCTGTACATCC-AGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggaaagcagaaaataacctcaaatcttaactctgctttcctcctagGTCCTGTACATCCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGAG-GGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtaaggtaagggcagggttcagaggagggtacccaaatgatttgttttca Alignment from Pairagon GTCCTGTACAT-CCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggaaagcagaaaataacctcaaatcttaactctgctttcctcctagGTCCTGTACATCCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGA-GGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtaaggtaagggcagggttcagaggagggtacccaaatgatttgttttca Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggaaagcagaaaataacctcaaatcttaactctgctttcctcctagGTCCTGTACATCCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGAGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtaaggtaagggcagggttcagaggagggtacccaaatgatttgttttca Alignment from Exonerate_coding2genome GTCCTGTACAT-CCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggaaagcagaaaataacctcaaatcttaactctgctttcctcctagGTCCTGTACATCCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGAG-GGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtaaggtaagggcagggttcagaggagggtacccaaatgatttgttttca Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggaaagcagaaaataacctcaaatcttaactctgctttcctcctagGTCCTGTACATCCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGAGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtaaggtaagggcagggttcagaggagggtacccaaatgatttgttttca #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCAC-TCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACCTCTGTGGACCTCCAGAGCGAGAACCCCT-GGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCAC-TCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACCTCTGTGGACCTCCAGAGCGAGAACCCCT-GGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACCTCTGTGGACCTCCAGAGCGAGAACCCCTGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCA-CTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACCTCTGTGGACCTCCAGAGCGAGAACCCCTGG-ACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCA-CTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACCTCTGTGGACCTCCAGAGCGAGAACCCCT-GGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACCTCTGTGGACCTCCAGAGCGAGAACCCCTGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCA-CTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACCTCTGTGGACCTCCAGAGCGAGAACCCCTG-GACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACCTCTGTGGACCTCCAGAGCGAGAACCCCTGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATG-ATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGCATCAAGGTGCACACATTCCCACTCTTTGCCA-TAGGCCCATGTACCTGGCCATGaggtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from CESAR gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATG-ATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGCATCAAGGTGCACACATTCCCACTCTTTGCCA-TAGGCCCATGTACCTGGCCATGaggtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGCATCAAGGTGCACACATTCCCACTCTTTGCCATAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATG-ATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGCATCAAGGTGCACACATTCCCACTCTTTGCCAT-AGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATG-ATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGCATCAAGGTGCACACATTCCCACTCTTTGCCA-TAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGCATCAAGGTGCACACATTCCCACTCTTTGCCATAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCAT-GATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGCATCAAGGTGCACACATTCCCACTCTTTGCCAT-AGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGCATCAAGGTGCACACATTCCCACTCTTTGCCATAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACC-TGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt gggcattggctcatggggacctgctgacatcttctatttttgtacttcagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCCTGCCTGACATGCCGCATGGATGTCCTGCGGGCATCAT-GCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATtgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACC-TGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt gggcattggctcatggggacctgctgacatcttctatttttgtacttcagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCCTGCCTGACATGCCGCATGGATGTCCTGCGGGCAT-CATGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATtgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCCTGCCTGACATGCCGCATGGATGTCCTGCGGGCATCATGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGA-CCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCCTGCCTGACATGCCGCATGGATGTCCTGCGGGCATC-ATGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGA-CCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCCTGCCTGACATGCCGCATGGATGTCCTGCGGGCATCA-TGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCCTGCCTGACATGCCGCATGGATGTCCTGCGGGCATCATGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGAC-CTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCCTGCCTGACATGCCGCATGGATGTCCTGCGGGCATC-ATGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCCTGCCTGACATGCCGCATGGATGTCCTGCGGGCATCATGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCT-GCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg tggcagttggatctggagaccaggagatcctctctgctgctcccctttagctGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTCGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGG-TATGCCTCTGCCTCCGCCTTTTggtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCT-GCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg tggcagttggatctggagaccaggagatcctctctgctgctcccctttagctGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTCGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGA-TGGTATGCCTCTGCCTCCGCCTTTTggtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTCGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCT-GCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTCGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGAT-GGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCT-GCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTCGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGAT-GGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTCGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTCGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTCGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAG-GCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcaggCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGCGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTC-TGAAGCAGAAAAGCCTCCTggtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAG-GCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcaggCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGCGCTCCAACCCCATCTCCAGGAGCATCCCCACCAA-TTCTGAAGCAGAAAAGCCTCCTggtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAG-GCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGcGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCT-GAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAG-GCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGCGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATT-CTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAG-GCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGCGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATT-CTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGCGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGCGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGCGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGC-TTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACT-TGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from CESAR GAGGCCTTCTGGTGC-TTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTAC-TTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGC-TTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCAC---ATGGAG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCcTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTTGGGCCCCACATGGTTAGAGgctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTG-CTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACT-TGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Pairagon GAGGCCTTCTGGTG-CTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACT-TGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGC-TTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTTGGGCCCCACATGGttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGC-TTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTAC-TTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGA-TACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcaggCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGACTACTGCCAGGCTCAGGGACCTGTAGCCGCTGTGCTGC-CATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGA-TACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcaggCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGACTACTGCCAGGCTCAGGGACCTGTAGCCGCTGTGCTG-CCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGA-TACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGAcTACTGCCAGGCTCAGGGACCTGTAGCCGCTGTGCTGCC-ATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCA-GGGATACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGACTACTGCCAGGCTCAGGGACCTGTAGCCGCTGTGCTGC-CATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGA-TACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGACTACTGCCAGGCTCAGGGACCTGTAGCCGCTGTGCTGC-CATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGACTACTGCCAGGCTCAGGGACCTGTAGCCGCTGTGCTGCCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGA-TACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGACTACTGCCAGGCTCAGGGACCTGTAGCCGCTGTGCTG-CCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGACTACTGCCAGGCTCAGGGACCTGTAGCCGCTGTGCTGCCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACC-ATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGC-CGAGATGTTTGTGTCACCTCAGGGACACgggtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from CESAR GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACC-ATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTG-CCGAGATGTTTGTGTCACCTCAGGGACACgggtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Spaln_aa2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCCGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Spaln_nt2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACC-ATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGC-CGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Pairagon GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGA-CCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGC-CGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Exonerate_protein2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCCGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Exonerate_coding2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGAC---CATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAG--GCCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCC-GAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from GeneWise GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCCGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGA-GAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGA-GAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCcCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAG-AACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCC-GGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAG-AGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTG-CCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAG-AGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAG--AAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAG---AACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAG--AAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAG---AACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGT-GCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAG-AACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca #### Tbx10_ID260_5 --> 0 - 0 Original Alignment ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCAC-GTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATCGTGGTTTTTGTAGACCCATGCAAGGACACTGCTC-CTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from CESAR ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCAC-GTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATCGTGGTTTTTGTAGACCCATGCAAGGACACTGCT-CCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Spaln_aa2Genome ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATCGTGGTTTTTGTAGACCCATGCAAGGACACTGCTCCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Spaln_nt2Genome ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCA-CGTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATCGTGGTTTTTGTAGACCCATGCAAGGACACTGCTC-CTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Pairagon ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCA-CGTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATCGTGGTTTTTGTAGACCCATGCAAGGACACTGCTC-CTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Exonerate_protein2genome ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATCGTGGTTTTTGTAGACCCATGCAAGGACACTGCTCCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Exonerate_coding2genome ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATCGTGGTTTTTGTAGACCCATGCAAGGACACTGCTCCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from GeneWise ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATCGTGGTTTTTGTAGACCCATGCAAGGACACTGCTCCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag #### Tbx10_ID262_7 --> 1 - 1 Original Alignment gCCTGTGACCCCCCGG-CCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAg tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccaggCCTGTGACCCCCCGGCCCACAGCTCAGCATCCCTGCCCGGAGTC-TAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCCGAACGAGAGAAAggtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from CESAR gCCTGTGACCCCCCGG-CCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAg tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccaggCCTGTGACCCCCCGGCCCACAGCTCAGCATCCCTGCCCGGAGT-CTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCCGAACGAGAGAAAggtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Spaln_aa2Genome GCCTGTGACCCCCCGG-CCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGcCCACAGCTCAGCATCCCTGCCCGGAGTCT-AGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Spaln_nt2Genome GCCTGTGACCCCCCGG-CCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCCACAGCTCAGCATCCCTGCCCGGAGTC-TAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Pairagon GCCTGTGACCCCCCGG-CCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCCACAGCTCAGCATCCCTGCCCGGAGTC-TAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Exonerate_protein2genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCCACAGCTCAGCATCCCTGCCCGGAGTCTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Exonerate_coding2genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCCACAGCTCAGCATCCCTGCCCGGAGTCTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from GeneWise GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCCACAGCTCAGCATCCCTGCCCGGAGTCTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCT-GTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagagCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTCGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTC-GTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATtggtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCT-GTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagagCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTCGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATT-CGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATtggtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTCGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCT-GTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTCGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTC-GTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCT-GTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTCGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTC-GTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTCGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGT---GTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCT--CGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCG-TTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTCGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATT-GAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc aggaagggctgccagctctggctattgtaacgtctgtattttacccacagTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTCGAGTTCTGCCTTGGCTGCATCTCCAACACAGCCTCCTACT-GCGGCTCTGGGCCTTGAGCCTGGCCCATGCTcgtatgagacctttctctcagggtcacatcacagtatcctacctggtcaaa Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATT-GAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc aggaagggctgccagctctggctattgtaacgtctgtattttacccacagTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTCGAGTTCTGCCTTGGCTGCATCTCCAACACAGCCTCCT-ACTGCGGCTCTGGGCCTTGAGCCTGGCCCATGCTcgtatgagacctttctctcagggtcacatcacagtatcctacctggtcaaa Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATT-GAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC aggaagggctgccagctctggctattgtaacgtctgtattttacccacagTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTcGAGTTCTGCCTTGGCTGCATCTCCAACACAGCCTCCTA-CTGCGGCTCTGGGCCTTGAGCCTGGCCCATGCTCgtatgagacctttctctcagggtcacatcacagtatcctacctggtcaaa Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATT-GAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC aggaagggctgccagctctggctattgtaacgtctgtattttacccacagTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTCGAGTTCTGCCTTGGCTGCATCTCCAACACAGCCTCCTACT-GCGGCTCTGGGCCTTGAGCCTGGCCCATGCTCgtatgagacctttctctcagggtcacatcacagtatcctacctggtcaaa Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATT-GAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC aggaagggctgccagctctggctattgtaacgtctgtattttacccacagTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTCGAGTTCTGCCTTGGCTGCATCTCCAACACAGCCTCCTAC-TGCGGCTCTGGGCCTTGAGCCTGGCCCATGCTCgtatgagacctttctctcagggtcacatcacagtatcctacctggtcaaa Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATT-GAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTAC--TTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC aggaagggctgccagctctggctattgtaacgtctgtattttacccacagTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTCGAGTTCTGCCTTGGCTGCATCTCCAACACAGCCTCCTACTG---CGGCTCTGGGCCTTGAGCCTGGCCCATGCTCgtatgagacctttctctcagggtcacatcacagtatcctacctggtcaaa Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATT-GAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC aggaagggctgccagctctggctattgtaacgtctgtattttacccacagTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTCGAGTTCTGCCTTGGCTGCATCTCCAACACAGCCTCCTAC-TGCGGCTCTGGGCCTTGAGCCTGGCCCATGCTCgtatgagacctttctctcagggtcacatcacagtatcctacctggtcaaa Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACC-ATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC aggaagggctgccagctctggctattgtaacgtctgtattttacccacagTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTCGAGTTCTGCCTTGGCTGCATCTCCAACACAGCCTCCTACTG-CGGCTCTGGGCCTTGAGCCTGGCCCATGCTCgtatgagacctttctctcagggtcacatcacagtatcctacctggtcaaa #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTAC-GTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACCGTTCTGGTGGTCCTGGCTTTGGCTACTGTCC-TATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from CESAR GAAGTGGTACAGTAC-GTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACCGTTCTGGTGGTCCTGGCTTTGGCTACTG-TCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Spaln_aa2Genome GAAGTGGTACAGTAC-GTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACcGTTCTGGTGGTCCTGGCTTTGGCTACTGT-CCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Spaln_nt2Genome GAAGTGGTACAGTA-CGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACCGTTCTGGTGGTCCTGGCTTTGGCTACTG-TCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAAGAAACACTCAGAGAAG---AGCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Pairagon GAAGTGGTACAGTA-CGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACCGTTCTGGTGGTCCTGGCTTTGGCTACTG-TCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAAGAAACACTCAGAGAAG---AGCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACCGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACCGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACCGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGCAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTG-GGTGTTCCTCAGCATCTTCAATCATgtgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcac Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGCAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTG-GGTGTTCCTCAGCATCTTCAATCATgtgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcga Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGcAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGG-GTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcac Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGCAAGATGTCTGTCATCTTAGGGGTCACACACATGGCC-TTTGGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcac Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGCAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTT-GGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcac Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGG--GTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGCAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGTG---TTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcac Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGG--GTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGCAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGTG---TTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcac Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG---ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGCAAGATGTCTGTCATCTTAGGGGTCACACACAT---GGCCTTTGGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcac #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCC-CAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagtGACGAGTATCTGTCCCCAGCACTCCATGCTCACCCTGAACCCTA-CATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from CESAR tGACGAGTATCTGTCC-CAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagtGACGAGTATCTGTCCCCAGCACTCCATGCTCACCCTGAACCCT-ACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Spaln_aa2Genome TGACGAGTATCTGTCC-CAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCcCAGCACTCCATGCTCACCCTGAACCCTAC-ATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Spaln_nt2Genome TGACGAGTATCTGT-CCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCCAGCACTCCATGCTCACCCTGAACCCT-ACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Pairagon TGACGAGTATCTGT-CCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCCAGCACTCCATGCTCACCCTGAACCCT-ACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCCAGCACTCCATGCTCACCCTGAACCCTACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCCAGCACTCCATGCTCACCCTGAACCCTACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCCAGCACTCCATGCTCACCCTGAACCCTACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAG-CTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggcttccttgataattaaaatttttatattctagGTCTTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGTCGGGTGCAGCAGCCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGA-GAAGGCAGTCTACCTGACCCTCAACCAATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACTGTGCAACAGGCCCTACAGAGTGGCTCAgtaagtatccaggctgccagaggcctgctcctttcctccttctactccca Alignment from CESAR GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAG-CTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggcttccttgataattaaaatttttatattctagGTCTTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGTCGGGTGCAGCAGCCTGCTGCCCCCATGGCAGGTGCAGATCCACAAG-AGAAGGCAGTCTACCTGACCCTCAACCAATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACTGTGCAACAGGCCCTACAGAGTGGCTCAgtaagtatccaggctgccagaggcctgctcctttcctccttctactccca Alignment from Spaln_aa2Genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggcttccttgataattaaaatttttatattctagGTCTTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGTCGGGTGCAGCAGCCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGAGAAGGCAGTCTACCTGACCCTCAACCAATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACTGTGCAACAGGCCCTACAGAGTGGCTCAgtaagtatccaggctgccagaggcctgctcctttcctccttctactccca Alignment from Spaln_nt2Genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAG-CTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggcttccttgataattaaaatttttatattctagGTCTTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGTCGGGTGCAGCAGCCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGA-GAAGGCAGTCTACCTGACCCTCAACCAATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACTGTGCAACAGGCCCTACAGAGTGGCTCAgtaagtatccaggctgccagaggcctgctcctttcctccttctactccca Alignment from Pairagon GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAG-CTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggcttccttgataattaaaatttttatattctagGTCTTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGTCGGGTGCAGCAGCCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGA-GAAGGCAGTCTACCTGACCCTCAACCAATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACTGTGCAACAGGCCCTACAGAGTGGCTCAgtaagtatccaggctgccagaggcctgctcctttcctccttctactccca Alignment from Exonerate_protein2genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggcttccttgataattaaaatttttatattctagGTCTTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGTCGGGTGCAGCAGCCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGAGAAGGCAGTCTACCTGACCCTCAACCAATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACTGTGCAACAGGCCCTACAGAGTGGCTCAgtaagtatccaggctgccagaggcctgctcctttcctccttctactccca Alignment from Exonerate_coding2genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggcttccttgataattaaaatttttatattctagGTCTTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGTCGGGTGCAGCAGCCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGAGAAGGCAGTCTACCTGACCCTCAACCAATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACTGTGCAACAGGCCCTACAGAGTGGCTCAgtaagtatccaggctgccagaggcctgctcctttcctccttctactccca Alignment from GeneWise GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggcttccttgataattaaaatttttatattctagGTCTTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGTCGGGTGCAGCAGCCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGAGAAGGCAGTCTACCTGACCCTCAACCAATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACTGTGCAACAGGCCCTACAGAGTGGCTCAgtaagtatccaggctgccagaggcctgctcctttcctccttctactccca #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTG-GAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagcTTCCACTGTCATGTCTTCTCATACCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGC-GCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTG-GAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagcTTCCACTGTCATGTCTTCTCATACCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAG-CGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCTTCTCATACCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTG-GAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCTTCTCATACCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGC-GCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTG-GAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCTTCTCATACCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGC-GCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCTTCTCATACCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCTTCTCATACCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCTTCTCATACCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGC-ATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagccTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCCATCCAGGAGGAGACGGATCGCTTGGCCCAGG-GCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGC-ATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagccTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCCATCCAGGAGGAGACGGATCGCTTGGCCCAG-GGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCCATCCAGGAGGAGACGGATCGCTTGGCCCAGGGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCG-CATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCCATCCAGGAGGAGACGGATCGCTTGG-CCCAGGGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCG-CATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCCATCCAGGAGGAGACGGATCGCTTGGCCCAGG-GCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCCATCCAGGAGGAGACGGATCGCTTGGCCCAGGGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCCATCCAGGAGGAGACGGATCGCTTGGCCCAGGGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCCATCCAGGAGGAGACGGATCGCTTGGCCCAGGGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTG-AGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGCAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCT-TGAGGAACTGGAGAAGACGTTTagtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from CESAR CTCAACGAATCCGTG-AGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGCAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCGC-TTGAGGAACTGGAGAAGACGTTTagtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Spaln_aa2Genome CGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagttcaatgaatccgtgcagTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTT-GAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Spaln_nt2Genome CTCAACGAATCCGTG-AGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGCAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCT-TGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Pairagon CTCAACGAATCCGTG-AGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGCAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCT-TGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Exonerate_protein2genome CTCAACGAATCCGTG-AGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGC--TGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGCAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTT---GAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Exonerate_coding2genome CTCAACGAATCCGTG-AGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGCAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCGC-TTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGCAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg #### Tctn3_ID7993_8 --> 0 - 0 Original Alignment TTCCAGGTTCCTGTGACGCTT-GCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG acagaggcgattttcacatctccgttgatgactttgctattttcccacagTTCCAGGTTCCTGTGACACTTCGCCTCACAAGCCAGCCCTCCTTTGTTGGCTGGAAACA-ATGTCAGAATATTGTTTCCCAGgtgaggaaactctaactctcctcataagaactgcatttagtctgttttac Alignment from CESAR TTCCAGGTTCCTGTGACGCTT-GCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG acagaggcgattttcacatctccgttgatgactttgctattttcccacagTTCCAGGTTCCTGTGACACTTCGCCTCACAAGCCAGCCCTCCTTTGTTGGCTGGAAAC-AATGTCAGAATATTGTTTCCCAGgtgaggaaactctaactctcctcataagaactgcatttagtctgttttac Alignment from Spaln_aa2Genome TTCCAGGTTCCTGTGACGCTT-GCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG acagaggcgattttcacatctccgttgatgactttgctattttcccacagTTCCAGGTTCCTGTGACACTTcGCCTCACAAGCCAGCCCTCCTTTGTTGGCTGGAAACAA-TGTCAGAATATTGTTTCCCAGgtgaggaaactctaactctcctcataagaactgcatttagtctgttttac Alignment from Spaln_nt2Genome TTCCAGGTTCCTGTGACGCTT-GCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG acagaggcgattttcacatctccgttgatgactttgctattttcccacagTTCCAGGTTCCTGTGACACTTCGCCTCACAAGCCAGCCCTCCTTTGTTGGCTGGAAACA-ATGTCAGAATATTGTTTCCCAGgtgaggaaactctaactctcctcataagaactgcatttagtctgttttac Alignment from Pairagon TTCCAGGTTCCTGTGACGCTT-GCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG acagaggcgattttcacatctccgttgatgactttgctattttcccacagTTCCAGGTTCCTGTGACACTTCGCCTCACAAGCCAGCCCTCCTTTGTTGGCTGGAAACA-ATGTCAGAATATTGTTTCCCAGgtgaggaaactctaactctcctcataagaactgcatttagtctgttttac Alignment from Exonerate_protein2genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG acagaggcgattttcacatctccgttgatgactttgctattttcccacagTTCCAGGTTCCTGTGACACTTCGCCTCACAAGCCAGCCCTCCTTTGTTGGCTGGAAACAATGTCAGAATATTGTTTCCCAGgtgaggaaactctaactctcctcataagaactgcatttagtctgttttac Alignment from Exonerate_coding2genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG acagaggcgattttcacatctccgttgatgactttgctattttcccacagTTCCAGGTTCCTGTGACACTTCGCCTCACAAGCCAGCCCTCCTTTGTTGGCTGGAAACAATGTCAGAATATTGTTTCCCAGgtgaggaaactctaactctcctcataagaactgcatttagtctgttttac Alignment from GeneWise TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG acagaggcgattttcacatctccgttgatgactttgctattttcccacagTTCCAGGTTCCTGTGACACTTCGCCTCACAAGCCAGCCCTCCTTTGTTGGCTGGAAACAATGTCAGAATATTGTTTCCCAGgtgaggaaactctaactctcctcataagaactgcatttagtctgttttac #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGCAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGG-GGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAggtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGCAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCG-GGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAggtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGcAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGG-GGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTA-CCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGCAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGG-GGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGCAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGG-GGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGCAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAG---CTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCG--CAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGG-GGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGCAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAG-AATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg ctctggtgaataagataagacattgtccgtgctttgtccctctacttcagATTTTTTCATTGGGCTATTGCCCGACTGGAGAGTGGCTTGCAGTGGGGATGGAGCAACAGCAATGTGGAAGTATTGCATGTCACCA-ACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtaaataaactccccttttccagtttttgtaaattgaatgattgcttggt Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAG-AATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg ctctggtgaataagataagacattgtccgtgctttgtccctctacttcagATTTTTTCATTGGGCTATTGCCCGACTGGAGAGTGGCTTGCAGTGGGGATGGAGCAACAGCAATGTGGAAGTATTGCATGTCACC-AACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtaaataaactccccttttccagtttttgtaaattgaatgattgcttggt Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG ctctggtgaataagataagacattgtccgtgctttgtccctctacttcagATTTTTTCATTGGGCTATTGCCCGACTGGAGAGTGGCTTGCAGTGGGGATGGAGCAACAGCAATGTGGAAGTATTGCATGTCACCAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaaataaactccccttttccagtttttgtaaattgaatgattgcttggt Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAG-AATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG ctctggtgaataagataagacattgtccgtgctttgtccctctacttcagATTTTTTCATTGGGCTATTGCCCGACTGGAGAGTGGCTTGCAGTGGGGATGGAGCAACAGCAATGTGGAAGTATTGCATGTCACC-AACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaaataaactccccttttccagtttttgtaaattgaatgattgcttggt Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAG-AATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG ctctggtgaataagataagacattgtccgtgctttgtccctctacttcagATTTTTTCATTGGGCTATTGCCCGACTGGAGAGTGGCTTGCAGTGGGGATGGAGCAACAGCAATGTGGAAGTATTGCATGTCACC-AACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaaataaactccccttttccagtttttgtaaattgaatgattgcttggt Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG ctctggtgaataagataagacattgtccgtgctttgtccctctacttcagATTTTTTCATTGGGCTATTGCCCGACTGGAGAGTGGCTTGCAGTGGGGATGGAGCAACAGCAATGTGGAAGTATTGCATGTCACCAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaaataaactccccttttccagtttttgtaaattgaatgattgcttggt Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG ctctggtgaataagataagacattgtccgtgctttgtccctctacttcagATTTTTTCATTGGGCTATTGCCCGACTGGAGAGTGGCTTGCAGTGGGGATGGAGCAACAGCAATGTGGAAGTATTGCATGTCACCAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaaataaactccccttttccagtttttgtaaattgaatgattgcttggt Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG ctctggtgaataagataagacattgtccgtgctttgtccctctacttcagATTTTTTCATTGGGCTATTGCCCGACTGGAGAGTGGCTTGCAGTGGGGATGGAGCAACAGCAATGTGGAAGTATTGCATGTCACCAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaaataaactccccttttccagtttttgtaaattgaatgattgcttggt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTG-GTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccaggtCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGCGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACC-GGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTggtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTG-GTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccaggtCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGCGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTAC-CGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTggtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTG-GTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGcGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCG-GGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTG-GTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGCGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACC-GGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTG-GTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGCGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACC-GGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTG-GTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTAC--CTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGCGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCG---GGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTG---GTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGC--TGCGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCGG-GAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTG-GTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGCGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCG-GGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTCCGAGGG-GCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggctgggactcctaccccaccatctggaggccttcctgtctctcccagtcATTGGTTACTACATCTTCCGAGGGCGCCAACTCCCAGAAAAACACATTCAGGCAGA-TCCTTCTGAGCCCAGTGTGGCTggtaggatgggtctcttagaggttatgcatgaaatgaaacaggagggcttt Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGG-GCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggctgggactcctaccccaccatctggaggccttcctgtctctcccagtcATTGGTTACTACATCTTCCGAGGGCGCCAACTCCCAGAAAAACACATTCAGGC-AGATCCTTCTGAGCCCAGTGTGGCTggtaggatgggtctcttagaggttatgcatgaaatgaaacaggagggcttt Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGA-GGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggctgggactcctaccccaccatctggaggccttcctgtctctcccagTCATTGGTTACTACATCTTCCGAgGGCGCCAACTCCCAGAAAAACACATTCAGGCAGAT-CCTTCTGAGCCCAGTGTGGCTGgtaggatgggtctcttagaggttatgcatgaaatgaaacaggagggcttt Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGA-GGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggctgggactcctaccccaccatctggaggccttcctgtctctcccagTCATTGGTTACTACATCTTCCGAGGGCGCCAACTCCCAGAAAAACACATTCAGGCAGA-TCCTTCTGAGCCCAGTGTGGCTGgtaggatgggtctcttagaggttatgcatgaaatgaaacaggagggcttt Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGG-GCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggctgggactcctaccccaccatctggaggccttcctgtctctcccagTCATTGGTTACTACATCTTCCGAGGGCGCCAACTCCCAGAAAAACACATTCAGGCAG-ATCCTTCTGAGCCCAGTGTGGCTGgtaggatgggtctcttagaggttatgcatgaaatgaaacaggagggcttt Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggctgggactcctaccccaccatctggaggccttcctgtctctcccagTCATTGGTTACTACATCTTCCGAGGGCGCCAACTCCCAGAAAAACACATTCAGGCAGATCCTTCTGAGCCCAGTGTGGCTGgtaggatgggtctcttagaggttatgcatgaaatgaaacaggagggcttt Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggctgggactcctaccccaccatctggaggccttcctgtctctcccagTCATTGGTTACTACATCTTCCGAGGGCGCCAACTCCCAGAAAAACACATTCAGGCAGATCCTTCTGAGCCCAGTGTGGCTGgtaggatgggtctcttagaggttatgcatgaaatgaaacaggagggcttt Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggctgggactcctaccccaccatctggaggccttcctgtctctcccagTCATTGGTTACTACATCTTCCGAGGGCGCCAACTCCCAGAAAAACACATTCAGGCAGATCCTTCTGAGCCCAGTGTGGCTGgtaggatgggtctcttagaggttatgcatgaaatgaaacaggagggcttt #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTC-AGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccaggcTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAG-CCTGGCTCCTGGGGGAAACTCAggtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTC-AGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccaggcTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAG-CCTGGCTCCTGGGGGAAACTCAggtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTT-CAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCC-TGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTT-CAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAG-CCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCC-TCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAG-CCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTG-GAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGT-CATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTG-GAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTG-TCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTG-GAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTG-TCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTG-GAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTG-TCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTG-GAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTG-TCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCA-TGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagcTGCTCTGAAGCCCAGAAGACCGCACTGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACC-ACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCA-TGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagcTGCTCTGAAGCCCAGAAGACCGCACTGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAAC-CACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCA-TGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGAAGACCGCAcTGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCA-CATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCA-TGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGAAGACCGCACTGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACC-ACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCA-TGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGAAGACCGCACTGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACC-ACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCA-TGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGAAGACCGCACTGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Exonerate_coding2genome GAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagctgctctgAAGCCCAGAAGACCGCACTGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCA-CATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACC-TCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGAAGACCGCACTGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCA-CATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCC-ATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagaGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCCATCTTCCTAATCTTAGTGTCTGCCTGTATACTTCGATTTG-CACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTaggtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCC-ATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagaGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCCATCTTCCTAATCTTAGTGTCTGCCTGTATACTTCGATTT-GCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTaggtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCC-ATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCcATCTTCCTAATCTTAGTGTCTGCCTGTATACTTCGATTTGC-ACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAG-CCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCCATCTTCCTAATCTTAGTGTCTGCCTGTATACTTCGA-TTTGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAG-CCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCCATCTTCCTAATCTTAGTGTCTGCCTGTATACTTCGATTT-GCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCC-ATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTT--GGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCCATCTTCCTAATCTTAGTGTCTGCCTGTATACTTCGATTTGC---ACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Exonerate_coding2genome GTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGC-CATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagagGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCCATCTTCCTAATCTTAGTGTCTGCCTGTATACTTCGATTTGC-ACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGA---TTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCC---CATCTTCCTAATCTTAGTGTCTGCCTGTATACTTCGATTTGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga #### Tmem180_ID9861_3 --> 1 - 2 Original Alignment gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTC-TGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacaggTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCT-ATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgggtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from CESAR gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTC-TGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacaggTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAAT-TCTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgggtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Spaln_aa2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Spaln_nt2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATT-CTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTC-TATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Pairagon GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATT-CTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTC-TATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Exonerate_protein2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Exonerate_coding2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from GeneWise GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAAC-CCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGGAGTTCAACCCCAGAGTTTGTGGCGCGTATGATCCCCAAGG-GGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAAC-CCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGGAGTTCAACCCCAGAGTTTGTGGCGCGTATGATCCCCAAG-GGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGGAGTTCAACCCCAGAGTTTGTGGCGCGTATGATCCCCAAGGGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCG-GAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGGAGTTCAACCCCAGAGTTTGTGGCGCGTATGAT-CCCCAAGGGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAA-CCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGGAGTTCAACCCCAGAGTTTGTGGCGCGTATGATCCCCAAGG-GGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGGAGTTCAACCCCAGAGTTTGTGGCGCGTATGATCCCCAAGGGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Exonerate_coding2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGGAGTTCAACCCCAGAGTTTGTGGCGCGTATGATCCCCAAGGGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGGAGTTCAACCCCAGAGTTTGTGGCGCGTATGATCCCCAAGGGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAG-GGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGCGGTTTGTCACGCCAAGGAAGGACACGCATCCACC-GGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCggtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAG-GGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGCGGTTTGTCACGCCAAGGAAGGACACGCATCCAC-CGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCggtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAG-GGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGcGGTTTGTCACGCCAAGGAAGGACACGCATCCACCG-GCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAG-GGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGCGGTTTGTCACGCCAAGGAAGGACACGCATCCAC-CGGCCTCAGGATTGCC---AGACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAG-GGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGCGGTTTGTCACGCCAAGGAAGGACACGCATCCAC-CGGCCTCAGGATTGCC---AGACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGCGGTTTGTCACGCCAAGGAAGGACACGCATCCACCGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGCGGTTTGTCACGCCAAGGAAGGACACGCATCCACCGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGCGGTTTGTCACGCCAAGGAAGGACACGCATCCACCGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGAT-GAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcaggCTGATGGAGCATGAAGACGACCCTGATGTGGATCGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGG-ACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAggtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGAT-GAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcaggCTGATGGAGCATGAAGACGACCCTGATGTGGATCGAGCCTCTGGAGACTCCCCTCAGTCATGTCT-TGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAggtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATCGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGAT-GAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATCGAGCCTCTGGAGACTCCCCTCAGTCATGT-CTTGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGAT-GAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATCGAGCCTCTGGAGACTCCCCTCAGTCATGTCTT-GGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATCGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGA-TGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATCGAGCCTCTGGAGACTCCCCTCAGTCATGT-CTTGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATCGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGA-CCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcaggATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCCTCAGCAGCGCCCACCACGAGGTCCCCACA-GCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGA-CCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcaggATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCCTCAGCAGCGCCCACCACGAGGTCCCCAC-AGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCCTCAGCAGCGCCCACCACGAGGTCCCCACAGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGAC-CTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCCTCAGCAGCGCCCACCACGAGGTCCCCAC-AGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGA-CCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCCTCAGCAGCGCCCACCACGAGGTCCCCACA-GCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCCTCAGCAGCGCCCACCACGAGGTCCCCACAGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCCTCAGCAGCGCCCACCACGAGGTCCCCACAGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCCTCAGCAGCGCCCACCACGAGGTCCCCACAGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACACTGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTggtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from CESAR TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACACTGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTAT-CGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTggtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Spaln_aa2Genome TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACAcTGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCG-TATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Spaln_nt2Genome TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACACTGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Pairagon TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACACTGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Exonerate_protein2genome TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC--CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACACTGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCG---TATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Exonerate_coding2genome TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC--CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACACTGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCG---TATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from GeneWise TTGAGCTTC-GCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACACTGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCG-TATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTG-GTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCAATGTGCGTCAAACAACTAGTGCCCAGCTGTGTGACTG-GCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTG-GTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCAATGTGCGTCAAACAACTAGTGCCCAGCTGTGTGACT-GGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCAATGTGCGTCAAACAACTAGTGCCCAGCTGTGTGACTGGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTG-GTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCAATGTGCGTCAAACAACTAGTGCCCAGCTGTGTGACTG-GCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTG-GTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCAATGTGCGTCAAACAACTAGTGCCCAGCTGTGTGACTG-GCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCAATGTGCGTCAAACAACTAGTGCCCAGCTGTGTGACTGGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGT-CAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCAATGTGCGTCAAACAACTAGTGCCCAGCTGTGTGACTGG-CAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCAATGTGCGTCAAACAACTAGTGCCCAGCTGTGTGACTGGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGG-ATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagatATCGATGAATGCCAAAACCCAGGGCATCTGCAGTCAGATCTGTATCAACTTAA-AGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAggtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from CESAR atATTGATGAATGCCAAAACCCGGGG-ATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagatATCGATGAATGCCAAAACCCAGGGCATCTGCAGTCAGATCTGTATCAACT-TAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAggtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGCATCTGCAGTCAGATCTGTATCAACTTAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAA-CCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGCATCTGCAGTCAGATCTGTATCAACTT-AAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGG-ATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGCATCTGCAGTCAGATCTGTATCAACTT-AAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGCATCTGCAGTCAGATCTGTATCAACTTAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGCATCTGCAGTCAGATCTGTATCAACTTAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGCATCTGCAGTCAGATCTGTATCAACTTAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTCGAAGAATTTGTGGAGGGAATGGCGCTAGGAT-GAAAGCACTAGTTGGTGGAGCCGTTggtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from CESAR GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTCGAAGAATTTGTGGAGGGAATGGCGCTAG-GATGAAAGCACTAGTTGGTGGAGCCGTTggtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTCGAAGAATTTGTGGAGGGAATGGCGCTAGGATGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTCGAAGAATTTGTGGAGGGAATGGCGCTAGGA-TGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Pairagon GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTCGAAGAATTTGTGGAGGGAATGGCGCTAGGA-TGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTCGAAGAATTTGTGGAGGGAATGGCGCTAGGATGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTCGAAGAATTTGTGGAGGGAATGGCGCTAGGATGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTCGAAGAATTTGTGGAGGGAATGGCGCTAGGATGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTG-GCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg catttctaaaactttccttgtgttgttagaggatatttgtattgttatagctTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGCGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAAC-GAACATTTCTGAAATTAAAATTGAAggtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTG-GCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg catttctaaaactttccttgtgttgttagaggatatttgtattgttatagctTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGCGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAA-CGAACATTTCTGAAATTAAAATTGAAggtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTG-GCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGcGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACG-AACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGC-TTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGCGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAAC-GAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTG-GCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGCGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAAC-GAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTG-GCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAA--CAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGCGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACG---AACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTG-GCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAA--CAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGCGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACG---AACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGCGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagacTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCTTGG-TGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from CESAR acTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagacTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCTTG-GTGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCTTGGTGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCTTGG-TGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Pairagon ACTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCTTGG-TGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCTTGGTGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCTTGGTGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCTTGGTGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aggggtcacttgtttgtcaccccagtatatctctaccattgtccttgtagggGTGAACCTTCAACGGAAACATGCAGCAAATTTCACACCATCCGGACCAGCCACGGCGGGAGGAGGCAGTGAATGCTCTGT-CTGGGGCACTGGCAGTGAGACCCAAgtaggtagcctctggccgggccagagctaaaggatgcctgacaatcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aggggtcacttgtttgtcaccccagtatatctctaccattgtccttgtagggGTGAACCTTCAACGGAAACATGCAGCAAATTTCACACCATCCGGACCAGCCACGGCGGGAGGAGGCAGTGAATGCTCTG-TCTGGGGCACTGGCAGTGAGACCCAAgtaggtagcctctggccgggccagagctaaaggatgcctgacaatcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aggggtcacttgtttgtcaccccagtatatctctaccattgtccttgtagGGGTGAACCTTCAACGGAAACATGCAGCAAATTTCACACCATCCGGACCAGCCACGGCGGGAGGAGGCAGTGAATGCTCTGTCTGGGGCACTGGCAGTGAGACCCAAgtaggtagcctctggccgggccagagctaaaggatgcctgacaatcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aggggtcacttgtttgtcaccccagtatatctctaccattgtccttgtagGGGTGAACCTTCAACGGAAACATGCAGCAAATTTCACACCATCCGGACCAGCCACGGCGGGAGGAGGCAGTGAATGCTCTGT-CTGGGGCACTGGCAGTGAGACCCAAgtaggtagcctctggccgggccagagctaaaggatgcctgacaatcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGA-CAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aggggtcacttgtttgtcaccccagtatatctctaccattgtccttgtagGGGTGAACCTTCAACGGAAACATGCAGCAAATTTCACACCATCCGGACCAGCCACGGCGGGAGGAGGCAGTGAATGCTCTGT-CTGGGGCACTGGCAGTGAGACCCAAgtaggtagcctctggccgggccagagctaaaggatgcctgacaatcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aggggtcacttgtttgtcaccccagtatatctctaccattgtccttgtagGGGTGAACCTTCAACGGAAACATGCAGCAAATTTCACACCATCCGGACCAGCCACGGCGGGAGGAGGCAGTGAATGCTCTGTCTGGGGCACTGGCAGTGAGACCCAAgtaggtagcctctggccgggccagagctaaaggatgcctgacaatcctga Alignment from Exonerate_coding2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACA-GCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aggggtcacttgtttgtcaccccagtatatctctaccattgtccttgtagGGGTGAACCTTCAACGGAAACATGCAGCAAATTTCACACCATCCGGACCAGCCACGGCGGGAGGAGGCAGTGAATGCTCTGTC-TGGGGCACTGGCAGTGAGACCCAAgtaggtagcctctggccgggccagagctaaaggatgcctgacaatcctga Alignment from GeneWise GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aggggtcacttgtttgtcaccccagtatatctctaccattgtccttgtagGGGTGAACCTTCAACGGAAACATGCAGCAAATTTCACACCATCCGGACCAGCCACGGCGGGAGGAGGCAGTGAATGCTCTGTCTGGGGCACTGGCAGTGAGACCCAAgtaggtagcctctggccgggccagagctaaaggatgcctgacaatcctga #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATG-CGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCCGCCAGGATCCCACACATACACATGTCGTTG-CACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATG-CGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCCGCCAGGATCCCACACATACACATGTCGTTG-CACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCCGCCAGGATCCCACACATACACATGTCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATG-CGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCCGCCAGGATCCCACACATACACATGTCGTTG-CACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATG-CGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCCGCCAGGATCCCACACATACACATGTCGTTG-CACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCCGCCAGGATCCCACACATACACATGTCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCCGCCAGGATCCCACACATACACATGTCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTT---GCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCCGCCAGGA---TCCCACACATACACATGTCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGT-GGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagggCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTCGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAG-CTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGT-GGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagggCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTCGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAG-CTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTCGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGT-GGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTCGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAG-CTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGT-GGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTCGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAG-CTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTCGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTCGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTCGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGT-AATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTCAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGA-ACAAGACATTTGTAATGAAATAggtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGT-AATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTCAATCTACGGGAAGAACTGGTGGCTGTCTCAGAG-AACAAGACATTTGTAATGAAATAggtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTCAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAACAAGACATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGT-AATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTCAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGA-ACAAGACATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGT-AATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTCAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGA-ACAAGACATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTCAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAACAAGACATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTCAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAACAAGACATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTCAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAACAAGACATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACA-GGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATGCCCTCGAGACACGGGCAAGATGCCCGGGCAGCCATGAATTTGCACA-CAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACA-GGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATGCCCTCGAGACACGGGCAAGATGCCCGGGCAGCCATGAATTTGC-ACACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATGCCCTCGAGACACGGGCAAGATGCCCGGGCAGCCATGAATTTGCACACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACA-GGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATGCCCTCGAGACACGGGCAAGATGCCCGGGCAGCCATGAATTTGCAC-ACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACA-GGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATGCCCTCGAGACACGGGCAAGATGCCCGGGCAGCCATGAATTTGCAC-ACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATGCCCTCGAGACACGGGCAAGATGCCCGGGCAGCCATGAATTTGCACACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATGCCCTCGAGACACGGGCAAGATGCCCGGGCAGCCATGAATTTGCACACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATGCCCTCGAGACACGGGCAAGATGCCCGGGCAGCCATGAATTTGCACACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGT-GGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTCGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAG-TGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGT-GGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTCGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAG-TGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTCGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGT-GGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTCGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAG-TGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGT-GGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTCGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAG-TGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTCGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGT-GGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTCGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGA-GTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaATCTACGTCCCCTGTGTCCTCCCTAAAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTCGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt #### Yif1a_ID831_3 --> 0 - 0 Original Alignment CTGCACCGTTTTGTGTCCGTGAAC-AAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACCAAACTCAAGTATTTCTTTGCTGTGGACACAG-CTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from CESAR CTGCACCGTTTTGTGTCCGTGAAC-AAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACCAAACTCAAGTATTTCTTTGCTGTGGACACAG-CTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Spaln_aa2Genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACCAAACTCAAGTATTTCTTTGCTGTGGACACAGCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Spaln_nt2Genome CTGCACCGTTTTGTGTCCGTGAAC-AAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACCAAACTCAAGTATTTCTTTGCTGTGGACACAG-CTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Pairagon CTGCACCGTTTTGTGTCCGTGAA-CAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACCAAACTCAAGTATTTCTTTGCTGTGGACACAG-CTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Exonerate_protein2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACCAAACTCAAGTATTTCTTTGCTGTGGACACAGCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Exonerate_coding2genome CTGCACCGTTTTGTGTCCGTGAAC-AAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACCAAACTCAAGTATTTCTTTGCTGTGGACACAGCTACGTTG-CTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from GeneWise CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACCAAACTCAAGTATTTCTTTGCTGTGGACACAGCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTG-ATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGCATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTG-CCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTG-ATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGCATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTG-CCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTG-ATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGcATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGC-CTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTG-ATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGCATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTG-CCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTG-ATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGCATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTG-CCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTG-ATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTG--TGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGCATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGC---CTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTG-ATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTG--TGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGCATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGC---CTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from GeneWise GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGCATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGC-CTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGT-AAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCACTGTGTCCATCTGTCAAGAAGTGCATTTATCCCAAGCCAGCCCGAACAC-CCACTGCAGCATCTGTAACaggtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGT-AAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCACTGTGTCCATCTGTCAAGAAGTGCATTTATCCCAAGCCAGCCCGAACA-CCCACTGCAGCATCTGTAACaggtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGT-AAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCACTGTGTCCATCTGTcAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACC-CACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGT-AAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCACTGTGTCCATCTGTCAAGAAGTGCATTTATCCCAAGCCAGCCCGAACAC-CCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTGT-AAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCACTGTGTCCATCTGTCAAGAAGTGCATTTATCCCAAGCCAGCCCGAACAC-CCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCACTGTGTCCATCTGTCAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACCCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCACTGTGTCCATCTGTCAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACCCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCACTGTGTCCATCTGTCAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACCCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagggACAGCTAGTGGTTCCAACAGTCCCCACCTCGGATGCTGCATCGGTACAGAAAGCAGATG-TGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAaggtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from CESAR ggACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagggACAGCTAGTGGTTCCAACAGTCCCCACCTCGGATGCTGCATCGGTACAGAAAGCAGATG-TGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAaggtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCCACCTCGGATGCTGCATCGGTACAGAAAGCAGATGTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCT-ACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCCACCTCGGATGCTGCATCGGTACAGAAAGCAGATG-TGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCCACCTCGGATGCTGCATCGGTACAGAAAGCAGATG-TGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCCACCTCGGATGCTGCATCGGTACAGAAAGCAGATGTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCCACCTCGGATGCTGCATCGGTACAGAAAGCAGATGTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCCACCTCGGATGCTGCATCGGTACAGAAAGCAGATGTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCCTTCTGCTCACGGTGTTGCTCCTTCAAGGTGCCCCGCTCCT-TATGGGAGCCACAggtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCCTTCTGCTCACGGTGTTGCTCCTTCAAGGTGCCCCGCTCC-TTATGGGAGCCACAggtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCC---ACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCcTTCTGCTCACGGTGTTGCTCCTTCAAGGTGCCCCGCTCCTTATGGGAGCCACAGGTAGgtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAG-CTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCCTTCTGCTCACGGTGTTGCTCCTTCAAGGTGCCCCGCTCCT-TATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAG-CTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCCTTCTGCTCACGGTGTTGCTCCTTCAAGGTGCCCCGCTCCT-TATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATG---GGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCCTTCTGCTCACGGTGTTGCTCCTTCAAGGTGCCCCGCTCCTTATGGGAGCCACAGGTAGgtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCCTTCTGCTCACGGTGTTGCTCCTTCAAGGTGCCCCGCTCC-TTATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAAC-AGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAGCT- gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCCTTCTGCTCACGGTGTTGCTCCTTCAAGGTGCCCCGCTCCTTATGGGAGCCACAGGTAGgtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCT-GGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTCGGCCAT------CTCACAATGTTGTACCCAGAAC-GAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAggtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCT-GGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTCGGCCAT------CTCACAATGTTGTACCCAGAA-CGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAggtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTCGGCCATCT------CACAATGTTGTACCCAGAACGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCT-GGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTCGGCCA------TCTCACAATGTTGTACCCAGAAC-GAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCT-GGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTCGGCCA------TCTCACAATGTTGTACCCAGAAC-GAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTCGGCCATCT------CACAATGTTGTACCCAGAACGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTCGGCCATCT------CACAATGTTGTACCCAGAACGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTCGGCCATCT------CACAATGTTGTACCCAGAACGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta ####