#### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCCTTTGGCCTGGTACTTATCATTGCACCCTGGA-TTATCCTGTGAACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAggtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCCTTTGGCCTGGTACTTATCATTGCACCCT-GGATTATCCTGTGAACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAggtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCCTTTGGCCTGGTACTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCC-TTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCCTTTGGCCTGGTACTTATCATTGCA-CCCTGGATTATCCTGTGAACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCCTTTGGCCTGGTACTTATCATTGCACCCTGG-ATTATCCTGTGAACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCCTTTGGCCTGGTACTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCCTTTGGCCTGGTACTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCCTTTGGCCTGGTACTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTG-GTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTAAGGATTGGCAAAGGAAACGCCAGGTGCGTTGGGGCTGTGATAGACGAAGGGTTGACTATGA-GCACCACCTCAAGAAGCGAgcgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTG-GTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTAAGGATTGGCAAAGGAAACGCCAGGTGCGTTGGGGCTGTGATAGACGAAGGGTTGACTA-TGAGCACCACCTCAAGAAGCGAgcgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTG-GTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTAAGGATTGGCAAAGGAAACGCCAGGTGcGTTGGGGCTGTGATAGACGAAGGGTTGACTAT-GAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTG-GTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTAAGGATTGGCAAAGGAAACGCCAGGTGCGTTGGGGCTGTGATAGACGAAGGGTTGACTATG-AGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTG-GTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTAAGGATTGGCAAAGGAAACGCCAGGTGCGTTGGGGCTGTGATAGACGAAGGGTTGACTATG-AGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTAAGGATTGGCAAAGGAAACGCCAGGTGCGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Exonerate_coding2genome CCGGACGGAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGG-GGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttCCCACAGGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTAAGGATTGGCAAAGGAAACGCCAGGTGCGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAG-CACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTAAGGATTGGCAAAGGAAACGCCAGGTGCGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAAC-ATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtaggTCCAGTGCCCGTGCCAACCATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGC-GATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAggtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from CESAR gTCCAGTGCTCGTGCCAAC-ATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtaggTCCAGTGCCCGTGCCAACCATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAG-CGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAggtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAAC-ATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACcATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCG-ATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAA-CATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACCATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGC-GATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Pairagon GTCCAGTGCTCGTGCCAA-CATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACCATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGC-GATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACCATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAA-CATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACCATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCG-ATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACCATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta #### A630007B06Rik_ID12189_8 --> 0 - 0 Original Alignment ATGCATCATGCC-AAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGA-ATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from CESAR ATGCATCATGCC-AAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGG-AATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Spaln_aa2Genome TCAT------GCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGAA-TTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Spaln_nt2Genome ATGCATCATGCC-AAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGA-ATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Pairagon ATGCATCATG-CCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGA-ATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Exonerate_protein2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGAATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Exonerate_coding2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGAATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from GeneWise ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGAATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCC-ATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagagTCAGGCCAGGATGGCCGGCCAGATCCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGG-CCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCC-ATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagagTCAGGCCAGGATGGCCGGCCAGATCCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGG-CCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGAC-CCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATcCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGC-CTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGA-CCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGG-CCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGA-CCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGG-CCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGAC-CCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTG--GTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGC---CTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGAC-CCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTG--GTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGC---CTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCC-ATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGC-CTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTT-GTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtCATGTTGGTACTCCAGTAGCTTGCAATTTTCGTAAAGCTCGAAGATGTGGCAGACATGAACT-CTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTT-GTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtCATGTTGGTACTCCAGTAGCTTGCAATTTTCGTAAAGCTCGAAGATGTGGCAGACATGAAC-TCTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTCGTAAAGCTCGAAGATGTGGCAGACATGAACTCTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAA-TTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTCGTAAAGCTCGAAGATGTGGCAGACATGAACT-CTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTT-GTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTCGTAAAGCTCGAAGATGTGGCAGACATGAACT-CTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTCGTAAAGCTCGAAGATGTGGCAGACATGAACTCTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTCGTAAAGCTCGAAGATGTGGCAGACATGAACTCTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTCGTAAAGCTCGAAGATGTGGCAGACATGAACTCTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCATCT-CATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from CESAR AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCATCT-CATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_aa2Genome AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGcATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTC-ATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCATCT-CATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Pairagon AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCATCT-CATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_protein2genome AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATC--TCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTC---ATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_coding2genome AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATC--TCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTC---ATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from GeneWise AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAG-CAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCCAGGAACAGAACATCATCAATTACAAGA-CAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAG-CAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCCAGGAACAGAACATCATCAATTACAAG-ACAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCCAGGAACAGAACATCATCAATTACAAGACAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAG-CAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCCAGGAACAGAACATCATCAATTACAAGA-CAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAG-CAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCCAGGAACAGAACATCATCAATTACAAGA-CAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCCAGGAACAGAACATCATCAATTACAAGACAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCCAGGAACAGAACATCATCAATTACAAGACAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG----- tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCCAGGAACAGAACATCATCAATTACAAGACAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGGCTAAgtctcacccttgggaaaaagggaagggaaagggaagtgatgacat #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGA-GGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGACGGTGCCATCCTAGGCATCCAAGGAGAGATTCCGAAGATTTGCC-AACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGA-GGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGACGGTGCCATCCTAGGCATCCAAGGAGAGATTCCGAAGATTTGCC-AACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGACGGTGCCATCCTAGGCATCCAAGGAGAGATTCCGAAGATTTGCCAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGA-GGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGACGGTGCCATCCTAGGCATCCAAGGAGAGATTCCGAAGATTTGCC-AACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGA-GGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGACGGTGCCATCCTAGGCATCCAAGGAGAGATTCCGAAGATTTGCC-AACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGA-GGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGC--CAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGACGGTGCCATCCTAGGCATCCAAGGAGAGATTCCGAAGATTTGCCA---ACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGC---CATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAG--CGACGGTGCCATCCTAGGCATCCAAGGAGAGATTCCGAAGATTTGCCA-ACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAG-CGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGACGGTGCCATCCTAGGCATCCAAGGAGAGATTCCGAAGATTTGCCAACA-TACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt #### Actn3_ID697_13 --> 1 - 0 Original Alignment tGAGCTCGACTACCAT-GAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagtGAGCTTGACTACCATCGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTG-CCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from CESAR tGAGCTCGACTACCAT-GAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagtGAGCTTGACTACCATCGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGT-GCCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Spaln_aa2Genome TGAGCTCGACTACCAT-GAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATcGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGC-CAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Spaln_nt2Genome TGAGCTCGACTACCAT-GAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATCGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTG-CCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Pairagon TGAGCTCGACTACCAT-GAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATCGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTG-CCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Exonerate_protein2genome TGAGCTCGACTACCAT-GAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATC--TGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATCGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGC---CAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Exonerate_coding2genome TGAGCTCGACTACCAT-GAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATC--TGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATCGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGC---CAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from GeneWise TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATCGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGCCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc #### Actn3_ID704_6 --> 1 - 0 Original Alignment cTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagcTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAG-CCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from CESAR cTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagcTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCA-GCCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Spaln_aa2Genome CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGcGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGCCTT-ATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Spaln_nt2Genome CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGCCT-TATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Pairagon CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAG-CCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Exonerate_protein2genome CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCA--GACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGC---CTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Exonerate_coding2genome CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCA--GACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGC---CTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from GeneWise CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGCCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTT-CTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag caggctcttacccacttctcagccaacactttattaatgtcaacccatagagACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTGTCAGCGGAAAATAGCACCATACC-CAATGTCAATGTACAGAACTTCCATACTaggtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTT-CTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag caggctcttacccacttctcagccaacactttattaatgtcaacccatagagACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTGTCAGCGGAAAATAGCACCATAC-CCAATGTCAATGTACAGAACTTCCATACTaggtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTGTCAGCGGAAAATAGCACCATACCCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTC-TCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTGTCAGCGGAAAATAGCACCATACC-CAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCT-TCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTGTCAGCGGAAAATAGCACCATACC-CAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTGTCAGCGGAAAATAGCACCATACCCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTGTCAGCGGAAAATAGCACCATACCCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTGTCAGCGGAAAATAGCACCATACCCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagaaATTGTTGACGGGAACCTGAAAATGACCCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCA-TCAGGACATCTCTGTAGAAggtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagaaATTGTTGACGGGAACCTGAAAATGACCCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCA-TCAGGACATCTCTGTAGAAggtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCcCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCAT-CAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGA-CCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCAT-CAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGA-CCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCA-TCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCC--ATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCAT---CAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGAC---CCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATG--ACCCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCAT-CAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCAT-CAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGAT-ATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggtgttttgcttttgctctgcaggcATGGACTTACCAGCCTTTGAGATGGATCATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTG-GGATGGTGACCTGGCTGGCACTGTGCACCCACAACTGCAGgtgagtgttgtgggagccagggtaggagtactcagaacacccgactgaac Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGAT-ATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggtgttttgcttttgctctgcaggcATGGACTTACCAGCCTTTGAGATGGATCATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACT-GGGATGGTGACCTGGCTGGCACTGTGCACCCACAACTGCAGgtgagtgttgtgggagccagggtaggagtactcagaacacccgactgaac Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGAT-ATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggtgttttgcttttgctctgcagGCATGGACTTACCAGCCTTTGAGATGGATcATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGG-GATGGTGACCTGGCTGGCACTGTGCACCCACAACTGCAGgtgagtgttgtgggagccagggtaggagtactcagaacacccgactgaac Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGAT-ATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggtgttttgcttttgctctgcagGCATGGACTTACCAGCCTTTGAGATGGATCATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTG-GGATGGTGACCTGGCTGGCACTGTGCACCCACAACTGCAGgtgagtgttgtgggagccagggtaggagtactcagaacacccgactgaac Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGAT-ATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggtgttttgcttttgctctgcagGCATGGACTTACCAGCCTTTGAGATGGATCATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTG-GGATGGTGACCTGGCTGGCACTGTGCACCCACAACTGCAGgtgagtgttgtgggagccagggtaggagtactcagaacacccgactgaac Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggtgttttgcttttgctctgcagGCATGGACTTACCAGCCTTTGAGATGGATCATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGGGATGGTGACCTGGCTGGCACTGTGCACCCACAACTGCAGgtgagtgttgtgggagccagggtaggagtactcagaacacccgactgaac Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggtgttttgcttttgctctgcagGCATGGACTTACCAGCCTTTGAGATGGATCATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGGGATGGTGACCTGGCTGGCACTGTGCACCCACAACTGCAGgtgagtgttgtgggagccagggtaggagtactcagaacacccgactgaac Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggtgttttgcttttgctctgcagGCATGGACTTACCAGCCTTTGAGATGGATCATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGGGATGGTGACCTGGCTGGCACTGTGCACCCACAACTGCAGgtgagtgttgtgggagccagggtaggagtactcagaacacccgactgaac #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGC-TACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagacTATGCCTTGGGTAAGGACTGCATTGTAGATGGCCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGC-GCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGC-TACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagacTATGCCTTGGGTAAGGACTGCATTGTAGATGGCCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGG-CGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGC-TACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCcTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCG-CGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGC-TACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGC-GCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGG-CTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGC-GCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGC-TACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGG--CAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCG---CGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGC-TACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGG--CAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCG---CGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCT-GAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg ctggcacccgtgatctcctcatatatccaatttatactttcctcccatagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTG-CTTTGATACCATCAATGCTGAAACAGACCGGCTCGAGGCACGAAAG---GCCAAAAACAAACAGCTGGGCCATGAGGAGggtcagcacctgccacccgctttacactgcaggagtggaaagagagtctgc Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCT-GAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg ctggcacccgtgatctcctcatatatccaatttatactttcctcccatagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACT-GCTTTGATACCATCAATGCTGAAACAGACCGGCTCGAGGCACGA---AAGGCCAAAAACAAACAGCTGGGCCATGAGGAGggtcagcacctgccacccgctttacactgcaggagtggaaagagagtctgc Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccgtgatctcctcatatatccaatttatactttcctcccatagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTGCTTTGATACCATCAATGCTGAAACAGACCGGCTCGAGGCACGAAAG---GCCAAAAACAAACAGCTGGGCCATGAGGAGGgtcagcacctgccacccgctttacactgcaggagtggaaagagagtctgc Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCT-GAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccgtgatctcctcatatatccaatttatactttcctcccatagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTG-CTTTGATACCATCAATGCTGAAACAGACCGGCTCGAGGCACGA---AAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtcagcacctgccacccgctttacactgcaggagtggaaagagagtctgc Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCT-GAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccgtgatctcctcatatatccaatttatactttcctcccatagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTG-CTTTGATACCATCAATGCTGAAACAGACCGGCTCGAGGCACGA---AAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtcagcacctgccacccgctttacactgcaggagtggaaagagagtctgc Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccgtgatctcctcatatatccaatttatactttcctcccatagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTGCTTTGATACCATCAATGCTGAAACAGACCGGCTCGAGGCACGA---AAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtcagcacctgccacccgctttacactgcaggagtggaaagagagtctgc Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccgtgatctcctcatatatccaatttatactttcctcccatagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTGCTTTGATACCATCAATGCTGAAACAGACCGGCTCGAGGCACGA---AAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtcagcacctgccacccgctttacactgcaggagtggaaagagagtctgc Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccgtgatctcctcatatatccaatttatactttcctcccatagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTGCTTTGATACCATCAATGCTGAAACAGACCGGCTCGAGGCACGAAAG---GCCAAAAACAAACAGCTGGGCCATGAGGAGGgtcagcacctgccacccgctttacactgcaggagtggaaagagagtctgc #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaaggGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from CESAR gGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaaggGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATG-GCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Spaln_aa2Genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTC---TTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGGTCAgtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Spaln_nt2Genome GGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Pairagon GGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Exonerate_protein2genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAA actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Exonerate_coding2genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAA actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from GeneWise GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAGTAC actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGGTCAgtatataaccctccagggtgagatgtgtacctcctctgctgcccct #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTC-CGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGG-CATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTgggtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTC-CGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCCGATCCCTGCTGGAAGGTTTGTTGCAGAGG-GCATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTgggtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGCATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACT-CCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCG---TGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGG-CATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACT-CCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGG---GCCGTGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGG-CATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGCATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGCATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGCATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCCTCCTGGACGAACATGGCCATGTGAGAATCTCAG-CTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaagcgcctagctattcactccaaccacaaccttcttcctctttgctca Alignment from CESAR CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCCTCCTGGACGAACATGGCCATGTGAGAATCTCA-GCTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaagcgcctagctattcactccaaccacaaccttcttcctctttgagta Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagccagCCAACA---TTCCTCCTGGACGAACATGGCCATGTGAGAATCTCAGC-TTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgctca Alignment from Spaln_nt2Genome CCAGCCAACATTC-TCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCCTCCTGGACGAACATGGCCATGTGAGAATCTCAG-CTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgctca Alignment from Pairagon CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCCTCCTGGACGAACATGGCCATGTGAGAATCTCAG-CTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgctca Alignment from Exonerate_protein2genome CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATC--TCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCCTCCTGGACGAACATGGCCATGTGAGAATCTCAGC---TTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgctca Alignment from Exonerate_coding2genome CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATC--TCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCCTCCTGGACGAACATGGCCATGTGAGAATCTCAGC---TTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgctca Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagccagCCAACA---TTCCTCCTGGACGAACATGGCCATGTGAGAATCTCAGC-TTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgctca #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAAT-GACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATCGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCG-TGAGGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGatgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from CESAR CTGACCATGAAT-GACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATCGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTC-GTGAGGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGatgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_aa2Genome CTGACCATGAAT-GACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATcGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGT-GAGGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_nt2Genome CTGACCATGAAT-GACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATCGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTC-GTGAGGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Pairagon CTGACCATGAAT-GACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATCGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTC-GTGAGGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_protein2genome CTGACCATGAAT-GACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTC--GGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATCGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGT---GAGGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_coding2genome CTGACCATGAAT-GACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTC--GGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATCGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGT---GAGGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATCGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGTGAGGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAACAATGCTACAGAGCATGTCCAGGCCCACCTTGTGAAAAAGC-GGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from CESAR CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAACAATGCTACAGAGCATGTCCAGGCCCACCTTGTGAAAAAG-CGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Spaln_aa2Genome -CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAACAATGCTACAGAGCATGTCCAGGCCCACCTTGTGAAAAAGCG-GTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Spaln_nt2Genome CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAACAATGCTACAGAGCATGTCCAGGCCCACCTTGTGAAAAAGC-GGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Pairagon CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAACAATGCTACAGAGCATGTCCAGGCCCACCTTGTGAAAAAGC-GGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAACAATGCTACAGAGCATGTCCAGGCCCACCTTGTGAAAAAGCGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Exonerate_coding2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAACAATGCTACAGAGCATGTCCAGGCCCACCTTGTGAAAAAGCGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAACAATGCTACAGAGCATGTCCAGGCCCACCTTGTGAAAAAGCGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAG-CTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCCTGGAGACAGAGGAGGAACGTGTGGTCCGCA-CCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from CESAR ATCAAGAAATATGAGAAG-CTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCCTGGAGACAGAGGAGGAACGTGTGGTCCGCA-CCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAG-CTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGcCTGGAGACAGAGGAGGAACGTGTGGTCCGCAC-CGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGC-TGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCCTGGAGACAGAGGAGGAACGTGTGGTCCGCA-CCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Pairagon ATCAAGAAATATGAGAAG-CTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCCTGGAGACAGAGGAGGAACGTGTGGTCCGCA-CCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCCTGGAGACAGAGGAGGAACGTGTGGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCCTGGAGACAGAGGAGGAACGTGTGGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCCTGGAGACAGAGGAGGAACGTGTGGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCA-GGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCACACCACCACCCAGGAGGAGCCCCACACAGAGTCACCAGGAG-CCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCA-GGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCACACCACCACCCAGGAGGAGCCCCACACAGAGTCACCAGGA-GCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCA-GGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAcACCACCACCCAGGAGGAGCCCCACACAGAGTCACCAGGAGC-CCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGC-ACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCACACCACCACCCAGGAGGAGCCCCACACAGAGTCACCAGGAG-CCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCA-GGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCACACCACCACCCAGGAGGAGCCCCACACAGAGTCACCAGGAG-CCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCACACCACCACCCAGGAGGAGCCCCACACAGAGTCACCAGGAGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAA---GCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCG--GAGTCACACCACCACCCAGGAGGAGCCCCACACAGAGTCACCAGG-AGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAG------------CCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAG-------------------------------------------- cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCACACCACCACCCAGGAGGAGCCCCACACAGAGTC---ACCAGGAGCCCTGAGTTGCAGCAAGTGAGTGTGATTTGGCCAACAACTGTACCCTGCCTCCTCACCAGGCCCTG #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCA-CTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACCTGCTACCCAATTATTGCCAGTGCAAGC-GGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCA-CTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACCTGCTACCCAATTATTGCCAGTGCAAG-CGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACCTGCTACCCAATTATTGCCAGTGCAAGCGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCA-CTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACCTGCTACCCAATTATTGCCAGTGCAAGC-GGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCA-CTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACCTGCTACCCAATTATTGCCAGTGCAAGC-GGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACCTGCTACCCAATTATTGCCAGTGCAAGCGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACCTGCTACCCAATTATTGCCAGTGCAAGCGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACCTGCTACCCAATTATTGCCAGTGCAAGCGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG ctgaacattaggtccagcctagcctcaatgactctgcttttctctactagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGCGTGGATTTGGCCCTCAAGAACCTGCAGACCTGGATGA-GGATGAGCCTGTGTCCACGAACTTGgtaagacctgtcagcatggtgatggtgtcggtgagggcagaaatgggttg Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG ctgaacattaggtccagcctagcctcaatgactctgcttttctctactagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGCGTGGATTTGGCCCTCAAGAACCTGCAGACCTGGATGA-GGATGAGCCTGTGTCCACGAACTTGgtaagacctgtcagcatggtgatggtgtcggtgagggcagaaatgggttg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG ctgaacattaggtccagcctagcctcaatgactctgcttttctctactagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGcGTGGATTTGGCCCTCAAGAACCTGCAGACCTGGATGAG-GATGAGCCTGTGTCCACGAACTTGgtaagacctgtcagcatggtgatggtgtcggtgagggcagaaatgggttg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG ctgaacattaggtccagcctagcctcaatgactctgcttttctctactagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGCGTGGATTTGGCCCTCAAGAACCTGCAGACCTGGATGA-GGATGAGCCTGTGTCCACGAACTTGgtaagacctgtcagcatggtgatggtgtcggtgagggcagaaatgggttg Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG ctgaacattaggtccagcctagcctcaatgactctgcttttctctactagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGCGTGGATTTGGCCCTCAAGAACCTGCAGACCTGGATG-AGGATGAGCCTGTGTCCACGAACTTGgtaagacctgtcagcatggtgatggtgtcggtgagggcagaaatgggttg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATG--AAGGACGAGCCTGTGTCCACCAACTTG ctgaacattaggtccagcctagcctcaatgactctgcttttctctactagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGCGTGGATTTGGCCCTCAAGAACCTGCAGACCTGGATGAG---GATGAGCCTGTGTCCACGAACTTGgtaagacctgtcagcatggtgatggtgtcggtgagggcagaaatgggttg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATG--AAGGACGAGCCTGTGTCCACCAACTTG ctgaacattaggtccagcctagcctcaatgactctgcttttctctactagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGCGTGGATTTGGCCCTCAAGAACCTGCAGACCTGGATGAG---GATGAGCCTGTGTCCACGAACTTGgtaagacctgtcagcatggtgatggtgtcggtgagggcagaaatgggttg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG ctgaacattaggtccagcctagcctcaatgactctgcttttctctactagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGCGTGGATTTGGCCCTCAAGAACCTGCAGACCTGGATGAGGATGAGCCTGTGTCCACGAACTTGgtaagacctgtcagcatggtgatggtgtcggtgagggcagaaatgggttg #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCC-TTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGA-TTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGggtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCC-TTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCCTTTGGCCTTGTGCTTATCATTGCACCCT-GGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGggtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCCTTTGGCCTTGTGCTTATCATTGCACCCTGG-ATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC-AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcaggaAACTGTGTGGTATTGAAGCCATCTGAAATTAGTCAAGAACACAGAGAAGGTGCTGGCAGAGCTGC-GCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC-AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcaggaAACTGTGTGGTATTGAAGCCATCTGAAATTAGTCAAGAACACAGAGAAGGTGCTGGCAGAGCTG-CGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC-AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTcAAGAACACAGAGAAGGTGCTGGCAGAGCTGCG-CCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAG-CAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTCAAGAACACAGAGAAGGTGCTGGCAGAGCTGC-GCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAG-CAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTCAAGAACACAGAGAAGGTGCTGGCAGAGCTGC-GCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACC-TCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccaggaAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTCTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATT-CAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTggtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACC-TCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccaggaAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTCTCCCCCAACCTGGGCAGGATAATCAATCAGAAGC-ATTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTggtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTATGAT---GACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTCTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGAC-CTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTCTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCA-TTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGAC-CTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTCTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCA-TTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTCTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTCTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTCTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGAC-CTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccaggaAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAG-CACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGAC-CTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccaggaAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGG-CAGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGAC-CTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGcCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGC-ACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGA-CCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAG-CACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGA-CCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCA-GCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGA---CCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGAT--GAGCCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGC-AGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from GeneWise CCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccaggaagCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACC-AATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccctgtgtgtgtcttcttacgctttgattctcttccctgaagGTGTACAGTGCCACCCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACC-CTCTGACCAGGACAAGTTAAGGAACAAAggtaagtccacatgcaattgtcttctgcccagccatcctaggatctgtgcc Alignment from CESAR GTGTACAGTGCCACC-AATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccctgtgtgtgtcttcttacgctttgattctcttccctgaagGTGTACAGTGCCACCCAATGTGGAGCTGGTAACACGCACAAGAACAGAACAC-CCTCTGACCAGGACAAGTTAAGGAACAAAggtaagtccacatgcaattgtcttctgcccagccatcctaggatctgtgcc Alignment from Spaln_aa2Genome GTGTACAGTGCCACC-AATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccctgtgtgtgtcttcttacgctttgattctcttccctgaagGTGTACAGTGCCACCcAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCC-TCTGACCAGGACAAGTTAAGGAACAAAGgtaagtccacatgcaattgtcttctgcccagccatcctaggatctgtgcc Alignment from Spaln_nt2Genome GTGTACAGTGCCACC-AATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccctgtgtgtgtcttcttacgctttgattctcttccctgaagGTGTACAGTGCCACCCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACC-CTCTGACCAGGACAAGTTAAGGAACAAAGgtaagtccacatgcaattgtcttctgcccagccatcctaggatctgtgcc Alignment from Pairagon GTGTACAGTGCCA-CCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccctgtgtgtgtcttcttacgctttgattctcttccctgaagGTGTACAGTGCCACCCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACC-CTCTGACCAGGACAAGTTAAGGAACAAAGgtaagtccacatgcaattgtcttctgcccagccatcctaggatctgtgcc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccctgtgtgtgtcttcttacgctttgattctcttccctgaagGTGTACAGTGCCACCCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCCTCTGACCAGGACAAGTTAAGGAACAAAGgtaagtccacatgcaattgtcttctgcccagccatcctaggatctgtgcc Alignment from Exonerate_coding2genome GTGTACAGTGCCAC---CAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccctgtgtgtgtcttcttacgctttgattctcttccctgaagGTGTACAGTGCC--ACCCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCC-TCTGACCAGGACAAGTTAAGGAACAAAGgtaagtccacatgcaattgtcttctgcccagccatcctaggatctgtgcc Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccctgtgtgtgtcttcttacgctttgattctcttccctgaagGTGTACAGTGCCACCCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCCTCTGACCAGGACAAGTTAAGGAACAAAGgtaagtccacatgcaattgtcttctgcccagccatcctaggatctgtgcc #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAG-GACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGCGACCCCCAAGGGCGGACCCCCCTGGAGCTTG-TGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTggtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from CESAR CACGACATTGAGCAGGAG-GACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGCGACCCCCAAGGGCGGACCCCCCTGGAGCTTG-TGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTggtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGCGACCCCCAAGGGCGGACCCCCCTGGAGCTTGTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAG-GACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGCGACCCCCAAGGGCGGACCCCCCTGGAGCTTG-TGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Pairagon CACGACATTGAGCAGGAG-GACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGCGACCCCCAAGGGCGGACCCCCCTGGAGCTTG-TGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGCGACCCCCAAGGGCGGACCCCCCTGGAGCTTGTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Exonerate_coding2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGCGACCCCCAAGGGCGGACCCCCCTGGAGCTTGTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGCGACCCCCAAGGGCGGACCCCCCTGGAGCTTGTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGC-TACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCCTACAAAATCATCAAACTGCTGCTCTTACATG-GGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGC-TACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCCTACAAAATCATCAAACTGCTGCTCTTACATG-GGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCCTACAAAATCATCAAACTGCTGCTCTTACATGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCG-CTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCCTACAAAATCATCAAACTGCTGCTCTTACAT-GGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCG-CTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCCTACAAAATCATCAAACTGCTGCTCTTACAT-GGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCCTACAAAATCATCAAACTGCTGCTCTTACATGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCCTACAAAATCATCAAACTGCTGCTCTTACATGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCCTACAAAATCATCAAACTGCTGCTCTTACATGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACT-CGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccaaccttctctgtcctctggttttctgttcctagATGCGCTGGACTCCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCC-GCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgtgtggatggagagaggctctgggttgagcagctcacccaactgggaa Alignment from CESAR ATGCGTTGGACT-CGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccaaccttctctgtcctctggttttctgttcctagATGCGCTGGACTCCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGC-CGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgtgtggatggagagaggctctgggttgagcagctcacccaactgggaa Alignment from Spaln_aa2Genome ATGCGTTGGACT-CGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccaaccttctctgtcctctggttttctgttcctagATGCGCTGGACTcCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCG-CGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgtgtggatggagagaggctctgggttgagcagctcacccaactgggaa Alignment from Spaln_nt2Genome ATGCGTTGGACTC-GCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccaaccttctctgtcctctggttttctgttcctagATGCGCTGGACTCCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCC-GCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgtgtggatggagagaggctctgggttgagcagctcacccaactgggaa Alignment from Pairagon ATGCGTTGGACT-CGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccaaccttctctgtcctctggttttctgttcctagATGCGCTGGACTCCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCC-GCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgtgtggatggagagaggctctgggttgagcagctcacccaactgggaa Alignment from Exonerate_protein2genome ATGCGTTGGACT-CGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGC--CTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccaaccttctctgtcctctggttttctgttcctagATGCGCTGGACTCCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCG---CGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgtgtggatggagagaggctctgggttgagcagctcacccaactgggaa Alignment from Exonerate_coding2genome ATGCGTTGGACTCG---CGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccaaccttctctgtcctctggttttctgttcctagATGCGCTGGACT--CCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCG-CGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgtgtggatggagagaggctctgggttgagcagctcacccaactgggaa Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccaaccttctctgtcctctggttttctgttcctagATGCGCTGGACTCCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgtgtggatggagagaggctctgggttgagcagctcacccaactgggaa #### BC049760_ID1437_2 --> 0 - 2 Original Alignment CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAA-CCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCCTACTGTTACATTCCTGTTCACACTCCTGAACACAC-AGTGCCAATAGATGATGAGACAacgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from CESAR CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAA-CCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCCTACTGTTACATTCCTGTTCACACTCCTGAACACAC-AGTGCCAATAGATGATGAGACAacgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Spaln_aa2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCCTACTGTTACATTCCTGTTCACACTCCTGAACACACAGTGCCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Spaln_nt2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAA-CCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCCTACTGTTACATTCCTGTTCACACTCCTGAACAC-ACAGTGCCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Pairagon CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAA-CCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCCTACTGTTACATTCCTGTTCACACTCCTGAACAC-ACAGTGCCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Exonerate_protein2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCCTACTGTTACATTCCTGTTCACACTCCTGAACACACAGTGCCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Exonerate_coding2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACC---TACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAA--CCCTACTGTTACATTCCTGTTCACACTCCTGAACACACA-GTGCCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from GeneWise CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCG---------GTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCC---------TACTGTTACATTCCTGTTCACACTCCTGAACACACAGTGCCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAG-AAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagagGGCCAACTGTCAGAAGAAGAGCAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGC-AGAGCCAGAGGCCAGTGATggtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAG-AAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagagGGCCAACTGTCAGAAGAAGAGCAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGC-AGAGCCAGAGGCCAGTGATggtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAG-AAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGcAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAGAG-CCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAG-AAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGCAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCA-GAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAG-AAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGCAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGC-AGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGCAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGCAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGCAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATC-GGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtaagctgctattgttcatacagatcctcttttttctacttcacttacagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTCGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTC-GCTCCTTGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACtggcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATC-GGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtaagctgctattgttcatacagatcctcttttttctacttcacttacagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTCGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGT-CGCTCCTTGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACtggcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTCGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCGCTCCTTGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCA-TCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTCGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTC-GCTCCTTGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCA-TCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTCGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTC-GCTCCTTGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTCGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCGCTCCTTGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTCGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCGCTCCTTGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGAC---------------TG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTCGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCGCTCCTTGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGGCAAGTGAATGCTACgttctataataggcctggtatcccttggcaaatga #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATG-GGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtaggtGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGCGGTCCCAAGCTACTAGTAGAGACGGCAGACATGA-TGGTGAGAGGGAGCTTCGAGATGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATG-GGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtaggtGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGCGGTCCCAAGCTACTAGTAGAGACGGCAGACATGA-TGGTGAGAGGGAGCTTCGAGATGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGCGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATGGTGAGAGGGAGCTTCGAGATGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATG-GGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGCGGTCCCAAGCTACTAGTAGAGACGGCAGACATGA-TGGTGAGAGGGAGCTTCGAGATGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATG-GGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGCGGTCCCAAGCTACTAGTAGAGACGGCAGACATGA-TGGTGAGAGGGAGCTTCGAGATGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGCGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATGGTGAGAGGGAGCTTCGAGATGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGCGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATGGTGAGAGGGAGCTTCGAGATGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGCGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATGGTGAGAGGGAGCTTCGAGATGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAGGACAGGGATGGACGGATCACGGTGGCG-GAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCACGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGG-ACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from CESAR TTTGACAAGGACAGGGATGGACGGATCACGGTGGCG-GAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCACGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGG-ACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Spaln_aa2Genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCACGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Spaln_nt2Genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCG-GAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCACGAGCTGCGGCAGGCAGCACCAGCTCTGCT-GGGGGACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Pairagon TTTGACAAGGACAGGGATGGACGGATCACGGTGGCG-GAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT---AGACTTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCACGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGG-ACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Exonerate_protein2genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCACGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Exonerate_coding2genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCACGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from GeneWise TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGAC tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCACGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAG-CTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGAAGCCTGGGTCTGGTGGAGTTCAACATCCTATGGA-CCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from CESAR CGAGATGGCAACGGGAAG-CTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGAAGCCTGGGTCTGGTGGAGTTCAACATCCTAT-GGACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAG-CTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGAAGcCTGGGTCTGGTGGAGTTCAACATCCTATGGAC-CACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGC-TGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGAAGCCTGGGTCTGGTGGAGTTCAACATCCTATGG-ACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Pairagon CGAGATGGCAACGGGAAG-CTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGAAGCCTGGGTCTGGTGGAGTTCAACATCCTATGG-ACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGAAGCCTGGGTCTGGTGGAGTTCAACATCCTATGGACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGAAGCCTGGGTCTGGTGGAGTTCAACATCCTATGGACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from GeneWise ctcacataagtactttaggccaagtagttgtctgatctttccccatccagcgagatggaaatgggaagcctgggtctggtggagttcaacatcctatggaccacatccgaaattatctggcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAAC-CCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCCAGTTCATCGTGGATGGAGCCACCCGGA-AGACATCTGCCAGGGAGCACTGggtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from CESAR GAACTGATGTCAAACCCC-CAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCCAGTTCATCGTGGATGGAGCCACCCGG-AAGACATCTGCCAGGGAGCACTGggtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCC-CAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCcCAGTTCATCGTGGATGGAGCCACCCGGAA-GACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCC-AGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCCAGTTCATCGTGGATGGAGCCACCCGGA-AGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Pairagon GAACTGATGTCAAA-CCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCCAGTTCATCGTGGATGGAGCCACCCGGA-AGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCCAGTTCATCGTGGATGGAGCCACCCGGAAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Exonerate_coding2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCCAGTTCATCGTGGATGGAGCCACCCGGAAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCCAGTTCATCGTGGATGGAGCCACCCGGAAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTC-AGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGC-TCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAggtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from CESAR GTGGCTGTGAGGCTC-AGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCCAGTGGCTGTCGCTGGCATGGCCAACAGGCAT-TGCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAggtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Spaln_nt2Genome GTGGCTGTGAGGCT-CAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTG-CTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Pairagon GTGGCTGTGAGGCT-CAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTG-CTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from GeneWise -----AGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccataggtggctgtgagGCTCCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCT-CTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCT-AAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTCAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCC-GGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCT-AAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTCAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTC-CGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTCAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCT-AAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTCAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCC-GGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCT-AAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTCAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCC-GGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTCAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTCAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTCAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gacccatggacaagacccttgattaatgttgtctatttgttcttgcctaggcTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTTGGTTCTCTCAGCACCTTCCTAT-TCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gacccatggacaagacccttgattaatgttgtctatttgttcttgcctaggcTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTTGGTTCTCTCAGCACCTTCCTA-TTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTTGGTTCTCTCAGCACCTTCCTATTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTTGGTTCTCTCAGCACCTTCCTAT-TCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTTGGTTCTCTCAGCACCTTCCTAT-TCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTTGGTTCTCTCAGCACCTTCCTATTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTTGGTTCTCTCAGCACCTTCCTATTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTTGGTTCTCTCAGCACCTTCCTATTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAAC-CACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag tttctttcgtttgacatcatcctaaattcgggccactccctgtgctccagacTTTTTCATTATGGTCATGGCA---CTGGACTTTGTACTACTCCAGATAAATTCGCTCTCATACTCATTTTACAACCCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAA-TATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgagtagcaccacccctactcatgtttttggagagctctcaatgaagaa Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAAC-CACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag tttctttcgtttgacatcatcctaaattcgggccactccctgtgctccagacTTTTTCATTATGGTCATGGCA---CTGGACTTTGTACTACTCCAGATAAATTCGCTCTCATACTCATTTTACAACCCACAGCCTGTTCCACATTCTCAAAGTCTTCA-AAATATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgagtagcaccacccctactcatgtttttggagagctctcaatgaagaa Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG tttctttcgtttgacatcatcctaaattcgggccactccctgtgctccagACTTTTTCATTATGGTCATGGCA---CTGGACTTTGTACTACTCCAGATAAATTCGCTCTCATACTCATTTTACAACCCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAATATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagtagcaccacccctactcatgtttttggagagctctcaatgaagaa Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAAC-CACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG tttctttcgtttgacatcatcctaaattcgggccactccctgtgctccagACTTTTTCATTATGGTCATGGCA---CTGGACTTTGTACTACTCCAGATAAATTCGCTCTCATACTCATTTTACAACCCACAGCCTGTTCCACATTCTCAAAGTCTTC-AAAATATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagtagcaccacccctactcatgtttttggagagctctcaatgaagaa Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAA-CCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG tttctttcgtttgacatcatcctaaattcgggccactccctgtgctccagACTTTTTCATTATGGTCATGGCA---CTGGACTTTGTACTACTCCAGATAAATTCGCTCTCATACTCATTTTACAACCCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAA-TATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagtagcaccacccctactcatgtttttggagagctctcaatgaagaa Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG tttctttcgtttgacatcatcctaaattcgggccactccctgtgctccagACTTTTTCATTATGGTCATGGCA---CTGGACTTTGTACTACTCCAGATAAATTCGCTCTCATACTCATTTTACAACCCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAATATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagtagcaccacccctactcatgtttttggagagctctcaatgaagaa Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG tttctttcgtttgacatcatcctaaattcgggccactccctgtgctccagACTTTTTCATTATGGTCATGGCA---CTGGACTTTGTACTACTCCAGATAAATTCGCTCTCATACTCATTTTACAACCCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAATATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagtagcaccacccctactcatgtttttggagagctctcaatgaagaa Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG tttctttcgtttgacatcatcctaaattcgggccactccctgtgctccagACTTTTTCATTATGGTCATGGCA---CTGGACTTTGTACTACTCCAGATAAATTCGCTCTCATACTCATTTTACAACCCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAATATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagtagcaccacccctactcatgtttttggagagctctcaatgaagaa #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGT-GGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt tcccacttgcctcgccactaacttgactctgactccctggggccctccagcATCCTAACCAGCGTCCATGAAGTGGCTGGGACGCTGAGTCGGATCATTACCATCAATCACAGCCATCCTCACCCTCA-GTTCACCTGCCTCtgtatgttgtacaacagagattaggcagctgctagagtaagacagctggtg Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGT-GGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt tcccacttgcctcgccactaacttgactctgactccctggggccctccagcATCCTAACCAGCGTCCATGAAGTGGCTGGGACGCTGAGTCGGATCATTACCATCAATCACAGCCATCCTCACCCTC-AGTTCACCTGCCTCtgtatgttgtacaacagagattaggcagctgctagagtaagacagctggtg Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGT-GGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT tcccacttgcctcgccactaacttgactctgactccctggggccctccagCATCCTAACCAGCGTCCATGAAGTGGCTGGGACGCTGAGTcGGATCATTACCATCAATCACAGCCATCCTCACCCTCAG-TTCACCTGCCTCTgtatgttgtacaacagagattaggcagctgctagagtaagacagctggtg Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGT-GGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT tcccacttgcctcgccactaacttgactctgactccctggggccctccagCATCCTAACCAGCGTCCATGAAGTGGCTGGGACGCTGAGTCGGATCATTACCATCAATCACAGCCATCCTCACCCTCA-GTTCACCTGCCTCTgtatgttgtacaacagagattaggcagctgctagagtaagacagctggtg Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGT-GGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT tcccacttgcctcgccactaacttgactctgactccctggggccctccagCATCCTAACCAGCGTCCATGAAGTGGCTGGGACGCTGAGTCGGATCATTACCATCAATCACAGCCATCCTCACCCTCA-GTTCACCTGCCTCTgtatgttgtacaacagagattaggcagctgctagagtaagacagctggtg Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGT-GGATCTTTACCATCCATCACGGCCATCCTCACCCTC--ATGTTTACCTGCCTCT tcccacttgcctcgccactaacttgactctgactccctggggccctccagCATCCTAACCAGCGTCCATGAAGTGGCTGGGACGCTGAGTCGGATCATTACCATCAATCACAGCCATCCTCACCCTCAG---TTCACCTGCCTCTgtatgttgtacaacagagattaggcagctgctagagtaagacagctggtg Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGT-GGATCTTTACCATCCATCACGGCCATCCTCACCCTC--ATGTTTACCTGCCTCT tcccacttgcctcgccactaacttgactctgactccctggggccctccagCATCCTAACCAGCGTCCATGAAGTGGCTGGGACGCTGAGTCGGATCATTACCATCAATCACAGCCATCCTCACCCTCAG---TTCACCTGCCTCTgtatgttgtacaacagagattaggcagctgctagagtaagacagctggtg Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT tcccacttgcctcgccactaacttgactctgactccctggggccctccagCATCCTAACCAGCGTCCATGAAGTGGCTGGGACGCTGAGTCGGATCATTACCATCAATCACAGCCATCCTCACCCTCAGTTCACCTGCCTCTgtatgttgtacaacagagattaggcagctgctagagtaagacagctggtg #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTC-TGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg cctccctgtgtttggatgacccttctccgccttgcattcatccactctagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAA-TCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAggtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTC-TGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg cctccctgtgtttggatgacccttctccgccttgcattcatccactctagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGA-ATCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAggtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTC-TGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCcTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAT-CTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCT-CTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGC-GAATCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCT-CTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGC-GAATCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAATCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAATCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAATCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGG-GAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcaggAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTCGAGGGGGCCCTCCATGGGGGGCCTCGCCTGG-GGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGG-GAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcaggAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTCGAGGGGGCCCTCCATGGGGGGCCTCGCC-TGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTCGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGG-GAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTCGAGGGGGCCCTCCATGGGGGGCCTCGCCT-GGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCG-GGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTCGAGGGGGCCCTCCATGGGGGGCCTCGCCT-GGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTCGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTCGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTCGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTG-GCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGCGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGC-GCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from CESAR AATGCCACACTGGTG-GCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGCGCAGAGAAGGCGGCTCTGCAGGGCCAGCTG-CGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Spaln_aa2Genome AATGCCACACTGGTG-GCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGcGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCG-CACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Spaln_nt2Genome AATGCCACACTGGTG-GCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGCGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGC-GCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Pairagon AATGCCACACTGGTG-GCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGCGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGC-GCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGCGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGCGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from GeneWise --------------------------------------------------AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG GGGATGGCAGGGCTAACAACTTTAACACATCACAACAACCCCTCTCACAGAATGCCACACTGGTGCGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTAC-CCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGACCTG---GCTGGGGCACGGGCTGGGCCTTGGACTG-GGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from CESAR CTGCGCCAGTAC-CCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGACCTGGCT---GGGGCACGGGCTGGGCCTTGGACT-GGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGACCTGGCTGGGGCACG---GGCTGGGCCTTGGACTGGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCG-GTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGACCTGG---CTGGGGCACGGGCTGGGCCTTGGACTG-GGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Pairagon CTGCGCCAGTA-CCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGACCTGG---CTGGGGCACGGGCTGGGCCTTGGACTG-GGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGACCTGGCTGGGGCACG---GGCTGGGCCTTGGACTGGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCC--AGTGGACCTGGCTGGGGCACGGGCTGGGCCTTGGACTGG-GAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGACCTGGCTGGGGCACG---GGCTGGGCCTTGGACTGGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagccTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAACGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACC-GGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagccTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAACGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACC-GGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAACGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAACGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACC-GGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAACGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACC-GGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAACGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGC---AGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA--CGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCG-GAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAACGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCAC-CCCAGGTTCCCCTGGGGAGggtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCAC-CCCAGGTTCCCCTGGGGAGggtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGcGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCA-GGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCA-CCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCA-CCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCC-GGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAG---GAGGCTCGGTCACCTGCCACGCCTGCAGGAAGAACTCC-GCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGG--AGGCTCGGTCACCTGCCACGCCTGCAGGAAGAACTCC-GCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAGGCTC--GGTCACCTGCCACGCCTGCAGGAAGAACTCCG-CGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGA--GGCTCGGTCACCTGCCACGCCTGCAGGAAGAACTCC-GCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGA--GGCTCGGTCACCTGCCACGCCTGCAGGAAGAACT-CCGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTCGGTCACCTGCCACGCCTGCAGGAAGAACTCCGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Exonerate_coding2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG--GCTCGGTCACCTGCCACGCCTGCAGGAAGAACTCCG-CGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAA---GAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG------GCTCGGTCACCTGCCACGCCTGCAGGAAGAACTCCGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAG-CAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccaggGAAGAGAAGGCTGAGCCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGG-AGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from CESAR gGAGGAGAAGGCTGAG-CAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccaggGAAGAGAAGGCTGAGCCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGG-AGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Spaln_aa2Genome GAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagggaagagAAGGCTGAGCCAACTGCTAGACTCCCAGGCAGAGGTTCAGTT----GGAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGC-AACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGA-GCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Pairagon GGAGGAGAAGGCTGAG-CAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGA-GCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCCAACTGCTAGACTCCCAGGCAGA---GGTTCAGTTGGAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagggaagagAAGGCTGAGCCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGCT-GAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCT-GCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTCGCGGAGGGTGTCTCACACCATCTGGCTCTGC-GCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCT-GCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTCGCGGAGGGTGTCTCACACCATCTGGCTCTG-CGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTCGCGGAGGGTGTCTCACACCATCTGGCTCTGCGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCT-GCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTCGCGGAGGGTGTCTCACACCATCTGGCTCTGC-GCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCT-GCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTCGCGGAGGGTGTCTCACACCATCTGGCTCTGC-GCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTCGCGGAGGGTGTCTCACACCATCTGGCTCTGCGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTCGCGGAGGGTGTCTCACACCATCTGGCTCTGCGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTCGCGGAGGGTGTCTCACACCATCTGGCTCTGCGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCCTAATCCTATCACCACCTCCAGACCTCCAGACTACAG-GTGCGAGCCCTTCTCAggtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from CESAR GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCCTAATCCTATCACCACCTCCAGACCTCCAGACTACAG-GTGCGAGCCCTTCTCAggtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Spaln_aa2Genome GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAAGAG ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGcCTAATCCTATCACCACCTCCAGACCTCCAGACTACAGGTGCGAGCCCTTCT------CAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Spaln_nt2Genome GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCCTAATCCTATCACCACCTCCAGACCTCCAGACTA-CAGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Pairagon GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCCTAATCCTATCACCACCTCCAGACCTCCAGACTAC-AGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Exonerate_protein2genome GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCCTAATCCTATCACCACCTCCAGACCTCCAGACTACAGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Exonerate_coding2genome GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCCTAATCCTATCACCACCTCCAGACCTCCAGACTACAGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from GeneWise -CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAA ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaaggaggagctacagCTGCCTAATCCTATCACCACCTCCAGACCTCCAGACTACAGGTGCGAGCCCT---TCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagtGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATC-ATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagtGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCAT-CATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATC-ATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCA-GGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATC-ATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCAT--CTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCA---TGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGT-GATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCAT--CTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCA---TGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGC-CGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGCGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCA-TGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTG-GGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGCGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGG-GGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTatgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTG-GGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGCGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAG-GGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTatgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGCGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTG-GGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGCGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGG-GGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTG-GGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGCGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGG-GGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTG-GGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAG--GAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGCGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGG---GAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTG-GGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAG--GAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGCGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGG---GAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from GeneWise GCACTGGGACTGGCTGGGCTG-GTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGCGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGG-GAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTAT-GCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagatTATGCATTTCTAAATTATCGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCT-TTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from CESAR atTATGCCTTTCTAAATTAT-GCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagatTATGCATTTCTAAATTATCGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCC-TTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATCGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTAT-GCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATCGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCT-TTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Pairagon ATTATGCCTTTCTAAATTAT-GCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATCGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCT-TTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATCGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATCGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from GeneWise -------------------------------------------------GATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT TGGTGACTTAAGTGTTTTGTTGTTCAGGTCTCGAACTCTGACTGTTCTAGATTATGCATTTCTAAATTATCGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc #### Cd6_ID3012_12 --> 2 - 1 Original Alignment ggCCCTCAGCCGATGAC-AGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagggCCCTCAGCTGATGACCAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGC-ACCACCCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAggtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from CESAR ggCCCTCAGCCGATGAC-AGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagggCCCTCAGCTGATGACCAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAG-CACCACCCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAggtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Spaln_aa2Genome GGCCCTCAGCCGATGAC-AGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACcAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCA-CCACCCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Spaln_nt2Genome GGCCCTCAGCCGATGAC-AGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACCAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAG-CACCACCCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Pairagon GGCCCTCAGCCGATGA-CAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACCAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAG-CACCACCCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Exonerate_protein2genome GGCCCTCAGCCGATGAC-AGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAG--CCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACCAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCA---CCACCCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Exonerate_coding2genome GGCCCTCAGCCGATGAC-AGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAG--CCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACCAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCA---CCACCCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from GeneWise GCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagggccctcagCTGATGACCAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCA-CCACCCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct #### Cd6_ID3013_11 --> 2 - 1 Original Alignment gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTAT-TCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagaaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATCTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCA-CCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAggtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from CESAR gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTAT-TCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagaaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATCTCTCAGAAGAGTCCCCTCACAGAGCAACCCC-CCACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAggtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Spaln_aa2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATCTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Spaln_nt2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTAT-TCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCAC---------------CTCGTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATCTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAC-CTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Pairagon GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTAT-TCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTC---------------GTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATCTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCC-ACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Exonerate_protein2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATCTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Exonerate_coding2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATCTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from GeneWise GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTAT---TCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATCTCTCAGAAGAGTCCCCT---CACAGAGCAACCCCCCACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGC-TAAGTGGGAGATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from CESAR GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCCATGAAGATGTTG-CTAAGTGGGAGATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGcGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCT-AAGTGGGAGATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGC-TAAGTGGGAGATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGC-TAAGTGGGAGATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCTAAGTGGGAGATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCTAAGTGGGAGATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCTAAGTGGGAGATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAG-GGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGCGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCC-GGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAG-GGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGCGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTC-CGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGCGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAG-GGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGCGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCC-GGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAG-GGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGCGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCC-GGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAG-GGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTC--CAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGCGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCG---GATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCG---CTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAG--CGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCG-GATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGCGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCAC-ATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagaGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCCTTTGCCTTGCAGACTTTGGCTCCTGCC-GCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCAC-ATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagaGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCCTTTGCCTTGCAGACTTTGGCTCCTGC-CGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCCTTTGCCTTGCAGACTTTGGCTCCTGCCGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACA-TCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCCTTTGCCTTGCAGACTTTGGCTCCTGCC-GCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCA-CATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCCTTTGCCTTGCAGACTTTGGCTCCTGCC-GCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCCTTTGCCTTGCAGACTTTGGCTCCTGCCGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCCTTTGCCTTGCAGACTTTGGCTCCTGCCGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCCTTTGCCTTGCAGACTTTGGCTCCTGCCGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCC-CAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtggattgctagaggcctggctactctctcctctcttgacccctttgcagagCCCCTGCATGGTCCATTACAACCCCCAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCAGG-TCTTCAGGAGAAACTGGCAggtgagagtgacatgttcctagaatagccaagctccttcccaggtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTACAG-CCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtggattgctagaggcctggctactctctcctctcttgacccctttgcagagCCCCTGCATGGTCCATTACAACCCCCAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCAGG-TCTTCAGGAGAAACTGGCAggtgagagtgacatgttcctagaatagccaagctccttcccaggtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAG-CCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtggattgctagaggcctggctactctctcctctcttgacccctttgcagAGCCCCTGCATGGTCCATTACAAcCCCCAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCAGGT-CTTCAGGAGAAACTGGCAGgtgagagtgacatgttcctagaatagccaagctccttcccaggtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAG-CCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtggattgctagaggcctggctactctctcctctcttgacccctttgcagAGCCCCTGCATGGTCCATTACAACCCCCAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCAGG-TCTTCAGGAGAAACTGGCAGgtgagagtgacatgttcctagaatagccaagctccttcccaggtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTACAG-CCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtggattgctagaggcctggctactctctcctctcttgacccctttgcagAGCCCCTGCATGGTCCATTACAACCCCCAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCAGG-TCTTCAGGAGAAACTGGCAGgtgagagtgacatgttcctagaatagccaagctccttcccaggtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtggattgctagaggcctggctactctctcctctcttgacccctttgcagAGCCCCTGCATGGTCCATTACAACCCCCAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCAGGTCTTCAGGAGAAACTGGCAGgtgagagtgacatgttcctagaatagccaagctccttcccaggtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtggattgctagaggcctggctactctctcctctcttgacccctttgcagAGCCCCTGCATGGTCCATTACAACCCCCAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCAGGTCTTCAGGAGAAACTGGCAGgtgagagtgacatgttcctagaatagccaagctccttcccaggtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtggattgctagaggcctggctactctctcctctcttgacccctttgcagAGCCCCTGCATGGTCCATTACAACCCCCAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCAGGTCTTCAGGAGAAACTGGCAGgtgagagtgacatgttcctagaatagccaagctccttcccaggtcctagt #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAACAGG-GAAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAACAG-GGAAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAcAGCCCTGCCCCAAACATCCAGTTACAACAGGG-AAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAACAGG-GAAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAACAGG-GAAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAACAGGGAAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAACAGGGAAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAACAGGGAAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAA-GCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAACGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGC-TCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAA-GCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAACGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGC-TCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAACGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAA-GCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGC---GAACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAACGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCT-CAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAA-GCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGC---GAACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAACGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCT-CAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAACGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAACGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAACGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaaggATCAGTGTTGGGAAAGAGCGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGC-GCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from CESAR gATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaaggATCAGTGTTGGGAAAGAGCGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGC-GCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGcGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCGCTG-AGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGCGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGC-GCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Pairagon GATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGCGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGC-GCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGCGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGCGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGCGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag #### Cdc42bpg_ID1588_18 --> 1 - 0 Original Alignment gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAG-GAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacaggGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGCGAGCTAGAGTCCTTGAGGAATGTGGGCA-GCAGACACTCCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from CESAR gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAG-GAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacaggGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGCGAGCTAGAGTCCTTGAGGAATGTGGGCA-GCAGACACTCCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Spaln_aa2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGCGAGCTAGAGTCCTTGAGGAATGTGGGCAGCAGACACTCCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Spaln_nt2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAG-GAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGCGAGCTAGAGTCCTTGAGGAATGTGGGCA-GCAGACACTCCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Pairagon GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAG-GAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGCGAGCTAGAGTCCTTGAGGAATGTGGGCA-GCAGACACTCCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Exonerate_protein2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGCGAGCTAGAGTCCTTGAGGAATGTGGGCAGCAGACACTCCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Exonerate_coding2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGCGAGCTAGAGTCCTTGAGGAATGTGGGCAGCAGACACTCCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from GeneWise GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGCGAGCTAGAGTCCTTGAGGAATGTGGGCAGCAGACACTCCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt #### Cdc42bpg_ID1589_19 --> 0 - 2 Original Alignment GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTCGCCAAGCAAAGTCTGCAGGAGCAGCTTATGC-GGTGCAGGAGGCTCAGCGGCAGGCTGAAtggtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgc Alignment from CESAR GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTCGCCAAGCAAAGTCTGCAGGAGCAGCTTATG-CGGTGCAGGAGGCTCAGCGGCAGGCTGAAtggtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtga Alignment from Spaln_aa2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTCGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgc Alignment from Spaln_nt2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTCGCCAAGCAAAGTCTGCAGGAGCAGCTTATGC-GGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgc Alignment from Pairagon GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGT-GCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTCGCCAAGCAAAGTCTGCAGGAGCAGCTTATGC-GGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgc Alignment from Exonerate_protein2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTCGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgc Alignment from Exonerate_coding2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTCGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgc Alignment from GeneWise GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTCGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgc #### Cdc42bpg_ID1594_24 --> 0 - 1 Original Alignment CCCGGCTCACACACC-CTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCCTGCGACCCCGGAGTTTTCCATCTCCTACAAAGTGTCTCCGCT-CACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACagtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from CESAR CCCGGCTCACACACC-CTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCCTGCGACCCCGGAGTTTTCCATCTCCTACAAAGTGTCTCCGC-TCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACagtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Spaln_aa2Genome CGGCTCACACACC---CTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCCTGCGACCCCGGAGTTTTCCATCTCCTACAAAGTGTCTCCGCTC-ACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Spaln_nt2Genome CCCGGCTCACACACCC-TGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCCTGCGACCCCGGAGTTTTCCATCTCCTACAAAGTGTCTCCGCT-CACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Pairagon CCCGGCTCACACA-CCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCCTGCGACCCCGGAGTTTTCCATCTCCTACAAAGTGTCTCCGCT-CACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Exonerate_protein2genome CCCGGCTCACACACC-CTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGC--TGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCCTGCGACCCCGGAGTTTTCCATCTCCTACAAAGTGTCTCCGCTC---ACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Exonerate_coding2genome CCCGGCTCACACACC-CTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGC--TGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCCTGCGACCCCGGAGTTTTCCATCTCCTACAAAGTGTCTCCGCTC---ACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from GeneWise CGGCTCACACACC---CTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCCTGCGACCCCGGAGTTTTCCATCTCCTACAAAGTGTCTCCGCTC-ACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag #### Cdc42bpg_ID1595_25 --> 2 - 0 Original Alignment ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAA-CTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagccTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACCTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAG-GACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from CESAR ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAA-CTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagccTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACCTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAG-GACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Spaln_aa2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAA-CTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAAcCTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGG-ACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Spaln_nt2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAA-CTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACCTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGG-ACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Pairagon CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAA-CTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACCTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACA-GGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Exonerate_protein2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAA-CTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGG--ACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACCTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGACT---GCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Exonerate_coding2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACT---CCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAA--CCTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGG-ACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from GeneWise CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACCTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTCGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATC-TCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from CESAR GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTCGATTCCCGTCTGTTGTTGTTCGATGCTCCCG-ATCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Spaln_aa2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTCGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Spaln_nt2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTCGATTCCCGTCTGTTGTTGTTCGATGCTCCCGA-TCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Pairagon GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTCGATTCCCGTCTGTTGTTGTTCGATGCTCCCGA-TCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Exonerate_protein2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTCGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Exonerate_coding2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTCGATTCCCGTCTGTTGTTGTTCGATGCTCCCGAT-CTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from GeneWise GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTCGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCCACCCCT-GTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacaggGACCCCCAGTTTTCAGCCACCCCTCGTCTTGGCCCCAGATGTCATTCATGCCCAAT-CAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCT-GTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacaggGACCCCCAGTTTTCAGCCACCCCTCGTCTTGGCCCCAGATGTCATTCATGCCCAAT-CAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCACCCCTCGTCTTGGCCCCAGATGTCATTCATGCCCAATCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCA-CCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCACCCCTCGTCTTGGCCCCAGATGTCATTCATGCCCAAT-CAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Pairagon GGACCCCCAGTTCTCAGCCACCCCT-GTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCACCCCTCGTCTTGGCCCCAGATGTCATTCATGCCCAAT-CAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCACCCCTCGTCTTGGCCCCAGATGTCATTCATGCCCAATCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCACCCCTCGTCTTGGCCCCAGATGTCATTCATGCCCAATCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCACCCCTCGTCTTGGCCCCAGATGTCATTCATGCCCAATCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagaaAAGGATGAGTTTGAGATTCCCGACCCTGACAGACAACAGCCGGCGCCAGCTGTTCCGCAGCAAGA-CAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from CESAR agAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagaaAAGGATGAGTTTGAGATTCCCGACCCTGACAGACAACAGCCGGCGCCAGCTGTTCCGCAGCAAG-ACAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACcCTGACAGACAACAGCCGGCGCCAGCTGTTCCGCAGCAAGAC-AAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGA-CCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACAACAGCCGGCGCCAGCTGTTCCGCAGCAAGA-CAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGA-CCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACAACAGCCGGCGCCAGCTGTTCCGCAGCAAGA-CAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAG--AGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACAACAGCCGGCGCCAGCTGTTCCGCAGCAAGAC---AAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAG--AGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACAACAGCCGGCGCCAGCTGTTCCGCAGCAAGAC---AAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAGGGAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACAACAGCCGGCGCCAGCTGTTCCGCAGCAAGACAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGGTCAgtagctgtgacgtggctctggctactgggtgggaccttcctattct #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAAC-CACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccaggGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAATTCATCTCACCGCCCACCAACTTCATCCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCA-GGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTC-AACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccaggGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAATTCATCTCACCGCCCACCAACTTCATCCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCA-GGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTC-AACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAATTCATCTCACCGCCCACCAACTTCaTCCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGAT-GGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACC-ACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAATTCATCTCACCGCCCACCAACTTCATCCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCA-GGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCA-ACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAATTCATCTCACCGCCCACCAACTTCATCCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCA-GGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTC-AACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAATTCATCTCACCGCCCACCAACTTCATCCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTC-AACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAATTCATCTCACCGCCCACCAACTTCATCCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAATTCATCTCACCGCCCACCAACTTCATCCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt cccatggtccgagcttcacagtcctgtgtctctacgtgaacatgctgtagGCTCAAGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCGCAGCCGGCCTCACAGCTTCTTAGAGGCATTTCGGCGGCCAG-GTCCACAGACAGCGATGGTCTCCCAGGCAAAACAGACCCAtgtaagaacagccctcagtccgccagttctcgcatgcttcctccaccttac Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt cccatggtccgagcttcacagtcctgtgtctctacgtgaacatgctgtagGCTCAAGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCGCAGCCGGCCTCACAGCTTCTTAGAGGCATTTCGGCGGCCA-GGTCCACAGACAGCGATGGTCTCCCAGGCAAAACAGACCCAtgtaagaacagccctcagtccgccagttctcgcatgcttcctccaccttac Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtccgagcttcacagtcctgtgtctctacgtgaacatgctgtagGCTCAAGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCGCAGCCGGCCTCACAGCTTCTTAGAGGCATTTCGGCGGCCAGGTCCACAGACAGCGATGGTCTCCCAGGCAAAACAGACCCATgtaagaacagccctcagtccgccagttctcgcatgcttcctccaccttac Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtccgagcttcacagtcctgtgtctctacgtgaacatgctgtagGCTCAAGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCGCAGCCGGCCTCACAGCTTCTTAGAGGCATTTCGGCGGCCAG-GTCCACAGACAGCGATGGTCTCCCAGGCAAAACAGACCCATgtaagaacagccctcagtccgccagttctcgcatgcttcctccaccttac Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtccgagcttcacagtcctgtgtctctacgtgaacatgctgtagGCTCAAGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCGCAGCCGGCCTCACAGCTTCTTAGAGGCATTTCGGCGGCCAG-GTCCACAGACAGCGATGGTCTCCCAGGCAAAACAGACCCATgtaagaacagccctcagtccgccagttctcgcatgcttcctccaccttac Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtccgagcttcacagtcctgtgtctctacgtgaacatgctgtagGCTCAAGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCGCAGCCGGCCTCACAGCTTCTTAGAGGCATTTCGGCGGCCAGGTCCACAGACAGCGATGGTCTCCCAGGCAAAACAGACCCATgtaagaacagccctcagtccgccagttctcgcatgcttcctccaccttac Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtccgagcttcacagtcctgtgtctctacgtgaacatgctgtagGCTCAAGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCGCAGCCGGCCTCACAGCTTCTTAGAGGCATTTCGGCGGCCAGGTCCACAGACAGCGATGGTCTCCCAGGCAAAACAGACCCATgtaagaacagccctcagtccgccagttctcgcatgcttcctccaccttac Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtccgagcttcacagtcctgtgtctctacgtgaacatgctgtagGCTCAAGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCGCAGCCGGCCTCACAGCTTCTTAGAGGCATTTCGGCGGCCAGGTCCACAGACAGCGATGGTCTCCCAGGCAAAACAGACCCATgtaagaacagccctcagtccgccagttctcgcatgcttcctccaccttac #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCT-GGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gggctcccatcaggggttctatatcaagcatttgatgctttgtctttcagGCAATGAAGCCACCTCGGTTCCCAGGGCTCTCAGAGCACCTACACAGATCTGC-GTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAggtaagcgaagccatgggtaaactttaacagaacagtgcagtaaggaagga Alignment from CESAR GCGATGAAGCCACCT-GGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gggctcccatcaggggttctatatcaagcatttgatgctttgtctttcagGCAATGAAGCCACCTCGGTTCCCAGGGCTCTCAGAGCACCTACACAGATCTG-CGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAggtaagcgaagccatgggtaaactttaacagaacagtgcagtaaggaagga Alignment from Spaln_aa2Genome GCGATGAAGCCACCT-GGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gggctcccatcaggggttctatatcaagcatttgatgctttgtctttcagGCAATGAAGCCACCTcGGTTCCCAGGGCTCTCAGAGCACCTACACAGATCTGCG-TCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagcgaagccatgggtaaactttaacagaacagtgcagtaaggaagga Alignment from Spaln_nt2Genome GCGATGAAGCCACCT-GGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gggctcccatcaggggttctatatcaagcatttgatgctttgtctttcagGCAATGAAGCCACCTCGGTTCCCAGGGCTCTCAGAGCACCTACACAGATCTGC-GTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagcgaagccatgggtaaactttaacagaacagtgcagtaaggaagga Alignment from Pairagon GCGATGAAGCCACCT-GGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gggctcccatcaggggttctatatcaagcatttgatgctttgtctttcagGCAATGAAGCCACCTCGGTTCCCAGGGCTCTCAGAGCACCTACACAGATCTGC-GTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagcgaagccatgggtaaactttaacagaacagtgcagtaaggaagga Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gggctcccatcaggggttctatatcaagcatttgatgctttgtctttcagGCAATGAAGCCACCTCGGTTCCCAGGGCTCTCAGAGCACCTACACAGATCTGCGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagcgaagccatgggtaaactttaacagaacagtgcagtaaggaagga Alignment from Exonerate_coding2genome GCGATGAAGCCACCT-GGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gggctcccatcaggggttctatatcaagcatttgatgctttgtctttcagGCAATGAAGCCACCTCGGTTCCCAGGGCTCTCAGAGCACCTACACAGATCTGCGT-CTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagcgaagccatgggtaaactttaacagaacagtgcagtaaggaagga Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGA- gggctcccatcaggggttctatatcaagcatttgatgctttgtctttcagGCAATGAAGCCACCTCGGTTCCCAGGGCTCTCAGAGCACCTACACAGATCTGCGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagcgaagccatgggtaaactttaacagaacagtgcagtaaggaagga #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAACTCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAA-TGGAGATGGAGGTTTAGAAagtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from CESAR GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAACTCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAA-TGGAGATGGAGGTTTAGAAagtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Spaln_aa2Genome GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAAcTCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAAT-GGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Spaln_nt2Genome GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAACTCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAAT-GGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Pairagon GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAACTCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAA-TGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAACTCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAACTCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAACTCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcaggGCCCCTGAAAATGCACCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAGGATG-CATCAAGAGGAAGCTGACAggtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from CESAR gGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcaggGCCCCTGAAAATGCACCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAGGATG-CATCAAGAGGAAGCTGACAggtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGcAGCAAAATGATCTATGCAAGCTCCAAGGATGC-ATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAGGATGC-ATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Pairagon GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAGGATG-CATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAGGATGCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAGGATGCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAGGATGCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCT-TGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGG-TCTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACcACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTT-GAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGT-CTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTA-CACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGT-CTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTG--TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTT---GAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTG--TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTT---GAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACCACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTT-GAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttagctcttactcattcttggatgtcttcttatgatttttttttctaggtGACAGGGGCCCTGCTGGACCACCGAGGTCCTCCAGGGCAACCTGGTCCCA-AGGGAACAAAGGAGAGAAGGGGGACAAAggtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from CESAR gtGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttagctcttactcattcttggatgtcttcttatgatttttttttctaggtGACAGGGGCCCTGCTGGACCACCGAGGTCCTCCAGGGCAACCTGGTCCCA-AGGGAACAAAGGAGAGAAGGGGGACAAAggtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACCGAGGTCCTCCAGGGCAACCTGGTCCCAAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACCGAGGTCCTCCAGGGCAACCTGGTCCCA-AGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACCGAGGTCCTCCAGGGCAACCTGGTCCCA-AGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACCGAGGTCCTCCAGGGCAACCTGGTCCCAAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACCGAGGTCCTCCAGGGCAACCTGGTCCCAAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACCGAGGTCCTCCAGGGCAACCTGGTCCCAAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATC-CCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagccGCTGGTTTGTCCTCCATCCCCAGGCCCTGCAGGCCCACCAGGGCCACCAG-TCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAagtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from CESAR ccGCTGGTTTGTCCTCCATC-CCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagccGCTGGTTTGTCCTCCATCCCCAGGCCCTGCAGGCCCACCAGGGCCAC-CAGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAagtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCAT-CCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCCAGGCCCTGCAGGCCCACCAGGGCCACCA-GTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Pairagon CCGCTGGTTTGTCCTCCAT-CCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCCAGGCCCTGCAGGCCCACCAGGGCCACCA-GTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCC-CTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa gatagacactattgggcttctcgattcagaacaacatgtcttggtatcaggaAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCCTACTGTCT---------GGAGAGCTGAGCAAACACA-TCTCAACTATATGTCAagtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCC-CTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa gatagacactattgggcttctcgattcagaacaacatgtcttggtatcaggaAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCCTACTGTCT---------GGAGAGCTGAGCAAACACA-TCTCAACTATATGTCAagtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCT---CCTACTGTCTGGAGAGCTGAGCAAACACAT------CTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTC-CCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCCTACTGTC---------TGGAGAGCTGAGCAAACACA-TCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTC-CCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCCTACTGTC---------TGGAGAGCTGAGCAAACACA-TCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGG---------TCTCCTACTGTCTGGAGAGCTGAGCAAACACATCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCT--CCTACT------GTCTGGAGAGCTGAGCAAACACAT-CTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCCTACT---------GTCTGGAGAGCTGAGCAAACACATCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGT-CCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctaggtGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCA-AGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGtgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGT-CCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctaggtGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATC-AAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGtgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGT-CCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTcCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAA-GGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCC-CAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCA-AGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGT-CCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCA-AGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagggGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTCGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCC-GGATATACAGCACTACATTGCTGAATACATGCAAagtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagggGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTCGGGCCTCCGGGCTCCCTCAGCAGCTCTGGC-CGGATATACAGCACTACATTGCTGAATACATGCAAagtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTCGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTCGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCG-GATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Pairagon GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTCGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCC-GGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTCGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTCGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from GeneWise GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTCGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGAC-ACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agggcgggtgtagacacaatagactgaaaagttctttctgtgtgtttcagctTCCTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCTGCATATG-TGCTGACACCTGCCTCAAGGCAGATGTGAATggtgagtaaaatctgaccaaccactgaacttgcacaaagctgcacctcatt Alignment from CESAR ctTCCTTTTCAGAAGAC-ACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agggcgggtgtagacacaatagactgaaaagttctttctgtgtgtttcagctTCCTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCTGCATAT-GTGCTGACACCTGCCTCAAGGCAGATGTGAATggtgagtaaaatctgaccaaccactgaacttgcacaaagctgcacctcatt Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggcgggtgtagacacaatagactgaaaagttctttctgtgtgtttcagCTTCCTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCTGCATATGTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagtaaaatctgaccaaccactgaacttgcacaaagctgcacctcatt Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGA-CACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggcgggtgtagacacaatagactgaaaagttctttctgtgtgtttcagCTTCCTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCTGCATATG-TGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagtaaaatctgaccaaccactgaacttgcacaaagctgcacctcatt Alignment from Pairagon CTTCCTTTTCAGAAGA-CACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggcgggtgtagacacaatagactgaaaagttctttctgtgtgtttcagCTTCCTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCTGCATATG-TGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagtaaaatctgaccaaccactgaacttgcacaaagctgcacctcatt Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggcgggtgtagacacaatagactgaaaagttctttctgtgtgtttcagCTTCCTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCTGCATATGTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagtaaaatctgaccaaccactgaacttgcacaaagctgcacctcatt Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggcgggtgtagacacaatagactgaaaagttctttctgtgtgtttcagCTTCCTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCTGCATATGTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagtaaaatctgaccaaccactgaacttgcacaaagctgcacctcatt Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggcgggtgtagacacaatagactgaaaagttctttctgtgtgtttcagCTTCCTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCTGCATATGTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagtaaaatctgaccaaccactgaacttgcacaaagctgcacctcatt #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGG-CACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCCACACAGGGCCTGTTCTGGATATAGACTGGTGTC-CCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGG-CACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCCACACAGGGCCTGTTCTGGATATAGACTGGTGTC-CCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTgGGCCACACAGGGCCTGTTCTGGATATAGACTGGTGTCC-CACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGG-CACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCCACACAGGGCCTGTTCTGGATATAGACTGGTGT-CCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGG-CACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCCACACAGGGCCTGTTCTGGATATAGACTGGTGT-CCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGT--CCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCCACACAGGGCCTGTTCTGGATATAGACTGGTGTCC---CACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGT--CCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCCACACAGGGCCTGTTCTGGATATAGACTGGTGTCC---CACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCCACACAGGGCCTGTTCTGGATATAGACTGGTGTCC-CACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAG-CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACCGTGTGGGCATTATTACCTGGCACCCTACAG-CCGAAATGTGCTTCTCGGTGCAggtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAG-CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACCGTGTGGGCATTATTACCTGGCACCCTACAG-CCGAAATGTGCTTCTCGGTGCAggtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACCGTGTGGGCATTATTACCTGGCACCCTACAGCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA-AGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACCGTGTGGGCATTATTACCTGGCACCCTACAG-CCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA-AGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACCGTGTGGGCATTATTACCTGGCACCCTACAG-CCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACCGTGTGGGCATTATTACCTGGCACCCTACAGCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACCGTGTGGGCATTATTACCTGGCACCCTACAGCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCA- tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACCGTGTGGGCATTATTACCTGGCACCCTACAGCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGC-CTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccaggcTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCTCACCTATAATGTGAGCTGGAACCACATTGGCAGCCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTG-TCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGC-CTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccaggcTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCTCACCTATAATGTGAGCTGGAACCACATTGGCAGCCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTG-TCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCTCACCTATAATGTGAGCTGGAACCACATTGGCAGCCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGC-CTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCTCACCTATAATGTGAGCTGGAACCACATTGGCAGCCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGT-CGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAG-CCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCTCACCTATAATGTGAGCTGGAACCACATTGGCAGCCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGT-CGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCTCACCTATAATGTGAGCTGGAACCACATTGGCAGCCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCTCACCTATAATGTGAGCTGGAACCACATTGGCAGCCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCTCACCTATAATGTGAGCTGGAACCACATTGGCAGCCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTT-CTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCGTAGCCGATGGAAAGGTGTTCACCACGGGTT-CAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from CESAR GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTT-CTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCGTAGCCGATGGAAAGGTGTTCACCACGG-GTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Spaln_aa2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCGTAGCCGATGGAAAGGTGTTCACCACGGGTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Spaln_nt2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTC-TAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCGTAGCCGATGGAAAGGTGTTCACCAC-GGGTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Pairagon GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTC-TAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCGTAGCCGATGGAAAGGTGTTCACCACGGG-TTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Exonerate_protein2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCGTAGCCGATGGAAAGGTGTTCACCACGGGTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Exonerate_coding2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCGTAGCCGATGGAAAGGTGTTCACCACGGGTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from GeneWise GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCGTAGCCGATGGAAAGGTGTTCACCACGGGTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAG-CCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcgttgacccttgatgtttatttcattggagGAAAACCTTGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCA-TGGGGCTCTACTGCCCTTCTATGACCCAGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaaagctgtgtgggcagcaaactaaagctgagcataatggaaagatttc Alignment from CESAR GAAAACCTTGAGGAG-CCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcgttgacccttgatgtttatttcattggagGAAAACCTTGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGC-ATGGGGCTCTACTGCCCTTCTATGACCCAGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaaagctgtgtgggcagcaaactaaagctgagcataatggaaagatttc Alignment from Spaln_aa2Genome GAAAACCTTGAGGAG-CCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcgttgacccttgatgtttatttcattggagGAAAACCTTGAGGAGcCCCATGGCTCTGCAGGAGCTGGATTCAAGCAT-GGGGCTCTACTGCCCTTCTATGACCCAGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaaagctgtgtgggcagcaaactaaagctgagcataatggaaagatttc Alignment from Spaln_nt2Genome GAAAACCTTGAGGAG-CCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcgttgacccttgatgtttatttcattggagGAAAACCTTGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGC-ATGGGGCTCTACTGCCCTTCTATGACCCAGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaaagctgtgtgggcagcaaactaaagctgagcataatggaaagatttc Alignment from Pairagon GAAAACCTTGAGGAG-CCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcgttgacccttgatgtttatttcattggagGAAAACCTTGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGC-ATGGGGCTCTACTGCCCTTCTATGACCCAGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaaagctgtgtgggcagcaaactaaagctgagcataatggaaagatttc Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcgttgacccttgatgtttatttcattggagGAAAACCTTGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCATGGGGCTCTACTGCCCTTCTATGACCCAGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaaagctgtgtgggcagcaaactaaagctgagcataatggaaagatttc Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcgttgacccttgatgtttatttcattggagGAAAACCTTGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCATGGGGCTCTACTGCCCTTCTATGACCCAGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaaagctgtgtgggcagcaaactaaagctgagcataatggaaagatttc Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcgttgacccttgatgtttatttcattggagGAAAACCTTGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCATGGGGCTCTACTGCCCTTCTATGACCCAGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaaagctgtgtgggcagcaaactaaagctgagcataatggaaagatttc #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATC-CACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCC---CACATCCCACTTCCTGAATACATTTACCAGCAAAGAAC-CCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCaggtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATC-CACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCCACTTCCTGAATACATTTACCAGCAAAGAAC-CCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCaggtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCCCACA--TCCCACTTCCTGAATACATTTACCAGCAAAGAACC-CAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCC-ACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCCC---ACATCCCACTTCCTGAATACATTTACCAGC-AAAGAACCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACAT-CCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCCC---ACATCCCACTTCCTGAATACATTTACCAGCAAAGAA-CCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCCACTTCCTGAATACATTTACCAGCAAAGAACCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCCCACATC--CCACTTCCTGAATACATTTACCAGCAAAGAACC-CAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCC---CACATCCCACTTCCTGAATACATTTACCAGCAAAGAACCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGC-CGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcaggTTGGAGGTGACACGCCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGG-GTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from CESAR gTTCGAGGTGACGCGC-CGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcaggTTGGAGGTGACACGCCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAG-GGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGC-CGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCcCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGG-TCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCC-GACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGG-GTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Pairagon GTTCGAGGTGACGCG-CCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGG-GTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from GeneWise ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcaggttggaggtgacacgcccgactcttcccgcccatcccagggatcagggacaagggtctgacgacgtgcgagtgaaccctgaggttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGC-GCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacaggcACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTCGCCTGGCGAGAGGGGCCAGCAGCACCTGCAG-TGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGC-GCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacaggcACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTCGCCTGGCGAGAGGGGCCAGCAGCACCTGCA-GTGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTCGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGTGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTG-CGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTCGCCTGGCGAGAGGGGCCAGCAGCACCTGCAG-TGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTG-CGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTCGCCTGGCGAGAGGGGCCAGCAGCACCTGCAG-TGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTCGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGTGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTCGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGTGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTCGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGTGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGAT-GTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGGCACAGTTGGGGGTGCAGCCGCGC-CTGGAAGCTGAGCTTCGTCAATGAAggtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGAT-GTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGGCACAGTTGGGGGTGCAGCCGCG-CCTGGAAGCTGAGCTTCGTCAATGAAggtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGGCACAGTTGGGGGTGCAGCCGCGCCTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGAT-GTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGGCACAGTTGGGGGTGCAGCCGCGC-CTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGAT-GTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGGCACAGTTGGGGGTGCAGCCGCGC-CTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGGCACAGTTGGGGGTGCAGCCGCGCCTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGGCACAGTTGGGGGTGCAGCCGCGCCTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGGCACAGTTGGGGGTGCAGCCGCGCCTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCC-ACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCC-ACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCC-ACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGT-GCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCC-ACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCcACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTG-CCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAG-CCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTG-CCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAG-CCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTG-CCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCC-ACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGC--CCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCA---CTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCC-ACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGC--CCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCA---CTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAA-GCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCA-CTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCT-GTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTCGTCACTGGCAATGTGGAGGGCCAGTGGT-CCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCT-GTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTCGTCACTGGCAATGTGGAGGGCCAGTGG-TCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_aa2Genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTCGTCACTGGCAATGTGGAGGGCCAGTGGTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCT-GTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTCGTCACTGGCAATGTGGAGGGCCAGTGG-TCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCT-GTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTCGTCACTGGCAATGTGGAGGGCCAGTGG-TCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_protein2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTCGTCACTGGCAATGTGGAGGGCCAGTGGTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_coding2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTCGTCACTGGCAATGTGGAGGGCCAGTGGTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTCGTCACTGGCAATGTGGAGGGCCAGTGGTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGAC-AAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagagCTCTTGGACTGTGACCAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATG-CTATGCAGCCATAAAGAATCTGggtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from CESAR agCTCTTGGATTGTGAC-AAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagagCTCTTGGACTGTGACCAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATG-CTATGCAGCCATAAAGAATCTGggtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGAC-AAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACcAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGC-TATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGAC-AAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACCAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATG-CTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Pairagon AGCTCTTGGATTGTGA-CAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACCAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATG-CTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACCAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACCAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACCAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGCACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCA-TGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGCACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATC-ATGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGcACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAT-GATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGCACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCA-TGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGCACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATC-ATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATC--AATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGCACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAT---GATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAG-ACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATC--AATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGCACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAT---GATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGCACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAA-GTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagacattttatcctacaggactcagcttggaacttttgtttcccatagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAACGTGGACCACTCTGTCTTGCTCTTGCTGGTGG-CTTTGGTAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCAAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtgagcgggtggaacagcaatggggcagaccataacgccatcttttctac Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAA-GTGGACCACTCTGTCTTG------CTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagacattttatcctacaggactcagcttggaacttttgtttcccatagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAACGTGGACCACTCTGTCTTGCTCTTGCTGG-TGGCTTTGGTAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCAAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtgagcgggtggaacagcaatggggcagaccataacgccatcttttctac Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAA-GTGGACCACTCTGTCTTGCTGGTG-----GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagacattttatcctacaggactcagcttggaacttttgtttcccatagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAcGTGGACCACTCTGTCTTGCTCTTGCTGgtGGCTTTGGTAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCAAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtgagcgggtggaacagcaatggggcagaccataacgccatcttttctac Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAA-GTGGACCACTCTGTCTTGCTGGTG-----GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagacattttatcctacaggactcagcttggaacttttgtttcccatagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAACGTGGACCACTCTGTCTTGCTCTTGCTGGTGGCTTTGGTAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCAAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtgagcgggtggaacagcaatggggcagaccataacgccatcttttctac Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAA-GTGGACCACTCTGTCTTGCTGGTG-----GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagacattttatcctacaggactcagcttggaacttttgtttcccatagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAACGTGGACCACTCTGTCTTGCTCTTGCTGGTGGCTTTGGTAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCAAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtgagcgggtggaacagcaatggggcagaccataacgccatcttttctac Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAA-GTGGACCACTCTGTCTTGCTGGTG-----GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagacattttatcctacaggactcagcttggaacttttgtttcccatagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAACGTGGACCACTCTGTCTTGCTCTTGCTGGTGGCTTTGGTAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCAAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtgagcgggtggaacagcaatggggcagaccataacgccatcttttctac Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAA-GTGGACCACTCTGTCTTGCTGGTG-----GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagacattttatcctacaggactcagcttggaacttttgtttcccatagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAACGTGGACCACTCTGTCTTGCTCTTGCTGGTGGCTTTGGTAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCAAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtgagcgggtggaacagcaatggggcagaccataacgccatcttttctac Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTG------GGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagacattttatcctacaggactcagcttggaacttttgtttcccatagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAACGTGGACCACTCTGTCTTGCTCTTGCTGGTGGCTTTGGTAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCAAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtgagcgggtggaacagcaatggggcagaccataacgccatcttttctac #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCC-AAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tagtgagtgctcagcgtggtaggttgctaggccccttgctccctccacaggtGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTGGCTCAAGAAGTACAAGGAAGTGGCCTGGATCCAGGATTTCACCACAT-GTCCAATAATGAGCAGggtgaggccagggtaaaccagaagggtgagggcacacaacctggctatggg Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCC-AAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tagtgagtgctcagcgtggtaggttgctaggccccttgctccctccacaggtGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTGGCTCAAGAAGTACAAGGAAGTGGCCTGGATCCAGGATTTCACC-ACATGTCCAATAATGAGCAGggtgaggccagggtaaaccagaagggtgagggcacacaacctggctatggg Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCC-AAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgctcagcgtggtaggttgctaggccccttgctccctccacagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTGGCTcAAGAAGTACAAGGAAGTGGCCTGGATCCAGGATTTCACCAC-ATGTCCAATAATGAGCAGGgtgaggccagggtaaaccagaagggtgagggcacacaacctggctatggg Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGC-CAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgctcagcgtggtaggttgctaggccccttgctccctccacagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTGGCTCAAGAAGTACAAGGAAGTGGCCTGGATCCAGGATTTCACCA-CATGTCCAATAATGAGCAGGgtgaggccagggtaaaccagaagggtgagggcacacaacctggctatggg Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGC-CAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgctcagcgtggtaggttgctaggccccttgctccctccacagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTGGCTCAAGAAGTACAAGGAAGTGGCCTGGATCCAGGATTTCACCACA-TGTCCAATAATGAGCAGGgtgaggccagggtaaaccagaagggtgagggcacacaacctggctatggg Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCC-AAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACC--ATGTTGTCCAATAATGAGCAGG tagtgagtgctcagcgtggtaggttgctaggccccttgctccctccacagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTGGCTCAAGAAGTACAAGGAAGTGGCCTGGATCCAGGATTTCACCACATG---TCCAATAATGAGCAGGgtgaggccagggtaaaccagaagggtgagggcacacaacctggctatggg Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCC-AAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACC--ATGTTGTCCAATAATGAGCAGG tagtgagtgctcagcgtggtaggttgctaggccccttgctccctccacagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTGGCTCAAGAAGTACAAGGAAGTGGCCTGGATCCAGGATTTCACCACATG---TCCAATAATGAGCAGGgtgaggccagggtaaaccagaagggtgagggcacacaacctggctatggg Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tagtgagtgctcagcgtggtaggttgctaggccccttgctccctccacagGTGGTCTGGCCAGTGAAAAAGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTGGCTCAAGAAGTACAAGGAAGTGGCCTGGATCCAGGATTTCACCACATGTCCAATAATGAGCAGGgtgaggccagggtaaaccagaagggtgagggcacacaacctggctatggg #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATC-CAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGG-TGTCTCTGTCCAGggtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcaaca Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATC-CAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTG-GTGTCTCTGTCCAGggtgtgtggggttggacatgtgtcaagccatggaacctgctcacctaatcc Alignment from Spaln_aa2Genome GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATC-CAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCcCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGgtgtctctgtccagggtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcaaca Alignment from Spaln_nt2Genome GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACAT-CCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGG-TGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcaaca Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACAT-CCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGG-TGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcaaca Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATC-CAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagagaagttgcaaccatttccccggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGgtgtctctgtccagggtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcaaca Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATC-CAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagagaagttgcaaccatttccccggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGgtgtctctgtccagggtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcaaca Alignment from GeneWise GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAAC-ATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTG----------------------------------------------------------------- ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGTGTCTCTGTCCAGGGTGTGTGGGGTTGGACATGTGTCAAGCCATGGAACCTGCTCACCTCAACA #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCC-CACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagagTACACTCGCCGTCTGAGCATCTTTGCCCCACAACCTGGCTCAGGCTCAAAGGCTACAGC-AGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCggtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCC-CACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagagTACACTCGCCGTCTGAGCATCTTTGCCCCACAACCTGGCTCAGGCTCAAAGGCTACAGC-AGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCggtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCC-CACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCCACAACCTGGCTCAGGCTCAAAGGCTACAGC-AGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTG-CCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCCACAACCTGGCTCAGGCTCAAAGGCTACAGC-AGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGC-CTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCCTGACAGACATTCTGATACAAGCCAAAA-GAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGC-CTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCCTGACAGACATTCTGATACAAGCCAAA-AGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCCTGACAGACATTCTGATACAAGCCAAAAGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAG-CCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCCTGACAGACATTCTGATACAAGCCAA-AAGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTT------AGGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAG-CCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCCTGACAGACATTCTGATACAAGCCAAAA-GAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTT------AGGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCCTGACAGACATTCTGATACAAGCCAAAAGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCCTGACAGACATTCTGATACAAGCCAAAAGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAGGTGAAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCCTGACAGACATTCTGATACAAGCCAAAAGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTAGGC------ATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGGCATGTgtctctccaactctggtcttgtctactagccaaccactatgggg #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTG-GAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGCGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCA-TGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTG-GAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGCGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCA-TGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGCGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTG-GAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGCGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCA-TGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTG-GAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGCGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCA-TGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTG-GAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCC--ATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGCGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCAT---GATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTG-GAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCC--ATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGCGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCAT---GATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGCGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAAC-ATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACCATTCGTGCAAATATCCGCCGGCTTCAGGCTACAG-GCCAGACGGGGGTTGCAAAGATGCATTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from CESAR GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAAC-ATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACCATTCGTGCAAATATCCGCCGGCTTCAGGCTACA-GGCCAGACGGGGGTTGCAAAGATGCATTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Spaln_aa2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACCATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGGCCAGACGGGGGTTGCAAAGATGCATTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Spaln_nt2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAAC-ATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACCATTCGTGCAAATATCCGCCGGCTTCAGGCTACAG-GCCAGACGGGGGTTGCAAAGATGCATTGCAGCTCCTGATTGAGCACTCGTGGGA---AGGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Pairagon GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAA-CATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACCATTCGTGCAAATATCCGCCGGCTTCAGGCTACAG-GCCAGACGGGGGTTGCAAAGATGCATTGCAGCTCCTGATTGAGCACTCGTGGGA---AGGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Exonerate_protein2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACCATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGGCCAGACGGGGGTTGCAAAGATGCATTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Exonerate_coding2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACCATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGGCCAGACGGGGGTTGCAAAGATGCATTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from GeneWise --------------------------------------------------GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG TCTGCACAGGCAAAGGCAGTCCACTCACACTTCTGTATCTAACTCCACAGGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACCATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGGCCAGACGGGGGTTGCAAAGATGCATTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGG-AAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagattgcagagcccaactctgtctatgcctccattctccccacccaggaATTATATTTAGTAAAGGAAATGTGTGGCAAAAACATAAGGCGCTTCTCACTTACAACTCTGC-GAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGG-AAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagattgcagagcccaactctgtctatgcctccattctccccacccaggaATTATATTTAGTAAAGGAAATGTGTGGCAAAAACATAAGGCGCTTCTCACTTACAACTCTGC-GAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGCAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGA-AAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGCAAAAACATAAGGCGCTTCTCACTTACAACTCTGC-GAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGG-AAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGCAAAAACATAAGGCGCTTCTCACTTACAACTCTGC-GAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGCAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGCAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGCAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTC-TCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtataacaaggtttcactaacacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCCTCACTTATGACGCTGCGGAATTTAGGCATGG-AAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTC-TCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtataacaaggtttcactaacacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCCTCACTTATGACGCTGCGGAATTTAGGCA-TGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCCTCACTTATGACGCTGCGGAATTTAGGCATGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTT-CTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCCTCACTTATGACGCTGCGGAATTTAGGCAT-GGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTT-CTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCCTCACTTATGACGCTGCGGAATTTAGGCAT-GGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCCTCACTTATGACGCTGCGGAATTTAGGCATGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCCTCACTTATGACGCTGCGGAATTTAGGCATGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from GeneWise --ATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCCTCACTTATGACGCTGCGGAATTTAGGCATGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAA-ACGCTCCAAAAAAggtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAA-GAAACGCTCCAAAAAAggtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAATTGCATAAAAAAAATTCTcGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAG-AAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAG-AAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCT-GAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAG-AAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAATTGCATAAAAAAAATTCTCGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCA-CAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACCAGGAGTTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCA-CAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACCAGGAGTTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACCAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCA-CAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACCAGGAGTTCCAAGCCTGGAAAAG-CCCAGGGGCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCA-CAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACCAGGAGTTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACCAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACCAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACCAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagccATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGG-AGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagccATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGA-TGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCcTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGA-GCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACT-CTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGAT-GGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACT-CTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGAT-GGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACT-CTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGAT-GGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagatGCTGAAACTACTGCAAAACGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTG-GAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAggtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from CESAR atGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagatGCTGAAACTACTGCAAAACGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTG-GAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAggtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAcGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGAGG-AAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAACGCCTGGCCT---ATGGCCAAGGTCTCTGTGACT-GGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Pairagon ATGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAACGCCTGGCCT---ATGGCCAAGGTCTCTGTGACT-GGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAACGCCTGGCCTAT---GGCCAAGGTCTCTGTGACTGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Exonerate_coding2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAACGCCTGGC--CTATGGCCAAGGTCTCTGTGACTG-GAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from GeneWise ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAACGCCTGGCCTAT---GGCCAAGGTCTCTGTGACTGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGT-GGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg cttgcacagaagccaccaaaggagggtgctgagcagctctgactctgcaggcTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTCGGTCTCTCTTTCCTGGAACTGGGTATCATAG-TGATGCTGCCATACGCTTGCTAggtgagtctagcctatggagaggacctttagccccttcttttcaagttcca Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGT-GGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg cttgcacagaagccaccaaaggagggtgctgagcagctctgactctgcaggcTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTCGGTCTCTCTTTCCTGGAACTGGGTATCATAG-TGATGCTGCCATACGCTTGCTAggtgagtctagcctatggagaggacctttagccccttcttttcaagttcca Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttgcacagaagccaccaaaggagggtgctgagcagctctgactctgcagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTCGGTCTCTCTTTCCTGGAACTGGGTATCATAGTGATGCTGCCATACGCTTGCTAGgtgagtctagcctatggagaggacctttagccccttcttttcaagttcca Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGT-GGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttgcacagaagccaccaaaggagggtgctgagcagctctgactctgcagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTCGGTCTCTCTTTCCTGGAACTGGGTATCATAG-TGATGCTGCCATACGCTTGCTAGgtgagtctagcctatggagaggacctttagccccttcttttcaagttcca Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGT-GGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttgcacagaagccaccaaaggagggtgctgagcagctctgactctgcagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTCGGTCTCTCTTTCCTGGAACTGGGTATCATAG-TGATGCTGCCATACGCTTGCTAGgtgagtctagcctatggagaggacctttagccccttcttttcaagttcca Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttgcacagaagccaccaaaggagggtgctgagcagctctgactctgcagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTCGGTCTCTCTTTCCTGGAACTGGGTATCATAGTGATGCTGCCATACGCTTGCTAGgtgagtctagcctatggagaggacctttagccccttcttttcaagttcca Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttgcacagaagccaccaaaggagggtgctgagcagctctgactctgcagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTCGGTCTCTCTTTCCTGGAACTGGGTATCATAGTGATGCTGCCATACGCTTGCTAGgtgagtctagcctatggagaggacctttagccccttcttttcaagttcca Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttgcacagaagccaccaaaggagggtgctgagcagctctgactctgcagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTCGGTCTCTCTTTCCTGGAACTGGGTATCATAGTGATGCTGCCATACGCTTGCTAGgtgagtctagcctatggagaggacctttagccccttcttttcaagttcca #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGC-TTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgccaccacccacaaaattaccatccctccttctctctttccataataggtACCCTAGGCGTGAGCCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCT-TGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGggtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from CESAR gtACCCTAGGGGTGAGC-TTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgccaccacccacaaaattaccatccctccttctctctttccataataggtACCCTAGGCGTGAGCCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACA-CCTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGggtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCCTTgTCATCGTGCAGTGTCCCTGGCGCCACACACACCTT-GAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGC-TTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACC-TTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Pairagon GTACCCTAGGGGTGAG-CTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACC-TTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAG-CTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTT--TGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTGA---GCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGAT-ATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg tccctggatttattcctgctatatatgtccctgtccgtggaaccctccagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATCATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTG-CATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAggtaaggctactagtacttcaggttaaagctccagtgaggcaaccccacct Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGAT-ATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg tccctggatttattcctgctatatatgtccctgtccgtggaaccctccagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATCATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTG-CATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAggtaaggctactagtacttcaggttaaagctccagtgaggtttgtccgttt Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGAT-ATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tccctggatttattcctgctatatatgtccctgtccgtggaaccctccagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATcATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGC-ATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaaggctactagtacttcaggttaaagctccagtgaggcaaccccacct Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGAT-ATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tccctggatttattcctgctatatatgtccctgtccgtggaaccctccagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATCATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTG-CATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaaggctactagtacttcaggttaaagctccagtgaggcaaccccacct Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGAT-ATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tccctggatttattcctgctatatatgtccctgtccgtggaaccctccagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATCATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTG-CATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaaggctactagtacttcaggttaaagctccagtgaggcaaccccacct Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGAT-ATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCA--CTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tccctggatttattcctgctatatatgtccctgtccgtggaaccctccagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATCATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGC---ATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaaggctactagtacttcaggttaaagctccagtgaggcaaccccacct Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATAT---CACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tccctggatttattcctgctatatatgtccctgtccgtggaaccctccagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGAT--CATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGC-ATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaaggctactagtacttcaggttaaagctccagtgaggcaaccccacct Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tccctggatttattcctgctatatatgtccctgtccgtggaaccctccagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATCATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaaggctactagtacttcaggttaaagctccagtgaggcaaccccacct #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCAC-TACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGG-TCTTTTCTACTTCGGGCTCAATATCGAGACAggtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCAC-TACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGG-GTCTTTTCTACTTCGGGCTCAATATCGAGACAggtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCA-CTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGG-TCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCA-CTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGG-TCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAG-CGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagtGCTGCAACCACTGATGAGGAGCCGGCAGCATTTACAGGAGATTGGTCTCTTCCACC-GGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAggtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from CESAR tGCTGCCACCACTGATGAGGAG-CGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagtGCTGCAACCACTGATGAGGAGCCGGCAGCATTTACAGGAGATTGGTCTCTTCCAC-CGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAggtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAG-CGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCCGGCAGCATTTACAGGAGATTGGTCTCTTCCACC-GGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Pairagon TGCTGCCACCACTGATGAGGAG-CGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCCGGCAGCATTTACAGGAGATTGGTCTCTTCCACC-GGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAG-CGGCAGCACCTACAGGAGGTTGGTCTCTTCCAC--CTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCG---GGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAG-CGGCAGCACCTACAGGAGGTTGGTCTCTTCCAC--CTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCG---GGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCG-GGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg actactcttgtcatggctattagcagcattaacatgttttttttccttaggaATATGCATGCCCTCTGACCATAGCCATTTCCCTCGAGGGGAAATTGAGGAAAGAACTATTGAGAACCTTGGTAATGACCACAATGCCGCTGCGCGGGGATGGATATCCCAGAAGAACCACATTGGCTT-AAAGATCTATCATACCAAAggtaactaaggagcttgaacgctcagcctttcacatttaatatacgaaaac Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCG-GGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg actactcttgtcatggctattagcagcattaacatgttttttttccttaggaATATGCATGCCCTCTGACCATAGCCATTTCCCTCGAGGGGAAATTGAGGAAAGAACTATTGAGAACCTTGGTAATGACCACAATGCCGCTGCGCGGGGATGGATATCCCAGAAGAACCACATTGGCT-TAAAGATCTATCATACCAAAggtaactaaggagcttgaacgctcagcctttcacatttaatatacgaaaac Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG actactcttgtcatggctattagcagcattaacatgttttttttccttagGAATATGCATGCCCTCTGACCATAGCCATTTCCCTCGAGGGGAAATTGAGGAAAGAACTATTGAGAACCTTGGTAATGACCACAATGCCGCTGCGCGGGGATGGATATCCCAGAAGAACCACATTGGCTTAAAGATCTATCATACCAAAGgtaactaaggagcttgaacgctcagcctttcacatttaatatacgaaaac Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCG-GGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG actactcttgtcatggctattagcagcattaacatgttttttttccttagGAATATGCATGCCCTCTGACCATAGCCATTTCCCTCGAGGGGAAATTGAGGAAAGAACTATTGAGAACCTTGGTAATGACCACAATGCCGCTGCGCGGGGATGGATATCCCAGAAGAACCACATTGGCTT-AAAGATCTATCATACCAAAGgtaactaaggagcttgaacgctcagcctttcacatttaatatacgaaaac Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCG-GGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG actactcttgtcatggctattagcagcattaacatgttttttttccttagGAATATGCATGCCCTCTGACCATAGCCATTTCCCTCGAGGGGAAATTGAGGAAAGAACTATTGAGAACCTTGGTAATGACCACAATGCCGCTGCGCGGGGATGGATATCCCAGAAGAACCACATTGGCTT-AAAGATCTATCATACCAAAGgtaactaaggagcttgaacgctcagcctttcacatttaatatacgaaaac Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG actactcttgtcatggctattagcagcattaacatgttttttttccttagGAATATGCATGCCCTCTGACCATAGCCATTTCCCTCGAGGGGAAATTGAGGAAAGAACTATTGAGAACCTTGGTAATGACCACAATGCCGCTGCGCGGGGATGGATATCCCAGAAGAACCACATTGGCTTAAAGATCTATCATACCAAAGgtaactaaggagcttgaacgctcagcctttcacatttaatatacgaaaac Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG actactcttgtcatggctattagcagcattaacatgttttttttccttagGAATATGCATGCCCTCTGACCATAGCCATTTCCCTCGAGGGGAAATTGAGGAAAGAACTATTGAGAACCTTGGTAATGACCACAATGCCGCTGCGCGGGGATGGATATCCCAGAAGAACCACATTGGCTTAAAGATCTATCATACCAAAGgtaactaaggagcttgaacgctcagcctttcacatttaatatacgaaaac Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG actactcttgtcatggctattagcagcattaacatgttttttttccttagGAATATGCATGCCCTCTGACCATAGCCATTTCCCTCGAGGGGAAATTGAGGAAAGAACTATTGAGAACCTTGGTAATGACCACAATGCCGCTGCGCGGGGATGGATATCCCAGAAGAACCACATTGGCTTAAAGATCTATCATACCAAAGgtaactaaggagcttgaacgctcagcctttcacatttaatatacgaaaac #### Dpf2_ID1304_9 --> 2 - 0 Original Alignment ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagggCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCA-CCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from CESAR ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagggCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTT-GCACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Spaln_aa2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Spaln_nt2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGC-ACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Pairagon GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTA-CCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGC-ACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Exonerate_protein2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGC--AACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAC---CTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Exonerate_coding2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGC--AACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAC---CTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from GeneWise GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat #### Dpp3_ID739_14 --> 1 - 0 Original Alignment gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATC-TACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccaggATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCCTATGTGAACTGGCTCAATATGGTTCAGGCGG-CTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from CESAR gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATC-TACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccaggATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCCTATGTGAACTGGCTCAATATGGTTCAGG-CGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Spaln_aa2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCCTATGTGAACTGGCTCAATATGGTTCAGGCGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Spaln_nt2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAAT-CTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCCTATGTGAACTGGCTCAATATGGTTCAGGC-GGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Pairagon GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAAT-CTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCCTATGTGAACTGGCTCAATATGGTTCAGGC-GGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Exonerate_protein2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCCTATGTGAACTGGCTCAATATGGTTCAGGCGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Exonerate_coding2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCCTATGTGAACTGGCTCAATATGGTTCAGGCGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from GeneWise GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCCTATGTGAACTGGCTCAATATGGTTCAGGCGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCAC-CAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCCAGAAGCAAATGCTGGCCCAGTATGTGGAAA-CTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGaggtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from CESAR GCTTATGCAGCCAACAGCCAC-CAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCCAGAAGCAAATGCTGGCCCAGTATGTGG-AAACTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGaggtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCCAGAAGCAAATGCTGGCCCAGTATGTGGAAACTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCA-CCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCCAGAAGCAAATGCTGGCCCAGTATGTGGA-AACTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Pairagon GCTTATGCAGCCAACAGCCA-CCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCCAGAAGCAAATGCTGGCCCAGTATGTGGA-AACTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCCAGAAGCAAATGCTGGCCCAGTATGTGGAAACTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCCAGAAGCAAATGCTGGCCCAGTATGTGGAAACTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCCAGAAGCAAATGCTGGCCCAGTATGTGGAAACTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt #### Drap1_ID985_5 --> 1 - 0 Original Alignment ag gGGCCGGAAACCGGGCAGCAGCGGC-AGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG aggtgaggagccaagacatggtctgcagtgtgcatttccctttgattcaggGGCCGTAAACCAGGGAGCAGTGGCCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGA-GCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from CESAR ag gGGCCGGAAACCGGGCAGCAGCGGC-AGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG aggtagaaagccaagacatggtctgcagtgtgcatttccctttgattcaggGGCCGTAAACCAGGGAGCAGTGGCCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACA-AGAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Spaln_aa2Genome AG GGGCCGGAAACCGGGCAGCAGCGGC-AGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgaggagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCcAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAG-CTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Spaln_nt2Genome AG GGGCCGGAAACCGGGCAGCAGCGGC-AGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgaggagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAG-AGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Pairagon AG GGGCCGGAAACCGGGCAGCAGCGG-CAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgaggagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAG-AGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Exonerate_protein2genome AG GGGCCGGAAACCGGGCAGCAGCGGC-AGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAG--AAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgaggagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAG---CTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Exonerate_coding2genome AG GGGCCGGAAACCGGGCAGCAGCGGC-AGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAG--AAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgaggagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAG---CTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from GeneWise AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgaggagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAG-AAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggggtgggactacagcactccacttttctgttaacacccacttgccctagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGCAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCAA-GACCATGACCACATCCCACctgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAG-AAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggggtgggactacagcactccacttttctgttaacacccacttgccctagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGCAAGGCTTGCCAGGTGACCCAGTCTCGAAATG-CAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGCAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAG-AAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGCAAGGCTTGCCAGGTGACCCAGTCTCGAAATGC-AAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAG-AAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGCAAGGCTTGCCAGGTGACCCAGTCTCGAAATG-CAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGCAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGCAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGCAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagtaAGCAATGAGGAGCTGCGACGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGG-CAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from CESAR taAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagtaAGCAATGAGGAGCTGCGACGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGG-GCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGACGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGACGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGT-GGGCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Pairagon TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGACGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGG-CAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGG--GTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGACGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGC---AGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGG--GTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGACGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGC---AGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGACGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttactatgagtactatactagacccccacaactagcctctttcctcagatATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCCGCTGTGTGGAAACCAACCGTTGTGTGGAGCCCTATG-CCAAGTGTCAGACaagtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttactatgagtactatactagacccccacaactagcctctttcctcagatATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCCGCTGTGTGGAAACCAACCGTTGTGTGGAGCCCTATG-CCAAGTGTCAGACaagtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTG---TCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACcCGCTGTGTGGAAACCAACCGTTGTGTGGAGCCCTATGCCAAGTGTCAGACAAGTGAgtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTA-CCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCCGCTGTGTGGAAACCAACCGTTGTGTGGAGCCCTATG-CCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTA-CCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCCGCTGTGTGGAAACCAACCGTTGTGTGGAGCCCTATG-CCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCCGCTGTGTGGAAACCAACCGTTGTGTGGAGCCCTATGCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCCGCTGTGTGGAAACCAACCGTTGTGTGGAGCCCTATGCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAAC-- acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCCGCTGTGTGGAAACCAACCGTTGTGTGGAGCCCTATGCCAAGTGTCAGACAAGTGAgtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagaaTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCTTAGTGAACCAGA-GGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGgtgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagaaTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCTTAGTGAACCAGA-GGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGgtgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAAcCTCCTGCTGGAGGAGCTTGTGTCCTTAGTGAACCAGAGGAA-GAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAAC-TCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCTTAGTGAACCAGA-GGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAA-CTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCTTAGTGAACCAGAGGAA-GAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCTTAGTGAACCAGAGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCTTAGTGAACCAGAGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACCTCCTGCTGGAGGAGCTTGTGTCCTTAGTGAACCAGAGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCT-GCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCAGGGCCTGTACCTCGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAAT-TGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCacgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCT-GCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCAGGGCCTGTACCTCGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAA-TTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCacgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCAGGGCCTGTACCTCGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCT-GCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCAGGGCCTGTACCTCGCCCAGATTTCACTTCGACTGCGGCAGAAGCCC-AAATTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGG---GCTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCT-GCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCAGGGCCTGTACCTCGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAAT-TGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGG---GCTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Exonerate_protein2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCAGGGCCTGTACCTCGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Exonerate_coding2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCAGGGCCTGTACCTCGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCAGGGCCTGTACCTCGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTT-GAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTACGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCC-GAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTT-GAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTACGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGC-CGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTT-GAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAcGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCG-AAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTT-GAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTACGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCC-GAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGT-TGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTACGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCC-GAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTACGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTACGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTACGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCAT-CTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCA-TGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCAT-CTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCA-TGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCATGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATC-TGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCA-TGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCAT-CTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCAT-GCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCATGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCATGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCATGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGC-AGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAG-AGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACacgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGC-AGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAG-AGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACacgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATG-CAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAG-AGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATG-CAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAG-AGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagtCTTGCTGTTCATCCTCGATGGTGTTCATGTAGCTTCTGGACAGACAG-TGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from CESAR cCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagtCTTGCTGTTCATCCTCGATGGTGTTCATGTAGCTTCTGGACAGACAG-TGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTCGATGGTGTTCATGTAGCTTCTGGACAGACAGTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTCGATGGTGTTCATGTAGCTTCTGGACAGACAG-TGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Pairagon CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTCGATGGTGTTCATGTAGCTTCTGGACAGACAG-TGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTCGATGGTGTTCATGTAGCTTCTGGACAGACAGTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTCGATGGTGTTCATGTAGCTTCTGGACAGACAGTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTCGATGGTGTTCATGTAGCTTCTGGACAGACAGTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATC-TGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCCTGGGACTCAGAGACACTCCTGAAACTGCAGG-GATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATC-TGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCCTGGGACTCAGAGACACTCCTGAAACTGCAG-GGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCCTGGGACTCAGAGACACTCCTGAAACTGCAGGGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATAT-CTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCCTGGGACTCAGAGACACTCCTGAAACTGCAGG-GATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATAT-CTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCCTGGGACTCAGAGACACTCCTGAAACTGCAGG-GATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCCTGGGACTCAGAGACACTCCTGAAACTGCAGGGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCCTGGGACTCAGAGACACTCCTGAAACTGCAGGGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCCTGGGACTCAGAGACACTCCTGAAACTGCAGGGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg tgtaccccagcatccacatttggactgctccctttcatctcctcccttagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTGTTCCTTCCTGAAGGAGACATCCTAACTGGAGATTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCCAAGACCACAG-CAGGGGTGGAGCCAAAggtgaggtcgggcaaggagttaggatacttgtatctcagaaatcctgtagg Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg tgtaccccagcatccacatttggactgctccctttcatctcctcccttagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTGTTCCTTCCTGAAGGAGACATCCTAACTGGAGATTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCCAAGACC-ACAGCAGGGGTGGAGCCAAAggtgaggtcgggcaaggagttaggatacttgtatctcagaaatcctgtagg Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAA tgtaccccagcatccacatttggactgctccctttcatctcctcccttagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTGTTCCTTCCTGAAGGAGACATCCTAACTGGAGATTCTGAGGGGAACcATTCTTACCTGGGGTCGGAGTATCTCAGATTCCAAGACCACAGCAGGGGTGGAGCCAAAGgtgaggtcgggcaaggagttaggatacttgtatctcagaaatcctgtagg Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAA-CATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG tgtaccccagcatccacatttggactgctccctttcatctcctcccttagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTGTTCCTTCCTGAAGGAGACATCCTAACTGGAGATTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCCAAGACCACA-GCAGGGGTGGAGCCAAAGgtgaggtcgggcaaggagttaggatacttgtatctcagaaatcctgtagg Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAA-CATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG tgtaccccagcatccacatttggactgctccctttcatctcctcccttagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTGTTCCTTCCTGAAGGAGACATCCTAACTGGAGATTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCCAAGACCACA-GCAGGGGTGGAGCCAAAGgtgaggtcgggcaaggagttaggatacttgtatctcagaaatcctgtagg Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACC--CCAGGCAGGGGTGGGGCCAAAG tgtaccccagcatccacatttggactgctccctttcatctcctcccttagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTGTTCCTTCCTGAAGGAGACATCCTAACTGGAGATTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCCAAGACCAC---AGCAGGGGTGGAGCCAAAGgtgaggtcgggcaaggagttaggatacttgtatctcagaaatcctgtagg Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACC--CCAGGCAGGGGTGGGGCCAAAG tgtaccccagcatccacatttggactgctccctttcatctcctcccttagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTGTTCCTTCCTGAAGGAGACATCCTAACTGGAGATTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCCAAGACCAC---AGCAGGGGTGGAGCCAAAGgtgaggtcgggcaaggagttaggatacttgtatctcagaaatcctgtagg Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG tgtaccccagcatccacatttggactgctccctttcatctcctcccttagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTGTTCCTTCCTGAAGGAGACATCCTAACTGGAGATTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCCAAGACCACAGCAGGGGTGGAGCCAAAGgtgaggtcgggcaaggagttaggatacttgtatctcagaaatcctgtagg #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGG-GATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGCGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACC-ACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGG-GATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGCGATGGAACAGTGCTGAGTGGTGGTGGGAGGGAC-CACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGCGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGG-GATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGCGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACC-ACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGG-GATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGCGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACC-ACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGCGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGC---CGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGCGA--TGGAACAGTGCTGAGTGGTGGTGGGAGGGACCA-CGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGCGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCT-GAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTCGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGA-GGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgcatgatgcaatctccaatatagGGACACACTGACGAGCTC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCT-GAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTCGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGA-GGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgatgttttcatatccacttttagGGACACACTGACGAGCTC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCT-GAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTcGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAG-GGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgcatgatgcaatctccaatatagGGACACACTGACGAGCTC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCT-GAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTT--------------------------------ATCCAGGGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTCGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGA-GGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGGTAAGGACTGCATGATGCAATCTCCAATATAGGGACACACTGACGAGCTC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCT-GAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTCGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGA-GGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgcatgatgcaatctccaatatagGGACACACTGACGAGCTC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTCGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgcatgatgcaatctccaatatagGGACACACTGACGAGCTC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTCGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgcatgatgcaatctccaatatagGGACACACTGACGAGCTC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTCGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgcatgatgcaatctccaatatagGGACACACTGACGAGCTC #### Eml3_ID2516_15 --> 0 - 0 Original Alignment TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaaagactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGCTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCC-TGATAGGCAACTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from CESAR TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaaggactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGCTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGC-CTGATAGGCAACTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Spaln_aa2Genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaaagactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGcTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCT-GATAGGCAACTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Spaln_nt2Genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaaagactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGCTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCC-TGATAGGCAACTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Pairagon TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaaagactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGCTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCC-TGATAGGCAACTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Exonerate_protein2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGC--CATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaaagactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGCTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCT---GATAGGCAACTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Exonerate_coding2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGC--CATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaaagactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGCTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCT---GATAGGCAACTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from GeneWise TTCTCCCCTGTTATCCAGGGCCACACTGAT---------------------------------GAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGGTAAAGACTGATGTTTTCATATCCACTTTTAGGGACACACTGACGAGCTCTGGGGACTGCTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCT-GATAGGCAACTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGC-ACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCCACATCAACGTGGAATTACCTGCTGCATCATTTTG-GATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGC-ACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCCACATCAACGTGGAATTACCTGCTGCATCATTTT-GGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGC-ACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCcACATCAACGTGGAATTACCTGCTGCATCATTTTGG-ATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGC-ACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCCACATCAACGTGGAATTACCTGCTGCATCATTTTG-GATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGG-CACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCCACATCAACGTGGAATTACCTGCTGCATCATTTTG-GATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGC-ACCTCGACATGGAATCACCTGCTACATCATTTT--GTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCCACATCAACGTGGAATTACCTGCTGCATCATTTTGG---ATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGC-ACCTCGACATGGAATCACCTGCTACATCATTTT--GTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCCACATCAACGTGGAATTACCTGCTGCATCATTTTGG---ATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCCACATCAACGTGGAATTACCTGCTGCATCATTTTGGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTC-TTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCT-CCTGGGGCTTTTTTTCATCGTCaggttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTC-TTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCCTTTACTTACATTTCACTGCCGGGGCTGAAGG-GCTCCTGGGGCTTTTTTTCATCGTCaggttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTT-CTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCCTTTACTTACATTTCACTGCCGGGGCTGAAGGGC-TCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTT-CTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCCTTTACTTACATTTCACTGCCGGGGCTGAAGGGC-TCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcaggTTCCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTG-CCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from CESAR gTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcaggTTCCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGCC-CGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGcTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGC-CCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTG-CCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Pairagon GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTG-CCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATT--GATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGCCCG---GACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATT--GATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGCCCG---GACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from GeneWise --------TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcaggttcctggaaagCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGCCCG-GACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGAC-CCTAAATTTCCAGATTGAACACcagtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from CESAR CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGA-CCCTAAATTTCCAGATTGAACACcagtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Spaln_aa2Genome CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCcTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACC-CTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Spaln_nt2Genome CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGAC-CCTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Pairagon CTGCAGGCAA-CCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGAC-CCTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Exonerate_protein2genome CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGC--CACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACC---CTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Exonerate_coding2genome CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGC--CACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACC---CTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from GeneWise ---------------------------CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagACCTTCTTTCTTTCCATGTGTGCTAGCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACC-CTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACC-ATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta agggatggatagggaagcagaagccactataattcttttatttgtcttagcGTCTTCCCCACACATGCCACGACACAACTATCACAAGGTGGCACCCC-AGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTtagtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from CESAR cCTCTTCCCCACC-ATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta agggatggatagggaagcagaagccactataattcttttatttgtcttagcGTCTTCCCCACACATGCCACGACACAACTATCACAAGGTGGCACCC-CAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTtagtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Spaln_aa2Genome CCTCTTCCCCACC-ATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACAcATGCCACGACACAACTATCACAAGGTGGCACCCCA-GTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Spaln_nt2Genome CCTCTTCCCCAC-CATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACACATGCCACGACACAACTATCACAAGGTGGCA-CCCCAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Pairagon CCTCTTCCCCAC-CATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACACATGCCACGACACAACTATCACAAGGTGGCACCCC-AGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Exonerate_protein2genome CCTCTTCCCCACC-ATGCCGCGGCACAACTACCACAAGGTGGCA--CCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACACATGCCACGACACAACTATCACAAGGTGGCACCCCA---GTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Exonerate_coding2genome CCTCTTCCCCACC-ATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACACATGCCACGACACAACTATCACAAGGTGGCACCCCAG-TACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACACATGCCACGACACAACTATCACAAGGTGGCACCCCAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTtagtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCAAGCACCATGCCAAACCCAACATCTTCCACAAAGACC-TGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCAAGCACCATGCCAAACCCAACATCTTCCACAAAG-ACCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCAAGCACCATGCCAAACCCAACATCTTCCACAAAGACCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCG-CCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCAAGCACCATGCCAAACCCAACATCTTCCACAAAGA-CCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCG-CCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCAAGCACCATGCCAAACCCAACATCTTCCACAAAGACCT-GATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAA--GACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCAAGCACCATGCCAAACCCAACATCTTCCACAAAGA---CCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAA--GACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCAAGCACCATGCCAAACCCAACATCTTCCACAAAGA---CCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG--------------- ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCAAGCACCATGCCAAACCCAACATCTTCCACAAAGACCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGGCAAGTAGGAGTTTTgtcccccacagctaagggggcctaatggagactga #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTGC-TCTCTTTGTTGCTGTCaggtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTGC-TCTCTTTGTTGCTGTCaggtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCcTACTCACCCTTCTATGGGGCCACTGGGACACTGCT-CTCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTC-CTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCTC-TCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGT-CCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCT-CTCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTG--CTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCT---CTCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTG--CTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCT---CTCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCTCTCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTG-TGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcaggGTGCTGGAGAGCCACTGGTTCGTGCTGGATCACACAGATGAACCACATCCCCAAGG-GATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTG-TGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcaggGTGCTGGAGAGCCACTGGTTCGTGCTGGATCACACAGATGAACCACATCCCCAAG-GGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGCTGGATCACACAGATGAACCACATCCCCAAGGGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTG-TGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGCTGGATCACACAGATGAACCACATCCCCAAGG-GATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTG-TGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGCTGGATCACACAGATGAACCACATCCCCAAGG-GATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGCTGGATCACACAGATGAACCACATCCCCAAGGGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGCTGGATCACACAGATGAACCACATCCCCAAGGGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGCTGGATCACACAGATGAACCACATCCCCAAGGGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAG-CAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACCGGCAGGTTTTAGTACTCTATACCAAGC-TCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from CESAR TGCCCTCCAGGAATGAAG-CAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACCGGCAGGTTTTAGTACTCTATACCAAGC-TCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACCGGCAGGTTTTAGTACTCTATACCAAGCTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATG-AAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACCGGCAGGTTTTAGTACTCTATACCAAGC-TCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Pairagon TGCCCTCCAGGAATGAAG-CAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACCGGCAGGTTTTAGTACTCTATACCAAGC-TCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACCGGCAGGTTTTAGTACTCTATACCAAGCTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACCGGCAGGTTTTAGTACTCTATACCAAGCTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACCGGCAGGTTTTAGTACTCTATACCAAGCTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTG-TATGGAACCCCAGCTGATGCAGacgtatgtgtcctctcactttgcagaactaaccatgctgtagctcacggctt Alignment from CESAR ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTG-TATGGAACCCCAGCTGATGCAGacgtatgtgtcctctcactttgcagaactaaccatgctgtaatcttcatttc Alignment from Spaln_aa2Genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTcGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGT-ATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtagctcacggctt Alignment from Spaln_nt2Genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGT-ATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtagctcacggctt Alignment from Pairagon ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGT-ATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtagctcacggctt Alignment from Exonerate_protein2genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGT--GTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGT---ATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtagctcacggctt Alignment from Exonerate_coding2genome ACTGCTGCTGTTGC---TCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTT--CGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGT-ATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtagctcacggctt Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTCGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtagctcacggctt #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAG-GAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagcTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGCGAAATGGTCGTCTTCATACTCGCAGAACAGAGGG-GCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAG-GAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagcTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGCGAAATGGTCGTCTTCATACTCGCAGAACAGAGG-GGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGCGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAG-GAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGCGAAATGGTCGTCTTCATACTCGCAGAACAGA-GGGGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAG-GAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGCGAAATGGTCGTCTTCATACTCGCAGAACAGAGGG-GCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGCGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGCGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGCGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTC-TTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt atggtgcctgactggaaagttcccctcaacatcttattcttcatgcctagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCCTTGAGAAACCTGGAGGAAAGAAACTATACGGAGAACAAACCTT-CTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTgtgtaaccgtccactctgtaagtggcatctccccagccaggagttggtgtca Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTC-TTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt atggtgcctgactggaaagttcccctcaacatcttattcttcatgcctagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCCTTGAGAAACCTGGAGGAAAGAAACTATACGGAGAACAAACCTT-CTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTgtgtaaccgtccactctgtaagtggcatctccccagccaggagttggtgtca Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTC-TTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atggtgcctgactggaaagttcccctcaacatcttattcttcatgcctagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCcTTGAGAAACCTGGAGGAAAGAAACTATACGGAGAACAAACCTTC-TGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtaaccgtccactctgtaagtggcatctccccagccaggagttggtgtca Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGT-CTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atggtgcctgactggaaagttcccctcaacatcttattcttcatgcctagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCCTTGAGAAACCTGGAGGAAAGAAACTATACGGAGAACAAACCTTC-TGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtaaccgtccactctgtaagtggcatctccccagccaggagttggtgtca Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGT-CTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atggtgcctgactggaaagttcccctcaacatcttattcttcatgcctagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCCTTGAGAAACCTGGAGGAAAGAAACTATACGGAGAACAAACCTT-CTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtaaccgtccactctgtaagtggcatctccccagccaggagttggtgtca Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTC-TTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCT--TCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atggtgcctgactggaaagttcccctcaacatcttattcttcatgcctagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCCTTGAGAAACCTGGAGGAAAGAAACTATACGGAGAACAAACCTTC---TGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtaaccgtccactctgtaagtggcatctccccagccaggagttggtgtca Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTC-TTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCT--TCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atggtgcctgactggaaagttcccctcaacatcttattcttcatgcctagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCCTTGAGAAACCTGGAGGAAAGAAACTATACGGAGAACAAACCTTC---TGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtaaccgtccactctgtaagtggcatctccccagccaggagttggtgtca Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atggtgcctgactggaaagttcccctcaacatcttattcttcatgcctagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCCTTGAGAAACCTGGAGGAAAGAAACTATACGGAGAACAAACCTTCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtaaccgtccactctgtaagtggcatctccccagccaggagttggtgtca #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACT-GACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagaGATCTAGAAGAAGATCCATTATTTACTCGATATTTCACCAGACAACACTCTGCCCAACC-AGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACT-GACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagaGATCTAGAAGAAGATCCATTATTTACTCGATATTTCACCAGACAACACTCTGCCCAACC-AGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTCGATATTTCACCAGACAACACTCTGCCCAACCAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACT-GACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTCGATATTTCACCAGACAACACTCTGCCCAACC-AGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACT-GACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTCGATATTTCACCAGACAACACTCTGCCCAACC-AGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTCGATATTTCACCAGACAACACTCTGCCCAACCAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTCGATATTTCACCAGACAACACTCTGCCCAACCAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTCGATATTTCACCAGACAACACTCTGCCCAACCAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAA-GTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAACGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATG-GGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAggtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAA-GTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAACGCTGTGCTTCTTGCAGGCTCACCACTGGAAGAT-GGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAggtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAACGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTC-GTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAACGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATG-GGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAA-GTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAACGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATG-GGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAACGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAACGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAACGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGG-CTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagaCTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGC-GCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGG-CTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagaCTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAG-CGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGG-CTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGC-GCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGG-CTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGC-GCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCC-AGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from CESAR GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCC-AGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCC-AGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCC-AGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from GeneWise CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgCAGGAAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTG-CTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagtgAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCCTACATGCACCCCCAAAGCTCCTGCATC-GCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGaggtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTG-CTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagtgAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCCTACATGCACCCCCAAAGCTCCTGCAT-CGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGaggtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCCTACATGCACCCCCAAAGCTCCTGCATCGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGC-TGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCCTACATGCACCCCCAAAGCTCCTGCATC-GCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTG-CTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCCTACATGCACCCCCAAAGCTCCTGCATC-GCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCCTACATGCACCCCCAAAGCTCCTGCATCGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCCTACATGCACCCCCAAAGCTCCTGCATCGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCCTACATGCACCCCCAAAGCTCCTGCATCGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAG-CTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttaggGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAG-GCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAG-CTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttaggGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCA-GGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAG-CTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGcCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGG-CTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGC-TGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAG-GCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAG-CTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAG-GCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAG-CTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCA--GAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGG---CTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCT---GCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGG--CCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGG-CTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAA-AAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGG-CTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAG-GAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagacTCTCAGGTGGATGACATGGATGTTGACTTAGATAAACGAGTTTCTCCAAGACTTGAAGGAGCTCAAGG-TCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGaggtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAG-GAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagacTCTCAGGTGGATGACATGGATGTTGACTTAGATAAACGAGTTTCTCCAAGACTTGAAGGAGCTCAAGG-TCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGaggtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAACGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGAT-AAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAACGAGTTTCTCCAAGACTTGAAGGAGCTCAAGG-TCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAG-GAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAACGAGTTTCTCCAAGACTTGAAGGAGCTCAAGG-TCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAACGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAACGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAACGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagcCTGGTGTGCACTCGCCCTCCGGGGAAAGCTCGGTGTCTTCT-TGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from CESAR cCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagcCTGGTGTGCACTCGCCCTCCGGGGAAAGCTCGGTGTCTTC-TTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Spaln_aa2Genome CCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTcGCCCTCCGGGGAAAGCTCGGTGTCTTCTT-GAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Spaln_nt2Genome CCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTCGCCCTCCGGGGAAAGCTCGGTGTCTTCT-TGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Pairagon CCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTCGCCCTCCGGGGAAAGCTCGGTGTCTTCT-TGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTCGCCCTCCGGGGAAAGCTCGGTGTCTTCTTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTCGCCCTCCGGGGAAAGCTCGGTGTCTTCTTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTCGCCCTCCGGGGAAAGCTCGGTGTCTTCTTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATTTTCTCCCTTG-CACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATTTTCTCCCTT-GCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATTTTCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTAC-CACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATTTTCTCCCTT-GCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATTTTCTCCCTT-GCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATTTTCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATTTTCTCC-CTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATTTTCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAG-AGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGCAGTGGGCTGAATGCAATGGAGTGTGCAC-GCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from CESAR AAACCAGACCGTGATGACTGGGAG-AGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGCAGTGGGCTGAATGCAATGGAGTGTGCA-CGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGCAGTGGGCTGAATGCAATGGAGTGTGCACGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAG-AGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGCAGTGGGCTGAATGCAATGGAGTGTGCAC-GCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCatgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Pairagon AAACCAGACCGTGATGACTGGGAG-AGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGCAGTGGGCTGAATGCAATGGAGTGTGCAC-GCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGCAGTGGGCTGAATGCAATGGAGTGTGCACGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGCAGTGGGCTGAATGCAATGGAGTGTGCACGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGCAGTGGGCTGAATGCAATGGAGTGTGCACGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGAT-GAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATCGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTT-TGACAGCAAGCCTTATggtaatcgattgggcaagaccaaagagaagtgcccactccatttgtcaccc Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGAT-GAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATCGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCT-TTGACAGCAAGCCTTATggtaatcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccg Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGAT-GAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATcGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTT-GACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcccactccatttgtcaccc Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGAT-GAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATCGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTT-TGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcccactccatttgtcaccc Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGAT-GAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATCGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTT-TGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcccactccatttgtcaccc Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATCGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTTGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcccactccatttgtcaccc Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATCGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTTGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcccactccatttgtcaccc Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTAT--------------------------------------------------- ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATCGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTTGACAGCAAGCCTTATGGTAATCGATTGGGCAAGACCAAAGAGAAGTGCCCACTCCATTTGTCACCC #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACT-TGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagggACCCAGGCATTGCCCCCACTCTCCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGC-TGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACT-TGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagggACCCAGGCATTGCCCCCACTCTCCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGC-TGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACT-TGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCcTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTGAT-CACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACT-TGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGC-TGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCA-CTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGC-TGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTC-ACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgttgtcccctttttctccccccctacatttccctctcaaatggttgtagGGTTCAGCTCCTAATCTTTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCCACCATGTTGAAGGATGCAGTGCATTATGGAGGCTGGGAGC-CCGGGACATCCATAACTTCTATGGCTTATATGTGgtagcaaactggagaggaagttgacagacaaaggggaaggcagtaaggca Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTC-ACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgttgtcccctttttctccccccctacatttccctctcaaatggttgtagGGTTCAGCTCCTAATCTTTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCCACCATGTTGAAGGATGCAGTGCATTATGGAGGCTGGGAG-CCCGGGACATCCATAACTTCTATGGCTTATATGTGgtagcaaactggagaggaagttgacagacaaaggggaaggcagtaaggca Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTC-ACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgttgtcccctttttctccccccctacatttccctctcaaatggttgtagGGTTCAGCTCCTAATCTTTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCcACCATGTTGAAGGATGCAGTGCATTATGGAGGCTGGGAGCC-CGGGACATCCATAACTTCTATGGCTTATATGTGgtagcaaactggagaggaagttgacagacaaaggggaaggcagtaaggca Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGT-CACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgttgtcccctttttctccccccctacatttccctctcaaatggttgtagGGTTCAGCTCCTAATCTTTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCCACCATGTTGAAGGATGCAGTGCATTATGGAGGCTGGGAGC-CCGGGACATCCATAACTTCTATGGCTTATATGTGgtagcaaactggagaggaagttgacagacaaaggggaaggcagtaaggca Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGT-CACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgttgtcccctttttctccccccctacatttccctctcaaatggttgtagGGTTCAGCTCCTAATCTTTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCCACCATGTTGAAGGATGCAGTGCATTATGGAGGCTGGGAGC-CCGGGACATCCATAACTTCTATGGCTTATATGTGgtagcaaactggagaggaagttgacagacaaaggggaaggcagtaaggca Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTC-ACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAG--CACCGGGACATCCATAACATCTATGGCTTATATGTG tgttgtcccctttttctccccccctacatttccctctcaaatggttgtagGGTTCAGCTCCTAATCTTTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCCACCATGTTGAAGGATGCAGTGCATTATGGAGGCTGGGAGCC---CGGGACATCCATAACTTCTATGGCTTATATGTGgtagcaaactggagaggaagttgacagacaaaggggaaggcagtaaggca Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTC-ACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAG--CACCGGGACATCCATAACATCTATGGCTTATATGTG tgttgtcccctttttctccccccctacatttccctctcaaatggttgtagGGTTCAGCTCCTAATCTTTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCCACCATGTTGAAGGATGCAGTGCATTATGGAGGCTGGGAGCC---CGGGACATCCATAACTTCTATGGCTTATATGTGgtagcaaactggagaggaagttgacagacaaaggggaaggcagtaaggca Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAG-GTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG tgttgtcccctttttctccccccctacatttccctctcaaatggttgtagGGTTCAGCTCCTAATCTTTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCCACCATGTTGAAGGATGCAGTGCATTATGGAGGCTGGGAGCC-CGGGACATCCATAACTTCTATGGCTTATATGTGgtagcaaactggagaggaagttgacagacaaaggggaaggcagtaaggca #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCT-GATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTCGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCT-TGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from CESAR CACATGGCGACTGCT-GATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTCGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTC-CCTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Spaln_aa2Genome CACATGGCGACTGCT-GATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTcGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTT-GTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Spaln_nt2Genome CACATGGCGACTGCT-GATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTCGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCC-TTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Pairagon CACATGGCGACTGCT-GATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTCGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCC-TTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Exonerate_protein2genome CACATGGCGACTGCT-GATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCC--TTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTCGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTT---GTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Exonerate_coding2genome CACATGGCGACTGCTGA---TGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCT--CGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTT-GTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTCGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcaggtGACGCACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATT-GCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from CESAR gtGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcaggtGACGCACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTT-ATTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Spaln_aa2Genome GTGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTcCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATTG-CCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTC-ACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTA-TTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Pairagon GTGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTA-TTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Exonerate_protein2genome GTGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Exonerate_coding2genome GTGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from GeneWise GTGATGCACTCCTT-ATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATTG-CCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGC-TATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCCTATCAGAAACATCATGGGCCCCAAACCTTGT-TCTGCCAGTAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from CESAR GTGTGGTATGACATTCAGAGC-TATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCCTATCAGAAACATCATGGGCCCCAAACCTTGT-TCTGCCAGTAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGC-TATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCcTATCAGAAACATCATGGGCCCCAAACCTTGTT-CTGCCAGTAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAG-CTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCCTATCAGAAACATCATGGGCCCCAAACCTTGT-TCTGCCAGTAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Pairagon GTGTGGTATGACATTCAGAG-CTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCCTATCAGAAACATCATGGGCCCCAAACCTTGT-TCTGCCAGTAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCCTATCAGAAACATCATGGGCCCCAAACCTTGTTCTGCCAGTAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCCTATCAGAAACATCATGGGCCCCAAACCTTGTTCTGCCAGTAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCCTATCAGAAACATCATGGGCCCCAAACCTTGTTCTGCCAGTAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAG-CGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGA-GCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from CESAR ATCCCCGTGTTCCAG-CGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTG-AGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAG-CGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGcCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAG-CGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAG-CGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGA-GCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Pairagon ATCCCCGTGTTCCAG-CGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGA-GCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAG-CGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTG--AGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAG---CGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCG---TGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAG--CCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAG-CGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from GeneWise ----CCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAG-CGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCT-CGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagtaactgtaaaagattttgtgtgtttcaagtgtcttctctttcttagctGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCCTGTCTCCTGCCAGATCCATGGGAAT-AATTGAAATTAAAAACAAAAAAAAGgtgagagaagtgaatccatatagacctccagtgggttgtcccctctagaa Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCT-CGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagtaactgtaaaagattttgtgtgtttcaagtgtcttctctttcttagctGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCCTGTCTCCTGCCAGATCCATGGGAA-TAATTGAAATTAAAAACAAAAAAAAGgtgagagaagtgaatccatatagacctccagtgggttgtcccctctagaa Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagtaactgtaaaagattttgtgtgtttcaagtgtcttctctttcttagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATAATTGAAATTAAAAACAAAAAAAAGgtgagagaagtgaatccatatagacctccagtgggttgtcccctctagaa Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCT-CGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagtaactgtaaaagattttgtgtgtttcaagtgtcttctctttcttagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCCTGTCTCCTGCCAGATCCATGGGAA-TAATTGAAATTAAAAACAAAAAAAAGgtgagagaagtgaatccatatagacctccagtgggttgtcccctctagaa Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCT-CGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagtaactgtaaaagattttgtgtgtttcaagtgtcttctctttcttagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCCTGTCTCCTGCCAGATCCATGGGAA-TAATTGAAATTAAAAACAAAAAAAAGgtgagagaagtgaatccatatagacctccagtgggttgtcccctctagaa Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagtaactgtaaaagattttgtgtgtttcaagtgtcttctctttcttagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATAATTGAAATTAAAAACAAAAAAAAGgtgagagaagtgaatccatatagacctccagtgggttgtcccctctagaa Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagtaactgtaaaagattttgtgtgtttcaagtgtcttctctttcttagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATAATTGAAATTAAAAACAAAAAAAAGgtgagagaagtgaatccatatagacctccagtgggttgtcccctctagaa Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagtaactgtaaaagattttgtgtgtttcaagtgtcttctctttcttagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATAATTGAAATTAAAAACAAAAAAAAGgtgagagaagtgaatccatatagacctccagtgggttgtcccctctagaa #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTCTACAGC-CGAGGAGACACCATCTAACcggtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from CESAR GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTCTACAG-CCGAGGAGACACCATCTAACcggtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccaggtagaagATT------TTCGTGGACCCCAATGGCAAGATCTCTCTACAGCC-GAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Spaln_nt2Genome GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTCTACAGC-CGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Pairagon GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTCTACAGC-CGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTCTACAGCCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTCTACAGCCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from GeneWise agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccaggtagaagattttcgtggaccccaatggcaagatctctctacagccgaggagacaccatctaaccggtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAACATGATCACAGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from CESAR CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAACATGATCACAGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAcATGATCACAGAAAGCAAGTTCCTCCAGCTGGA-TCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Spaln_nt2Genome CAATGTGACCCAG-AAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAACATGATCACAGAAAGCAAGTTCCTCCAGCTGGA-TCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Pairagon CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAACATGATCACAGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAACATGATCACAGAAAGCAAGTTCCTCCAGCTGGATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAACATGATCACAGAAAGCAAGTTCCTCCAGCTGGATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAACATGATCACAGAAAGCAAGTTCCTCCAGCTGGATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCAT-GGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTATACACGGACCATCGGAAGGCCTGGCAAAATACATCGGTCAGCCACAG-TGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCAT-GGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTATACACGGACCATCGGAAGGCCTGGCAAAATACATCGGTCAGCCACA-GTGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTATACACGGACCATCGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGTGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCAT-GGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTATACACGGACCATCGGAAGGCCTGGCAAAATACATCGGTCAGCCACAG-TGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCAT-GGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTATACACGGACCATCGGAAGGCCTGGCAAAATACATCGGTCAGCCACAG-TGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTATACACGGACCATCGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGTGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTATACACGGACCATCGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGTGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTATACACGGACCATCGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGTGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCA-CTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTGTAGAGTCACCTGTCCTTCATTGTCCGAGATGCTGCCCACA-CACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCA-CTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTGTAGAGTCACCTGTCCTTCATTGTCCGAGATGCTGCCCAC-ACACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTGTAGAGTCACCTGTCCTTCATTGTCCGAGATGCTGCCCACACACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCA-CTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTGTAGAGTCACCTGTCCTTCATTGTCCGAGATGCTGCCCACA-CACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCA-CTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTGTAGAGTCACCTGTCCTTCATTGTCCGAGATGCTGCCCACA-CACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTGTAGAGTCACCTGTCCTTCATTGTCCGAGATGCTGCCCACACACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACT---GTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTGTAGAGTCA--CCTGTCCTTCATTGTCCGAGATGCTGCCCACAC-ACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTGTAGAGTCACCTGTCCTTCATTGTCCGAGATGCTGCCCACACACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcaggaATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATG-TCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcaggaATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCAT-GTCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGcATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGT-CTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATG-TCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATG-TCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCAT--GACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGT---CTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCAT--GACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGT---CTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTA-CGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGT-CTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAG-CTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGA-GGAAGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAG-CTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGG-AGGAAGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGAGGAAGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAG-CTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGA-GGAAGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAG-CTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGA-GGAAGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGAGGAAGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGAGGAAGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGAGGAAGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTG-TCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGCTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAG-CTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from CESAR GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTG-TCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGCTCCACCTTTGCTGCCCTGTGGCTCACTATCCTA-GCTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGCTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGCTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTG-TCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGCTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAG-CTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Pairagon GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTG-TCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGCTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAG-CTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGCTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGCTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTC---CACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTG--CTCCACCTTTGCTGCCCTGTGGCTCACTATCCT-AGCTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGCTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGCTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATC-CCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCCGAGTCTCTGAAGAACATGCTGCTGGTGA-GGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from CESAR TCAGAAGCTATCCCC-GAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCCGAGTCTCTGAAGAACATGCTGCTGGTG-AGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagtcag---AAGCTATCCCCCGAGTCTCTGAAGAACATGCTGCTGGTGAG-GACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Spaln_nt2Genome TCAGAAGCTATCCCC-GAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCCGAGTCTCTGAAGAACATGCTGCTGGTGA-GGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Pairagon TCAGAAGCTAT-CCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCCGAGTCTCTGAAGAACATGCTGCTGGTGA-GGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCCGAGTCTCTGAAGAACATGCTGCTGGTGAGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCCGAGTCTCTGAAGAACATGCTGCTGGTGAGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCCGAGTCTCTGAAGAACATGCTGCTGGTGAGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat #### Gbf1_ID9819_38 --> 2 - 1 Original Alignment acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGT-GACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagacCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCCGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATAC-CTCGGAAATGGGGGTTTGTggtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from CESAR acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGT-GACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagacCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCCGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATAC-CTCGGAAATGGGGGTTTGTggtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Spaln_aa2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGT-GACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCcGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCTCG-GAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Spaln_nt2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGT-GACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCCGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACC-TCGGAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Pairagon ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGG-TGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCCGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATA-CCTCGGAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Exonerate_protein2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGT-GACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCC--TCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCCGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCTCG---GAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Exonerate_coding2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGT-GACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCC--TCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCCGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCTCG---GAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from GeneWise ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCT-GGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTT gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCCGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCTCGGAAATGGGGGTTTgtggtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagtTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAAACTGGAGAACCAAG-CATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from CESAR cTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagtTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAAACTGGAGAACCAA-GCATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAAACTGGAGAACCAAGCATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Spaln_nt2Genome CTATCACTCAG-AAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAAACTGGAGAACCAAG-CATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Pairagon CTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAAACTGGAGAACCAAG-CATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAAACTGGAGAACCAAGCATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAAACTGGAGAACCAAGCATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAAACTGGAGAACCAAGCATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGC-TACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCCTACTGGGATGCAGAGAAGAGAGGACTGGACCTCCAGGGTT-TCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGC-TACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCCTACTGGGATGCAGAGAAGAGAGGACTGGACCTCCAGGGTT-TCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGC-TACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCcTACTGGGATGCAGAGAAGAGAGGACTGGACCTCCA-GGGTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTG-CTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCCTACTGGGATGCAGAGAAGAGAGGACTGGACCTCCAGGGTTT-CTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTG-CTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCCTACTGGGATGCAGAGAAGAGAGGACTGGACCTCCAGGGTTT-CTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGC-TACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTC--CTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCCTACTGGGATGCAGAGAAGAGAGGACTGGACCTCCAGGGTTTCTG---AATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGC-TACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTC--CTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCCTACTGGGATGCAGAGAAGAGAGGACTGGACCTCCAGGGTTTCTG---AATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCCTACTGGGATGCAGAGAAGAGAGGACTGGACCTCCAGGGTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGA-ATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGACATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCT-CTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from CESAR AGCACCAGTCGA-ATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGACATCCTCAATGGGCAGGTTTTCGGCTCCCGATCC-TCTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Spaln_aa2Genome CCAGT---CGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagagCACCAGTCGACATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTC-TTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Spaln_nt2Genome AGCACCAGTCGA-ATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGACATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCT-CTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Pairagon AGCACCAGTCGA-ATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGACATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCT-CTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGACATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTCTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGACATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTCTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from GeneWise --ACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagagCACCAGTCGACATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTC-TTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTC---TTTTGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGC-CCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGC-CCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTGAG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGcCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCACAGG---ATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCC-ACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCT---TTTGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGG-CCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCT---TTTGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGG-CCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTAGGGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATG-CTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATG-CTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCT-TTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATG-CTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTT-TTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTCTTACTGGTGAATGTACTGTGTGCAGTGCTGT-ACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTT-TTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTCTTACTGGTGAATGTACTGTGTGCAGTGCTG-TACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTCTTACTGGTGAATGTACTGTGTGCAGTGCTGTACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTT-TTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTCTTACTGGTGAATGTACTGTGTGCAGTGCTGT-ACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTT-TTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTCTTACTGGTGAATGTACTGTGTGCAGTGCTGTA-CGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTCTTACTGGTGAATGTACTGTGTGCAGTGCTGTACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Exonerate_coding2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTCTTACTGGTGAATGTACTGTGTGCAGTGCTGTACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTCTTACTGGTGAATGTACTGTGTGCAGTGCTGTACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGA-TATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagatACATCAGATCTCCACTTCCAAATTAGCAAAGACCGACTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTA-CCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGA-TATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagatACATCAGATCTCCACTTCCAAATTAGCAAAGACCGACTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTA-CCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGA-TATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGAcTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTAC-CTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGA-TATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGACTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTA-CCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGA-TATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGACTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTA-CCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGACTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGACTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGACTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagtgGGTGGGCAGCGCCGAGGCTACCGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGT-TGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagtgGGTGGGCAGCGCCGAGGCTACCGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAG-TTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG--------- atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACcGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTTGGAAACAGAGGGGTACCTGCAGgtctccttctactcctccctctgggctgtgaagggtttga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTA-CGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACCGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGT-TGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTA-CGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACCGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGT-TGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACCGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACCGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG--------- atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACCGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTTGGAAACAGAGGGGTACCTGCAGgtctccttctactcctccctctgggctgtgaagggtttga #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACT-GCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTCGCACCCAGCAGAGGAGGACCACACCTACCCCAGC-CCTACAGGACCAAGCCCAGAAACTTATGaagtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACT-GCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTCGCACCCAGCAGAGGAGGACCACACCTACCCCAG-CCCTACAGGACCAAGCCCAGAAACTTATGaagtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTCGCACCCAGCAGAGGAGGACCACACCTACCCCAGCCCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACT-GCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTCGCACCCAGCAGAGGAGGACCACACCTACCCCAGC-CCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACT-GCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTCGCACCCAGCAGAGGAGGACCACACCTACCCCAGC-CCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACT-GCACCCAGCAGAGGAGGACCGCACCTGCCCCAG--CACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTCGCACCCAGCAGAGGAGGACCACACCTACCCCAGCC---CTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACT-GCACCCAGCAGAGGAGGACCGCACCTGCCCCAG--CACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTCGCACCCAGCAGAGGAGGACCACACCTACCCCAGCC---CTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTCGCACCCAGCAGAGGAGGACCACACCTACCCCAGCCCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGC-CAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCT-TGTCCCTGCCAGGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from CESAR AGGAGACCCAAGAGCAGC-CAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACC-TTGTCCCTGCCAGGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Spaln_aa2Genome GACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagaggagACCCAAAAGCAGCCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTT-GTCCCTGCCAGGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCC-AAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCT-TGTCCCTGCCAGGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Pairagon AGGAGACCCAAGAGCAG-CCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTT-GTCCCTGCCAGGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTTGTCCCTGCCAGGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Exonerate_coding2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTTGTCCCTGCCAGGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from GeneWise GACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagaggagACCCAAAAGCAGCCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTT-GTCCCTGCCAGGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagcCAGGGTGCAAGCACCCTGTGCCCTCGCAGACCTCCTC---------CTCCTGGTGCAGGACC-TCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagcCAGGGTGCAAGCACCCTGTGCCCTCGCAGACCTCCTC---------CTCCTGGTGCAGGACC-TCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCTCGCAGACCTCCTCCT---------CCTGGTGCAGGACCTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCC-CGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCTCGCAGACCTCC---------TCCTCCTGGTGCAGGACCT-CAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCC-CGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCTCGCAGACCTCC---------TCCTCCTGGTGCAGGACCT-CAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTC--CAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttTTCTTTAGCCAGGGTGCAAGCACCCTGTGCCCTCGCAGACCTCCTCCTCCTGGTGCAGGAC---CTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCT--CGCAGACCT------CCTCCTCCTGGTGCAGGACCT-CAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCTCGCAGACCTCCTCCTCCT---------GGTGCAGGACCTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAG-CAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCCAGCAACCGCAGGAGGAGCAGGCAAAGAAAG-TAAGGAGGTGGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAG-CAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCCAGCAACCGCAGGAGGAGCAGGCAAAGAAA-GTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAG-CAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCCAGCAACCGCAGGAGGAGCAGGCAAAG-AAAGTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAG-CAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCCAGCAACCGCAGGAGGAGCAGGCAAAGAAAG-TAAGGAGGTGGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccaggGAGATGCAGGAGAGAGAGAAAGCCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAAC-GGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccaggGAGATGCAGGAGAGAGAGAAAGCCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAA-CGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCcTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACG-GGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAG-CCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAAC-GGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCC-TGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAAC-GGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from GeneWise ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagggagatgcaggagagagagaaagcccttgcgactccaaaaggaacgacttcagaaggaacgggggagaagaagcggaaggtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATT-ATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacaggtCGGCGCAACCTAAGGTTAATTCATGGAATATTTACCTTATGGAAGTCTACGAG-CTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from CESAR gtCGGCGCAACCTAAGATTAATT-ATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacaggtCGGCGCAACCTAAGGTTAATTCATGGAATATTTACCTTATGGAAGTCTACGA-GCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTCATGGAATATTTACCTTATGGAAGTCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATT-ATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTCATGGAATATTTACCTTATGGAAGTCTACGAG-CTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Pairagon GTCGGCGCAACCTAAGATTAATT-ATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTCATGGAATATTTACCTTATGGAAGTCTACGAG-CTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTCATGGAATATTTACCTTATGGAAGTCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTCATGGAATATTTACCTTATGGAAGTCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTCATGGAATATTTACCTTATGGAAGTCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagtGAGATCAGTGAAATCACTAGTATCAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCA-CAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagtGAGATCAGTGAAATCACTAGTATCAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCTC-ACAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAAcGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCAC-AATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCA-CAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCA-CAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTC--ATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCAC---AATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAA---AGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAG--AAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCAC-AATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCACAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGAT-CTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccaggcTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAA-CATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCaagtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGAT-CTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccaggcTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAA-CATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCaagtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGAT-CTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATcCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAAC-ATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGAT-CTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCCTTGGCCTCCTATCCTACCGAAGTTACTGGT-CCCAAACATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGAT-CTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAA-CATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGAT-CTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACC--ATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACATC---TTGGAGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCT---TGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGAT--CCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAAC-ATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGAT-CTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACATC-TTGGAGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGGATTACAACATAGCCTGCCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCA-GCTGCTTATTGAGTTCagtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGGATTACAACATAGCCTGCCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACG-GCAGCTGCTTATTGAGTTCagtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTG-ACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGGATTACAACATAGCCTGCCATCTTaACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAG-CTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGGATTACAACATAGCCTGCCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCA-GCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATGTGGCCTG-CATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGGATTACAACATAGCCTGCCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGC-AGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGGATTACAACATAGCCTGCCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAGCTGCTTATTGAGTTCAGtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGGATTACAACATAGCCTGCCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAGCTGCTTATTGAGTTCAGtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGC-ATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTG ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGGATTACAACATAGCCTGCCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAGCTGCTTATTGAgttcagtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCG-TGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gtgcaccacactacttaactgctaccatcatgctcttttctccctctcagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCGCCTTAAGCCGCTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACACTACCCG-CCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtaagcggggtcttgggaggtggcccatccagagcaccctcactggtgcc Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCG-TGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gtgcaccacactacttaactgctaccatcatgctcttttctccctctcagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCGCCTTAAGCCGCTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACACTACCCG-CCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtaagcggggtcttgggaggtggcccatccagagcaccctcactggtgcc Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCG-TGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gtgcaccacactacttaactgctaccatcatgctcttttctccctctcagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCGCCTTAAGCCGcTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACACTACCCGC-CTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtaagcggggtcttgggaggtggcccatccagagcaccctcactggtgcc Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCG-TGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gtgcaccacactacttaactgctaccatcatgctcttttctccctctcagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCGCCTTAAGCCGCTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACACTA-CCCGCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtaagcggggtcttgggaggtggcccatccagagcaccctcactggtgcc Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCG-TGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gtgcaccacactacttaactgctaccatcatgctcttttctccctctcagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCGCCTTAAGCCGCTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACACTACCCG-CCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtaagcggggtcttgggaggtggcccatccagagcaccctcactggtgcc Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCG-TGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCC--GTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gtgcaccacactacttaactgctaccatcatgctcttttctccctctcagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCGCCTTAAGCCGCTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACACTACCCGC---CTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtaagcggggtcttgggaggtggcccatccagagcaccctcactggtgcc Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCG-TGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCC--GTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gtgcaccacactacttaactgctaccatcatgctcttttctccctctcagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCGCCTTAAGCCGCTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACACTACCCGC---CTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtaagcggggtcttgggaggtggcccatccagagcaccctcactggtgcc Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gtgcaccacactacttaactgctaccatcatgctcttttctccctctcagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCGCCTTAAGCCGCTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACACTACCCGCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtaagcggggtcttgggaggtggcccatccagagcaccctcactggtgcc #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCC-CAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccgcaccatccccactccaggagcacaggccactcctaaccctacagCCGGCCTCTGCCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCC-GATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtgcgatcactgattccaggaacctcttcctcctcagacccaccttctct Alignment from CESAR CCGGCCTCCGCC-CAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccgcaccatccccactccaggagcacaggccactcctaaccctacagCCGGCCTCTGCCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTC-CGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtgcgatcactgattccaggaacctcttcctcctcagacccaccttctct Alignment from Spaln_aa2Genome C---------GCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAAC catccgcaccatccccactccaggagcacaggccactcctaaccctacagCCGGCCTCTGCCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCG-ATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtgcgatcactgattccaggaacctcttcctcctcagacccaccttctct Alignment from Spaln_nt2Genome CCGGCCTCCGCCC-AGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccgcaccatccccactccaggagcacaggccactcctaaccctacagCCGGCCTCTGCCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCC-GATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtgcgatcactgattccaggaacctcttcctcctcagacccaccttctct Alignment from Pairagon CCGGCCTCCG-CCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccgcaccatccccactccaggagcacaggccactcctaaccctacagCCGGCCTCTGCCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCC-GATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtgcgatcactgattccaggaacctcttcctcctcagacccaccttctct Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccgcaccatccccactccaggagcacaggccactcctaaccctacagCCGGCCTCTGCCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtgcgatcactgattccaggaacctcttcctcctcagacccaccttctct Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccgcaccatccccactccaggagcacaggccactcctaaccctacagCCGGCCTCTGCCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtgcgatcactgattccaggaacctcttcctcctcagacccaccttctct Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccgcaccatccccactccaggagcacaggccactcctaaccctacagCCGGCCTCTGCCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtgcgatcactgattccaggaacctcttcctcctcagacccaccttctct #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctcctgacctgccctgctcgctaaactctagatgttttcctttctcctagcgCTGGCTGAGATCCTACAGTGTGAAGGACATCAGTGGCCGAAAGCTTT-CTATGTCTATTACATTGACtgtgagtcctgagcctggatggaggggggttgctaaataaggttaaggaaa Alignment from CESAR ccCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctcctgacctgccctgctcgctaaactctagatgttttcctttctcctagcgCTGGCTGAGATCCTACAGTGTGAAGGACATCAGTGGCCGAAAGC-TTTCTATGTCTATTACATTGACtgtgagtcctgagcctggatggaggggggttgctaaataaggttaaggaaa Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctcctgacctgccctgctcgctaaactctagatgttttcctttctcctagCGCTGGCTGAGATCCTAcAGTGTGAAGGACATCAGTGGCCGAAAGCT-TTCTATGTCTATTACATTGACTgtgagtcctgagcctggatggaggggggttgctaaataaggttaaggaaa Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctcctgacctgccctgctcgctaaactctagatgttttcctttctcctagCGCTGGCTGAGATCCTACAGTGTGAAGGACATCAGTGGCCGAAAGC-TTTCTATGTCTATTACATTGACTgtgagtcctgagcctggatggaggggggttgctaaataaggttaaggaaa Alignment from Pairagon CCCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctcctgacctgccctgctcgctaaactctagatgttttcctttctcctagCGCTGGCTGAGATCCTACAGTGTGAAGGACATCAGTGGCCGAAAGC-TTTCTATGTCTATTACATTGACTgtgagtcctgagcctggatggaggggggttgctaaataaggttaaggaaa Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctcctgacctgccctgctcgctaaactctagatgttttcctttctcctagCGCTGGCTGAGATCCTACAGTGTGAAGGACATCAGTGGCCGAAAGCTTTCTATGTCTATTACATTGACTgtgagtcctgagcctggatggaggggggttgctaaataaggttaaggaaa Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctcctgacctgccctgctcgctaaactctagatgttttcctttctcctagCGCTGGCTGAGATCCTACAGTGTGAAGGACATCAGTGGCCGAAAGCTTTCTATGTCTATTACATTGACTgtgagtcctgagcctggatggaggggggttgctaaataaggttaaggaaa Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctcctgacctgccctgctcgctaaactctagatgttttcctttctcctagCGCTGGCTGAGATCCTACAGTGTGAAGGACATCAGTGGCCGAAAGCTTTCTATGTCTATTACATTGACTgtgagtcctgagcctggatggaggggggttgctaaataaggttaaggaaa #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATC-AGATAATGAAGATGAGTGGcgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from CESAR GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATC-AGATAATGAAGATGAGTGGcgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Spaln_aa2Genome GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCcGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCA-GATAATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Spaln_nt2Genome GGG-AGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCA-GATAATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Pairagon ----------------------------------------------------GGAGATAAT-CGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC GAGCCGGAGGCCTGCCAGTACCCAGCCCTTGACTATTCTTCTCCTCTTAGGGGGAGATAATCCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAG-ATAATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAAC--CAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttaggGGGAGATAATCCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCA---GATAATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Exonerate_coding2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAAC--CAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttaggGGGAGATAATCCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCA---GATAATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from GeneWise gagccggaggcctgccagtacccagcccttgactattcttctcctcttagggggagataatccgagggatgccgcctgcctgtccttcggcgcaatcagataatgaagatgagtggcgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggaacaggacttctgcaaataaccttccagcatattgttttgttccatagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACTGGCTCGCTACAGATTCAAGCTTTGCGCCATA-TGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTGCTCACACCAggttagtctgagcactgggcgccaggatgggtcatgttagggctcctggat Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggaacaggacttctgcaaataaccttccagcatattgttttgttccatagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACTGGCTCGCTACAGATTCAAGCTTTGC-GCCATATGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTGCTCACACCAggttagtctgagcactgggcgccaggatgggtcatgttagggctcctggat Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggaacaggacttctgcaaataaccttccagcatattgttttgttccatagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACTGGCTCGCTACAGATTCAAGCTTTGCGCCATATGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTGCTCACACCAGgttagtctgagcactgggcgccaggatgggtcatgttagggctcctggat Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggaacaggacttctgcaaataaccttccagcatattgttttgttccatagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACTGGCTCGCTACAGATTCAAGCTTTGCGCCATA-TGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTGCTCACACCAGgttagtctgagcactgggcgccaggatgggtcatgttagggctcctggat Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggaacaggacttctgcaaataaccttccagcatattgttttgttccatagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACTGGCTCGCTACAGATTCAAGCTTTGCGCCATA-TGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTGCTCACACCAGgttagtctgagcactgggcgccaggatgggtcatgttagggctcctggat Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggaacaggacttctgcaaataaccttccagcatattgttttgttccatagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACTGGCTCGCTACAGATTCAAGCTTTGCGCCATATGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTGCTCACACCAGgttagtctgagcactgggcgccaggatgggtcatgttagggctcctggat Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggaacaggacttctgcaaataaccttccagcatattgttttgttccatagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACTGGCTCGCTACAGATTCAAGCTTTGCGCCATATGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTGCTCACACCAGgttagtctgagcactgggcgccaggatgggtcatgttagggctcctggat Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCT---TTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggaacaggacttctgcaaataaccttccagcatattgttttgttccatagTTCAGGGGTGGACCTCAAAAGTTTCGA---AGTGACTGGCTCGCTACAGATTCAAGCTTTGCGCCATATGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTGCTCACACCAGgttagtctgagcactgggcgccaggatgggtcatgttagggctcctggat #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTAC-CCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGG-GAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTAC-CCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTG-GGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCT-GCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCtGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGG-AGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACC-CTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGG-GAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTA-CCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGG-GAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAG-CGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa attcttccatggtttattcttatctttctctttttatttatctacaacagatTTTAATGTCGAATATATCCAGCCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATT-TGATGGACTTGGAATAaggtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from CESAR atTTTAATGTAGAGTATATCCAG-CGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa attcttccatggtttattcttatctttctctttttatttatctacaacagatTTTAATGTCGAATATATCCAGCCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAAT-TTGATGGACTTGGAATAaggtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAG-CGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGcCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTT-GATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAG-CGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATT-TGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Pairagon ATTTTAATGTAGAGTATATCCAG-CGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATT-TGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTG-GATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGCGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTA-CCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from CESAR GGCTGTGTGCAAGTTTTG-GATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGCGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGT-ACCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacaggtgcaagTTTTGC------------GATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTAC-CTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTG-GATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGCGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTA-CCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Pairagon GGCTGTGTGCAAGTTTTG-GATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGCGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTA-CCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatCCACAGGTGCAAGTTTTGCGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTACCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacagGTGCAAGTT-----TTGCGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTAC-CTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from GeneWise GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacaggtgcaagTTTTGC------------GATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTAC-CTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATC-AACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCCAACACGTCCTTATTGACCCTGGGAATGTGTGTCA-TGTTTTGAAGAACAGTGAAAAGTCAaagtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATC-AACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCCAACACGTCCTTATTGACCCTGGGAATGTGTGTC-ATGTTTTGAAGAACAGTGAAAAGTCAaagtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCCAACACGTCCTTATTGACCCTGGGAATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATAT-CAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCCAACACGTCCTTATTGACCCTGGGAATGTGTGTC-ATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATAT-CAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCCAACACGTCCTTATTGACCCTGGGAATGTGTGTC-ATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCCAACACGTCCTTATTGACCCTGGGAATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCCAACACGTCCTTATTGACCCTGGGAATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCCAACACGTCCTTATTGACCCTGGGAATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa #### Kif20b_ID7008_13 --> 0 - 2 Original Alignment GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTT-AAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa taaaaaggatgcaatcatagttgactgggtgacttgtggctatttttcagGAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGATTAATAAATGAAAATCAAGAAAAATTATCATTGGAACTTCAAGATCCGAGAAGACGTTACACAGGAATTCACGCAGT-TTGGAGCCAACGGGAAGCCGATTTTaagtatgctattcctctgtcatatcttggcaagaatttagatttattttttt Alignment from CESAR GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTT-AAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa taaaaaggatgcaatcatagttgactgggtgacttgtggctatttttcagGAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGATTAATAAATGAAAATCAAGAAAAATTATCATTGGAACTTCAAGATCCGAGAAGACGTTACACAGGAATTCACGCAGT-TTGGAGCCAACGGGAAGCCGATTTTaagtatgctattcctctgtcatatcttggcaagaatttagatttattttttt Alignment from Spaln_aa2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA taaaaaggatgcaatcatagttgactgggtgacttgtggctatttttcagGAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGATTAATAAATGAAAATCAAGAAAAATTATCATTGGAACTTCAAGATCCGAGAAGACGTTACACAGGAATTCACGCAGTTTGGAGCCAACGGGAAGCCGATTTTAAgtatgctattcctctgtcatatcttggcaagaatttagatttattttttt Alignment from Spaln_nt2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTT-AAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA taaaaaggatgcaatcatagttgactgggtgacttgtggctatttttcagGAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGATTAATAAATGAAAATCAAGAAAAATTATCATTGGAACTTCAAGATCCGAGAAGACGTTACACAGGAATTCACGCAGT-TTGGAGCCAACGGGAAGCCGATTTTAAgtatgctattcctctgtcatatcttggcaagaatttagatttattttttt Alignment from Pairagon GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTT-AAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA taaaaaggatgcaatcatagttgactgggtgacttgtggctatttttcagGAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGATTAATAAATGAAAATCAAGAAAAATTATCATTGGAACTTCAAGATCCGAGAAGACGTTACACAGGAATTCACGCAGT-TTGGAGCCAACGGGAAGCCGATTTTAAgtatgctattcctctgtcatatcttggcaagaatttagatttattttttt Alignment from Exonerate_protein2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA taaaaaggatgcaatcatagttgactgggtgacttgtggctatttttcagGAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGATTAATAAATGAAAATCAAGAAAAATTATCATTGGAACTTCAAGATCCGAGAAGACGTTACACAGGAATTCACGCAGTTTGGAGCCAACGGGAAGCCGATTTTAAgtatgctattcctctgtcatatcttggcaagaatttagatttattttttt Alignment from Exonerate_coding2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA taaaaaggatgcaatcatagttgactgggtgacttgtggctatttttcagGAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGATTAATAAATGAAAATCAAGAAAAATTATCATTGGAACTTCAAGATCCGAGAAGACGTTACACAGGAATTCACGCAGTTTGGAGCCAACGGGAAGCCGATTTTAAgtatgctattcctctgtcatatcttggcaagaatttagatttattttttt Alignment from GeneWise GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA taaaaaggatgcaatcatagttgactgggtgacttgtggctatttttcagGAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGATTAATAAATGAAAATCAAGAAAAATTATCATTGGAACTTCAAGATCCGAGAAGACGTTACACAGGAATTCACGCAGTTTGGAGCCAACGGGAAGCCGATTTTAAgtatgctattcctctgtcatatcttggcaagaatttagatttattttttt #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGA-CGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACCGAGGACACCGCCGTGGCAGCAGAGATGTGGTTGGGC-TCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattttc Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGA-CGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACCGAGGACACCGCCGTGGCAGCAGAGATGTGGTTG-GGCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattctt Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACCGAGGACACCGCCGTGGCAGCAGAGATGTGGTTGGGCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattttc Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGA-CGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACCGAGGACACCGCCGTGGCAGCAGAGATGTGGTTGGGC-TCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattttc Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGA-CGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACCGAGGACACCGCCGTGGCAGCAGAGATGTGGTTGGG-CTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattttc Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGA-CGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGG--CCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACCGAGGACACCGCCGTGGCAGCAGAGATGTGGTTGGGCT---CAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattttc Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACG---AGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGA--CCGAGGACACCGCCGTGGCAGCAGAGATGTGGTTGGGCT-CAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattttc Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACCGAGGACACCGCCGTGGCAGCAGAGATGTGGTTGGGCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattttc #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCA-GATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCACGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGC-GTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from CESAR GTCCTGGGCAAGTTTCACCCA-GATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCACGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTG-CGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCACGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCA-GATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCACGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGC-GTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Pairagon GTCCTGGGCAAGTTTCACCCA-GATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCACGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGC-GTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCACGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Exonerate_coding2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCACGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCACGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGAT-GTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATCGTCCCCAAAGACTCCCTCGACGACCTGTTTC-CAATGAAGATGAACAGAGGTCAggtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from CESAR GAGGAGAAGGGTGAT-GTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATCGTCCCCAAAGACTCCCTCGACGACCTGTTTC-CAATGAAGATGAACAGAGGTCAggtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Spaln_aa2Genome GAGGAGAAGGGTGAT-GTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATcGTCCCCAAAGACTCCCTCGACGACCTGTTTCCAAT-GAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Spaln_nt2Genome GAGGAGAAGGGTGAT-GTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATCGTCCCCAAAGACTCCCTCGACGACCTGTTT-CCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Pairagon GAGGAGAAGGGTGAT-GTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATCGTCCCCAAAGACTCCCTCGACGACCTGTTTC-CAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATCGTCCCCAAAGACTCCCTCGACGACCTGTTTCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Exonerate_coding2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATCGTCCCCAAAGACTCCCTCGACGACCTGTTTCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from GeneWise ---------------------------------------------------GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAGCC- CCAATACATCTGCTGCTGGGGCCAACAATTGCCACTCTTGGCCATTCCAGGAAGAGAAGGGTGATCGTCCCCAAAGACTCCCTCGACGACCTGTTTCCAATGAAGATGAACAGAGGTCAGGTCAgtaggggcaattagctatgagttcagagaagggttatttttagcac #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCC-CAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGC-CCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGcTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCCAAG-ACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCC-CAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCC-CAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGC--CTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCC---AAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTC---CCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG--CTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCC-AAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCC-AAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATG-CTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGT-AAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from CESAR GCCCAGGACCCCCAGATG-CTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTG-TAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Spaln_aa2Genome GGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCT tgattttttggtcagatgacctgatatcctgttcctctttcaccattcaggctcagGACCCCCAGATGCCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTgtaaattctgctctcaactacttccgagtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGC-TGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGT-AAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Pairagon GCCCAGGACCCCCAGATG-CTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGT-AAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATG-CTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCT tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTgtaaattctgctctcaactacttccgagtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATG-CTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCT tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTgtaaattctgctctcaactacttccgagtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from GeneWise GGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcaggctcagGACCCCCAGATGCCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGTA-AATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta #### Loxl4_ID8569_6 --> 0 - 1 Original Alignment CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGG-AACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg aggcgcccctcactgaggcccatctgtaggacattttgtttttgttttagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGCAACCTCATTTCAGCCAGTGTTGTGTGTCACCAGCTTGGCT-TGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAggtatggaaagaagttcagggtgtttcaaagggcctggaggcaccatgagc Alignment from CESAR CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGG-AACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg aggcgcccctcactgaggcccatctgtaggacattttgtttttgttttagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGCAACCTCATTTCAGCCAGTGTTGTGTGTCACCAGCTTG-GCTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAggtatggaaagaagttcagggtgtttcaaagggcctggaggcaccatgagc Alignment from Spaln_aa2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggcgcccctcactgaggcccatctgtaggacattttgtttttgttttagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGCAACCTCATTTCAGCCAGTGTTGTGTGTCACCAGCTTGGCTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtatggaaagaagttcagggtgtttcaaagggcctggaggcaccatgagc Alignment from Spaln_nt2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGG-AACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggcgcccctcactgaggcccatctgtaggacattttgtttttgttttagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGCAACCTCATTTCAGCCAGTGTTGTGTGTCACCAGCTTGGC-TTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtatggaaagaagttcagggtgtttcaaagggcctggaggcaccatgagc Alignment from Pairagon CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGG-AACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggcgcccctcactgaggcccatctgtaggacattttgtttttgttttagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGCAACCTCATTTCAGCCAGTGTTGTGTGTCACCAGCTTGGC-TTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtatggaaagaagttcagggtgtttcaaagggcctggaggcaccatgagc Alignment from Exonerate_protein2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggcgcccctcactgaggcccatctgtaggacattttgtttttgttttagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGCAACCTCATTTCAGCCAGTGTTGTGTGTCACCAGCTTGGCTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtatggaaagaagttcagggtgtttcaaagggcctggaggcaccatgagc Alignment from Exonerate_coding2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggcgcccctcactgaggcccatctgtaggacattttgtttttgttttagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGCAACCTCATTTCAGCCAGTGTTGTGTGTCACCAGCTTGGCTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtatggaaagaagttcagggtgtttcaaagggcctggaggcaccatgagc Alignment from GeneWise CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggcgcccctcactgaggcccatctgtaggacattttgtttttgttttagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGCAACCTCATTTCAGCCAGTGTTGTGTGTCACCAGCTTGGCTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtatggaaagaagttcagggtgtttcaaagggcctggaggcaccatgagc #### Loxl4_ID8570_5 --> 1 - 0 Original Alignment gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATG-CACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcaggCTCAACAGCCTCACAAAAGAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACT-CCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from CESAR gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATG-CACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcaggCTCAACAGCCTCACAAAAGAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCCACGCTGTGGTCAGCTGTGTGGCAGGTCCCC-ACTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Spaln_aa2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Spaln_nt2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATG-CACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCAC-TCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Pairagon GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATG-CACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCAC-TCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Exonerate_protein2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATG-CACGCTGTGGTCAGCTGTGTGGCAGGGCCCCAC--TTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTC---CGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Exonerate_coding2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATG-CACGCTGTGGTCAGCTGTGTGGCAGGGCCCCAC--TTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTC---CGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from GeneWise GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCA-GAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCACGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGC-CGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatga Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCA-GAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCACGAGCACTTTGTCTGCACTCACTGCAAGGAGGAG-CCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatcc Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCACGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatga Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCA-CCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCACGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGC-CGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatga Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCA-GAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCACGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGC-CGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatga Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCA-GAGCACTTTGTCTGCACTCACTGCAAGGAGGAG--CTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCACGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCC---GGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatga Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCA-GAGCACTTTGTCTGCACTCACTGCAAGGAGGAG--CTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCACGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCC---GGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatga Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAG---CTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCACGA---GCACTTTGTCTGCACTCACTGCAAGGAGGAGCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatga #### Ltbp3_ID1251_3 --> 2 - 0 Original Alignment tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTG-CCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccacaaccctgcaggtagaggctgagtgcctcttcttatgtctttcagtaCAGGCTCCGCCCTCCCTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCTGTTCAGGTGCACCGCATTGAAGGACCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCCACATCCCAAGCCCCAGCACCCAAGGCCCC-CACCCAAAAGCCGCTGGGACGCTGCTTCCAGGACACATTGCCCAAGCAGCCTgtaggggaagccccaattccaagagagtagtcattctattcaagcatcac Alignment from CESAR tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTG-CCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccacaaccctgcaggtagaggctgagtgcctcttcttatgtctttcagtaCAGGCTCCGCCCTCCCTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCTGTTCAGGTGCACCGCATTGAAGGACCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCCACATCCCAAGCCCCAGCACCCAAGGC-CCCCACCCAAAAGCCGCTGGGACGCTGCTTCCAGGACACATTGCCCAAGCAGCCTgtaggggaagccccaattccaagagagtagtcattctattcaagcatcac Alignment from Spaln_aa2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccacaaccctgcaggtagaggctgagtgcctcttcttatgtctttcagTACAGGCTCCGCCCTCCCTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCTGTTCAGGTGCACCGCATTGAAGGACCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCCACATCCCAAGCCCCAGCACCCAAGGCCCCCACCCAAAAGCCGCTGGGACGCTGCTTCCAGGACACATTGCCCAAGCAGCCTgtaggggaagccccaattccaagagagtagtcattctattcaagcatcac Alignment from Spaln_nt2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCG-CATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccacaaccctgcaggtagaggctgagtgcctcttcttatgtctttcagTACAGGCTCCGCCCTCCCTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCTGTTCAGGTGCACCGCATTGAAGGACCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCCACATCCCAAGCCCCAGCACCCAAGGCC-CCCACCCAAAAGCCGCTGGGACGCTGCTTCCAGGACACATTGCCCAAGCAGCCTgtaggggaagccccaattccaagagagtagtcattctattcaagcatcac Alignment from Pairagon TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTG-CCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccacaaccctgcaggtagaggctgagtgcctcttcttatgtctttcagTACAGGCTCCGCCCTCCCTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCTGTTCAGGTGCACCGCATTGAAGGACCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCCACATCCCAAGCCCCAGCACCCAAGGCC-CCCACCCAAAAGCCGCTGGGACGCTGCTTCCAGGACACATTGCCCAAGCAGCCTgtaggggaagccccaattccaagagagtagtcattctattcaagcatcac Alignment from Exonerate_protein2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccacaaccctgcaggtagaggctgagtgcctcttcttatgtctttcagTACAGGCTCCGCCCTCCCTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCTGTTCAGGTGCACCGCATTGAAGGACCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCCACATCCCAAGCCCCAGCACCCAAGGCCCCCACCCAAAAGCCGCTGGGACGCTGCTTCCAGGACACATTGCCCAAGCAGCCTgtaggggaagccccaattccaagagagtagtcattctattcaagcatcac Alignment from Exonerate_coding2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccacaaccctgcaggtagaggctgagtgcctcttcttatgtctttcagTACAGGCTCCGCCCTCCCTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCTGTTCAGGTGCACCGCATTGAAGGACCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCCACATCCCAAGCCCCAGCACCCAAGGCCCCCACCCAAAAGCCGCTGGGACGCTGCTTCCAGGACACATTGCCCAAGCAGCCTgtaggggaagccccaattccaagagagtagtcattctattcaagcatcac Alignment from GeneWise TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccacaaccctgcaggtagaggctgagtgcctcttcttatgtctttcagTACAGGCTCCGCCCTCCCTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCTGTTCAGGTGCACCGCATTGAAGGACCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCCACATCCCAAGCCCCAGCACCCAAGGCCCCCACCCAAAAGCCGCTGGGACGCTGCTTCCAGGACACATTGCCCAAGCAGCCTgtaggggaagccccaattccaagagagtagtcattctattcaagcatcac #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGT-GACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagatATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTCGACTGCCTCAACAACCCTGGCTCTTATCGCT-TGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAggtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGT-GACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagatATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTCGACTGCCTCAACAACCCTGGCTCTTATCGC-TTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAggtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTCGACTGCCTCAACAACCCTGGCTCTTATCGCTTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGT-GACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTCGACTGCCTCAACAACCCTGGCTCTTATCGCT-TGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGT-GACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTCGACTGCCTCAACAACCCTGGCTCTTATCGCT-TGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTCGACTGCCTCAACAACCCTGGCTCTTATCGCTTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTCGACTGCCTCAACAACCCTGGCTCTTATCGCTTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from GeneWise --GATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagCAGATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTCGACTGCCTCAACAACCCTGGCTCTTATCGCTTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACC-GAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gacatagcaactttcaggtcctgccctctaccaatatcttgtcctcctagctGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCCGAACACCAGTGCCAGCACCCTCTGACCACAC-CCTAACCCACCAGCTCTGCTGCTGTAGTGTCGGTAAAGCTTGGGGCGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaagttagaagctccttgtggatgatttaaggatgggacaaagttgtgt Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACC-GAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gacatagcaactttcaggtcctgccctctaccaatatcttgtcctcctagctGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCCGAACACCAGTGCCAGCACCCTCTGACCACA-CCCTAACCCACCAGCTCTGCTGCTGTAGTGTCGGTAAAGCTTGGGGCGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaagttagaagctccttgtggatgatttaaggatgggacaaagttgtgt Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gacatagcaactttcaggtcctgccctctaccaatatcttgtcctcctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCCGAACACCAGTGCCAGCACCCTCTGACCACACCCTAACCCACCAGCTCTGCTGCTGTAGTGTCGGTAAAGCTTGGGGCGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagttagaagctccttgtggatgatttaaggatgggacaaagttgtgt Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCA-CCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gacatagcaactttcaggtcctgccctctaccaatatcttgtcctcctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCCGAACACCAGTGCCAGCACCCTCTGACCACAC-CCTAACCCACCAGCTCTGCTGCTGTAGTGTCGGTAAAGCTTGGGGCGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagttagaagctccttgtggatgatttaaggatgggacaaagttgtgt Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCA-CCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gacatagcaactttcaggtcctgccctctaccaatatcttgtcctcctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCCGAACACCAGTGCCAGCACCCTCTGACCACAC-CCTAACCCACCAGCTCTGCTGCTGTAGTGTCGGTAAAGCTTGGGGCGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagttagaagctccttgtggatgatttaaggatgggacaaagttgtgt Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gacatagcaactttcaggtcctgccctctaccaatatcttgtcctcctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCCGAACACCAGTGCCAGCACCCTCTGACCACACCCTAACCCACCAGCTCTGCTGCTGTAGTGTCGGTAAAGCTTGGGGCGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagttagaagctccttgtggatgatttaaggatgggacaaagttgtgt Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gacatagcaactttcaggtcctgccctctaccaatatcttgtcctcctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCCGAACACCAGTGCCAGCACCCTCTGACCACACCCTAACCCACCAGCTCTGCTGCTGTAGTGTCGGTAAAGCTTGGGGCGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagttagaagctccttgtggatgatttaaggatgggacaaagttgtgt Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gacatagcaactttcaggtcctgccctctaccaatatcttgtcctcctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCCGAACACCAGTGCCAGCACCCTCTGACCACACCCTAACCCACCAGCTCTGCTGCTGTAGTGTCGGTAAAGCTTGGGGCGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagttagaagctccttgtggatgatttaaggatgggacaaagttgtgt #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAAGAGCGCCTCAGTGCAGCAGAGCCACCCCACTACCACCACCTCAC-CCCTCGGCCTTACCTAggtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from CESAR CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAAGAGCGCCTCAGTGCAGCAGAGCCACCCCACTACCACCACCTCAC-CCCTCGGCCTTACCTAggtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAAGAGCGCcTCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACC-CCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAAGAGCGCCTCAGTGCAGCAGAGCCACCCCACTACCACCACCTCA-CCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Pairagon CCAGTGAGTGAGGAGCG-ATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAAGAGCGCCTCAGTGCAGCAGAGCCACCCCACTACCACCACCTCA-CCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAAGAGCGCCTCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Exonerate_coding2genome GAGTGACCATGGATCCA------CCAGTGAGTGAGGAGCGA---TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagagGGGTCACTGCTTTTGCTTTCTAGCCAGTGAGTGAAGAGCGCCTCAGT--GCAGCAGAGCCACCCCACTACCACCACCTCACC-CCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from GeneWise ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagccagtgagtgaagagcgcctcagtgcagcagagccaccccactaccaccacctcacccctcggccttacctaggtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagacCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTCGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCA-GGCCTCCAGACCACCCATCTGGGAAggtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagacCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTCGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCA-GGCCTCCAGACCACCCATCTGGGAAggtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTcGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAG-GCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTT-CCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTCGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTC-AGGCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTCGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTC-AGGCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTC--AAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTCGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAG---GCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Exonerate_coding2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTC--AAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTCGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAG---GCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTCGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAG-GCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGG-AAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagccGAATTTCACAGCCTGTGTCCTGATGGTCAAAGGCTATACTCAGGACAACAACATTGTGAACTATG-CATTCCTGCCCACCGGggtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGG-AAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagccGAATTTCACAGCCTGTGTCCTGATGGTCAAAGGCTATACTCAGGACAACAACATTGTGAACTAT-GCATTCCTGCCCACCGGggtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGG-AAAGGCTACACTCAGGACAACAACATTGTGAACTATGGC---ATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTcAAAGGCTATACTCAGGACAACAACATTGTGAACTATGCATTCCTGCCCACCGGGGTGAgtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGG-AAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTCAAAGGCTATACTCAGGACAACAACATTGTGAACTAT-GCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGG-GAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTCAAAGGCTATACTCAGGACAACAACATTGTGAACTAT-GCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGG-AAAGGCTACACTCAGGACAACAACATTGTGAACTAT--GGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTCAAAGGCTATACTCAGGACAACAACATTGTGAACTATGC---ATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Exonerate_coding2genome CCGAATTTCACAGCCTGTGTCCTGATGGG-AAAGGCTACACTCAGGACAACAACATTGTGAACTAT--GGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTCAAAGGCTATACTCAGGACAACAACATTGTGAACTATGC---ATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTCAAAGGCTATACTCAGGACAACAACATTGTGAACTATGCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg #### Ltbp3_ID1271_23 --> 2 - 1 Original Alignment acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGT-GAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg tctcaggaaagcagctgaattcaggccctctctacaccttgcctatctagatTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTGTCGAGAACACACGTGGTGGCTACCGCTGTGCTTGCA-ACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCGGAGGAGATGggtaagccctggcgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from CESAR acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGT-GAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg tctcaggaaagcagctgaattcaggccctctctacaccttgcctatctagatTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTGTCGAGAACACACGTGGTGGCTACCGCTGTGCTTGC-AACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCGGAGGAGATGggtaagccctggcgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Spaln_aa2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tctcaggaaagcagctgaattcaggccctctctacaccttgcctatctagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTGTCGAGAACACACGTGGTGGCTACCGCTGTGCTTGCAACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCGGAGGAGATGGgtaagccctggcgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Spaln_nt2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGT-GAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tctcaggaaagcagctgaattcaggccctctctacaccttgcctatctagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTGTCGAGAACACACGTGGTGGCTACCGCTGTGCTTGCA-ACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCGGAGGAGATGGgtaagccctggcgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Pairagon ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGT-GAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tctcaggaaagcagctgaattcaggccctctctacaccttgcctatctagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTGTCGAGAACACACGTGGTGGCTACCGCTGTGCTTGCA-ACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCGGAGGAGATGGgtaagccctggcgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Exonerate_protein2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGT-GAGAACACACGTGGCGGCTACCGCTGTGCCTGC--ACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tctcaggaaagcagctgaattcaggccctctctacaccttgcctatctagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTGTCGAGAACACACGTGGTGGCTACCGCTGTGCTTGCAA---CCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCGGAGGAGATGGgtaagccctggcgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Exonerate_coding2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGT-GAGAACACACGTGGCGGCTACCGCTGTGCCTGC--ACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tctcaggaaagcagctgaattcaggccctctctacaccttgcctatctagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTGTCGAGAACACACGTGGTGGCTACCGCTGTGCTTGCAA---CCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCGGAGGAGATGGgtaagccctggcgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from GeneWise ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tctcaggaaagcagctgaattcaggccctctctacaccttgcctatctagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTGTCGAGAACACACGTGGTGGCTACCGCTGTGCTTGCAACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCGGAGGAGATGGgtaagccctggcgaaacagtttgctgaggcaggaactaccaaggggtgga #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAG-CTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGC-GCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgtttgctta Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAG-CTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACCTCCACAGCTGCTACTTGAGCAGCCTGGATCTG-CGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgtcaccttg Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgtttgctta Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGC-TCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGC-GCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgtttgctta Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAG-CTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGC-GCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgtttgctta Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgtttgctta Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCGTGCATCTCCACAGGCGTGTTTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCGCTGGAGCACAGGCTACGTCCAGTGGTATGTGTCAATTGGCAGAAGGGT---CATGgtcagggttatacgtttgc Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTC caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCGCTGGAGCACAGGCTACGTCCAGTGGTATGTgtcaattggcagaagggtcatggtcagggttatacgtttgctta #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttataggcTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGC-GCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from CESAR gcTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttataggcTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAG-CGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCAcGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCG-CACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGC-GCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGC-GCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAA gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Exonerate_coding2genome GCGTGTTTGGCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAA gggtagggtggggtggggccagatatggtatatttttaaatGTTTTATAGGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from GeneWise ---------GCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gtggggccagATATGGTATATTTTTAAATGTTTT------------ATAGGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTT-GCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTCGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTAC-CATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTT-GCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTCGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTAC-CATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTT-GCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTcGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACC-ATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTT-GCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTCGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTA-CCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTT-GCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTCGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTA-CCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTCGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGT---AGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTT--CGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACC-ATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTCGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCG-CACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACCATGTACACCGGCGCCGGGGCACCTTCA-GTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGggtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCG-CACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACCATGTACACCGGCGCCGGGGCACCT-TCAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGggtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACCATGTACACCGGCGCCGGGGCACCTTCAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGC-ACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACCATGTACACCGGCGCCGGGGCACCTTC-AGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCG-CACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACCATGTACACCGGCGCCGGGGCACCTTC-AGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACCATGTACACCGGCGCCGGGGCACCTTCAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACCATGTACACCGGCGCCGGGGCACCTTCAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACCATGTACACCGGCGCCGGGGCACCTTCAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTG-GGAGGCCCAAAATGGGaggtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTG-GGAGGCCCAAAATGGGaggtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAG---AACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTcGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGAGGCCCAAAATGGGAGGTGAgtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCT-GGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCT-GGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGA gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGA gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAGG-- gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGAGGCCCAAAATGGGAGGTGAgtgcttcagcaccctaaagccctggtgttctactttttggggctct #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTAC-GGAGGTTTACCACggtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from CESAR gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTA-CGGAGGTTTACCACggtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Spaln_aa2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGcTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTACG-GAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Spaln_nt2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTAC-GGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Pairagon GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTAC-GGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Exonerate_protein2genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCAC ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTACGGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Exonerate_coding2genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCAC ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTACGGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from GeneWise ----------------------------------------------------------------TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACGCC- CTCTCACCCTCCTGTGTCCATTGTGCCAAATGTTTTGCCCGCCTGTGTAGGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTACGGAGGTTTACCACGGTAAgtaccagactccatggacatggcctttcctgatcccaatatagggg #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagcaGACTTCGGGGTGTCACGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTT-CATTGGCACTCCATACtggtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from CESAR cgGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagcaGACTTCGGGGTGTCACGGCGAGGCGACAGCATCCGTTGCCAAGAGACATT-CTTCATTGGCACTCCATACtggtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCACGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCACGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTC-TTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Pairagon CGGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCACGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTC-TTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCACGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCACGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCACGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctaggACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAAAACCCCA-GAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from CESAR gACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctaggACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAAAACC-CCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCcCTCAAGCTGGCCCTAACCAAAAACCCCAGAAG-AGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAAAACCCCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Pairagon GACCCAGAATTTCCACCACTT-CCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAAAACCCC-AGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAAAACCCCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAAAACCCCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCCTCAAGCTGGCCCTAACCAAAAACCCCAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg #### Map4k2_ID1634_13 --> 0 - 1 Original Alignment ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCACGACACCATTCATTCCCGCAGCCATCATGGTCCTG-TGAAAGGACTCCTTCAGAGATCCAGtgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from CESAR ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCACGACACCATTCATTCCCGCAGCCATCATGGTCCTG-TGAAAGGACTCCTTCAGAGATCCAGtgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Spaln_aa2Genome ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAcGACACCATTCATTCCCGCAGCCATCATGGTCCTGT-GAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Spaln_nt2Genome ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCACGACACCATTCATTCCCGCAGCCATCATGGTCCTG-TGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Pairagon ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCACGACACCATTCATTCCCGCAGCCATCATGGTCCTG-TGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Exonerate_protein2genome ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCT--GCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCACGACACCATTCATTCCCGCAGCCATCATGGTCCTGT---GAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Exonerate_coding2genome ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCT--GCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCACGACACCATTCATTCCCGCAGCCATCATGGTCCTGT---GAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from GeneWise ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCACGACACCATTCATTCCCGCAGCCATCATGGTCCTGTGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGA-ACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGACACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGT-AACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGA-ACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGACACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAG-TAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGA-ACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAcACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTA-ACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGA-ACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGACACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGT-AACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGA-ACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGACACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGT-AACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGA-ACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAG--TCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGACACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTA---ACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGATGCCATCGGA-ACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAG--TCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGACACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTA---ACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from GeneWise GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGACACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTT-GGTTCACCCTGTGACTCGAggtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTT-GGTTCACCCTGTGACTCGAggtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATcGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGTT-CACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGG-TTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTT-GGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGG--GTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGTT---CACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGG---CTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAAT--CGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTG-GTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg #### Map4k2_ID1643_22 --> 2 - 0 Original Alignment acCAGTTCCTGGTGGTAGGGGCTGAGGAG-GGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagacCAGTTCCTGGTGGTAGGGGCTAAGGAGCGGCTTCTATACCCTCAACCTGCACAAACTGC-TGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from CESAR acCAGTTCCTGGTGGTAGGGGCTGAGGAG-GGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagacCAGTTCCTGGTGGTAGGGGCTAAGGAGCGGCTTCTATACCCTCAACCTGCACAAACTG-CTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Spaln_aa2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGCGGCTTCTATACCCTCAACCTGCACAAACTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Spaln_nt2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAG-GGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGCGGCTTCTATACCCTCAACCTGCACAAACTGC-TGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Pairagon ACCAGTTCCTGGTGGTAGGGGCTGAGGAG-GGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGCGGCTTCTATACCCTCAACCTGCACAAACTGC-TGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Exonerate_protein2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGCGGCTTCTATACCCTCAACCTGCACAAACTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Exonerate_coding2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGCGGCTTCTATACCCTCAACCTGCACAAACTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from GeneWise ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGCGGCTTCTATACCCTCAACCTGCACAAACTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACCGGCAGTACGTTCCTG-CTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagttCGAAATCCCTATACCAGCAGTACATTCCTGCCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCAAT-GTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from CESAR ttCGAAACCCCTATACCGGCAGTACGTTCCTG-CTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagttCGAAATCCCTATACCAGCAGTACATTCCTGCCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCAA-TGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTG-CTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCAAT-GTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Pairagon TTCGAAACCCCTATACCGGCAGTACGTTCCTG-CTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCAAT-GTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCC-CCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTC-GAATGGAAAAGACaggtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCA-CTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATT-CGAATGGAAAAGACaggtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCA-CTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCCgCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCG-AATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACT-CCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTC-GAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACT-CCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTC-GAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACT---TTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCC--GCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCAT-TCGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAA-GTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagccGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAACGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGA-GAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAA-GTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagccGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAACGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGA-GAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAACGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAA-GTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAACGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGG-AGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAA-GTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAACGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGG-AGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAACGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAACGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAACGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAG-CTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tgctgagtttccttcccgtctgtaccctactcccttgttcttttccacagCAAATTATGAAAGATCAGTGGATGAATGTGGGGCATGAGGATGATGAACCTAAAGCCTTATGTGGAACCTCTTCCTG-CTACAAGGACCCCCGGCGAACAggtaagtccatgctagctgggagcctgaactgcccccacatgagagctgac Alignment from CESAR CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAG-CTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tgctgagtttccttcccgtctgtaccctactcccttgttcttttccacagCAAATTATGAAAGATCAGTGGATGAATGTGGGGCATGAGGATGATGAACCTAAAGCCTTATGTGGAACCTCTTCCT-GCTACAAGGACCCCCGGCGAACAggtaagtccatgctagctgggagcctgaactgcccccacatgagagctgac Alignment from Spaln_aa2Genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccgtctgtaccctactcccttgttcttttccacagCAAATTATGAAAGATCAGTGGATGAATGTGGGGCATGAGGATGATGAACCTAAAGCCTTATGTGGAACCTCTTCCTGCTACAAGGACCCCCGGCGAACAGgtaagtccatgctagctgggagcctgaactgcccccacatgagagctgac Alignment from Spaln_nt2Genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGC-TAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccgtctgtaccctactcccttgttcttttccacagCAAATTATGAAAGATCAGTGGATGAATGTGGGGCATGAGGATGATGAACCTAAAGCCTTATGTGGAACCTCTTCCTG-CTACAAGGACCCCCGGCGAACAGgtaagtccatgctagctgggagcctgaactgcccccacatgagagctgac Alignment from Pairagon CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAG-CTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccgtctgtaccctactcccttgttcttttccacagCAAATTATGAAAGATCAGTGGATGAATGTGGGGCATGAGGATGATGAACCTAAAGCCTTATGTGGAACCTCTTCCTG-CTACAAGGACCCCCGGCGAACAGgtaagtccatgctagctgggagcctgaactgcccccacatgagagctgac Alignment from Exonerate_protein2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccgtctgtaccctactcccttgttcttttccacagCAAATTATGAAAGATCAGTGGATGAATGTGGGGCATGAGGATGATGAACCTAAAGCCTTATGTGGAACCTCTTCCTGCTACAAGGACCCCCGGCGAACAGgtaagtccatgctagctgggagcctgaactgcccccacatgagagctgac Alignment from Exonerate_coding2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccgtctgtaccctactcccttgttcttttccacagCAAATTATGAAAGATCAGTGGATGAATGTGGGGCATGAGGATGATGAACCTAAAGCCTTATGTGGAACCTCTTCCTGCTACAAGGACCCCCGGCGAACAGgtaagtccatgctagctgggagcctgaactgcccccacatgagagctgac Alignment from GeneWise CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccgtctgtaccctactcccttgttcttttccacagCAAATTATGAAAGATCAGTGGATGAATGTGGGGCATGAGGATGATGAACCTAAAGCCTTATGTGGAACCTCTTCCTGCTACAAGGACCCCCGGCGAACAGgtaagtccatgctagctgggagcctgaactgcccccacatgagagctgac #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcaggaGAGGTGTTTGATTACCTACGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTC-AGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from CESAR gaGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcaggaGAGGTGTTTGATTACCTACGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTC-AGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTAcGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCA-GCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTACGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTC-AGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Pairagon GAGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTACGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTC-AGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTACGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTACGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTACGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAA-GAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAACGAGTTCAACGAGAAGACGAAGGACATCAAAGAAGGCATTCCTC-GGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAA-GAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAACGAGTTCAACGAGAAGACGAAGGACATCAAAGAAGGCATTCCT-CGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAA-GAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAcGAGTTCAACGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCG-GCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGC-AAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAACGAGTTCAACGAGAAGACGAAGGACATCAAAGAAGGCATTCCTC-GGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAA-GAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAACGAGTTCAACGAGAAGACGAAGGACATCAAAGAAGGCATTCCTC-GGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAA-GAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCC--CTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAACGAGTTCAACGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCG---GCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAA-GAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCT-GCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAACGAGTTCAACGAGAAGACGAAGGACATCAAAGAAGGCATT--CCTCGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGC-AAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAACGAGTTCAACGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCG-GCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATT-GGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTCGGGCAGCCCACTGTTTCGTACTTGCTGAAGGCAGCTGCTG-GATTGAGAAGGGAGCTCGGCATACAggtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATT-GGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTCGGGCAGCCCACTGTTTCGTACTTGCTGAAGGCAGCTGCTG-GATTGAGAAGGGAGCTCGGCATACAggtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTCGGGCAGCCCACTGTTTCGTACTTGCTGAAGGCAGCTGCTGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATT-GGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTCGGGCAGCCCACTGTTTCGTACTTGCTGAAGGCAGCTGCT-GGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATT-GGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTCGGGCAGCCCACTGTTTCGTACTTGCTGAAGGCAGCTGCT-GGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTCGGGCAGCCCACTGTTTCGTACTTGCTGAAGGCAGCTGCTGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATT-GGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTCGGGCAGCCCACTGTTTCGTACTTGCTGAAGGCAGCTGCTGGATTG-AGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTCGGGCAGCCCACTGTTTCGTACTTGCTGAAGGCAGCTGCTGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccaggGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGCAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCA-GCCGCGAATAGTGGCAGAATACcgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccaggGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGCAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCC-AGCCGCGAATAGTGGCAGAATACcgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGcAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCAG-CCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGCAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCA-GCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGCAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCA-GCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCC--ATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGCAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCAG---CCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCC--ATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGCAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCAG---CCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGCAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCAGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg #### Ms4a2_ID3240_5 --> 0 - 0 Original Alignment GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGG-ACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA ccagggtttggacacacttaaactgacgataatttctggttccatttcagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGCACGGGGATTGCCATGCTGATCCTCAATCTGACCA-TAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACCACAgtaggtatttctcatgaaaaccctaactctctgtgacctgtggtacccta Alignment from CESAR GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGG-ACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA ccagggtttggacacacttaaactgacgataatttctggttccatttcagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGCACGGGGATTGCCATGCTGATCCTCAATCTGACC-ATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACCACAgtaggtatttctcatgaaaaccctaactctctgtgacctgtggtacccta Alignment from Spaln_aa2Genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA ccagggtttggacacacttaaactgacgataatttctggttccatttcagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGCACGGGGATTGCCATGCTGATCCTCAATCTGACCATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACCACAgtaggtatttctcatgaaaaccctaactctctgtgacctgtggtacccta Alignment from Spaln_nt2Genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGG-ACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA ccagggtttggacacacttaaactgacgataatttctggttccatttcagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGCACGGGGATTGCCATGCTGATCCTCAATCTGACC-ATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACCACAgtaggtatttctcatgaaaaccctaactctctgtgacctgtggtacccta Alignment from Pairagon GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGG-ACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA ccagggtttggacacacttaaactgacgataatttctggttccatttcagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGCACGGGGATTGCCATGCTGATCCTCAATCTGACC-ATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACCACAgtaggtatttctcatgaaaaccctaactctctgtgacctgtggtacccta Alignment from Exonerate_protein2genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA ccagggtttggacacacttaaactgacgataatttctggttccatttcagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGCACGGGGATTGCCATGCTGATCCTCAATCTGACCATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACCACAgtaggtatttctcatgaaaaccctaactctctgtgacctgtggtacccta Alignment from Exonerate_coding2genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA ccagggtttggacacacttaaactgacgataatttctggttccatttcagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGCACGGGGATTGCCATGCTGATCCTCAATCTGACCATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACCACAgtaggtatttctcatgaaaaccctaactctctgtgacctgtggtacccta Alignment from GeneWise GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA ccagggtttggacacacttaaactgacgataatttctggttccatttcagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGCACGGGGATTGCCATGCTGATCCTCAATCTGACCATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACCACAgtaggtatttctcatgaaaaccctaactctctgtgacctgtggtacccta #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgacttatttccctttctccctccagttctctgtttttcctattttaggaGAATCAGATAATCGAAACCAACAGCAAGATGGAGATGAAAGTCTGGGACCCAGACAACC-CCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCcggtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from CESAR gaGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgacttatttccctttctccctccagttctctgtttttcctattttaggaGAATCAGATAATCGAAACCAACAGCAAGATGGAGATGAAAGTCTGGGACCCAGACA-ACCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCcggtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGCAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGCAAGATGGAGATGAAAGTCTGGGACCCAGACAACCC-CTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGCAAGATGGAGATGAAAGTCTGGGACCCAGACAACCC-CTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGCAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGCAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCGA-- tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGCAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGGTAgttgggatgatcagggaggtggcctagggcgcaatggactgaaatct #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTC-GCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagcGCTGTGGGAACTTTTCGTGAGAGCCCTAGACTGCACCAGCTCAATTCGGCAGTCAAGCT-GCACATGAGTGCA------GCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from CESAR aGCTGTGGGAACC-TTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagcGCTGTGGGAACTTTTCGTGAGAGCCCTAGACTGCACCAGCTCAATTCGGCAGTCAA-GCTGCACATGAGTGCA------GCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTC-GCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTcGTGAGAGCCCTAGACTGCACCAGCTCAATTCGGCAGTCAAG-CTGCACATGAGT------GCAGCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTT-CGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTCGTGAGAGCCCTAGACTGCACCAGCTCAATTCGGCAGTCAAGC-TGCACATGAGTGCA------GCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Pairagon AGCTGTGGGAAC-CTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTCGTGAGAGCCCTAGACTGCACCAGCTCAATTCGGCAGTCAAGC-TGCACATGAGTGCA------GCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTCGTGAGAGCCCTAGACTGCACCAGCTCAATTCGGCAGTCAAGCTGCACATGAGT------GCAGCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTCGTGAGAGCCCTAGACTGCACCAGCTCAATTCGGCAGTCAAGCTGCACATGAGT------GCAGCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTCGTGAGAGCCCTAGACTGCACCAGCTCAATTCGGCAGTCAAGCTGCACATGAGTGCA------GCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cactgggaacacataccaatctcacccttatttacctctgcattctttagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAG-CCGGTATATTCAGCAGgtaagtgtcaggctagctgaaaagctggaccagaggctatctgattacct Alignment from CESAR CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cactgggaacacataccaatctcacccttatttacctctgcattctttagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACA-GCCGGTATATTCAGCAGgtaagtgtcaggctagctgaaaagctggaccagaggctatctgattacct Alignment from Spaln_aa2Genome CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cactgggaacacataccaatctcacccttatttacctctgcattctttagCTACCCTGGAAGTCAcCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGC-CGGTATATTCAGCAGgtaagtgtcaggctagctgaaaagctggaccagaggctatctgattacct Alignment from Spaln_nt2Genome CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cactgggaacacataccaatctcacccttatttacctctgcattctttagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAG-CCGGTATATTCAGCAGgtaagtgtcaggctagctgaaaagctggaccagaggctatctgattacct Alignment from Pairagon CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cactgggaacacataccaatctcacccttatttacctctgcattctttagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAG-CCGGTATATTCAGCAGgtaagtgtcaggctagctgaaaagctggaccagaggctatctgattacct Alignment from Exonerate_protein2genome CTACCCTGGAAGTCA-CTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACA--GACCGGTATATTCAGCAG cactgggaacacataccaatctcacccttatttacctctgcattctttagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGC---CGGTATATTCAGCAGgtaagtgtcaggctagctgaaaagctggaccagaggctatctgattacct Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACT---TGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cactgggaacacataccaatctcacccttatttacctctgcattctttagCTACCCTGGAAGTCA--CCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCAC-AGCCGGTATATTCAGCAGgtaagtgtcaggctagctgaaaagctggaccagaggctatctgattacct Alignment from GeneWise CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cactgggaacacataccaatctcacccttatttacctctgcattctttagCTACCCTGGAAGTCACCTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGC-CGGTATATTCAGCAGgtaagtgtcaggctagctgaaaagctggaccagaggctatctgattacct #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagtACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGCC-GACTTGTGAGAGCTGTCACagtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagtACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGC-CGACTTGTGAGAGCTGTCACagtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGCCGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGCC-GACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGCC-GACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGCCGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGG---CATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCT--CGGCATGAATGGGGCTGGATTCCAGAAGGGCCG-ACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGCCGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGATTTATTGGA-AAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGATTTATTGGA-AAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAA-AAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAA-AAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGC-CGACTTTGTGCTTCCTGTTGGATTTATTGG--AAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAA---AAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGC-CGACTTTGTGCTTCCTGTTGGATTTATTGG--AAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAA---AAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAA-TATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAG-CTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gggaagattgggcaagatcttctatctctttctattccttttctctgcagtgGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAAC-TTCCTATGAGACCgtgagttggcagagtagattaaaagctgagcagggcaggcggttgttttt Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAG-CTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gggaagattgggcaagatcttctatctctttctattccttttctctgcagtgGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAA-CTTCCTATGAGACCgtgagttggcagagtagattaaaagctgagcagggcaggcggttgttttt Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAG-CTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gggaagattgggcaagatcttctatctctttctattccttttctctgcagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGcCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACT-TCCTATGAGACCgtgagttggcagagtagattaaaagctgagcagggcaggcggttgttttt Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAG-CTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gggaagattgggcaagatcttctatctctttctattccttttctctgcagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAAC-TTCCTATGAGACCgtgagttggcagagtagattaaaagctgagcagggcaggcggttgttttt Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAG-CTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gggaagattgggcaagatcttctatctctttctattccttttctctgcagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAAC-TTCCTATGAGACCgtgagttggcagagtagattaaaagctgagcagggcaggcggttgttttt Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAG-CTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGAC gggaagattgggcaagatcttctatctctttctattccttttctctgcagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACTTCCTATGAGACCgtgagttggcagagtagattaaaagctgagcagggcaggcggttgttttt Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAG-CTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGAC gggaagattgggcaagatcttctatctctttctattccttttctctgcagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACTTCCTATGAGACCgtgagttggcagagtagattaaaagctgagcagggcaggcggttgttttt Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gggaagattgggcaagatcttctatctctttctattccttttctctgcagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACTTCCTATGAGACCgtgagttggcagagtagattaaaagctgagcagggcaggcggttgttttt #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCACGGGGTCCCCTTCTCTGCCAATGGGAGGCCTCTGGCTTCAG-GATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCaggtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from CESAR ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCACGGGGTCCCCTTCTCTGCCAATGGGAGGCCTCTGGCTTCAG-GATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCaggtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Spaln_aa2Genome GCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagatggcaggagCACGGGGTCCCCTTCTCTGCCAATGGGAGGCCTCTGGCTTCAGG-ATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Spaln_nt2Genome ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCACGGGGTCCCCTTCTCTGCCAATGGGAGGCCTCTGGCTTCA-GGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Pairagon ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCACGGGGTCCCCTTCTCTGCCAATGGGAGGCCTCTGGCTTCA-GGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Exonerate_protein2genome ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGG--ATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCACGGGGTCCCCTTCTCTGCCAATGGGAGGCCTCTGGCTTCAGGATT---CGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Exonerate_coding2genome ATGGCAGGGGC---AGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCA--GGAGCACGGGGTCCCCTTCTCTGCCAATGGGAGGCCTCTGGCTTCAGG-ATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagatggcaggagCAC---------GGGGTCCCCTTCTCTGCCAATGGGAGGCCTCTGGCTTCAGGATT-CGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAA-CTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACCTGAACTCACAAACGGACATCACACCCAAGCTTCTCT-GCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAA-CTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACCTGAACTCACAAACGGACATCACACCCAAGCTTCTC-TGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACCTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAA-CTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACCTGAACTCACAAACGGACATCACACCCAAGCTTCTCT-GCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAA-CTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACCTGAACTCACAAACGGACATCACACCCAAGCTTCTCT-GCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACCTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACCTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACCTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTCACC-TACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagaCTTGGCAACTTCACACTACCACATCCCAGTCAGCAGCAGCACACCACTGC-CCTCAGCCTGACCCTGCAGATGaagtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from CESAR gCTTGGCAACTTCACC-TACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagaCTTGGCAACTTCACACTACCACATCCCAGTCAGCAGCAGCACACCACTG-CCCTCAGCCTGACCCTGCAGATGaagtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Spaln_aa2Genome GCTTGGCAACTTCACC-TACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACAcTACCACATCCCAGTCAGCAGCAGCACACCACTGCC-CTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Spaln_nt2Genome GCTTGGCAACTTCAC-CTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACACTACCACATCCCAGTCAGCAGCAGCACACCACTGCC-CTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Pairagon GCTTGGCAACTTCAC-CTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACACTACCACATCCCAGTCAGCAGCAGCACACCACTGC-CCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Exonerate_protein2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACACTACCACATCCCAGTCAGCAGCAGCACACCACTGCCCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Exonerate_coding2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACACTACCACATCCCAGTCAGCAGCAGCACACCACTGCCCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from GeneWise ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagacttggcaacttcacactaccacatcccagtcagcagcagcacaccactgccctcagcctgaccctgcagatgaagtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg #### Myrf_ID2718_19 --> 1 - 1 Original Alignment cAGGTCCAGCCAGAGC-TTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagtAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCT-CATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGggtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from CESAR cAGGTCCAGCCAGAGC-TTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagtAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCT-CATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGggtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Spaln_aa2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Spaln_nt2Genome CAGGTCCAGCCAGAGC-TTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCT-CATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Pairagon CAGGTCCAGCCAGAG-CTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCT-CATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Exonerate_protein2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Exonerate_coding2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from GeneWise CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCA-GACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCACGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGG-AACTATCATTGCTCTAGTGGTGGTCATGGCCTTCaggtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from CESAR TCATCGCCAGCGGTCCCA-GACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCACGACCAAGCCTGCATCAGTCAGCGTTTTCTGC-AGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCaggtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCA-GACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAcGACCAAGCCTGCATCAGTCAGCGTTTTCTGCA-GGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCA-GACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCACGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGG-AACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Pairagon TCATCGCCAGCGGTCCCA-GACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCACGACCAAGCCTGCATCAGTCAGCGTTTTCTGCA-GGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCACGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCACGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCACGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCG-CAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACCAACTGCCAGATACAGTCTTTCATCCTGGCC-TGTGGGCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCG-CAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACCAACTGCCAGATACAGTCTTTCATCCTGGC-CTGTGGGCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACCAACTGCCAGATACAGTCTTTCATCCTGGCCTGTGGGCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGC-AGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACCAACTGCCAGATACAGTCTTTCATCCTGGCC-TGTGGGCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCG-CAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACCAACTGCCAGATACAGTCTTTCATCCTGGCC-TGTGGGCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACCAACTGCCAGATACAGTCTTTCATCCTGGCCTGTGGGCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACCAACTGCCAGATACAGTCTTTCATCCTGGCCTGTGGGCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACCAACTGCCAGATACAGTCTTTCATCCTGGCCTGTGGGCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAAAGC-AAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctttattgggtctaagcactcgatcccggccctgctctcccagcTATGAAGTACAGCTGGAAAGCCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTC-GATCCTCCAGCTCATGGCCAACaggtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from CESAR cTATGAAGTGCAGCTGGAAAGC-AAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctttattgggtctaagcactcgatcccggccctgctctcccagcTATGAAGTACAGCTGGAAAGCCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATT-CGATCCTCCAGCTCATGGCCAACaggtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGC-AAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCcAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCG-ATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGG-AAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTC-GATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Pairagon CTATGAAGTGCAGCTGGAAAG-CAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTC-GATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAG-TGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccaggTATGAGCAAAGTGAGCTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTG-TGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACtggtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from CESAR gTATGAGCAAAGTGAG-TGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccaggTATGAGCAAAGTGAGCTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACT-GTGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACtggtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGCTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGTGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAG-TGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGCTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTG-TGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Pairagon GTATGAGCAAAGTGAG-TGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGCTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTG-TGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAG-TGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACC--GATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGCTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGT---GATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAG-TGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACC--GATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGCTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGT---GATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccaggtatgagC------AAAGTGAGCTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGT-GATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAG-CTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactaatagattttataccagactcctccctcctcagaGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACT-AGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTggtgagctcaagtccaggaatgtcagggggggaaggatgacactgtcctgt Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAG-CTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactaatagattttataccagactcctccctcctcagaGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGAC-TAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTggtgagctcaagtccaggaatgtcagggggggaaggttttctctttcatgt Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggatgacactgtcctgt Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAG-CTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACT-AGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggatgacactgtcctgt Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAG-CTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACT-AGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggatgacactgtcctgt Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggatgacactgtcctgt Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggatgacactgtcctgt Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGGTGAGCTCAAGTCCAGGAATGTCAGGGGGGGAAGGATGACACTGTCCTGT #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTGAGT-GTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagtGAGGTAAAAGTGAGTCGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATG-CCTGGGCATCATCCAGGGGGCTGTGGAGCCTggtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from CESAR tGAGGTGAAAGTGAGT-GTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagtGAGGTAAAAGTGAGTCGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATG-CCTGGGCATCATCCAGGGGGCTGTGGAGCCTggtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGT-GTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTcGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGC-CTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Spaln_nt2Genome TGAGGTGAAAGTGAGT-GTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTCGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATG-CCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Pairagon TGAGGTGAAAGTGAGT-GTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTCGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATG-CCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTCGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Exonerate_coding2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTCGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from GeneWise TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTCGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagccAATGCTACTCTCCAGCGCCCAGGGAACACCACCTGTACAAAGTGTACTAT-CTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from CESAR ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagccAATGCTACTCTCCAGCGCCCAGGGAACACCACCTGTACAAAGTGTA-CTATCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Spaln_aa2Genome GGAACACCTCCTGTACAAA gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagccaatgctactctccagcgcccagGGAACACCACCTGTACAAAgtgtactatctcttcaaccaaagatgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGCGCCCAGGGAACACCACCTGTACAAAGTGT-ACTATCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Pairagon CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGCGCCCAGGGAACACCACCTGTACAAAGTGT-ACTATCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGCGCCCAGGGAACACCACCTGTACAAAGTGTACTATCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGCGCCCAGGGAACACCACCTGTACAAAGTGTACTATCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from GeneWise ACACCTCCTGTAC GGGAAGGGGACGGgttagctgtcagcagagctgtttttctccaatgccagccaatgctactctccagcgcccagggaacaccacctgtacaaagtgtactatctcttcaaccaaagatgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagtCCTCTGCAGGTTCAAATGGTCAATGACCCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACC-AAGGGCTTTCCCAGAGGAGAGGCACTACaggtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagtCCTCTGCAGGTTCAAATGGTCAATGACCCAGTTGATGCTCTTAGAGCGTGCATTCTTGA-ACCAAGGGCTTTCCCAGAGGAGAGGCACTACaggtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCCAGTTGATGCTCTTAGAGCGTGCATTCTTGAA-CCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGA-CCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCCAGTTGATGCTCTTAGAGCGTGCATTCTTGAA-CCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAG-GTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcaggtGTTGACTGGATGAACAAGCGTGATAGCCCGATTTGTGAAGGGAGATG-CTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from CESAR gcGTTGACTGGATGAACAAG-GTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcaggtGTTGACTGGATGAACAAGCGTGATAGCCCGATTTGTGAAGGGAGATGCT-GTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGCGTGATAGCCCGATTTGTGAAGGGAGATGCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAG-GTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGCGTGATAGCCCGATTTGTGAAGGGAGATG-CTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Pairagon GCGTTGACTGGATGAACAAG-GTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGCGTGATAGCCCGATTTGTGAAGGGAGATG-CTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGCGTGATAGCCCGATTTGTGAAGGGAGATGCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGCGTGATAGCCCGATTTGTGAAGGGAGATGCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGCGTGATAGCCCGATTTGTGAAGGGAGATGCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCT-GTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTCGTGTCCCCCACCATTTGCCGTCGTGGGGGCA-CTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTggtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCT-GTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTCGTGTCCCCCACCATTTGCCGTCGTGGGGGCA-CTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTggtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTCGTGTCCCCCACCATTTGCCGTCGTGGGGGCACTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCT-GTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTCGTGTCCCCCACCATTTGCCGTCGTGGGGGCA-CTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCT-GTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTCGTGTCCCCCACCATTTGCCGTCGTGGGGGCA-CTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTCGTGTCCCCCACCATTTGCCGTCGTGGGGGCACTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTCGTGTCCCCCACCATTTGCCGTCGTGGGGGCACTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTGGT------------------------------------------------ ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTCGTGTCCCCCACCATTTGCCGTCGTGGGGGCACTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGGTAAGTCTGGAACCAACTCTAGAGTAGTGCTTCAGAGAGGGCTCTGTAGG #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGAC-CCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCA-GCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCA-CCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCCGCCTCGTGCGCATGCCCACAGTCTGGTGG-GCAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGA-CCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCCGCCTCGTGCGCATGCCCACAGTCTGGT-GGGCAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGA-CCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGC-AGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATG-ATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGCATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAAC-TCAGGGCCTTACAggtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATG-ATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGCATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAA-CTCAGGGCCTTACAggtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATG-ATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAGAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGcATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACTCAGGGCCTTA---CAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATG-ATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGCATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAA-ACTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATG-ATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGCATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAA-CTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATG-ATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAGAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGCATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACTCAGGGCCTTA---CAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATG-ATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAGAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGCATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACTCAGGGCCTTA---CAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGCATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTA-GAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagagGCTGAGCGGCGGGAGCTTCGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCA-TGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTA-GAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagagGCTGAGCGGCGGGAGCTTCGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCA-TGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTA-GAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTcGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCAT-GTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTA-GAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTCGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCA-TGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGC-TAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTCGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCA-TGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTA-GAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGC--ATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTCGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCAT---GTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCT---AGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAG--CTTCGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCAT-GTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTCGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCG-AACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cccacctgcaagccaatcaatgtgtccctccatgtgtgtttcctttgcagaaTCTCCAGGGGCCTTGCAACCTGAAGATCTCCCGAATGGACAAAACAG-AGGTTCTGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAAAggtgagactgaagctccctggggcgggctgtagaggtaatctggaaatccc Alignment from CESAR agTCTCCAGGGGCCTCG-AACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cccacctgcaagccaatcaatgtgtccctccatgtgtgtttcctttgcagaaTCTCCAGGGGCCTTGCAACCTGAAGATCTCCCGAATGGACAAAACAG-AGGTTCTGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAAAggtgagactgaagctccctggggcgggctgtagaggtaatctggaaatccc Alignment from Spaln_aa2Genome GGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cccacctgcaagccaatcaatgtgtccctccatgtgtgtttcctttgcagaatctccagGGGCCTTGCAACCTGAAGATCTCCCGAATGGACAAAACAGA-GGTTCTGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAAAGgtgagactgaagctccctggggcgggctgtagaggtaatctggaaatccc Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCG-AACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cccacctgcaagccaatcaatgtgtccctccatgtgtgtttcctttgcagAATCTCCAGGGGCCTTGCAACCTGAAGATCTCCCGAATGGACAAAACAG-AGGTTCTGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAAAGgtgagactgaagctccctggggcgggctgtagaggtaatctggaaatccc Alignment from Pairagon AGTCTCCAGGGGCCTCG-AACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cccacctgcaagccaatcaatgtgtccctccatgtgtgtttcctttgcagAATCTCCAGGGGCCTTGCAACCTGAAGATCTCCCGAATGGACAAAACAG-AGGTTCTGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAAAGgtgagactgaagctccctggggcgggctgtagaggtaatctggaaatccc Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cccacctgcaagccaatcaatgtgtccctccatgtgtgtttcctttgcagAATCTCCAGGGGCCTTGCAACCTGAAGATCTCCCGAATGGACAAAACAGAGGTTCTGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAAAGgtgagactgaagctccctggggcgggctgtagaggtaatctggaaatccc Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cccacctgcaagccaatcaatgtgtccctccatgtgtgtttcctttgcagAATCTCCAGGGGCCTTGCAACCTGAAGATCTCCCGAATGGACAAAACAGAGGTTCTGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAAAGgtgagactgaagctccctggggcgggctgtagaggtaatctggaaatccc Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cccacctgcaagccaatcaatgtgtccctccatgtgtgtttcctttgcagAATCTCCAGGGGCCTTGCAACCTGAAGATCTCCCGAATGGACAAAACAGAGGTTCTGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAAAGgtgagactgaagctccctggggcgggctgtagaggtaatctggaaatccc #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAG-ATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAg tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGCATCGAGAGGCCTGTAACAGTGTTCCTGCAGC-GAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAggtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAG-ATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAg tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGCATCGAGAGGCCTGTAACAGTGTTCCTGCAG-CGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAggtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGCATCGAGAGGCCTGTAACAGTGTTCCTGCAGCGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAG-ATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGCATCGAGAGGCCTGTAACAGTGTTCCTGCAGC-GAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAG-ATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGCATCGAGAGGCCTGTAACAGTGTTCCTGCAGC-GAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGCATCGAGAGGCCTGTAACAGTGTTCCTGCAGCGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGCATCGAGAGGCCTGTAACAGTGTTCCTGCAGCGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGCATCGAGAGGCCTGTAACAGTGTTCCTGCAGCGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGG-GGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg agggtctgatctgtattaggttctgacacccccacctcccccaaccacagacAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGCGGTGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTGCTG-GGGTTATGGAGGTGCTGGAGGAggtaggagggtacaaatgacaggggaaaggatggaggatggaggtgatacg Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGG-GGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg agggtctgatctgtattaggttctgacacccccacctcccccaaccacagacAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGCGGTGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTGCTG-GGGTTATGGAGGTGCTGGAGGAggtaggagggtacaaatgacaggggaaaggatggaggatggaggtgatacg Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTC-GGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatctgtattaggttctgacacccccacctcccccaaccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTgGGCGGTGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTGCTGG-GGTTATGGAGGTGCTGGAGGAGgtaggagggtacaaatgacaggggaaaggatggaggatggaggtgatacg Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCC-TTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatctgtattaggttctgacacccccacctcccccaaccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGCGGTGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTGCTGGGG-TTATGGAGGTGCTGGAGGAGgtaggagggtacaaatgacaggggaaaggatggaggatggaggtgatacg Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGG-GGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatctgtattaggttctgacacccccacctcccccaaccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGCGGTGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTGCT-GGGGTTATGGAGGTGCTGGAGGAGgtaggagggtacaaatgacaggggaaaggatggaggatggaggtgatacg Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTC-GGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCT--GGGGGTTATGGAGGCGCTGGAGGAG agggtctgatctgtattaggttctgacacccccacctcccccaaccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGCGGTGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTGCTGG---GGTTATGGAGGTGCTGGAGGAGgtaggagggtacaaatgacaggggaaaggatggaggatggaggtgatacg Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGG---ATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatctgtattaggttctgacacccccacctcccccaaccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTT--GGGCGGTGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTGCTGG-GGTTATGGAGGTGCTGGAGGAGgtaggagggtacaaatgacaggggaaaggatggaggatggaggtgatacg Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG agggtctgatctgtattaggttctgacacccccacctcccccaaccacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGCGGTGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGTTATGGAGGTGCTGGAGGAGgtaggagggtacaaatgacaggggaaaggatggaggatggaggtgatacg #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTG-GACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac caggaatgcttgagggttagcatgcaccactgtgtgtttctggttgccagctCGTGAGTACAATGCGCGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGCGTTGCTGCGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGAC-GCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaaaacacagagtatgggctaccatgagatctccagggcgtggggtttt Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTG-GACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac caggaatgcttgagggttagcatgcaccactgtgtgtttctggttgccagctCGTGAGTACAATGCGCGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGCGTTGCTGCGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGA-CGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaaaacacagagtatgggctaccatgagatctccagggcgtggggtttt Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTG-GACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC caggaatgcttgagggttagcatgcaccactgtgtgtttctggttgccagCTCGTGAGTACAATGCGCGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGCGTTGCTGcGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACG-CGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaaacacagagtatgggctaccatgagatctccagggcgtggggtttt Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTG-GACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC caggaatgcttgagggttagcatgcaccactgtgtgtttctggttgccagCTCGTGAGTACAATGCGCGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGCGTTGCTGCGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGAC-GCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaaacacagagtatgggctaccatgagatctccagggcgtggggtttt Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTG-GACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC caggaatgcttgagggttagcatgcaccactgtgtgtttctggttgccagCTCGTGAGTACAATGCGCGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGCGTTGCTGCGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGAC-GCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaaacacagagtatgggctaccatgagatctccagggcgtggggtttt Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTG-GACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGA--CAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC caggaatgcttgagggttagcatgcaccactgtgtgtttctggttgccagCTCGTGAGTACAATGCGCGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGCGTTGCTGCGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACG---CGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaaacacagagtatgggctaccatgagatctccagggcgtggggtttt Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTG-GACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGA--CAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC caggaatgcttgagggttagcatgcaccactgtgtgtttctggttgccagCTCGTGAGTACAATGCGCGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGCGTTGCTGCGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACG---CGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaaacacagagtatgggctaccatgagatctccagggcgtggggtttt Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC caggaatgcttgagggttagcatgcaccactgtgtgtttctggttgccagCTCGTGAGTACAATGCGCGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGCGTTGCTGCGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaaacacagagtatgggctaccatgagatctccagggcgtggggtttt #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATT-TATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagcCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTCTATCATGCTCAGTACCTTGGCGTAATAAACCTCACCA-CCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATT-TATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagcCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTCTATCATGCTCAGTACCTTGGCGTAATAAACCTCA-CCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATT-TATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTcTATCATGCTCAGTACCTTGGCGTAATAAACCTCACCAC-CACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATT-TATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTCTATCATGCTCAGTACCTTGGCGTAATAAACCTCACC-ACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATT-TATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTCTATCATGCTCAGTACCTTGGCGTAATAAACCTCACC-ACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATT-TATCACGCTCAGTACCTCGGCGTCATCAACCTCACC--AACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTCTATCATGCTCAGTACCTTGGCGTAATAAACCTCACCAC---CACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATT-TATCACGCTCAGTACCTCGGCGTCATCAACCTCACC--AACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTCTATCATGCTCAGTACCTTGGCGTAATAAACCTCACCAC---CACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTCTATCATGCTCAGTACCTTGGCGTAATAAACCTCACCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCA-GAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG gaaggccatttcgaggatcaatgctgcatctctatcccttcttcttgcaggaTTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCACGGGAGGCAAGGGGGCCGAACTGCCCTACATC-AGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgcaagtatgaggactatggacgggatgagacagactgtgggttgtcccca Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCA-GAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG gaaggccatttcgaggatcaatgctgcatctctatcccttcttcttgcaggaTTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCACGGGAGGCAAGGGGGCCGAACTGCCCTACAT-CAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgcaagtatgaggactatggacgggatgagacagactgtgggttgtcccca Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG gaaggccatttcgaggatcaatgctgcatctctatcccttcttcttgcagGATTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCACGGGAGGCAAGGGGGCCGAACTGCCCTACATCAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgcaagtatgaggactatggacgggatgagacagactgtgggttgtcccca Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCA-GAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG gaaggccatttcgaggatcaatgctgcatctctatcccttcttcttgcagGATTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCACGGGAGGCAAGGGGGCCGAACTGCCCTACATC-AGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgcaagtatgaggactatggacgggatgagacagactgtgggttgtcccca Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCA-GAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG gaaggccatttcgaggatcaatgctgcatctctatcccttcttcttgcagGATTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCACGGGAGGCAAGGGGGCCGAACTGCCCTACATC-AGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgcaagtatgaggactatggacgggatgagacagactgtgggttgtcccca Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG gaaggccatttcgaggatcaatgctgcatctctatcccttcttcttgcagGATTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCACGGGAGGCAAGGGGGCCGAACTGCCCTACATCAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgcaagtatgaggactatggacgggatgagacagactgtgggttgtcccca Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG gaaggccatttcgaggatcaatgctgcatctctatcccttcttcttgcagGATTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCACGGGAGGCAAGGGGGCCGAACTGCCCTACATCAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgcaagtatgaggactatggacgggatgagacagactgtgggttgtcccca Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTA gaaggccatttcgaggatcaatgctgcatctctatcccttcttcttgcagGATTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCACGGGAGGCAAGGGGGCCGAACTGCCCTACATCAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAgtcaccaaggcaagtatgaggactatggacgggatgagacagactgtgggttgtcccca #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCT-GGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTCGGAAACACACCACTCCACCTGGCAGCTGGACTCG-ATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTggtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCT-GGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTCGGAAACACACCACTCCACCTGGCAGCTGGACTC-GATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTggtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTCGGAAACACACCACTCCACCTGGCAGCTGGACTCGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCT-GGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTCGGAAACACACCACTCCACCTGGCAGCTGGACTC-GATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCT-GGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTCGGAAACACACCACTCCACCTGGCAGCTGGACTC-GATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTCGGAAACACACCACTCCACCTGGCAGCTGGACTCGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGG---AAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCT--CGGAAACACACCACTCCACCTGGCAGCTGGACTCGA-TCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTCGGAAACACACCACTCCACCTGGCAGCTGGACTCGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCAC-CCTGGCCCCACCCAGCCCTGCAggtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCAC-CCTGGCCCCACCCAGCCCTGCAggtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAcAATGCCGCTCAGAACACCACAGAGCCACCCTG-GCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCA-CCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCA-CCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from GeneWise agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcaggtgaagaccctgctgctacaatgccgctcagaacaccacagagccaccctggccccacccagccctgcaggtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcataggaGATGTTTTGAATATTGACCCCTATGAAATTTTATACACATCTCTTCCAGACAC-GTTTACGTTACATGCAggtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from CESAR gtGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcataggaGATGTTTTGAATATTGACCCCTATGAAATTTTATACACATCTCTTCCAGACA-CGTTTACGTTACATGCAggtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCCtATGAAATTTTATACACATCTCTTCCAGACACG-TTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCCTATGAAATTTTATACACATCTCTTCCAGACAC-GTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Pairagon GTGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCCTATGAAATTTTATACACATCTCTTCCAGACAC-GTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCCTATGAAATTTTATACACATCTCTTCCAGACACGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCCTATGAAATTTTATACACATCTCTTCCAGACACGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from GeneWise GAAATTCTATACACATCTCTACAAGACACTGTTCACAT GTCACTGAAGACTGATTTAACCAAAGTTTTCTACCTTTgtgtcttcataggagatgttttgaatattgacccctatgaaattttatacacatctcttccagacacgtttacgttacatgcaggtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACAAggtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from CESAR GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACAAggtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Spaln_aa2Genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGGTG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATcCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACAAGGTAAgttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Spaln_nt2Genome GAGCTAAGTTATC-AAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Pairagon GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Exonerate_protein2genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Exonerate_coding2genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from GeneWise TATCAAGAA agaaagcactctcatttgttttgttccttcttctcttctcttcccttaaggaactaagttatccaagaaagtctccattgtgttcaaactgcttttcatatctttctggacaaggtaagttagtccatttggcctcctttcccctgtcactgaagACTGATTTA #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAA-ATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagtgGCTGAAAGTGGAGATATTCAGGCTGAACATGGTGGTGAGGCTTCAAGCCAAGCATGGAG-CTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAA-ATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagtgGCTGAAAGTGGAGATATTCAGGCTGAACATGGTGGTGAGGCTTCAAGCCAAGCATG-GAGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATATTCAGGCTGAACATGGTGGTGAGGCTTCAAGCCAAGCATGGAGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAA-ATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATATTCAGGCTGAACATGGTGGTGAGGCTTCAAGCCAAGCATGGA-GCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAA-ATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATATTCAGGCTGAACATGGTGGTGAGGCTTCAAGCCAAGCATGGA-GCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATATTCAGGCTGAACATGGTGGTGAGGCTTCAAGCCAAGCATGGAGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATATTCAGGCTGAACATGGTGGTGAGGCTTCAAGCCAAGCATGGAGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATATTCAGGCTGAACATGGTGGTGAGGCTTCAAGCCAAGCATGGAGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGA-GGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctcttctccaatgcccactgtcttagctaatgtgcattgttgccctttagatCACCTTTTCCATTGTCGATTCAACACCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGACGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAA-CCCTGTGTTCACTGCTTTCTGCGCCCCACCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtaaacccaaagcgtgaggcaagaaagaaggggacattagatttgtgatc Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGA-GGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctcttctccaatgcccactgtcttagctaatgtgcattgttgccctttagatCACCTTTTCCATTGTCGATTCAACACCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGACGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAG-GAACCCTGTGTTCACTGCTTTCTGCGCCCCACCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtaaacccaaagcgtgaggcaagaaagaaggggacattagatttgtgatc Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctcttctccaatgcccactgtcttagctaatgtgcattgttgccctttagATCACCTTTTCCATTGTCGATTCAACACCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGACGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAACCCTGTGTTCACTGCTTTCTGCGCCCCACCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaaacccaaagcgtgaggcaagaaagaaggggacattagatttgtgatc Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGA-GGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctcttctccaatgcccactgtcttagctaatgtgcattgttgccctttagATCACCTTTTCCATTGTCGATTCAACACCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGACGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGG-AACCCTGTGTTCACTGCTTTCTGCGCCCCACCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaaacccaaagcgtgaggcaagaaagaaggggacattagatttgtgatc Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGA-GGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctcttctccaatgcccactgtcttagctaatgtgcattgttgccctttagATCACCTTTTCCATTGTCGATTCAACACCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGACGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGG-AACCCTGTGTTCACTGCTTTCTGCGCCCCACCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaaacccaaagcgtgaggcaagaaagaaggggacattagatttgtgatc Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGA-GGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCA--GGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctcttctccaatgcccactgtcttagctaatgtgcattgttgccctttagATCACCTTTTCCATTGTCGATTCAACACCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGACGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGG---AACCCTGTGTTCACTGCTTTCTGCGCCCCACCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaaacccaaagcgtgaggcaagaaagaaggggacattagatttgtgatc Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGA-GGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCA--GGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctcttctccaatgcccactgtcttagctaatgtgcattgttgccctttagATCACCTTTTCCATTGTCGATTCAACACCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGACGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGG---AACCCTGTGTTCACTGCTTTCTGCGCCCCACCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaaacccaaagcgtgaggcaagaaagaaggggacattagatttgtgatc Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATT-CGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctcttctccaatgcccactgtcttagctaatgtgcattgttgccctttagATCACCTTTTCCATTGTCGATTCAACACCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGACGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGG-AACCCTGTGTTCACTGCTTTCTGCGCCCCACCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaaacccaaagcgtgaggcaagaaagaaggggacattagatttgtgatc #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCA-CCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCCTGTCACCTTCCGATTGAGGTCTGGTT-AGGCCCAGTTCGGATC---------CATCAGATTggtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCA-CCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCCTGTCACCTTCCGATTGAGGTCTGGT-TAGGCCCAGTTCGGATC---------CATCAGATTggtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCCTGTCACCTTCCGATTGAGGTCTGGTTAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCA-CCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCCTGTCACCTTCCGATTGAGGTCTGGTT-AGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCA-CCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCCTGTCACCTTCCGATTGAGGTCTGGTTA-GGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCCTGTCACCTTCCGATTGAGGTCTGGTTAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCCTGTCACCTTCCGATTGAGGTCTGGTTAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCCTGTCACCTTCCGATTGAGGTCTGGTTAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCAC-GACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATCGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGT-TTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCAC-GACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATCGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTG-TTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCAC-GACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATcGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTT-TGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCA-CGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATCGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGT-TTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCA-CGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATCGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGT-TTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCAC-GACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATCGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTTTGCCAGCCCATGGtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCAC-GACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATCGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTTTGCCAGCCCATGGtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from GeneWise CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGAT-CACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATCGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTT-TGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCC-CGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAG-TCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCC-CGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCA-GTCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCC-CGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCcCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGT-CTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCT-CCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAG-TCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCT-CCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAG-TCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCC-CGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCA--GATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGT---CTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Exonerate_coding2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTC---CCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGC--TCCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGC-AGTCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGTCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACCTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGggtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from CESAR AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACCTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGggtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Spaln_aa2Genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAAcCTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Spaln_nt2Genome AAAACTGGAAAAC-TGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACCTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCACG---TCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Pairagon AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACCTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCACG---TCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Exonerate_protein2genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACCTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Exonerate_coding2genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACCTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from GeneWise --------------------ACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagCCCCTCTCTCCTCTAGAAAACTGGAAAACCTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCC-CTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagtTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAG-ACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCC-CTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagtTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAA-GACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCC-TTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAG-ACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGG-CCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAG-ACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATAGTCCCAGTA-CTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccaagattgcccaagtcacccagactgcgctttttttttttttaacccagGAAAAGGCAACCATAGTCCCAGTACCTTGCCAATGTGGGCCCACTGGATCTGCAGAGCC-TAGGCCCAACCTTGAGGAAgtacacggtgactactgagaagatgggctgtcctaacaggggactcatgg Alignment from CESAR GAAAAGGCAACCATAGTCCCAGTA-CTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccaagattgcccaagtcacccagactgcgctttttttttttttaacccagGAAAAGGCAACCATAGTCCCAGTACCTTGCCAATGTGGGCCCACTGGATCTGCAGAGCC-TAGGCCCAACCTTGAGGAAgtacacggtgactactgagaagatgggctgtcctaacaggggactcatgg Alignment from Spaln_aa2Genome GAAAAGGCAACCATAGTCCCAGTA-CTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG------ ccaagattgcccaagtcacccagactgcgctttttttttttttaacccagGAAAAGGCAACCATAGTCCCAGTAcCTTGCCAATGTGGGCCCACTGGATCTGCAGAGCCTAGGCCCAACCTTGAGGAAGTACACGgtgactactgagaagatgggctgtcctaacaggggactcatgg Alignment from Spaln_nt2Genome GAAAAGGCAACCATAGTCCCAGTA-CTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccaagattgcccaagtcacccagactgcgctttttttttttttaacccagGAAAAGGCAACCATAGTCCCAGTACCTTGCCAATGTGGGCCCACTGGATCTGCAGAGCCT-AGGCCCAACCTTGAGGAAgtacacggtgactactgagaagatgggctgtcctaacaggggactcatgg Alignment from Pairagon GAAAAGGCAACCATAGTCCCAGTA-CTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccaagattgcccaagtcacccagactgcgctttttttttttttaacccagGAAAAGGCAACCATAGTCCCAGTACCTTGCCAATGTGGGCCCACTGGATCTGCAGAGCC-TAGGCCCAACCTTGAGGAAgtacacggtgactactgagaagatgggctgtcctaacaggggactcatgg Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTA-CTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAGGTGGAT ccaagattgcccaagtcacccagactgcgctttttttttttttaacccagGAAAAGGCAACCATAGTCCCAGTACCTTGCCAATGTGGGCCCACTGGATCTGCAGAGCCTAGGCCCAACCTTGAGGAAGTACACGgtgactactgagaagatgggctgtcctaacaggggactcatgg Alignment from Exonerate_coding2genome GAAAAGGCAACCATAGTCCCAGTA-CTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAGGTGGAT ccaagattgcccaagtcacccagactgcgctttttttttttttaacccagGAAAAGGCAACCATAGTCCCAGTACCTTGCCAATGTGGGCCCACTGGATCTGCAGAGCCTAGGCCCAACCTTGAGGAAGTACACGgtgactactgagaagatgggctgtcctaacaggggactcatgg Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccaagattgcccaagtcacccagactgcgctttttttttttttaacccagGAAAAGGCAACCATAGTCCCAGTACCTTGCCAATGTGGGCCCACTGGATCTGCAGAGCCTAGGCCCAACCTTGAGGAAgtacacggtgactactgagaagatgggctgtcctaacaggggactcatgg #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGCTGGCTTCTGAGCATGATTCAGAGCAAAT-TAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from CESAR ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGCTGGCTTCTGAGCATGATTCAGAGCAAA-TTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGCTGGCTTCTGAGCATGATTCAGAGCAAATTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGCTGGCTTCTGAGCATGATTCAGAGCAAAT-TAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Pairagon ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGCTGGCTTCTGAGCATGATTCAGAGCAAAT-TAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGCTGGCTTCTGAGCATGATTCAGAGCAAATTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGCTGGCTTCTGAGCATGATTCAGAGCAAATTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGCTGGCTTCTGAGCATGATTCAGAGCAAATTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACA-CGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACCGTGCTCATTTTTTTGTGGAGGATGCAACTA-TGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from CESAR TTTCACTATGAAAATACA-CGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACCGTGCTCATTTTTTTGTGGAGGATGCAACTATGG-TTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Spaln_aa2Genome TTTCACTATGAAAATACA-CGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACAcCGTGCTCATTTTTTTGTGGAGGATGCAACTAT-GGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACCGTGCTCATTTTTTTGTGGAGGATGCAACTA-TGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Pairagon TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACCGTGCTCATTTTTTTGTGGAGGATGCAACTA-TGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACCGTGCTCATTTTTTTGTGGAGGATGCAACTATGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACCGTGCTCATTTTTTTGTGGAGGATGCAACTATGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACCGTGCTCATTTTTTTGTGGAGGATGCAACTATGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTAT-GCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aatgactggactatgcatacttattggttaggttggcattcccgttgcaggTACTACGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCTGTATCGCCTACCACGATGGTGCTTGTTGCTCATTAAGCATCC-TTACAACCCTCAGAACCCTGTCaggcaagtgcatatgtttgaccctatctggaacccttacaacccccagaatc Alignment from CESAR gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTAT-GCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aatgactggactatgcatacttattggttaggttggcattcccgttgcaggTACTACGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCTGTATCGCCTACCACGATGGTGCTTGTTGCTCATTAAGCA-TCCTTACAACCCTCAGAACCCTGTCaggcaagtgcatatgtttgaccctatctggaacccttacaacccccagaatc Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatacttattggttaggttggcattcccgttgcagGTACTACGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCTGTATCGCCTACCACGATGGTGCTTGTTGCTCATTAAGCATCCTTACAACCCTCAGAACCCTGTCAGgcaagtgcatatgtttgaccctatctggaacccttacaacccccagaatc Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTAT-GCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatacttattggttaggttggcattcccgttgcagGTACTACGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCTGTATCGCCTACCACGATGGTGCTTGTTGCTCATTAAGCATCCT-TACAACCCTCAGAACCCTGTCAGgcaagtgcatatgtttgaccctatctggaacccttacaacccccagaatc Alignment from Pairagon GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTAT-GCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatacttattggttaggttggcattcccgttgcagGTACTACGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCTGTATCGCCTACCACGATGGTGCTTGTTGCTCATTAAGCA-TCCTTACAACCCTCAGAACCCTGTCAGgcaagtgcatatgtttgaccctatctggaacccttacaacccccagaatc Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTAT-GCCTACCATGATGGCGCCTGTTGCTCGCTAAGC--ATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatacttattggttaggttggcattcccgttgcagGTACTACGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCTGTATCGCCTACCACGATGGTGCTTGTTGCTCATTAAGCAT---CCTTACAACCCTCAGAACCCTGTCAGgcaagtgcatatgtttgaccctatctggaacccttacaacccccagaatc Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTAT-GCCTACCATGATGGCGCCTGTTGCTCGCTAAGC--ATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatacttattggttaggttggcattcccgttgcagGTACTACGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCTGTATCGCCTACCACGATGGTGCTTGTTGCTCATTAAGCAT---CCTTACAACCCTCAGAACCCTGTCAGgcaagtgcatatgtttgaccctatctggaacccttacaacccccagaatc Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCGA----------- aatgactggactatgcatacttattggttaggttggcattcccgttgcagGTACTACGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCTGTATCGCCTACCACGATGGTGCTTGTTGCTCATTAAGCATCCTTACAACCCTCAGAACCCTGTCAGGCAAGTGCATATgtttgaccctatctggaacccttacaacccccagaatc #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG agtactgttgccatttctgtcaggttactccccaccccccacccccccagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCACGACTACCTTGTGGTCTACCTGCGGCTGCTCACCT-AGGCTACCTACAACGGAAGAGCAAGTTCTTTGAGCACTTCATTGAAGGTGGCCGGACTGTTAAGGAGTTCTGTCAACAGgtaagtcctcctctatcactctgctttagggccctccttttctttctggg Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG agtactgttgccatttctgtcaggttactccccaccccccacccccccagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCACGACTACCTTGTGGTCTACCTGCGGCTGCTCACC-TAGGCTACCTACAACGGAAGAGCAAGTTCTTTGAGCACTTCATTGAAGGTGGCCGGACTGTTAAGGAGTTCTGTCAACAGgtaagtcctcctctatcactctgctttagggccctccttttctttctggg Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG agtactgttgccatttctgtcaggttactccccaccccccacccccccagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCACGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTAGGCTACCTACAACGGAAGAGCAAGTTCTTTGAGCACTTCATTGAAGGTGGCCGGACTGTTAAGGAGTTCTGTCAACAGgtaagtcctcctctatcactctgctttagggccctccttttctttctggg Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG agtactgttgccatttctgtcaggttactccccaccccccacccccccagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCACGACTACCTTGTGGTCTACCTGCGGCTGCTCACCT-AGGCTACCTACAACGGAAGAGCAAGTTCTTTGAGCACTTCATTGAAGGTGGCCGGACTGTTAAGGAGTTCTGTCAACAGgtaagtcctcctctatcactctgctttagggccctccttttctttctggg Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG agtactgttgccatttctgtcaggttactccccaccccccacccccccagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCACGACTACCTTGTGGTCTACCTGCGGCTGCTCACCT-AGGCTACCTACAACGGAAGAGCAAGTTCTTTGAGCACTTCATTGAAGGTGGCCGGACTGTTAAGGAGTTCTGTCAACAGgtaagtcctcctctatcactctgctttagggccctccttttctttctggg Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACC--TCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG agtactgttgccatttctgtcaggttactccccaccccccacccccccagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCACGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTA---GGCTACCTACAACGGAAGAGCAAGTTCTTTGAGCACTTCATTGAAGGTGGCCGGACTGTTAAGGAGTTCTGTCAACAGgtaagtcctcctctatcactctgctttagggccctccttttctttctggg Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTC---AGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG agtactgttgccatttctgtcaggttactccccaccccccacccccccagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACC--TCACGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTA-GGCTACCTACAACGGAAGAGCAAGTTCTTTGAGCACTTCATTGAAGGTGGCCGGACTGTTAAGGAGTTCTGTCAACAGgtaagtcctcctctatcactctgctttagggccctccttttctttctggg Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG agtactgttgccatttctgtcaggttactccccaccccccacccccccagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCACGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTAGGCTACCTACAACGGAAGAGCAAGTTCTTTGAGCACTTCATTGAAGGTGGCCGGACTGTTAAGGAGTTCTGTCAACAGgtaagtcctcctctatcactctgctttagggccctccttttctttctggg #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGT-GTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt ggctctctgaggaactataatactagaattgtcttctctccttcccacagagCCACTAGACGTGGTGGGTCGTCGTGATGCAATATGTCAATGGAGCTATCACAACACACC-GCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from CESAR agCCACTGGACGTGGTGGGTCGT-GTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt ggctctctgaggaactataatactagaattgtcttctctccttcccacagagCCACTAGACGTGGTGGGTCGTCGTGATGCAATATGTCAATGGAGCTATCACAACACAC-CGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTCGTGATGCAATATGTCAATGGAGCTATCACAACACACCGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGT-GTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTCGTGATGCAATATGTCAATGGAGCTATCACAACACACC-GCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGT-GTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTCGTGATGCAATATGTCAATGGAGCTATCACAACACACC-GCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGT-GTGATGCAGTATGTCAATGGAGCTACCACAACACAC--CAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTCGTGATGCAATATGTCAATGGAGCTATCACAACACACCG---CTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGT---GATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGT--CGTGATGCAATATGTCAATGGAGCTATCACAACACACCG-CTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTCGTGATGCAATATGTCAATGGAGCTATCACAACACACCGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTT-GTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagcTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTCGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACA-GCGTTTCCTCATCATTCTCCTAggtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTT-GTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagcTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTCGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTAC-AGCGTTTCCTCATCATTCTCCTAggtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGT-TTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTtTTTTTCGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACAG-CGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCG-TTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTCGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACA-GCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTT-GTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTCGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACA-GCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGT-TTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTAC--ATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTCGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACAG---CGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Exonerate_coding2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGT-TTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTAC--ATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTCGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACAG---CGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTCGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACAGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagatCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTG-TGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagatCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGT-GTGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAAcGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGT-GATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTG-TGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTG-TGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGTGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGTGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGTGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtctccctccctttcccttctatttccttcttccctgtttctcccaaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTT-TTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtctccctccctttcccttctatttccttcttccctgtttctcccaaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTC-TTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGG-CCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTC-TTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCC-TGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTC-TTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtaagttttgaacacatttcattaccttctcagacattgcaacacaggac #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAAT-TCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATCTCAGAGGGACCCAGTGGGAAGTGGAGTT-GGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAAT-TCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATCTCAGAGGGACCCAGTGGGAAGTGGA-GTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATCTCAGAGGGACCCAGTGGGAAGTGGAGTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAAT-TCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATCTCAGAGGGACCCAGTGGGAAGTGGAGT-TGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAAT-TCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATCTCAGAGGGACCCAGTGGGAAGTGGAGT-TGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATCTCAGAGGGACCCAGTGGGAAGTGGAGTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATCTCAGAGGGACCCAGTGGGAAGTGGAGTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from GeneWise CAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacaggcagCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATCTCAGAGGGACCCAGTGGGAAGTGGAGTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGC-GGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagaCTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCTCCCT-GGTGCATCCTACGCCTGAAAATGCAGCAggtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGC-GGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagaCTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCTC-CCTGGTGCATCCTACGCCTGAAAATGCAGCAggtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCTCCCTGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGG-CGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCTCCC-TGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGG-CGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCTCCC-TGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCTCCCTGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCTCCCTGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAGGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCTCCCTGGTGCATCCTACGCCTGAAAATGCAGCAGGTGAgtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAG-AATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGCAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTG-CCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGaggtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAG-AATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGCAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGT-GCCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGaggtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGCAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGCCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAG-AATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGCAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTG-CCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAG-AATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGCAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTG-CCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGCAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGCCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_coding2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGCAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGCCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGCAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGCCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGG-CGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGG-GCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGG-CGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTG-GGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGC-GCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGG-GCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGG-CGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGG-GCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from GeneWise ---CATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG gggaagaaacaaacttctccccctgttgttcatgggcttctttcccacagcCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCTCCCCGCGATGAATGGGTCTTTGCTGACATGCGATCTACTTCACCGAGTGGTAGCCCCGGGGG-TCGTATGGCTCTCAAGCTTCACCAGgtgagtggtataggccaggcagagtaggaggcaggtgtgagatatgcctt Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG gggaagaaacaaacttctccccctgttgttcatgggcttctttcccacagcCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCTCCCCGCGATGAATGGGTCTTTGCTGACATGCGATCTACTTCACCGAGTGGTAGCCCCGGGGG-TCGTATGGCTCTCAAGCTTCACCAGgtgagtggtataggccaggcagagtaggaggcaggtgtgagatatgcctt Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG gggaagaaacaaacttctccccctgttgttcatgggcttctttcccacagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCTCCCCGCGATGAATGGGTCTTTGCTGACATGCGATCTACTTCACCGAGTGGTAGCCCCGGGGGTCGTATGGCTCTCAAGCTTCACCAGgtgagtggtataggccaggcagagtaggaggcaggtgtgagatatgcctt Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG gggaagaaacaaacttctccccctgttgttcatgggcttctttcccacagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCTCCCCGCGATGAATGGGTCTTTGCTGACATGCGATCTACTTCACCGAGTGGTAGCCCCGGGGGT-CGTATGGCTCTCAAGCTTCACCAGgtgagtggtataggccaggcagagtaggaggcaggtgtgagatatgcctt Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG gggaagaaacaaacttctccccctgttgttcatgggcttctttcccacagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCTCCCCGCGATGAATGGGTCTTTGCTGACATGCGATCTACTTCACCGAGTGGTAGCCCC-GGGGGTCGTATGGCTCTCAAGCTTCACCAGgtgagtggtataggccaggcagagtaggaggcaggtgtgagatatgcctt Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG gggaagaaacaaacttctccccctgttgttcatgggcttctttcccacagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCTCCCCGCGATGAATGGGTCTTTGCTGACATGCGATCTACTTCACCGAGTGGTAGCCCCGGGGGTCGTATGGCTCTCAAGCTTCACCAGgtgagtggtataggccaggcagagtaggaggcaggtgtgagatatgcctt Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG gggaagaaacaaacttctccccctgttgttcatgggcttctttcccacagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCTCCCCGCGATGAATGGGTCTTTGCTGACATGCGATCTACTTCACCGAGTGGTAGCCCCGGGGGTCGTATGGCTCTCAAGCTTCACCAGgtgagtggtataggccaggcagagtaggaggcaggtgtgagatatgcctt Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG gggaagaaacaaacttctccccctgttgttcatgggcttctttcccacagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCTCCCCGCGATGAATGGGTCTTTGCTGACATGCGATCTACTTCACCGAGTGGTAGCCCCGGGGGTCGTATGGCTCTCAAGCTTCACCAGgtgagtggtataggccaggcagagtaggaggcaggtgtgagatatgcctt #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGT-GGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTG-TGTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTG-TGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTG-TGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGC-CCTCAAGTTCTGGGAGAGGGACTACaagtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGC-CCTCAAGTTCTGGGAGAGGGACTACaagtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGG-CAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGG-CCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGG-CAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGG-CCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCA-TGCCAGCACTGTCTTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTC-ATGCCAGCACTGTCTTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCATGCCAGCACTGTCTTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCA-TGCCAGCACTGTCTTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCA-TGCCAGCACTGTCTTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCATGCCAGCACTGTCTTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCATGCCAGCACTGTCTTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCATGCCAGCACTGTCTTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTC-GTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg gcctcacaggagggcaagcttgctggtcatatgttcttgttctctcaaagtaTTCACCTTATGCTTTCCATTTCGTATTCCTTCTGGGGCTCCTGCCCCAGGTCA-CACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAggtaagttgcacccaggatggtctttgtacaggggggatagtctacaggag Alignment from CESAR tgTTCACCTTATGCTTTCCG-TTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg gcctcacaggagggcaagcttgctggtcatatgttcttgttctctcaaagtaTTCACCTTATGCTTTCCATTTCGTATTCCTTCTGGGGCTCCTGCCCCAGG-TCACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAggtaagttgcacccaggatggtctttgtacaggggggatagtctacaggag Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gcctcacaggagggcaagcttgctggtcatatgttcttgttctctcaaagTATTCACCTTATGCTTTCCATTTCGTATTCCTTCTGGGGCTCCTGCCCCAGGTCACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtaagttgcacccaggatggtctttgtacaggggggatagtctacaggag Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTT-CGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gcctcacaggagggcaagcttgctggtcatatgttcttgttctctcaaagTATTCACCTTATGCTTTCCATTTCGTATTCCTTCTGGGGCTCCTGCCCCAGGTC-ACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtaagttgcacccaggatggtctttgtacaggggggatagtctacaggag Alignment from Pairagon TGTTCACCTTATGCTTTCCG-TTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gcctcacaggagggcaagcttgctggtcatatgttcttgttctctcaaagTATTCACCTTATGCTTTCCATTTCGTATTCCTTCTGGGGCTCCTGCCCCAGGTC-ACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtaagttgcacccaggatggtctttgtacaggggggatagtctacaggag Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gcctcacaggagggcaagcttgctggtcatatgttcttgttctctcaaagTATTCACCTTATGCTTTCCATTTCGTATTCCTTCTGGGGCTCCTGCCCCAGGTCACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtaagttgcacccaggatggtctttgtacaggggggatagtctacaggag Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gcctcacaggagggcaagcttgctggtcatatgttcttgttctctcaaagTATTCACCTTATGCTTTCCATTTCGTATTCCTTCTGGGGCTCCTGCCCCAGGTCACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtaagttgcacccaggatggtctttgtacaggggggatagtctacaggag Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gcctcacaggagggcaagcttgctggtcatatgttcttgttctctcaaagTATTCACCTTATGCTTTCCATTTCGTATTCCTTCTGGGGCTCCTGCCCCAGGTCACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtaagttgcacccaggatggtctttgtacaggggggatagtctacaggag #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACCGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCA-GGGCTCACCACCTaggtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACCGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTC-AGGGCTCACCACCTaggtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAGCAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGAcCGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCAGGGCTCACCACCTAGGTAGgtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACCGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCA-GGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACCGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCA-GGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAGCAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACCGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCAGGGCTCACCACCTAGGTAGgtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGA-CGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAGCAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACCGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCAGGGCTCACCACCTAGGTAGgtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATC-CGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG------------------------------GGCTCA---------------------CCACCT gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACCGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCAGGGCTCACCACCTAGGTAGGTATCTGTCCCATGGTTCCAGTATAGAAGGGGCAACTGGGCCTCCT #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGC-CTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTG-GAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGC-CTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACT-GGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCC-TGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTG-GAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTG-CCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTG-GAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCT---GGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGC--CCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGG-AACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCG-GTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCACGTGCATCCTGGCTATGGATTTCTCTCAG-GCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAggtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from CESAR GAAAATGGTGTAGATGCG-GTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCACGTGCATCCTGGCTATGGATTTCTCTCA-GGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAggtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCG-GTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAcGTGCATCCTGGCTATGGATTTCTCTCAGG-CGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCG-GTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCACGTGCATCCTGGCTATGGATTTCTCTCAG-GCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Pairagon GAAAATGGTGTAGATGCG-GTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCACGTGCATCCTGGCTATGGATTTCTCTCAG-GCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCACGTGCATCCTGGCTATGGATTTCTCTCAGGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGA-TGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCACGTGCATCCTGGCTATGGATTTCTCTCAGG-CGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCA--------------------------------------------------- gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCACGTGCATCCTGGCTATGGATTTCTCTCAGGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGGTAAGTTAGGAAGCCCTCCCCTGGCAGGGAGAGACAGTCTGGGTATTCTG #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGC-TTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctataggtGTTCCAGTGGTCCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTCTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTG-GGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTC-CCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctataggtGTTCCAGTGGTCCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTCTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTG-GGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTCTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGG-CTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTCTCCCCTATTATTTTCAAGGCTGCCTATGGAGGT-GGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGG-CTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTCTCCCCTATTATTTTCAAGGCTGCCTATGGAGGT-GGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTCTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Exonerate_coding2genome GCAGGCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGT----GTTCCAGTGGTCCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTCTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTCTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCC-GAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGG-GAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAggtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCC-GAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTG-GGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAggtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCC-GAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCcGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGG-AAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCC-GAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGG-GAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACT-CCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGG-GAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAAT-GGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg accctggactcctgggagcagccatgacaagaactttctcaacttctcaggaCATGTCATGGTGAATCGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTC-TGTAGATCCTGCTGTTCCTGCAGTGCCTATAggtagggtatggtacatttttaacaccttaatgggaacacgggagatggct Alignment from CESAR gaCATGTCATGGTGAAT-GGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg accctggactcctgggagcagccatgacaagaactttctcaacttctcaggaCATGTCATGGTGAATCGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCA-GTCTGTAGATCCTGCTGTTCCTGCAGTGCCTATAggtagggtatggtacatttttaacaccttaatgggaacacgggagatggct Alignment from Spaln_aa2Genome GACATGTCATGGTGAAT-GGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctgggagcagccatgacaagaactttctcaacttctcagGACATGTCATGGTGAATcGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCT-GTAGATCCTGCTGTTCCTGCAGTGCCTATAGgtagggtatggtacatttttaacaccttaatgggaacacgggagatggct Alignment from Spaln_nt2Genome GACATGTCATGGTGAAT-GGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctgggagcagccatgacaagaactttctcaacttctcagGACATGTCATGGTGAATCGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTC-TGTAGATCCTGCTGTTCCTGCAGTGCCTATAGgtagggtatggtacatttttaacaccttaatgggaacacgggagatggct Alignment from Pairagon GACATGTCATGGTGAAT-GGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctgggagcagccatgacaagaactttctcaacttctcagGACATGTCATGGTGAATCGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGT-CTGTAGATCCTGCTGTTCCTGCAGTGCCTATAGgtagggtatggtacatttttaacaccttaatgggaacacgggagatggct Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctgggagcagccatgacaagaactttctcaacttctcagGACATGTCATGGTGAATCGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCTGTAGATCCTGCTGTTCCTGCAGTGCCTATAGgtagggtatggtacatttttaacaccttaatgggaacacgggagatggct Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctgggagcagccatgacaagaactttctcaacttctcagGACATGTCATGGTGAATCGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCTGTAGATCCTGCTGTTCCTGCAGTGCCTATAGgtagggtatggtacatttttaacaccttaatgggaacacgggagatggct Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctgggagcagccatgacaagaactttctcaacttctcagGACATGTCATGGTGAATCGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCTGTAGATCCTGCTGTTCCTGCAGTGCCTATAGgtagggtatggtacatttttaacaccttaatgggaacacgggagatggct #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCAC-CAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa acgggagatggcttctgtaagacaggcatggcttctctgtgattctgcaggcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTTCGGAATCACCCATGGGCTGCTGTTGATGGACACAACGTTCCGGGATGCTC-CCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACGTTTGATGTTGCGATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTTATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCaagtaagactgagtctgctcagaccacagcagtggactcccaagggtcttta Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCAC-CAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa acgggagatggcttctgtaagacaggcatggcttctctgtgattctgcaggcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTTCGGAATCACCCATGGGCTGCTGTTGATGGACACAACGTTCCGGGATGCT-CCCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACGTTTGATGTTGCGATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTTATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCaagtaagactgagtctgctcagaccacagcagtggactcccaagggtcttta Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA acgggagatggcttctgtaagacaggcatggcttctctgtgattctgcagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTTCGGAATCACCCATGGGCTGCTGTTGATGGACACAACGTTCCGGGATGCTCCCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACGTTTGATGTTGCGATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTTATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtaagactgagtctgctcagaccacagcagtggactcccaagggtcttta Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCA-CCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA acgggagatggcttctgtaagacaggcatggcttctctgtgattctgcagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTTCGGAATCACCCATGGGCTGCTGTTGATGGACACAACGTTCCGGGATGCTC-CCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACGTTTGATGTTGCGATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTTATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtaagactgagtctgctcagaccacagcagtggactcccaagggtcttta Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCA-CCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA acgggagatggcttctgtaagacaggcatggcttctctgtgattctgcagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTTCGGAATCACCCATGGGCTGCTGTTGATGGACACAACGTTCCGGGATGCTC-CCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACGTTTGATGTTGCGATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTTATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtaagactgagtctgctcagaccacagcagtggactcccaagggtcttta Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCAC-CAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCC--CACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA acgggagatggcttctgtaagacaggcatggcttctctgtgattctgcagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTTCGGAATCACCCATGGGCTGCTGTTGATGGACACAACGTTCCGGGATGCTCC---CAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACGTTTGATGTTGCGATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTTATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtaagactgagtctgctcagaccacagcagtggactcccaagggtcttta Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCAC-CAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCC--CACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA acgggagatggcttctgtaagacaggcatggcttctctgtgattctgcagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTTCGGAATCACCCATGGGCTGCTGTTGATGGACACAACGTTCCGGGATGCTCC---CAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACGTTTGATGTTGCGATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTTATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtaagactgagtctgctcagaccacagcagtggactcccaagggtcttta Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA acgggagatggcttctgtaagacaggcatggcttctctgtgattctgcagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTTCGGAATCACCCATGGGCTGCTGTTGATGGACACAACGTTCCGGGATGCTCCCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACGTTTGATGTTGCGATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTTATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTACGCTGACAATGTGGTCTTCAAgtaagactgagtctgctcagaccacagcagtggactcccaagggtcttta #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAAC-ATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTATTTGCCGAACCATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGG-TGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctaattgttct Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAAC-ATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTATTTGCCGAACCATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTG-GGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattcacccacagtt Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTATTTGCCGAACCATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctaattgttct Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAA-CATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTATTTGCCGAACCATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCT-GGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctaattgttct Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAA-CATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTATTTGCCGAACCATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCT-GGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctaattgttct Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTATTTGCCGAACCATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctaattgttct Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTATTTGCCGAACCATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctaattgttct Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGAGTCTTTGACTCCCTCAACTATTTGCCGAACCATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctaattgttct #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCC-CAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggcgctcgcctggcatccttattctccatctctccccttctagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGG-AGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCGCATGGAGGTTTCCCTAAGCCGTTTCATTCTAAAgtgaggcaggtgcatcgtggtgggacaggggcttgcaccaagaaccttct Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCC-CAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggcgctcgcctggcatccttattctccatctctccccttctagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCCAGTTCATGGTGCAGAATGGGTCAAGCCGG-GAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCGCATGGAGGTTTCCCTAAGCCGTTTCATTCTAAAgtgaggcaggtgcatcgtggtgggacaggggcttgcaccaagaaccttct Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggcgctcgcctggcatccttattctccatctctccccttctagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGGAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCGCATGGAGGTTTCCCTAAGCCGTTTCATTCTAAAgtgaggcaggtgcatcgtggtgggacaggggcttgcaccaagaaccttct Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGG-CCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggcgctcgcctggcatccttattctccatctctccccttctagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGG-AGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCGCATGGAGGTTTCCCTAAGCCGTTTCATTCTAAAgtgaggcaggtgcatcgtggtgggacaggggcttgcaccaagaaccttct Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGG-CCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCT----------------------------------------------------- tacctctggcgctcgcctggcatccttattctccatctctccccttctagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGG-AGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCGCATGGAGGTTTCCCTAAGCCGTTTCATTCTAAAGTGAGGCAGGTGCATCGTGGTGGGACAGGGGCTTGCACCAAGAACCTTCT Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggcgctcgcctggcatccttattctccatctctccccttctagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGGAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCGCATGGAGGTTTCCCTAAGCCGTTTCATTCTAAAgtgaggcaggtgcatcgtggtgggacaggggcttgcaccaagaaccttct Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggcgctcgcctggcatccttattctccatctctccccttctagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGGAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCGCATGGAGGTTTCCCTAAGCCGTTTCATTCTAAAgtgaggcaggtgcatcgtggtgggacaggggcttgcaccaagaaccttct Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCT----------------------------------------------------- tacctctggcgctcgcctggcatccttattctccatctctccccttctagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGGAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCGCATGGAGGTTTCCCTAAGCCGTTTCATTCTAAAGTGAGGCAGGTGCATCGTGGTGGGACAGGGGCTTGCACCAAGAACCTTCT #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCA-GAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagcGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCACGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTG-GGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCA-GAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagcGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCACGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCT-GGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCACGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCA-GAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCACGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTG-GGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCA-GAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCACGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTG-GGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCACGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCACGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAGGAACTAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCACGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAG---GCAAgtacccctccctgggcagcattgcctcatctcacccatcagtg #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAA-TCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAACTCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCT-CCTTTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from CESAR GGGAAGCAGACAAAA-TCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAACTCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAG-GCTCCTTTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAA-TCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAAcTCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTC-CTTTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAA-TCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAACTCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGC-TCCTTTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Pairagon GGGAAGCAGACAAAA-TCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAACTCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGC-TCCTTTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Exonerate_protein2genome GGGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGC--TTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAACTCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTC---CTTTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Exonerate_coding2genome GGGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGC--TTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAACTCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTC---CTTTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAACTCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTCCTTTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTG-AAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTG-CTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAAcgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTG-AAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTG-CTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAAcgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTG-AAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCA------GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGC-TTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCT-GAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGC------CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTG-CTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTG-AAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTT-----TTGGGGAGGAGTCAGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCT---GAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATG--ATCCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGC-TTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGC-TTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTT-TCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from CESAR GTCTTTTCTAAGTACCTCAGC-TTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTT-TCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTTCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAG-CTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTT-TCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Pairagon GTCTTTTCTAAGTACCTCAG-CTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTT-TCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTTCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTTCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTTCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACC-TACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttctgtgtcatctaaagtctgaatggctctgtctgtttcatgttccagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCCTACCACAACTGGCGGCATGGATCCAATGTGGGGCATA-TATGTTCCCTTTGTTAATGgtaggtactgatgcaagccattaaaagtctttgtaactctgaatactgtc Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACC-TACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttctgtgtcatctaaagtctgaatggctctgtctgtttcatgttccagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCCTACCACAACTGGCGGCATGGATCCAATGTGGGGCAT-ATATGTTCCCTTTGTTAATGgtaggtactgatgcaagccattaaaagtctttgtaactctgaatactgtc Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACC-TACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttctgtgtcatctaaagtctgaatggctctgtctgtttcatgttccagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCcTACCACAACTGGCGGCATGGATCCAATGTGGGGCATAT-ATGTTCCCTTTGTTAATGgtaggtactgatgcaagccattaaaagtctttgtaactctgaatactgtc Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCAC-CTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttctgtgtcatctaaagtctgaatggctctgtctgtttcatgttccagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCCTACCACAACTGGCGGCATGGATCCAATGTGGGGCATA-TATGTTCCCTTTGTTAATGgtaggtactgatgcaagccattaaaagtctttgtaactctgaatactgtc Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCA-CCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttctgtgtcatctaaagtctgaatggctctgtctgtttcatgttccagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCCTACCACAACTGGCGGCATGGATCCAATGTGGGGCATA-TATGTTCCCTTTGTTAATGgtaggtactgatgcaagccattaaaagtctttgtaactctgaatactgtc Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACC-TACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAAT tgttctgtgtcatctaaagtctgaatggctctgtctgtttcatgttccagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCCTACCACAACTGGCGGCATGGATCCAATGTGGGGCATATATGTTCCCTTTGTTAATGgtaggtactgatgcaagccattaaaagtctttgtaactctgaatactgtc Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACC-TACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAAT tgttctgtgtcatctaaagtctgaatggctctgtctgtttcatgttccagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCCTACCACAACTGGCGGCATGGATCCAATGTGGGGCATATATGTTCCCTTTGTTAATGgtaggtactgatgcaagccattaaaagtctttgtaactctgaatactgtc Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttctgtgtcatctaaagtctgaatggctctgtctgtttcatgttccagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCCTACCACAACTGGCGGCATGGATCCAATGTGGGGCATATATGTTCCCTTTGTTAATGgtaggtactgatgcaagccattaaaagtctttgtaactctgaatactgtc #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcaggTCTGTCATAGACACAATGCCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCA-TGACAACTTGCAGTTCATGATGGGTCATGAGCAGCTCTCCTCTGACaggtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from CESAR gTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcaggTCTGTCATAGACACAATGCCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCA-TGACAACTTGCAGTTCATGATGGGTCATGAGCAGCTCTCCTCTGACaggtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGcCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCAT-GACAACTTGCAGTTCATGATGGGTCATGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCA-TGACAACTTGCAGTTCATGATGGGTCATGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Pairagon GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCA-TGACAACTTGCAGTTCATGATGGGTCATGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTC--ATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCAT---GACAACTTGCAGTTCATGATGGGTCATGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTC--ATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCAT---GACAACTTGCAGTTCATGATGGGTCATGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from GeneWise GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCAT-GACAACTTGCAGTTCATGATGGGTCATGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCG-CTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagctCACCACAAAGCCTTCAACACACCTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTG-GAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from CESAR ctCACCACAAAGCCTTCAACCCG-CTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagctCACCACAAAGCCTTCAACACACCTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCT-GGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACCTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGC-TTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACCTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTG-GAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Pairagon CTCACCACAAAGCCTTCAACCCG-CTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACCTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTG-GAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACCTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACCTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from GeneWise CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACCTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAG-ATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAACATAGAGACCTACTACTTGCCAGATGGGG-GCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAG-ATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAACATAGAGACCTACTACTTGCCAGATG-GGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAACATAGAGACCTACTACTTGCCAGATGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAG-ATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAACATAGAGACCTACTACTTGCCAGAT-GGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAG-ATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAACATAGAGACCTACTACTTGCCAGAT-GGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAACATAGAGACCTACTACTTGCCAGATGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAACATAGAGACCTACTACTTGCCAGATGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAACATAGAGACCTACTACTTGCCAGATGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGC-CACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGG-CAGCAGCCGCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGC-CACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCCACAGTGCCAGTGCAGGCCCAGGAAGCC-GGGCAGCAGCCGCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGCAGCAGCCGCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGC-CACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCCACAGTGCCAGTGCAGGCCCAGGAAG-CCGGGCAGCAGCCGCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTG-CCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCCACAGTGCCAGTGCAGGCCCAGGAAGCC-GGGCAGCAGCCGCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGCAGCAGCCGCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGCAGCAGCCGCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGCAGCAGCCGCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct #### Pitpnm1_ID318_15 --> 2 - 1 Original Alignment ctGACACTTTGCAAACCCATTCGAGTCTC-TTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagctGAGACTTTGCCAACTCGTTCAAGTCTCCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCA-CTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACagtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from CESAR ctGACACTTTGCAAACCCATTCGAGTCTC-TTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagctGAGACTTTGCCAACTCGTTCAAGTCTCCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCA-CTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACagtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Spaln_aa2Genome CTGACACTTTGCAAACCCATTCGAGTCTC-TTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACC--TCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCcTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACTcaACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Spaln_nt2Genome CTGACACTTTGCAAACCCATTCGAGTCTC-TTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCA-CTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Pairagon CTGACACTTTGCAAACCCATTCGAGTCT-CTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCA-CTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Exonerate_protein2genome CTGACACTTTGCAAACCCATTCGAGTCTC-TTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACC--TCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Exonerate_coding2genome CTGACACTTTGCAAACCCATTCGAGTCTC-TTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACC--TCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from GeneWise CTGACACTTTGCAAACCCATTCGAGT-CTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACC--TCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGC-CCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACC-CTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCC-GAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCAC-CCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGC-CCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCcCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCC-TTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCC-GAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACC-CTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCC-GAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACC-CTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGC-CCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCAC--CTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCC---TTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGC-CCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCAC--CTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCC---TTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment GTGGATGTCTACGTCATGACA-CAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag aagtcggtaaacaggagtgttgtcttcatacccgactcccccccacccagGTTGATGTCTATGTCATGACACCAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAG-GGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGCCCTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtatggaggtcagcaggtatctgggctcctgtgaagctgggcactgccaa Alignment from CESAR GTGGATGTCTACGTCATGACA-CAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag aagtcggtaaacaggagtgttgtcttcatacccgactcccccccacccagGTTGATGTCTATGTCATGACACCAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACA-GGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGCCCTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtatggaggtcagcaggtatctgggctcctgtgaagctgggcactgccaa Alignment from Spaln_aa2Genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagtcggtaaacaggagtgttgtcttcatacccgactcccccccacccagGTTGATGTCTATGTCATGACACCAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGCCCTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtatggaggtcagcaggtatctgggctcctgtgaagctgggcactgccaa Alignment from Spaln_nt2Genome GTGGATGTCTACGTCATGACA-CAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagtcggtaaacaggagtgttgtcttcatacccgactcccccccacccagGTTGATGTCTATGTCATGACACCAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAG-GGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGCCCTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtatggaggtcagcaggtatctgggctcctgtgaagctgggcactgccaa Alignment from Pairagon GTGGATGTCTACGTCATGACA-CAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagtcggtaaacaggagtgttgtcttcatacccgactcccccccacccagGTTGATGTCTATGTCATGACACCAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAG-GGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGCCCTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtatggaggtcagcaggtatctgggctcctgtgaagctgggcactgccaa Alignment from Exonerate_protein2genome GTGGATGTCTACGTCATGACA-CAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACA--GAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagtcggtaaacaggagtgttgtcttcatacccgactcccccccacccagGTTGATGTCTATGTCATGACACCAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGG---GTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGCCCTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtatggaggtcagcaggtatctgggctcctgtgaagctgggcactgccaa Alignment from Exonerate_coding2genome GTGGATGTCTACGTCATGACA-CAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACA--GAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagtcggtaaacaggagtgttgtcttcatacccgactcccccccacccagGTTGATGTCTATGTCATGACACCAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGG---GTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGCCCTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtatggaggtcagcaggtatctgggctcctgtgaagctgggcactgccaa Alignment from GeneWise GTGGATGTCTACGTCATG-ACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagtcggtaaacaggagtgttgtcttcatacccgactcccccccacccagGTTGATGTCTATGTCATGACACCAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGG-GTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGCCCTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtatggaggtcagcaggtatctgggctcctgtgaagctgggcactgccaa #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGC-ATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCCATCGATGGTTCTTTCACTGCCAGTGTCTCTA-CATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGaggtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGC-ATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCCATCGATGGTTCTTTCACTGCCAGTGTCTCT-ACATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGaggtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCCATCGATGGTTCTTTCACTGCCAGTGTCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAG-CATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCCATCGATGGTTCTTTCACTGCCAGTGTCTCTA-CATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAG-CATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCCATCGATGGTTCTTTCACTGCCAGTGTCTCTA-CATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Exonerate_protein2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCCATCGATGGTTCTTTCACTGCCAGTGTCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Exonerate_coding2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAG---CATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCTTC--AGCCATCGATGGTTCTTTCACTGCCAGTGTCTCTAC-ATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCCATCGATGGTTCTTTCACTGCCAGTGTCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATT-GTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttaggCACTGGCAGGACTCTGGCTACTTGATTCGTGTATGTAACTGGCCGGCCGGATATGC-AAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATT-GTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttaggCACTGGCAGGACTCTGGCTACTTGATTCGTGTATGTAACTGGCCGGCCGGATATGC-AAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTCGTGTATGTAACTGGCCGGCCGGATATGCAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATT-GTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTCGTGTATGTAACTGGCCGGCCGGATATGC-AAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATT-GTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTCGTGTATGTAACTGGCCGGCCGGATATGC-AAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Exonerate_protein2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTCGTGTATGTAACTGGCCGGCCGGATATGCAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Exonerate_coding2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTCGTGTATGTAACTGGCCGGCCGGATATGCAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTCGTGTATGTAACTGGCCGGCCGGATATGCAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGA-TATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGACTATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGC-CTCTCCGAGCCAGACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from CESAR GTAGAACTGAACATCGTGGCTGGA-TATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGACTATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGG-CCTCTCCGAGCCAGACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGA-TATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGAcTATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCC-TCTCCGAGCCAGACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGA-TATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGACTATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGC-CTCTCCGAGCCAGACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGA-TATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGACTATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGC-CTCTCCGAGCCAGACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Exonerate_protein2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGACTATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCCTCTCCGAGCCAGACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Exonerate_coding2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGACTATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCCTCTCCGAGCCAGACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGACTATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCCTCTCCGAGCCAGACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga #### Pkd2l1_ID8954_14 --> 1 - 0 Original Alignment gCTCACAAGGAGAGTTCTG-CAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acatccagacaccattttagtttcctcattgtctgttgtttatctttcaggCTCACAAGGAGAGTATTGCCAGCTGCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTG-TGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcacacagagttagctactactggagtccat Alignment from CESAR gCTCACAAGGAGAGTTCTG-CAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acatccagacaccattttagtttcctcattgtctgttgtttatctttcaggCTCACAAGGAGAGTATTGCCAGCTGCAATGTATTCTGGAAGGAGTTGTGTCCCAGATT-GTGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcacacagagttagctactactggagtccat Alignment from Spaln_aa2Genome GCTCACAAGGAGAGTTCTG-CAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acatccagacaccattttagtttcctcattgtctgttgtttatctttcagGCTCACAAGGAGAGTATTGcCAGCTGCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTGT-GCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcacacagagttagctactactggagtccat Alignment from Spaln_nt2Genome GCTCACAAGGAGAGTTCTGC-AGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acatccagacaccattttagtttcctcattgtctgttgtttatctttcagGCTCACAAGGAGAGTATTGCCAGCTGCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTG-TGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcacacagagttagctactactggagtccat Alignment from Pairagon GCTCACAAGGAGAGTTCTG-CAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acatccagacaccattttagtttcctcattgtctgttgtttatctttcagGCTCACAAGGAGAGTATTGCCAGCTGCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTG-TGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcacacagagttagctactactggagtccat Alignment from Exonerate_protein2genome GCTCACAAGGAGAGTTCTG-CAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATT--GATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acatccagacaccattttagtttcctcattgtctgttgtttatctttcagGCTCACAAGGAGAGTATTGCCAGCTGCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTGT---GCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcacacagagttagctactactggagtccat Alignment from Exonerate_coding2genome GCTCACAAGGAGAGTTCTG-CAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acatccagacaccattttagtttcctcattgtctgttgtttatctttcagGCTCACAAGGAGAGTATTGCCAGCTGCAATGTATTCTGGAAGGAGTTGTGTCCCAGATT-GTGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcacacagagttagctactactggagtccat Alignment from GeneWise GCTCACAAGGAGAGTT-CTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acatccagacaccattttagtttcctcattgtctgttgtttatctttcagGCTCACAAGGAGAGTATTGCCAGCTGCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTGT-GCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcacacagagttagctactactggagtccat #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTC-GCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGG-AAACTTTAGCACTTTTGTCAAGTGCatgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTC-GCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGG-AAACTTTAGCACTTTTGTCAAGTGCatgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTC-GCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCcGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGA-AACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTT-CGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAA-CTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTT-CGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGG-AAACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTC-GCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTG--GAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGA---AACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGC---TTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTC--CGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGA-AACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTC-GCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGA-AACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATCGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCC-GCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATCGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTC-CGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATcGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCG-CAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATCGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCC-GCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATCGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCC-GCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATCGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATCGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCGC-AGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATCGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAAC-AACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTCAGAGGCCAAGACAAGGGAGA-ACACAAGAAGGAAGTGTATGGCCACTGGgtgtaatcccaccgagtgagtgggtgcagggacagagcttagctttcttctc Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAAC-AACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTCAGAGGCCAAGACAAGGG-AGAACACAAGAAGGAAgtgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcaactacact Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAAC-AACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGA gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACcAACAGCATCTCAGAGGCCAAGACAAGGGAGAACACAAGAAGGAAgtgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagctttcttctc Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAA-CAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTCAGAGGCCAAGACAAGGGAG-AACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagctttcttctc Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAA-CAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTCAGAGGCCAAGACAAGGGAG-AACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagctttcttctc Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTCAGAGGCCAAGACAAGGGAGAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagctttcttctc Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAAC-AACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTCAGAGGCCAAGACAAGGGAG-AACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagctttcttctc Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTCAGAGGCCAAGACAAGGGAGAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagctttcttctc #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctcacacatcagccccatattacctgcccaccttccccgccgccctcagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGC-AAGGGAGTTGAATGAAaggtaagaacagatagaaggtctgggggactctggtgactatcatccaacgt Alignment from CESAR GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctcacacatcagccccatattacctgcccaccttccccgccgccctcagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGG-CAAGGGAGTTGAATGAAaggtaagaacagatagaaggtctgggggactctggtgactatcatccaacgt Alignment from Spaln_aa2Genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctcacacatcagccccatattacctgcccaccttccccgccgccctcagGCTCATCAGTGGGTCAAGGAAGTTcGTCCTGGATACACACACAACCCAGTTCAAGAGGCA-AGGGAGTTGAATGAAAGgtaagaacagatagaaggtctgggggactctggtgactatcatccaacgt Alignment from Spaln_nt2Genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctcacacatcagccccatattacctgcccaccttccccgccgccctcagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGC-AAGGGAGTTGAATGAAAGgtaagaacagatagaaggtctgggggactctggtgactatcatccaacgt Alignment from Pairagon GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctcacacatcagccccatattacctgcccaccttccccgccgccctcagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGC-AAGGGAGTTGAATGAAAGgtaagaacagatagaaggtctgggggactctggtgactatcatccaacgt Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctcacacatcagccccatattacctgcccaccttccccgccgccctcagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCAAGGGAGTTGAATGAAAGgtaagaacagatagaaggtctgggggactctggtgactatcatccaacgt Alignment from Exonerate_coding2genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctcacacatcagccccatattacctgcccaccttccccgccgccctcagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCAA-GGGAGTTGAATGAAAGgtaagaacagatagaaggtctgggggactctggtgactatcatccaacgt Alignment from GeneWise GCTCATCAGCGGCTCAAGGAGGTTGTC------ gctcacacatcagccccatattacctgcccaccttccccgccgccctcaggctcatcagtgggtcaaggaagttcgtcctggatacacacacaacccagttcaagaggcaagggagttgaatgaaaggtaagaacagatagaagGTCTGGGGGACTCTGGTGACTATCATCCAACGT #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAACGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCT-TGCTATCCACTCAggtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAACGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTC-TTGCTATCCACTCAggtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTC---TCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAAcGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTTGCTATCCACTCAGGTAAgtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAACGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCT-TGCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAACGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCT-TGCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCA ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAACGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTTGCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGG---TGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAA--CGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTT-GCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAG-GAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGGA- ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAACGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTTGCTATCCACTCAGGTAAgtccgggggctccggcactagagcagcttggaagtttcagcagaga #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAG-GTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGCGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAG-TGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAG-GTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGCGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAG-TGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAG-GTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGcGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGT-GATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAG-GTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGCGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAG-TGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAG-GTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGCGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAG-TGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAG-GTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCA--GTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGCGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGT---GATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAG-GTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCA--GTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGCGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGT---GATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGCGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagaaAGGAACAAGTGCTTTAGGATGTCACTCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTC-TATGGAGTTTGTGgagtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from CESAR aaAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagaaAGGAACAAGTGCTTTAGGATGTCACTCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGA-GTCTATGGAGTTTGTGgagtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGTCAcTCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAG-TCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGT-CTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGT-CTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCTATGGAGTTTGTGGAGtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCTATGGAGTTTGTGGAGtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from GeneWise --------------------------------------------------AAAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA CAGGGAGCTGGGTCTGCCAGGCCATGGCAGGCTTGCTCTATGTCTTGCAGAAAGGAACAAGTGCTTTAGGATGTCACTCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGT------CTATGGAGTTTgtggagtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagaGCAAAGCAGCAC---AAGATGGCTGAACTACTGCCGCTCTATCTTTGGGGATGCACTACTCATTG-CCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagaGCAAAGCAGCAC---AAGATGGCTGAACTACTGCCGCTCTATCTTTGGGGATGCACTACTCATT-GCCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCAC---AAGATGGCTGAAcTACTGCCGCTCTATCTTTGGGGATGCACTACTCATTGC-CCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCA---CAAGATGGCTGAACTACTGCCGCTCTATCTTTGGGGATGCACTACTCATTG-CCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCA---CAAGATGGCTGAACTACTGCCGCTCTATCTTTGGGGATGCACTACTCATTG-CCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Exonerate_protein2genome CAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCC ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCACAAGATGGCTGAACTACTGCCGCTCTATCTTTGGGGATGCACTACTCATTGCCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCACAAGATGGCTGAA--CTACTGCCGCTCTATCTTTGGGGATGCACTACTCAT-TGCCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from GeneWise ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagagcaaagcagcacaagatggctgaactactgccgctctatctttggggatgcactactcattgccctcttgacaaatacccagtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCG-GACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagcATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGGTGGAGACTGCGCTGG-GTCCTGTGGCCTCAACTTAAACCGAgtgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from CESAR cATTCTGAAGATGTTCTCGGCG-GACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagcATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGGTGGAGACTGCGCTG-GGTCCTGTGGCCTCAACTTAAACCGAgtgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGGTGGAGACTGCGCTGGGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCG-GACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGGTGGAGACTGCGCTGG-GTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Pairagon CATTCTGAAGATGTTCTCGGCG-GACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGGTGGAGACTGCGCTGG-GTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGGTGGAGACTGCGCTGGGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Exonerate_coding2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGGTGGAGACTGCGCTGGGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGGTGGAGACTGCGCTGGGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAA-CTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACCTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGA-CACCTTCCTGCGGAAAgcgtatatctgcggctacctagggagtgctgggagttccactgacaagaccg Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAA-CTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACCTAGCCATGAACATATTGGCCCAGAATGCCTCCC-AGACACCTTCCTGCGGAAAgcgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAA-CTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAAcCTAGCCATGAACATATTGGCCCAGAATGCCTCCCA-GACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccg Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAAC-TGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACCTAGCCATGAACATATTGGCCCAGAATGCCTCCCAG-ACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccg Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAA-CTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACCTAGCCATGAACATATTGGCCCAGAATGCCTCCCAG-ACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccg Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACCTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccg Alignment from Exonerate_coding2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACCTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccg Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACCTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccg #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAG-AAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcttcttcgttctattcgacttctctgtcttcctaacagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGGGGCCCTGATACGCGGCTGGAGGAGCAGACTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCA-ATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaacttggtgtcaagtgacaaccaaggaaggaggggttgggttgtaaga Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAG-AAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcttcttcgttctattcgacttctctgtcttcctaacagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGGGGCCCTGATACGCGGCTGGAGGAGCAGACTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACC-AATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaacttggtgtcaagtgacaaccaaggaaggaggggttgggttgtaaga Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcttcttcgttctattcgacttctctgtcttcctaacagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGGGGCCCTGATACGCGGCTGGAGGAGCAGACTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCAATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaacttggtgtcaagtgacaaccaaggaaggaggggttgggttgtaaga Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAA-ACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcttcttcgttctattcgacttctctgtcttcctaacagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGGGGCCCTGATACGCGGCTGGAGGAGCAGACTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCA-ATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaacttggtgtcaagtgacaaccaaggaaggaggggttgggttgtaaga Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAG-AAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcttcttcgttctattcgacttctctgtcttcctaacagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGGGGCCCTGATACGCGGCTGGAGGAGCAGACTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCA-ATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaacttggtgtcaagtgacaaccaaggaaggaggggttgggttgtaaga Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAG-AAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACA--TTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcttcttcgttctattcgacttctctgtcttcctaacagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGGGGCCCTGATACGCGGCTGGAGGAGCAGACTGATGACAGTGGTGGCTGGGCCAGATTTAGTA---ACTACCAATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaacttggtgtcaagtgacaaccaaggaaggaggggttgggttgtaaga Alignment from Exonerate_coding2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAG-AAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACA--TTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcttcttcgttctattcgacttctctgtcttcctaacagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGGGGCCCTGATACGCGGCTGGAGGAGCAGACTGATGACAGTGGTGGCTGGGCCAGATTTAGTA---ACTACCAATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaacttggtgtcaagtgacaaccaaggaaggaggggttgggttgtaaga Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcttcttcgttctattcgacttctctgtcttcctaacagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGGGGCCCTGATACGCGGCTGGAGGAGCAGACTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCAATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaacttggtgtcaagtgacaaccaaggaaggaggggttgggttgtaaga #### Plekhs1_ID12098_3 --> 0 - 2 Original Alignment ACCTCCTGGAAAAAG-CGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg ccttgcccttctgggccttaactgaaatcttttggggtctccttccctagACCTCCTGGAAAAAGCCGTCTTTTTATACTGTCCCAGAGTCGGGGAT-GGGTCTCAGTCTTTCTTATTACAAAGACCATCAGCACAGAGGTTCCATTGAAATTGACgggtaagggtcttggccggaatgtatcagcaactgagccatcaatgaatgaa Alignment from CESAR ACCTCCTGGAAAAAG-CGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg ccttgcccttctgggccttaactgaaatcttttggggtctccttccctagACCTCCTGGAAAAAGCCGTCTTTTTATACTGTCCCAGAGTCGGG-GATGGGTCTCAGTCTTTCTTATTACAAAGACCATCAGCACAGAGGTTCCATTGAAATTGACgggtaagggtcttggccggaatgtatcagcaactgagccatcaatgaatgaa Alignment from Spaln_aa2Genome ACCTCCTGGAAAAAG-CGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgcccttctgggccttaactgaaatcttttggggtctccttccctagACCTCCTGGAAAAAGcCGTCTTTTTATACTGTCCCAGAGTCGGGGATG-GGTCTCAGTCTTTCTTATTACAAAGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtaagggtcttggccggaatgtatcagcaactgagccatcaatgaatgaa Alignment from Spaln_nt2Genome ACCTCCTGGAAAAAGC-GTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgcccttctgggccttaactgaaatcttttggggtctccttccctagACCTCCTGGAAAAAGCCGTCTTTTTATACTGTCCCAGAGTC-GGGGATGGGTCTCAGTCTTTCTTATTACAAAGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtaagggtcttggccggaatgtatcagcaactgagccatcaatgaatgaa Alignment from Pairagon ACCTCCTGGAAAAAGC-GTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgcccttctgggccttaactgaaatcttttggggtctccttccctagACCTCCTGGAAAAAGCCGTCTTTTTATACTGTCCCAGAGTCGGGG-ATGGGTCTCAGTCTTTCTTATTACAAAGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtaagggtcttggccggaatgtatcagcaactgagccatcaatgaatgaa Alignment from Exonerate_protein2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgcccttctgggccttaactgaaatcttttggggtctccttccctagACCTCCTGGAAAAAGCCGTCTTTTTATACTGTCCCAGAGTCGGGGATGGGTCTCAGTCTTTCTTATTACAAAGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtaagggtcttggccggaatgtatcagcaactgagccatcaatgaatgaa Alignment from Exonerate_coding2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgcccttctgggccttaactgaaatcttttggggtctccttccctagACCTCCTGGAAAAAGCCGTCTTTTTATACTGTCCCAGAGTCGGGGATGGGTCTCAGTCTTTCTTATTACAAAGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtaagggtcttggccggaatgtatcagcaactgagccatcaatgaatgaa Alignment from GeneWise ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgcccttctgggccttaactgaaatcttttggggtctccttccctagACCTCCTGGAAAAAGCCGTCTTTTTATACTGTCCCAGAGTCGGGGATGGGTCTCAGTCTTTCTTATTACAAAGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtaagggtcttggccggaatgtatcagcaactgagccatcaatgaatgaa #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa cccagaagcttttccctcccagataacactttctgaaaatttatttttaggtTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAA-TGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa cccagaagcttttccctcccagataacactttctgaaaatttatttttaggtTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCACTGGGCATATCCTAGTTTCATTGTTTG-GAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGA-AGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGG-AATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGG-AATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTT------GGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAA------GGTCACTGGGCATATCCTAGTTTCATTGTTTGGAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGGCTGCAGCGC-TGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag atgccactatgacccccctgcctatctcacctttccctctactctcttaggtATCACAAGACTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCC-AGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from CESAR gtATCACAAGGCTGCAGCGC-TGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag atgccactatgacccccctgcctatctcacctttccctctactctcttaggtATCACAAGACTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCC-CAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCG-CTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAG-CCCCCCCAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Pairagon GTATCACAAGGCTGCAGCG-CTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCC-AGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from GeneWise --ATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtaagtatagacccagacagcttcgggggacccagggacgtctccgggag #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCT-GGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTCGGTACTCAGCGGGATTTACCCAGAACCACCC-CTCTCTTTCCCCTCCCCATACCAGAGCAGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCT-GGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTCGGTACTCAGCGGGATTTACCCAGAACCACC-CCTCTCTTTCCCCTCCCCATACCAGAGCAGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTCGGTACTCAGCGGGATTTACCCAGAACCACCCCTCTCTTTCCCCTCCCCATACCAGAGCAGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCT-GGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTCGGTACTCAGCGGGATTTACCCAGAACCACCC-CTCTCTTTCCCCTCCCCATACCAGAGCAGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCT-GGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTCGGTACTCAGCGGGATTTACCCAGAACCACCC-CTCTCTTTCCCCTCCCCATACCAGAGCAGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTCGGTACTCAGCGGGATTTACCCAGAACCACCCCTCTCTTTCCCCTCCCCATACCAGAGCAGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTCGGTACTCAGCGGGATTTACCCAGAACCACCCCTCTCTTTCCCCTCCCCATACCAGAGCAGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTCGGTACTCAGCGGGATTTACCCAGAACCACCCCTCTCTTTCCCCTCCCCATACCAGAGCAGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAG-ATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg acctgtccagtctgtgaggtcagtgcccctcacctgccctttccttccagtgCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGTCTCAAATCCCGGGAGCATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTG-GGCACCGCTCAAGATCTGTggtaagtcttgcatagaaccctcttcccagaacctggatgcccctgctagt Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAG-ATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg acctgtccagtctgtgaggtcagtgcccctcacctgccctttccttccagtgCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGTCTCAAATCCCGGGAGCATTTTCCTAAGCCAGCCTATTCTTCTGGAACTT-GGGCACCGCTCAAGATCTGTggtaagtcttgcatagaaccctcttcccagaacctggatgcccctgctagt Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG acctgtccagtctgtgaggtcagtgcccctcacctgccctttccttccagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGTCTCAAATCCCGGGAGCATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGGGCACCGCTCAAGATCTGTGgtaagtcttgcatagaaccctcttcccagaacctggatgcccctgctagt Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAG-ATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG acctgtccagtctgtgaggtcagtgcccctcacctgccctttccttccagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGTCTCAAATCCCGGGAGCATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTG-GGCACCGCTCAAGATCTGTGgtaagtcttgcatagaaccctcttcccagaacctggatgcccctgctagt Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAG-ATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG acctgtccagtctgtgaggtcagtgcccctcacctgccctttccttccagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGTCTCAAATCCCGGGAGCATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTG-GGCACCGCTCAAGATCTGTGgtaagtcttgcatagaaccctcttcccagaacctggatgcccctgctagt Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG acctgtccagtctgtgaggtcagtgcccctcacctgccctttccttccagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGTCTCAAATCCCGGGAGCATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGGGCACCGCTCAAGATCTGTGgtaagtcttgcatagaaccctcttcccagaacctggatgcccctgctagt Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG acctgtccagtctgtgaggtcagtgcccctcacctgccctttccttccagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGTCTCAAATCCCGGGAGCATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGGGCACCGCTCAAGATCTGTGgtaagtcttgcatagaaccctcttcccagaacctggatgcccctgctagt Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG acctgtccagtctgtgaggtcagtgcccctcacctgccctttccttccagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGTCTCAAATCCCGGGAGCATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGGGCACCGCTCAAGATCTGTGgtaagtcttgcatagaaccctcttcccagaacctggatgcccctgctagt #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAG-TATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaaggcGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGCTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGG-GGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGtgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAG-TATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaaggcGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGCTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCC-TGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGtgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGCTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAG-TATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGCTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCT-GGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAG-TATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGCTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCT-GGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAG-TATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTC--TTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGCTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCT---GGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAG-TATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTC--TTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGCTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCT---GGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGCTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCC-CCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttacctcatgaactatgagtttctatttgcagGTGCCTACCTCAGCCCCCGCAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCC-CCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaatcttgctacactcatcctagtcccaacctgttctcctgagtcctg Alignment from CESAR GTGCCTACTCCAGCCCCA-CAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttacctcatgaactatgagtttctatttgcagGTGCCTACCTCAGCCCCCGCAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCC-GGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaatcttgctacactcatcctagtcccaacctgttctcctgagtcctg Alignment from Spaln_aa2Genome CTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttacctcatgaactatgagtttctatttgcaggtgcctacCTCAGCCCCCGCAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCGG-CGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaatcttgctacactcatcctagtcccaacctgttctcctgagtcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCA-CAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttacctcatgaactatgagtttctatttgcagGTGCCTACCTCAGCCCCCGCAGTCTGCCAGCATGAGCCACAGATCCTACCGGCC-CCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaatcttgctacactcatcctagtcccaacctgttctcctgagtcctg Alignment from Pairagon GTGCCTACTCCAG-CCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttacctcatgaactatgagtttctatttgcagGTGCCTACCTCAGCCCCCGCAGTCTGCCAGCATGAGCCACAGATCCTACCGGCC-CCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaatcttgctacactcatcctagtcccaacctgttctcctgagtcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttacctcatgaactatgagtttctatttgcagGTGCCTACCTCAGCCCCCGCAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaatcttgctacactcatcctagtcccaacctgttctcctgagtcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttacctcatgaactatgagtttctatttgcagGTGCCTACCTCAGCCCCCGCAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaatcttgctacactcatcctagtcccaacctgttctcctgagtcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttacctcatgaactatgagtttctatttgcagGTGCCTACCTCAGCCCCCGCAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaatcttgctacactcatcctagtcccaacctgttctcctgagtcctg #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCC-AAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCCAAGGGAGCGCAGGTAGTGGCCTGTCTGA-TGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCC-AAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCCAAGGGAGCGCAGGTAGTGGCCTGTCTG-ATGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCCAAGGGAGCGCAGGTAGTGGCCTGTCTGATGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAG-GCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCCAAGGGAGCGCAGGTAGTGGCCTGTCTGA-TGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGG-CCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCCAAGGGAGCGCAGGTAGTGGCCTGTCTGA-TGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCCAAGGGAGCGCAGGTAGTGGCCTGTCTGATGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCCAAGGGAGCGCAGGTAGTGGCCTGTCTGATGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCCAAGGGAGCGCAGGTAGTGGCCTGTCTGATGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagttGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGCATCCCAGCCATTCTGAAAGCCT-GCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagttGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGCATCCCAGCCATTCTGAAAG-CCTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTcCCCTCTGCCACCAGCATCCCAGCCATTCTGAAAGC-CTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGCATCCCAGCCATTCTGAAAGCC-TGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGCATCCCAGCCATTCTGAAAGCC-TGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGCATCCCAGCCATTCTGAAAGCCTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGCATCCCAGCCATTCTGAAAGCCTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGCATCCCAGCCATTCTGAAAGCCTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGAT-GCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATCGCTGCCTGCCGAGTCATTGCTCGGCTCA-CAAAGAGGTCACTGCTGCTCGAGAAggttagtcatattgcatcgtaatgtccctttctcttctctttctgcaaccc Alignment from CESAR GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGAT-GCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATCGCTGCCTGCCGAGTCATTGCTCGGCTCA-CAAAGAGGTCACTGCTGCTCGAGAAggttagtcatattgcatcgtaatgtccctttcaattttccttttaaccgtt Alignment from Spaln_aa2Genome GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATCGCTGCCTGCCGAGTCATTGCTCGGCTCACAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctcttctctttctgcaaccc Alignment from Spaln_nt2Genome GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGAT-GCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATCGCTGCCTGCCGAGTCATTGCTCGGCTCACA-AAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctcttctctttctgcaaccc Alignment from Pairagon GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGAT-GCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATCGCTGCCTGCCGAGTCATTGCTCGGCTCA-CAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctcttctctttctgcaaccc Alignment from Exonerate_protein2genome GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATCGCTGCCTGCCGAGTCATTGCTCGGCTCACAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctcttctctttctgcaaccc Alignment from Exonerate_coding2genome GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATCGCTGCCTGCCGAGTCATTGCTCGGCTCACAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctcttctctttctgcaaccc Alignment from GeneWise GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATCGCTGCCTGCCGAGTCATTGCTCGGCTCACAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctcttctctttctgcaaccc #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agccatattgcatcgtaatgtccctttcaattttccttttaaccgttcagccCTGGCCACTCTGAAACCACCAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCAC-GCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from CESAR ctCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatattgcatcgtaatgtccctttcaattttccttttaaccgttcagccCTGGCCACTCTGAAACCACCAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCA-CGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAA agccatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCAcCAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAgctcacgcccagtgtagtggtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agccatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACCAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCAC-GCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Pairagon CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agccatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACCAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCAC-GCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGT agccatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACCAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACA-GGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agccatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACCAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACG-CCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from GeneWise TGGCT---ACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAG AGCCATATTGCATCGTAATGTCCCTTTCAATTTTCCTTTTAACCgttcagccctggccactctgaaaccaccaggctggccttattgtacctcaggctgtgccaagctcacgcccagtgtagtggtaagggttccaccttcagggccccaccagtaactgacacttcacaagag #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGC-ATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTAGTCATTCCTGGGATTCTTGCTCTGGACCTGTGTC-CTCAGACACTAACAAGATTCTCACTggtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from CESAR GGTCTACACAGTGCTAGC-ATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTAGTCATTCCTGGGATTCTTGCTCTGGACCTGTGTC-CTCAGACACTAACAAGATTCTCACTggtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGC-ATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTAGTcATTCCTGGGATTCTTGCTCTGGACCTGTGTCCTCA-GACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAG-CATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTAGTCATTCCTGGGATTCTTGCTCTGGACCTGTGT-CCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Pairagon GGTCTACACAGTGCTAG-CATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTAGTCATTCCTGGGATTCTTGCTCTGGACCTGTGT-CCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTAGTCATTCCTGGGATTCTTGCTCTGGACCTGTGTCCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAG-CATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTAGTCATTCCTGGGATTCTTGCTCTGGACCTGTGTCC-TCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTAGTCATTCCTGGGATTCTTGCTCTGGACCTGTGTCCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagctCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGA-CAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagctCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAG-ACAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTcGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAC-AAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCA-CCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGA-CAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGA-CAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAG--ATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAC---AAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGA---TGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCT--CGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAC-AAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGAC-AAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg #### Pygm_ID1679_3 --> 0 - 1 Original Alignment CTGGGCTTGGACATG-GAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGCGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATG-GGGCCTGGGACGCCTTGCAggtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from CESAR CTGGGCTTGGACATG-GAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGCGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATG-GGGCCTGGGACGCCTTGCAggtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Spaln_aa2Genome CTGGGCTTGGACATG-GAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTG---GCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGcGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGCCTGGGACGCCTTGCAGGTGAgtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Spaln_nt2Genome CTGGGCTTGGACATG-GAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGCGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAAT-GGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Pairagon CTGGGCTTGGACATG-GAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGCGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAAT-GGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Exonerate_protein2genome CTGGGCTTGGACATG-GAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCA ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGCGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Exonerate_coding2genome CTGGGCTTGGACATGGA---GGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATG--CGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGG-GGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from GeneWise ---TTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAGCT- ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagctgggcttggacatgcgagGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGCCTGGGACGCCTTGCAGGTGAgtccatagcttgcagaggtggggtatgggagttactcacattgggt #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCC-ATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagctTGCTTTCTGGACTCCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCC-CTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from CESAR ctTGCTTTTTGGACTCC-ATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagctTGCTTTCTGGACTCCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATC-CCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCC-ATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCcATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCC-TATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Spaln_nt2Genome CTTGCTTTTTGGACT-CCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCC-CTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Pairagon CTTGCTTTTTGGACT-CCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCC-CTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCC-ATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATC--CGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCC---TATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Exonerate_coding2genome CTTGCTTTTTGGACTC---CATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGAC--TCCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCC-TATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from GeneWise CTTGCTTTTTGGAC-TCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCC-TATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgtagttaattgttggggctgaccatgttcttctctccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACA-CATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgaggttctggcctgaagtgtcttcctctccctagagtcccatggcctt Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgtagttaattgttggggctgaccatgttcttctctccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGAC-ACATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgaggttctggcctgaagtgtcttcctctccctagagtcccatggcctt Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgtagttaattgttggggctgaccatgttcttctctccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACACATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgaggttctggcctgaagtgtcttcctctccctagagtcccatggcctt Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgtagttaattgttggggctgaccatgttcttctctccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACA-CATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgaggttctggcctgaagtgtcttcctctccctagagtcccatggcctt Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgtagttaattgttggggctgaccatgttcttctctccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACA-CATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgaggttctggcctgaagtgtcttcctctccctagagtcccatggcctt Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGAC--ATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgtagttaattgttggggctgaccatgttcttctctccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACAC---ATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgaggttctggcctgaagtgtcttcctctccctagagtcccatggcctt Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCA---GGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgtagttaattgttggggctgaccatgttcttctctccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAG--CCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACAC-ATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgaggttctggcctgaagtgtcttcctctccctagagtcccatggcctt Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgtagttaattgttggggctgaccatgttcttctctccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACACATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgaggttctggcctgaagtgtcttcctctccctagagtcccatggcctt #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAATGACACCCAC-CCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctttgcctagaagtcatctgggggtggttgtattctgcagGTGGTCATCCAACTCAATGACACACATCCCCTCTTTGGCCATCCCGGAGCTGATGAGGATTCCGGTAG-CCTTGAACGACTAGACTGGGACAAGgtaaggattggcaacatcacccctgtaaggacccgatctgtgacagggtg Alignment from CESAR GTGGCCATCCAGCTCAATGACACCCACCCC-TCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctttgcctagaagtcatctgggggtggttgtattctgcagGTGGTCATCCAACTCAATGACACACATCCCCTCTTTGGCCATCCCGGAGCTGATGAGGATTCCGGTA-GCCTTGAACGACTAGACTGGGACAAGgtaaggattggcaacatcacccctgtaaggacccgatctgtgacagggtg Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCAC-CCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctttgcctagaagtcatctgggggtggttgtattctgcagGTGGTCATCCAACTCAATGACACACATcCCCTCTTTGGCCATCCCGGAGCTGATGAGGATTCCGGTAGC-CTTGAACGACTAGACTGGGACAAGgtaaggattggcaacatcacccctgtaaggacccgatctgtgacagggtg Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAATGACACCCA-CCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctttgcctagaagtcatctgggggtggttgtattctgcagGTGGTCATCCAACTCAATGACACACATCCCCTCTTTGGCCATCCCGGAGCTGATGAGGATTCCGGTAG-CCTTGAACGACTAGACTGGGACAAGgtaaggattggcaacatcacccctgtaaggacccgatctgtgacagggtg Alignment from Pairagon GTGGCCATCCAGCTCAATGACACCCA-CCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctttgcctagaagtcatctgggggtggttgtattctgcagGTGGTCATCCAACTCAATGACACACATCCCCTCTTTGGCCATCCCGGAGCTGATGAGGATTCCGGTAG-CCTTGAACGACTAGACTGGGACAAGgtaaggattggcaacatcacccctgtaaggacccgatctgtgacagggtg Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctttgcctagaagtcatctgggggtggttgtattctgcagGTGGTCATCCAACTCAATGACACACATCCCCTCTTTGGCCATCCCGGAGCTGATGAGGATTCCGGTAGCCTTGAACGACTAGACTGGGACAAGgtaaggattggcaacatcacccctgtaaggacccgatctgtgacagggtg Alignment from Exonerate_coding2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctttgcctagaagtcatctgggggtggttgtattctgcagGTGGTCATCCAACTCAATGACACACATCCCCTCTTTGGCCATCCCGGAGCTGATGAGGATTCCGGTAGCCTTGAACGACTAGACTGGGACAAGgtaaggattggcaacatcacccctgtaaggacccgatctgtgacagggtg Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctttgcctagaagtcatctgggggtggttgtattctgcagGTGGTCATCCAACTCAATGACACACATCCCCTCTTTGGCCATCCCGGAGCTGATGAGGATTCCGGTAGCCTTGAACGACTAGACTGGGACAAGgtaaggattggcaacatcacccctgtaaggacccgatctgtgacagggtg #### Pygm_ID1688_12 --> 1 - 0 Original Alignment cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGC-ATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCCATCACCCCTCGGCGCTGGCTCGTACTGTGTA-CCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from CESAR cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGC-ATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCCATCACCCCTCGGCGCTGGCTCGTACTGTGT-ACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Spaln_aa2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCCATCACCCCTCGGCGCTGGCTCGTACTGTGTACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Spaln_nt2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGG-CATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCCATCACCCCTCGGCGCTGGCTCGTACTGTGT-ACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Pairagon CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGG-CATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCCATCACCCCTCGGCGCTGGCTCGTACTGTGT-ACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Exonerate_protein2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCCATCACCCCTCGGCGCTGGCTCGTACTGTGTACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Exonerate_coding2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCCATCACCCCTCGGCGCTGGCTCGTACTGTGTACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from GeneWise CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCCATCACCCCTCGGCGCTGGCTCGTACTGTGTACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc #### Rasgrp2_ID1706_5 --> 1 - 0 Original Alignment cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAG-CCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGT-CCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from CESAR cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAG-CCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAG-TCCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Spaln_aa2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTCCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Spaln_nt2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGC-CTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGT-CCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Pairagon CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAG-CCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGT-CCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Exonerate_protein2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTCCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Exonerate_coding2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTCCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from GeneWise CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTCCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTC-TTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCCTTCAACAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCA-CAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTC-TTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCCTTCAACAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTC-ACAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCCTTCAACAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCACAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCT-CTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCCTTCAACAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCA-CAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCT-CTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCCTTCAACAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCA-CAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTC-TTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTC--AGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCCTTCAACAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAC---AAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTC-TTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTC--AGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCCTTCAACAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAC---AAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCCTTCAACAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCACAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT-GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCTGTAGACGAGAAGGGTCATATGAGCGCCA-CGCCAAGGGACAGGTCCGTCTTCTGaggtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT-GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCTGTAGACGAGAAGGGTCATATGAGCGCCA-CGCCAAGGGACAGGTCCGTCTTCTGaggtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT-GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTcGAGTTTTCTGTAGACGAGAAGGGTCATATGAGCGCCAC-GCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT-GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCTGTAGACGAGAAGGGTCATATGAGCGCCAC-GCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT-GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCTGTAGACGAGAAGGGTCATATGAGCGCCAC-GCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCTGTAGACGAGAAGGGTCATATGAGCGCCACGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Exonerate_coding2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCTGTAGACGAGAAGGGTCATATGAGCGCCACGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTCGAGTTTTCTGTAGACGAGAAGGGTCATATGAGCGCCACGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAG-ATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGCATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTC-GGGAGGTGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from CESAR GGCAGACTCCGGGGTGAG-ATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGCATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCT-CGGGAGGTGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Spaln_aa2Genome GACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagggcagTCTCCGAGGTGAGCATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCG-GGAGGTGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAG-ATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGCATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTC-GGGAGGTGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Pairagon GGCAGACTCCGGGGTGAG-ATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGCATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTC-GGGAGGTGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAG-ATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCT--CTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGCATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCG---GGAGGTGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Exonerate_coding2genome GGCAGACTCCGGGGTGAG-ATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCT--CTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGCATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCG---GGAGGTGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from GeneWise GACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagggcagTCTCCGAGGTGAGCATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCG-GGAGGTGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTG-CCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACA cgagggaccagatgtttctagtaacctacctctcccccaccccactgcagccCCTTGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCCATGCTAGCACCATGTACAGGTCTCAGTCCTGCTGTGT-CACCTGCCCACTCTTTTTTGGAGTTggtgcctctcacctcctaacttggacttccttgcagccCATTTTCACCACA Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCC-ATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACA cgagggaccagatgtttctagtaacctacctctcccccaccccactgcagccCCTTGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCCATGCTAGCACCATGTACAGGTCTCAGTCCTGCTGTG-TCACCTGCCCACTCTTTTTTGGAGTTggtgcctctcaccttgtaaggccgtctttatttcagccCATTTTCACCACA Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA cgagggaccagatgtttctagtaacctacctctcccccaccccactgcagCCCCTTGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCCATGCTAGCACCATGTACAGGTCTCAGTCCTGCTGTGTCACCTGCCCACTCTTTTTTGGAGTTGgtgcctctcacctcctaacttggacttccttgcagCCCATTTTCACCACA Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCC-ATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA cgagggaccagatgtttctagtaacctacctctcccccaccccactgcagCCCCTTGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCCATGCTAGCACCATGTACAGGTCTCAGTCCTGCTGTG-TCACCTGCCCACTCTTTTTTGGAGTTGgtgcctctcacctcctaacttggacttccttgcagCCCATTTTCACCACA Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTG-CCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA cgagggaccagatgtttctagtaacctacctctcccccaccccactgcagCCCCTTGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCCATGCTAGCACCATGTACAGGTCTCAGTCCTGCTGTG-TCACCTGCCCACTCTTTTTTGGAGTTGgtgcctctcacctcctaacttggacttccttgcagCCCATTTTCACCACA Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA cgagggaccagatgtttctagtaacctacctctcccccaccccactgcagCCCCTTGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCCATGCTAGCACCATGTACAGGTCTCAGTCCTGCTGTGTCACCTGCCCACTCTTTTTTGGAGTTGgtgcctctcacctcctaacttggacttccttgcagCCCATTTTCACCACA Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA cgagggaccagatgtttctagtaacctacctctcccccaccccactgcagCCCCTTGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCCATGCTAGCACCATGTACAGGTCTCAGTCCTGCTGTGTCACCTGCCCACTCTTTTTTGGAGTTGgtgcctctcacctcctaacttggacttccttgcagCCCATTTTCACCACA Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA cgagggaccagatgtttctagtaacctacctctcccccaccccactgcagCCCCTTGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCCATGCTAGCACCATGTACAGGTCTCAGTCCTGCTGTGTCACCTGCCCACTCTTTTTTGGAGTTGgtgcctctcacctcctaacttggacttccttgcagCCCATTTTCACCACA #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTG-GGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCACGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTG-CCTAACAGATGGGCTGAAGGTTGTCCTAggtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from CESAR ATCCTTTTCCTG-GGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCACGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGT-GCCTAACAGATGGGCTGAAGGTTGTCCTAggtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Spaln_aa2Genome ATCCTTTTCCTG-GGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAcGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGC-CTAACAGATGGGCTGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Spaln_nt2Genome ATCCTTTTCCTG-GGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCACGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTG-CCTAACAGATGGGCTGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Pairagon ATCCTTTTCCTG-GGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCACGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTG-CCTAACAGATGGGCTGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Exonerate_protein2genome ATCCTTTTC-CTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCT--TGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCACGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGC---CTAACAGATGGGCTGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Exonerate_coding2genome ATCCTTTTC-CTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCT--TGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCACGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGC---CTAACAGATGGGCTGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from GeneWise taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagatccttttcccacggtccactgatgcagctctctatggattgcccttgtgcctaacagatgggctgaaggttgtcctaggtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTGCTTACC-TTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggaggaaacataactgagttgttgtttttctttccacagCCTGGAACATCACTGCTCACCCTTGATGGGCTTCAGACTGGAGGGCATATTCCCAG-GGCACTGCTGCCCCTGCTGCTAACTATGgtgagtcatgctttatcttttcccaactctgttgtaactagtgtaatgac Alignment from CESAR CCAGGCACATCACTGCTTACC-TTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggaggaaacataactgagttgttgtttttctttccacagCCTGGAACATCACTGCTCACCCTTGATGGGCTTCAGACTGGAGGGCATATTCCCA-GGGCACTGCTGCCCCTGCTGCTAACTATGgtgagtcatgctttatcttttcccaactctgttgtaactagtgtaatgac Alignment from Spaln_aa2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggaggaaacataactgagttgttgtttttctttccacagCCTGGAACATCACTGCTCACCCTTGATGGGCTTCAGACTGGAGGGCATATTCCCAGGGCACTGCTGCCCCTGCTGCTAACTATGgtgagtcatgctttatcttttcccaactctgttgtaactagtgtaatgac Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTTACC-TTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggaggaaacataactgagttgttgtttttctttccacagCCTGGAACATCACTGCTCACCCTTGATGGGCTTCAGACTGGAGGGCATATTCCCAG-GGCACTGCTGCCCCTGCTGCTAACTATGgtgagtcatgctttatcttttcccaactctgttgtaactagtgtaatgac Alignment from Pairagon CCAGGCACATCACTGCTTA-CCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggaggaaacataactgagttgttgtttttctttccacagCCTGGAACATCACTGCTCACCCTTGATGGGCTTCAGACTGGAGGGCATATTCCCAG-GGCACTGCTGCCCCTGCTGCTAACTATGgtgagtcatgctttatcttttcccaactctgttgtaactagtgtaatgac Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggaggaaacataactgagttgttgtttttctttccacagCCTGGAACATCACTGCTCACCCTTGATGGGCTTCAGACTGGAGGGCATATTCCCAGGGCACTGCTGCCCCTGCTGCTAACTATGgtgagtcatgctttatcttttcccaactctgttgtaactagtgtaatgac Alignment from Exonerate_coding2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggaggaaacataactgagttgttgtttttctttccacagCCTGGAACATCACTGCTCACCCTTGATGGGCTTCAGACTGGAGGGCATATTCCCAGGGCACTGCTGCCCCTGCTGCTAACTATGgtgagtcatgctttatcttttcccaactctgttgtaactagtgtaatgac Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggaggaaacataactgagttgttgtttttctttccacagCCTGGAACATCACTGCTCACCCTTGATGGGCTTCAGACTGGAGGGCATATTCCCAGGGCACTGCTGCCCCTGCTGCTAACTATGgtgagtcatgctttatcttttcccaactctgttgtaactagtgtaatgac #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAG-GTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAGTATTACTACT-TTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from CESAR CTCCCTGACAAG-GTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAGTATTACTAC-TTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Spaln_aa2Genome CTCCCTGACAAG-GTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGcATCATTCCCAGCCTGGTGAAGTATTACTACTT-TGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Spaln_nt2Genome CTCCCTGACAAGG-TGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAGTATTACTACT-TTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Pairagon CTCCCTGACAAG-GTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAGTATTACTACT-TTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAGTATTACTACTTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAGTATTACTACTTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAGTATTACTACTTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAG-GGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagtGATGAACTAGAAGAGCGGACGGGGAGCTGTGAGCGAGGGGGAGCCGG-TACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from CESAR tGATGAACTAGAAGAG-GGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagtGATGAACTAGAAGAGCGGACGGGGAGCTGTGAGCGAGGGGGAGCCG-GTACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAG-GGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGcGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGT-ACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGG-GACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGCGGACGGGGAGCTGTGAGCGA-GGGGGAGCCGGTACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Pairagon TGATGAACTAGAAGAG-GGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGCGGACGGGGAGCTGTGAGCGAGGGGGAGCCGG-TACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGCGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGTACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGCGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGTACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGCGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGTACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCC-CCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAG-GGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCC-CCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAG-GGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGAT-GGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGA-GGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGG-CCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGA-GGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACA-GTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACACGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCC-TCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACA-GTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACACGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACC-GCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACACGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACA-GTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACACGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACC-GCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACA-GTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACACGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACC-GCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACA-GTTCGAATCTCCCTGGTCACCAAGGATCCACCTCAC--CGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACACGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCG---CCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Exonerate_coding2genome ATCAATGGCTACACAGGACCAGGAACAGT-TCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACACGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCG-CCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACA-GTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACACGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCG-CCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac #### Rela_ID1128_5 --> 1 - 1 Original Alignment cTTCCAGAACCTGGGGATCCAG-TGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagcTTCCAGAACCTGGGAATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCCA-TAGCCAGCGAATTCAGACCAACAATAACCCATTTCATggtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from CESAR cTTCCAGAACCTGGGGATCCAG-TGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagcTTCCAGAACCTGGGAATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCCA-TAGCCAGCGAATTCAGACCAACAATAACCCATTTCATggtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Spaln_aa2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Spaln_nt2Genome CTTCCAGAACCTGGGGATCCAG-TGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCCAT-AGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Pairagon CTTCCAGAACCTGGGGATCCAG-TGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCCA-TAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Exonerate_protein2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Exonerate_coding2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from GeneWise CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGC-CGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg ggtgggtgccagagctcctacagggtacaatgtctcttctggttgttcagggGCCCCCAACACTGCTGAGCTTAAAATCTGCCCGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTG-GGATGAGATCTTCCTACTGTGTGACAGGGTACAGAAGggtgaggagtgaactctgcatggagaggggaggggtaaatctgggtggagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGC-CGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg ggtgggtgccagagctcctacagggtacaatgtctcttctggttgttcagggGCCCCCAACACTGCTGAGCTTAAAATCTGCCCGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTG-GGATGAGATCTTCCTACTGTGTGACAGGGTACAGAAGggtgaggagtgaactctgcatggagaggggaggggtaaatctgggtggagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggtgggtgccagagctcctacagggtacaatgtctcttctggttgttcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCCCGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGATGAGATCTTCCTACTGTGTGACAGGGTACAGAAGGgtgaggagtgaactctgcatggagaggggaggggtaaatctgggtggagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCC-GAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggtgggtgccagagctcctacagggtacaatgtctcttctggttgttcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCCCGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGG-ATGAGATCTTCCTACTGTGTGACAGGGTACAGAAGGgtgaggagtgaactctgcatggagaggggaggggtaaatctgggtggagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTG-CCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggtgggtgccagagctcctacagggtacaatgtctcttctggttgttcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCCCGAGTAAACCGGAACTCTGGGAGCTGTCTTGGT-GGGATGAGATCTTCCTACTGTGTGACAGGGTACAGAAGGgtgaggagtgaactctgcatggagaggggaggggtaaatctgggtggagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGC-CGAGTAAACCGGAACTCTGGGAGCTGCCTCGGT--GGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggtgggtgccagagctcctacagggtacaatgtctcttctggttgttcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCCCGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGG---GATGAGATCTTCCTACTGTGTGACAGGGTACAGAAGGgtgaggagtgaactctgcatggagaggggaggggtaaatctgggtggagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGC-CGAGTAAACCGGAACTCTGGGAGCTGCCTCGGT--GGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggtgggtgccagagctcctacagggtacaatgtctcttctggttgttcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCCCGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGG---GATGAGATCTTCCTACTGTGTGACAGGGTACAGAAGGgtgaggagtgaactctgcatggagaggggaggggtaaatctgggtggagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG ggtgggtgccagagctcctacagggtacaatgtctcttctggttgttcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCCCGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGATGAGATCTTCCTACTGTGTGACAGGGTACAGAAGGgtgaggagtgaactctgcatggagaggggaggggtaaatctgggtggagg #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAG-CGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcaggCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCCGGCTGCTGATCACCCGGCCTGTGTGGT-ACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAG-CGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcaggCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCCGGCTGCTGATCACCCGGCCTGTGTGG-TACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCCGGCTGCTGATCACCCGGCCTGTGTGGTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGC-GGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCCGGCTGCTGATCACCCGGCCTGTGTGGT-ACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAG-CGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCCGGCTGCTGATCACCCGGCCTGTGTGG-TACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCCGGCTGCTGATCACCCGGCCTGTGTGGTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Exonerate_coding2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCCGGCTGCTGATCACCCGGCCTGTGTGGTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCCGGCTGCTGATCACCCGGCCTGTGTGGTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcaggtGTCTCTTTGGAGGTCTCACGAGCTCATGTTCCAGGACCTCGTACAGCTCATC------TATTGTCGTACCaggtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from CESAR gtGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcaggtGTCTCTTTGGAGGTCTCACGAGCTCATGTTCCAGGACCTCGTACAGCTCATC------TATTGTCGTACCaggtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCAcGAGCTCATGTTCCAGGACCTCGTACAGCTCATC------TATTGTCGTACCAGgtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCACGAGCTCATGTTCCAGGACCTCGTACAGCTCATC------TATTGTCGTACCAGgtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Pairagon GTGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCACGAGCTCATGTTCCAGGACCTCGTACAGCTCATC------TATTGTCGTACCAGgtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCACGAGCTCATGTTCCAGGACCTCGTACAGCTCATC------TATTGTCGTACCAGgtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Exonerate_coding2genome GTGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCACGAGCTCATGTTCCAGGACCTCGTACAGCTCATC------TATTGTCGTACCAGgtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from GeneWise CTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcaggtgtctctttggagGTCT---------CACGAGCTCATGTTCCAGGACCTCGTACAGCTCATC------TATTGTCGTACCAGgtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGC-GAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagggCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGTAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGG-GACAGAG------------------------------------------------------------GATGAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGC-GAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagggCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGTAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATG-GGACAGAG------------------------------------------------------------GATGAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGC-GAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTcGAGGAGGTAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGG-ACAGAG------------------------------------------------------------GATGAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGC-GGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGTAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATG-----------------------------------------------------------GGAC--AGAGGATGAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGG-CGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGTAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGG-------------------------------------------------------------GACAGAGGATGAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Exonerate_protein2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGC-GAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATG tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGTAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGggacagaggatgaggcccaggagccattggagcgagactttgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGC-GAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATG--GTGACGGAGGAGAAGGGAGAGGGGTTG------------------ATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGA tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGTAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGGACAGAGGATGAGGCCCAGGAGCCATTGGAGCGAGACTTTGTGCGGATGGGGAGATGGTATGTTTTGGGTGAGGGCAGTGACTGCTGTAC #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGC-TTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtgactgctgtaccaatactactttacccattttatagGACCGCCTTATCGGGGCCACCGGAAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACAGTCC-AGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCAGCCTAGCAGCAGCAgtaagtatacttaggagccctttttttcctctggcagctggacaatccct Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGC-TTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtgactgctgtaccaatactactttacccattttatagGACCGCCTTATCGGGGCCACCGGAAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACAG-TCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCAGCCTAGCAGCAGCAgtaagtatacttaggagccctttttttcctctggcagctggacaatccct Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtgactgctgtaccaatactactttacccattttatagGACCGCCTTATCGGGGCCACCGGAAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACAGTCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCAGCCTAGCAGCAGCAgtaagtatacttaggagccctttttttcctctggcagctggacaatccct Alignment from Spaln_nt2Genome GGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC----------------GACCGCCTTATCGGGGCCACCGGCAGCT-TCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG GGGTGAGG-GCAGTGACTGCTGTACCAATACTACTTTACCCATTTTATAGGACCGCCTTATCGGGGCCACCGGAAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACAGT-CCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCAGCCTAGCAGCAGCAgtaagtatacttaggagccctttttttcctctggcagctggacaatccct Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAG-CTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtgactgctgtaccaatactactttacccattttatagGACCGCCTTATCGGGGCCACCGGAAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACAGT-CCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCAGCCTAGCAGCAGCAgtaagtatacttaggagccctttttttcctctggcagctggacaatccct Alignment from Exonerate_protein2genome tgggtgagggcagtgactgctgtaccaatactactttacccattttataggaccgccttatcggggccaccggaagccttcagccatttcacattgtggggtctggaaacagtccaggtccagatgccaaagtgcatagggccctaggatggcccagcctagcagcagcagtaagtatacttaggagccctttttttcctctggcagctggacaatccct Alignment from Exonerate_coding2genome tgggtgagggcagtgactgctgtaccaatactactttacccattttataggaccgccttatcggggccaccggaagccttcagccatttcacattgtggggtctggaaacagtccaggtccagatgccaaagtgcatagggccctaggatggcccagcctagcagcagcagtaagtatacttaggagccctttttttcctctggcagctggacaatccct Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCCCAGGTCCCTGAGGAC tgggtgagggcagtgactgctgtaccaatactactttacccattttatagGACCGCCTTATCGGGGCCACCGGAAGCCTTCAGCCATTTCACATTGTGGGGTCTGGAAACAGTCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCAGCCTAGCAGCAGCAGTAAGTATACTTAGGAGCCCTTTTtttcctctggcagctggacaatccct #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCC-CATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagtCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAA-CCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCC-CATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagtCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCCATCCACTTCTT---CCTCAGCAGCCCAACC-TAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCC---CCATCCACTTCTTCCTCAGCAGCCCAACCTAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCC-ATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCCATCCACTTCT---TCCTCAGCAGCCCAACCT-AACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATG-CCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCCATCCACTTCT---TCCTCAGCAGCCCAACCT-AACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCC---CCATCCACTTCTTCCTCAGCAGCCCAACCTAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCC---CCATCCACTTCTTCCTCAGCAGCCCAACCTAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCC---CCATCCACTTCTTCCTCAGCAGCCCAACCTAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTGTCCTGGATAGCATCAAAGAGCGGCTTCTCATTCCAGCCCAAGCTGCGTT-TCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCaggtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTGTCCTGGATAGCATCAAAGAGCGGCTTCTCATTCCAGCCCAAGCTGCGT-TTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCaggtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTGTCCTGGATAGCATCAAAGAGCGGCTTCTCATTCCAGCCCAAGCTGCGTTTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTGTCCTGGATAGCATCAAAGAGCGGCTTCTCATTCCAGCCCAAGCTGCGTT-TCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTGTCCTGGATAGCATCAAAGAGCGGCTTCTCATTCCAGCCCAAGCTGCGTT-TCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTGTCCTGGATAGCATCAAAGAGCGGCTTCTCATTCCAGCCCAAGCTGCGTTTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTGTCCTGGATAGCATCAAAGAGCGGCTTCTCATTCCAGCCCAAGCTGCGTTTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTGTCCTGGATAGCATCAAAGAGCGGCTTCTCATTCCAGCCCAAGCTGCGTTTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTGCGCACTGGTCAC-AACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcaggGCACCAGAGATTCTATTGCGCACTGGTCACCAATCGGGCAGTGGACTGGTGGAGCCTGG-GGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCAC-AACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcaggGCACCAGAGATTCTATTGCGCACTGGTCACCAATCGGGCAGTGGACTGGTGGAGCC-TGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACCAATCGGGCAGTGGACTGGTGGAGCCTGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCA-CAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACCAATCGGGCAGTGGACTGGTGGAGCCTGGG-GCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Pairagon GGCCCCAGAGATTCTAGTGCGCACTGGTCA-CAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACCAATCGGGCAGTGGACTGGTGGAGCCTGGG-GCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACCAATCGGGCAGTGGACTGGTGGAGCCTGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACCAATCGGGCAGTGGACTGGTGGAGCCTGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACCAATCGGGCAGTGGACTGGTGGAGCCTGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCA-GAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagcTTCTACCTGGCGCGAGATCACACTGGCGCTGGGCCATCTCCATTTCC-TGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from CESAR cTTCTACCTGGCA-GAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagcTTCTACCTGGCGCGAGATCACACTGGCGCTGGGCCATCTCCATTTC-CTGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Spaln_aa2Genome CTTCTACCTGGCA-GAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGcGAGATCACACTGGCGCTGGGCCATCTCCATTT-CCTGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Spaln_nt2Genome CTTCTACCTGGCA-GAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGCGAGATCACACTGGCGCTGGGCCATCTCCATTTCC-TGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Pairagon CTTCTACCTGGCA-GAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGCGAGATCACACTGGCGCTGGGCCATCTCCATTTCC-TGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGCGAGATCACACTGGCGCTGGGCCATCTCCATTTCCTGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGCGAGATCACACTGGCGCTGGGCCATCTCCATTTCCTGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGCGAGATCACACTGGCGCTGGGCCATCTCCATTTCCTGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAA-GAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacaggACAGTGGGACACTATGAACGAAGTAGAGCTGACAGAGAGCAGCGTGAACC-TGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from CESAR gACAGTGGGACACTATGAA-GAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacaggACAGTGGGACACTATGAACGAAGTAGAGCTGACAGAGAGCAGCGTGAACC-TGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAA-GAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAAcGAAGTAGAGCTGACAGAGAGCAGCGTGAACCT-GGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAA-GAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAACGAAGTAGAGCTGACAGAGAGCAGCGTGAACCT-GGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Pairagon GACAGTGGGACACTATGAA-GAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAACGAAGTAGAGCTGACAGAGAGCAGCGTGAACCT-GGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAACGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAACGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAACGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc #### Rrp12_ID8300_23 --> 0 - 1 Original Alignment GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCG-TTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg cacccagcctgtacttcagttccatgccactaattatttgactcttacagGTGATCCTATGCACCAAGGAGGTGTCAGTGAGTGCTAGGAAGAGTGCGCTTTACCTTGCTTGTGAAGATGGGACATGCTTTCC-GCGCTTTGGCTCCAACCAGGAAggtaagcaggtggagaactgccttggcccagagaggacttttttttttttt Alignment from CESAR GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCG-TTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg cacccagcctgtacttcagttccatgccactaattatttgactcttacagGTGATCCTATGCACCAAGGAGGTGTCAGTGAGTGCTAGGAAGAGTGCGCTTTACCTTGCTTGTGAAGATGGGACATGCTTTC-CGCGCTTTGGCTCCAACCAGGAAggtaagcaggtggagaactgccttggcccagagaggacttttttttttttt Alignment from Spaln_aa2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtacttcagttccatgccactaattatttgactcttacagGTGATCCTATGCACCAAGGAGGTGTCAGTGAGTGCTAGGAAGAGTGCGCTTTACCTTGCTTGTGAAGATGGGACATGCTTTCCGCGCTTTGGCTCCAACCAGGAAGgtaagcaggtggagaactgccttggcccagagaggacttttttttttttt Alignment from Spaln_nt2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCG-TTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtacttcagttccatgccactaattatttgactcttacagGTGATCCTATGCACCAAGGAGGTGTCAGTGAGTGCTAGGAAGAGTGCGCTTTACCTTGCTTGTGAAGATGGGACATGCTTTCC-GCGCTTTGGCTCCAACCAGGAAGgtaagcaggtggagaactgccttggcccagagaggacttttttttttttt Alignment from Pairagon GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCG-TTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtacttcagttccatgccactaattatttgactcttacagGTGATCCTATGCACCAAGGAGGTGTCAGTGAGTGCTAGGAAGAGTGCGCTTTACCTTGCTTGTGAAGATGGGACATGCTTTCC-GCGCTTTGGCTCCAACCAGGAAGgtaagcaggtggagaactgccttggcccagagaggacttttttttttttt Alignment from Exonerate_protein2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtacttcagttccatgccactaattatttgactcttacagGTGATCCTATGCACCAAGGAGGTGTCAGTGAGTGCTAGGAAGAGTGCGCTTTACCTTGCTTGTGAAGATGGGACATGCTTTCCGCGCTTTGGCTCCAACCAGGAAGgtaagcaggtggagaactgccttggcccagagaggacttttttttttttt Alignment from Exonerate_coding2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtacttcagttccatgccactaattatttgactcttacagGTGATCCTATGCACCAAGGAGGTGTCAGTGAGTGCTAGGAAGAGTGCGCTTTACCTTGCTTGTGAAGATGGGACATGCTTTCCGCGCTTTGGCTCCAACCAGGAAGgtaagcaggtggagaactgccttggcccagagaggacttttttttttttt Alignment from GeneWise GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtacttcagttccatgccactaattatttgactcttacagGTGATCCTATGCACCAAGGAGGTGTCAGTGAGTGCTAGGAAGAGTGCGCTTTACCTTGCTTGTGAAGATGGGACATGCTTTCCGCGCTTTGGCTCCAACCAGGAAGgtaagcaggtggagaactgccttggcccagagaggacttttttttttttt #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagagGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAG-GACAGCC---CCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagagGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGA----GGACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAcATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGG----ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAG----GACAGCCCCTCGCCGTGCTGTGCTGGAAA---TCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAG----GACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCT--CGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGA------GGACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAAT---CCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCA--CATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGG----ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCA---------GCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTT------------CAACCTGTACGGGCAACCAGTTGCAGCTGGAGGACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt #### Rrp12_ID8306_17 --> 0 - 1 Original Alignment ATCTGGACCCTCCTGCCT-GGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg gcatgcagggctacaaggcattttttaattgccgtgggtttcccttgcagATCTGGACCCTCCAGCCTCGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTT-CAAAGGCCTGGCACGTACTTTGGGTACAGCTATCAATGAGTGCCCAGACCTGAGGGTCAGTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggtgagtggggaaccttttgggaagatgacctgggatgctagcttgctcta Alignment from CESAR ATCTGGACCCTCCTGCCT-GGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg gcatgcagggctacaaggcattttttaattgccgtgggtttcccttgcagATCTGGACCCTCCAGCCTCGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCT-CTTCAAAGGCCTGGCACGTACTTTGGGTACAGCTATCAATGAGTGCCCAGACCTGAGGGTCAGTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggtgagtggggaaccttttgggaagatgacctgggatgctagcttgctcta Alignment from Spaln_aa2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggctacaaggcattttttaattgccgtgggtttcccttgcagATCTGGACCCTCCAGCCTCGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTCAAAGGCCTGGCACGTACTTTGGGTACAGCTATCAATGAGTGCCCAGACCTGAGGGTCAGTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtgagtggggaaccttttgggaagatgacctgggatgctagcttgctcta Alignment from Spaln_nt2Genome ATCTGGACCCTCCTGCCT-GGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggctacaaggcattttttaattgccgtgggtttcccttgcagATCTGGACCCTCCAGCCTCGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCT-CTTCAAAGGCCTGGCACGTACTTTGGGTACAGCTATCAATGAGTGCCCAGACCTGAGGGTCAGTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtgagtggggaaccttttgggaagatgacctgggatgctagcttgctcta Alignment from Pairagon ATCTGGACCCTCCTGCCT-GGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggctacaaggcattttttaattgccgtgggtttcccttgcagATCTGGACCCTCCAGCCTCGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCT-CTTCAAAGGCCTGGCACGTACTTTGGGTACAGCTATCAATGAGTGCCCAGACCTGAGGGTCAGTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtgagtggggaaccttttgggaagatgacctgggatgctagcttgctcta Alignment from Exonerate_protein2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggctacaaggcattttttaattgccgtgggtttcccttgcagATCTGGACCCTCCAGCCTCGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTCAAAGGCCTGGCACGTACTTTGGGTACAGCTATCAATGAGTGCCCAGACCTGAGGGTCAGTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtgagtggggaaccttttgggaagatgacctgggatgctagcttgctcta Alignment from Exonerate_coding2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggctacaaggcattttttaattgccgtgggtttcccttgcagATCTGGACCCTCCAGCCTCGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTCAAAGGCCTGGCACGTACTTTGGGTACAGCTATCAATGAGTGCCCAGACCTGAGGGTCAGTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtgagtggggaaccttttgggaagatgacctgggatgctagcttgctcta Alignment from GeneWise ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG gcatgcagggctacaaggcattttttaattgccgtgggtttcccttgcagATCTGGACCCTCCAGCCTCGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTCAAAGGCCTGGCACGTACTTTGGGTACAGCTATCAATGAGTGCCCAGACCTGAGGGTCAGTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgtgagtggggaaccttttgggaagatgacctgggatgctagcttgctcta #### Rrp12_ID8315_8 --> 2 - 0 Original Alignment gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCC-TGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcaggtTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTG-GACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from CESAR gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCC-TGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcaggtTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGT-GGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Spaln_aa2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Spaln_nt2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTG-CCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTG-GACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Pairagon GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTG-CCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTG-GACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Exonerate_protein2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Exonerate_coding2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from GeneWise GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGAC-ACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATCACACCCCTGGGCACTGTGGCATTGCTCCAGGAGA-GCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATgcgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGAC-ACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATCACACCCCTGGGCACTGTGGCATTGCTCCAGG-AGAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATgcgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATCACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGA-CACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATCACACCCCTGGGCACTGTGGCATTGCTCCAGGAG-AGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGA-CACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATCACACCCCTGGGCACTGTGGCATTGCTCCAGGAG-AGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATCACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATCACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATCACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAG-CCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCCATCGTGAACAGAGGGCTGGCTGCTGCCC-GCTCCTGTGTCAGAACAAAggtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAG-CCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCCATCGTGAACAGAGGGCTGGCTGCTGCC-CGCTCCTGTGTCAGAACAAAggtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCCATCGTGAACAGAGGGCTGGCTGCTGCCCGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAG-CCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCCATCGTGAACAGAGGGCTGGCTGCTGCCC-GCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAG-CCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCCATCGTGAACAGAGGGCTGGCTGCTGCCC-GCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCCATCGTGAACAGAGGGCTGGCTGCTGCCCGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCCATCGTGAACAGAGGGCTGGCTGCTGCCCGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCCATCGTGAACAGAGGGCTGGCTGCTGCCCGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAG-TCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGCTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGG-CCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCGTACACTGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAG-TCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGCTCCCGTCAGCGTGGCTGGGAGGAGGAGGAG-GCCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCGTACACTGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGCTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGCCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCGTACACTGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAG-TCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGCTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGG-CCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCGTACACTGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAG-TCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGCTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGG-CCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCGTACACTGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGCTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGCCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCGTACACTGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGCTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGCCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCGTACACTGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGCTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGCCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCGTACACTGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTT-CCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagagGATGGGGGGGCTCTCCCCGCCAGGGTCACCAGATGGGCTGGAGGAAGATG-GGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from CESAR agGATGGGGGAGCTCTTCCG-CCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagagGATGGGGGGGCTCTCCCCGCCAGGGTCACCAGATGGGCTGGAGGAAGAT-GGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCCGCCAGGGTCACCAGATGGGCTGGAGGAAGATGGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCC-GCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCCGCCAGGGTCACCAGATGGGCTGGAGGAAGATG-GGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Pairagon AGGATGGGGGAGCTCT-TCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCCGCCAGGGTCACCAGATGGGCTGGAGGAAGATG-GGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCCGCCAGGGTCACCAGATGGGCTGGAGGAAGATGGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCCGCCAGGGTCACCAGATGGGCTGGAGGAAGATGGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from GeneWise ----GGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagagGATGGGGGGGCTCTCCCCGCCAGGGTCACCAGATGGGCTGGAGGAAGATGG-GCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTG-GGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTT-GGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGcGATCAAGAGTTTGGTGTGAGCACTTTAGTTGG-GAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTG-GGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTG-GGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAG-GAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagagGCAGGCACCAAGGAGCGAATCTGTTGCAGCCGATGTTATCAACCCCATGG-CTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGgggtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from CESAR agGCGGGCACCAAGGAG-GAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagagGCAGGCACCAAGGAGCGAATCTGTTGCAGCCGATGTTATCAACCCCATGG-CTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGgggtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAG-GAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGcGAATCTGTTGCAGCCGATGTTATCAACCCCATGGC-TTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAG-GAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGCGAATCTGTTGCAGCCGATGTTATCAACCCCATGG-CTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Pairagon AGGCGGGCACCAAGGAG-GAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGCGAATCTGTTGCAGCCGATGTTATCAACCCCATGG-CTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGCGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGCGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGCGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGT-TGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from CESAR AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTG-TTGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTTGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGT-TGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Pairagon AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGT-TGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTTGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Exonerate_coding2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTTGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from GeneWise AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTTGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTC-TCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCCTCCAGTGCAACCTTACCTCCTCCTGGAGCCC-AAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTC-TCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCCTCCAGTGCAACCTTACCTCCTCCTGGAG-CCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGT-CTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCA-AGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGT-CTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCCTCCAGTGCAACCTTACCTCCTCCTGGAG-CCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTA-GTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTCGTGTGTGCCTGTCGGCTGAAGAACTGGAGAGAGG-ACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTggtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTA-GTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTCGTGTGTGCCTGTCGGCTGAAGAACTGGAGAGAG-GACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTggtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTCGTGTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTA-GTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTCGTGTGTGCCTGTCGGCTGAAGAACTGGAGAGAGG-ACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACC-TAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTCGTGTGTGCCTGTCGGCTGAAGAACTGGAGAGAGG-ACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTA-GTATGTGCCTGTAGGCTGAAGAACTGGAGAGAG--GCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTCGTGTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGA---CTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTA-GTATGTGCCTGTAGGCTGAAGAACTGGAGAGAG--GCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTCGTGTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGA---CTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTCGTGTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGC-TCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTCTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACA-GAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGC-TCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTCTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCAC-AGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGC-TCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATG---AGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTcTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACAGAGGCAGGCTGACAAGGCGAgtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTG-CTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTCTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACA-GAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTG-CTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTCTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACA-GAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTCTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACAGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTCTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACAGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGC-TCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGTG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTCTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACAGAGGCAGGCTGACAAGGCGAgtggcaattgcttgagagtgttggagggaggagctttctgcgtgag #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCT-GTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggtttgacctgtttcataagtcacctttgctactgactctttttcagatGCTGAGTTTGTGTTCTCTCGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTG-TGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGTAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGGGCACCCCGAGTATGCAAGgtaagtctgatgcactcagggtatggggaaaaggaaaggccagacctctg Alignment from CESAR atGCTGAGTTTGTGTTCTCT-GTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggtttgacctgtttcataagtcacctttgctactgactctttttcagatGCTGAGTTTGTGTTCTCTCGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGT-GTGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGTAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGGGCACCCCGAGTATGCAAGgtaagtctgatgcactcagggtatggggaaaaggaaaggccagacctctg Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggtttgacctgtttcataagtcacctttgctactgactctttttcagATGCTGAGTTTGTGTTCTCTCGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGTGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGTAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGGGCACCCCGAGTATGCAAGgtaagtctgatgcactcagggtatggggaaaaggaaaggccagacctctg Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCT-GTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggtttgacctgtttcataagtcacctttgctactgactctttttcagATGCTGAGTTTGTGTTCTCTCGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTG-TGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGTAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGGGCACCCCGAGTATGCAAGgtaagtctgatgcactcagggtatggggaaaaggaaaggccagacctctg Alignment from Pairagon ATGCTGAGTTTGTGTTCTCT-GTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggtttgacctgtttcataagtcacctttgctactgactctttttcagATGCTGAGTTTGTGTTCTCTCGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTG-TGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGTAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGGGCACCCCGAGTATGCAAGgtaagtctgatgcactcagggtatggggaaaaggaaaggccagacctctg Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggtttgacctgtttcataagtcacctttgctactgactctttttcagATGCTGAGTTTGTGTTCTCTCGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGTGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGTAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGGGCACCCCGAGTATGCAAGgtaagtctgatgcactcagggtatggggaaaaggaaaggccagacctctg Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggtttgacctgtttcataagtcacctttgctactgactctttttcagATGCTGAGTTTGTGTTCTCTCGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGTGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGTAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGGGCACCCCGAGTATGCAAGgtaagtctgatgcactcagggtatggggaaaaggaaaggccagacctctg Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggtttgacctgtttcataagtcacctttgctactgactctttttcagATGCTGAGTTTGTGTTCTCTCGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGTGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGTAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGGGCACCCCGAGTATGCAAGgtaagtctgatgcactcagggtatggggaaaaggaaaggccagacctctg #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTC-TGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCCTGCAGTCTAAATGCCGACACATCATCCCACACACATT-CTATGCCGTCTTTATGCTGACAACACAGtggtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTC-TGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCCTGCAGTCTAAATGCCGACACATCATCCCACACAC-ATTCTATGCCGTCTTTATGCTGACAACACAGtggtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCCTGCAGTCTAAATGCCGACACATCATCCCACACACATTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGT-CTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCCTGCAGTCTAAATGCCGACACATCATCCCACACACA-TTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGT-CTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCCTGCAGTCTAAATGCCGACACATCATCCCACACACA-TTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTC-TGCAGCCTGAATGCTGATACATCATCCCACACACAT--TTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCCTGCAGTCTAAATGCCGACACATCATCCCACACACATTC---TATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTC-TGCAGCCTGAATGCTGATACATCATCCCACACACAT--TTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCCTGCAGTCTAAATGCCGACACATCATCCCACACACATTC---TATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCCTGCAGTCTAAATGCCGACACATCATCCCACACACATTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACA-GGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACACGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGC-TTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACA-GGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACACGGCCCTTTTATGGAGTACCAAGATGGTGCCCGG-CTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACACGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTT-TATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACACGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGC-TTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACA-GGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACACGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGC-TTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACACGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACACGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACACGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGAC-TTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACCTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGG-GCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGAC-TTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACCTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTG-GGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACCTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGA-CTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACCTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGG-GCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGA-CTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACCTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGG-GCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACCTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTT---TGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGAC--CTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGG-CCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACCTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGT-GGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggaggctgggggtgagatagggcttgcttctttttttcctctgagtgcagCACAGCCTCTACGTGGGGGCTGCAAGTCGGAATTCTCCAGTTTCCTCTGTCCAGCT-CTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACCGTAGCCAACaggtatgagggtgctggatgagggacagggtagagaggtgcctcaagtggag Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGT-GGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggaggctgggggtgagatagggcttgcttctttttttcctctgagtgcagCACAGCCTCTACGTGGGGGCTGCAAGTCGGAATTCTCCAGTTTCCTCTGTCCAGC-TCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACCGTAGCCAACaggtatgagggtgctggatgagggacagggtagagaggtgcctcaagtggag Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggaggctgggggtgagatagggcttgcttctttttttcctctgagtgcagCACAGCCTCTACGTGGGGGCTGCAAGTCGGAATTCTCCAGTTTCCTCTGTCCAGCTCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACCGTAGCCAACAGgtatgagggtgctggatgagggacagggtagagaggtgcctcaagtggag Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGT-GGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggaggctgggggtgagatagggcttgcttctttttttcctctgagtgcagCACAGCCTCTACGTGGGGGCTGCAAGTCGGAATTCTCCAGTTTCCTCTGTCCAGCT-CTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACCGTAGCCAACAGgtatgagggtgctggatgagggacagggtagagaggtgcctcaagtggag Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGT-GGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggaggctgggggtgagatagggcttgcttctttttttcctctgagtgcagCACAGCCTCTACGTGGGGGCTGCAAGTCGGAATTCTCCAGTTTCCTCTGTCCAGCT-CTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACCGTAGCCAACAGgtatgagggtgctggatgagggacagggtagagaggtgcctcaagtggag Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggaggctgggggtgagatagggcttgcttctttttttcctctgagtgcagCACAGCCTCTACGTGGGGGCTGCAAGTCGGAATTCTCCAGTTTCCTCTGTCCAGCTCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACCGTAGCCAACAGgtatgagggtgctggatgagggacagggtagagaggtgcctcaagtggag Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggaggctgggggtgagatagggcttgcttctttttttcctctgagtgcagCACAGCCTCTACGTGGGGGCTGCAAGTCGGAATTCTCCAGTTTCCTCTGTCCAGCTCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACCGTAGCCAACAGgtatgagggtgctggatgagggacagggtagagaggtgcctcaagtggag Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggaggctgggggtgagatagggcttgcttctttttttcctctgagtgcagCACAGCCTCTACGTGGGGGCTGCAAGTCGGAATTCTCCAGTTTCCTCTGTCCAGCTCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACCGTAGCCAACAGgtatgagggtgctggatgagggacagggtagagaggtgcctcaagtggag #### Sf1_ID1665_6 --> 1 - 0 Original Alignment aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAG-CCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagaGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATG-CAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from CESAR aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAG-CCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagaGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAAT-GCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Spaln_aa2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAG-CCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGcCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGC-AAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Spaln_nt2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAG-CCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATG-CAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Pairagon AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAG-CCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATG-CAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Exonerate_protein2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAG-CCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACA gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Exonerate_coding2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCT---TCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCC--TCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGC-AAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from GeneWise AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCT-GGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTCGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACC-ATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCT-GGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTCGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCAC-ACCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTCGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCT-GGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTCGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACA-CCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCT-GGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTCGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACA-CCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTCGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGG---TGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCT--CGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACA-CCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTCGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGCACACGGCTGAAGGAGAAGAAGCCTGGAGATTTAT-GGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from CESAR GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGCACACGGCTGAAGGAGAAGAAGCCTGGAGATTTA-TGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGcACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATG-GATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGCACACGGCTGAAGGAGAAGAAGCCTGGAGATTTAT-GGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Pairagon GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGCACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATG-GATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGCACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGCACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGCACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGT-TACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from CESAR GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGG-TTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTcAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGTT-ACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGTT-ACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCG-GTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGAC-CGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCCGAGAAAAGGACTCTGGTCGGTCCCGAGGCTCAG-CCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGAC-CGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCCGAGAAAAGGACTCTGGTCGGTCCCGAGGCTCA-GCCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGAC-CGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACcCGAGAAAAGGACTCTGGTCGGTCCCGAGGCTCAGC----CCCCCTACAGGTGTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGAC-CGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCCGAGAAAAGGACTCTGGTCGGTCCCGAGGCTCAG-CCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGA-CCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCCGAGAAAAGGACTCTGGTCGGTCCCGAGGCTCAGCCCCC----CTACAGGTGTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCCGAGAAAAGGACTCTGGTCGGTCCCGAGGCTCAGCCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCCGAGAAAAGGACTCTGGTCGGTCCCGAGGCTCAGCCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCCGAGAAAAGGACTCTGGTCGGTCCCGAGGCTCAGCCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagagAAGGAGGAAATGGAGACAGTTCACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTG-GGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from CESAR agGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagagAAGGAGGAAATGGAGACAGTTCACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACT-GGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aagtttttacagttaggagagttggctatgttctgtgttttcaaca gAGAAGGAGGAAATGGAGACAGTTcACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGG-GAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagAGAAGGAGGAAATGGAGACAGTTCACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGG-GAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Pairagon AGGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagAGAAGGAGGAAATGGAGACAGTTCACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTG-GGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Exonerate_protein2genome AGGAGGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACT--GAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaaCAGAGAAGGAGGAAATGGAGACAGTTCACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGG---GAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Exonerate_coding2genome AGGAGGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACT--GAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaaCAGAGAAGGAGGAAATGGAGACAGTTCACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGG---GAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from GeneWise -----------------------CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagTTGGCTATGTTCTGTGTTTTCAACAGAGAAGGAGGAAATGGAGACAGTTCACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGG-GAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCT-TTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTCTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGA-GAACTCTCAG---ggtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCT-TTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTCTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAG-AGAACTCTCAG---ggtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAG-ATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGGAG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTCTTGGAAAAgATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGAGAACTCTCAGGGTGAGAgctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCT-TTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagAT---TGATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTCTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGA-GAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCT-TTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagAT---TGATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTCTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGA-GAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCT-TTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTCTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGAGAACTCTCAGGGTGAgagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCT-TTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTCTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGAGAACTCTCAGGGTGAgagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG taaggaggaaggcattgggtttcagcccattcataatttattataattagATTGAT---CCTTCTGTGGGCCCTAAGATCCCTCAGGCTCTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGAGAACTCTCAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGa cctggacatttgaaaagtgatccctgacgaacctgtttctggcattttagAGAGCGGCAACTGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACAA-GGCAGCCCCTGGCATGagtaagttggatggagaacacctcatacagatccttgaatacctagttgca Alignment from CESAR AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGa cctggacatttgaaaagtgatccctgacgaacctgtttctggcattttagAGAGCGGCAACTGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACA-AGGCAGCCCCTGGCATGagtaagttggatggagaacacctcatacagatccttgaatacctagttgca Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacatttgaaaagtgatccctgacgaacctgtttctggcattttagagagCGGCAACTGTGC---GGCATCGCACAAGTGGTCATCTCTCGGATCACAAG-GCAGCCCCTGGCATGAgtaagttggatggagaacacctcatacagatccttgaatacctagttgca Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacatttgaaaagtgatccctgacgaacctgtttctggcattttagAGAGCGGCAACTGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACAA-GGCAGCCCCTGGCATGAgtaagttggatggagaacacctcatacagatccttgaatacctagttgca Alignment from Pairagon AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacatttgaaaagtgatccctgacgaacctgtttctggcattttagAGAGCGGCAACTGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACAA-GGCAGCCCCTGGCATGAgtaagttggatggagaacacctcatacagatccttgaatacctagttgca Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacatttgaaaagtgatccctgacgaacctgtttctggcattttagAGAGCGGCAACTGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACAAGGCAGCCCCTGGCATGAgtaagttggatggagaacacctcatacagatccttgaatacctagttgca Alignment from Exonerate_coding2genome AGAGCTGCGGCTGTGGG---CATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacatttgaaaagtgatccctgacgaacctgtttctggcattttagAGAGCGGCAACTGTG--CGGCATCGCACAAGTGGTCATCTCTCGGATCAC-AAGGCAGCCCCTGGCATGAgtaagttggatggagaacacctcatacagatccttgaatacctagttgca Alignment from GeneWise AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacatttgaaaagtgatccctgacgaacctgtttctggcattttagagagCGGCAACTGTGC---GGCATCGCACAAGTGGTCATCTCTCGGATCACAAG-GCAGCCCCTGGCATGAgtaagttggatggagaacacctcatacagatccttgaatacctagttgca #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCC-TATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacaggCAGTTGGGGACAGCCCTATGTGAGTGCCACCACTGGAGCTGTGGCTA-TGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from CESAR gCAGTTGGGGACAGCC-TATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacaggCAGTTGGGGACAGCCCTATGTGAGTGCCACCACTGGAGCTGTGGCT-ATGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacaggcagT---TGGGGACAGCCCTATGTGAGTGCCACCACTGGAGCTGTGGCTAT-GCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCC-TATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCCTATGTGAGTGCCACCACTGGAGCTGTGGCTA-TGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Pairagon GCAGTTGGGGACAG-CCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCCTATGTGAGTGCCACCACTGGAGCTGTGGCTA-TGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCCTATGTGAGTGCCACCACTGGAGCTGTGGCTATGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Exonerate_coding2genome GCAGTTGGGGACAGC---CTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACA--GCCCTATGTGAGTGCCACCACTGGAGCTGTGGCTAT-GCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCCTATGTGAGTGCCACCACTGGAGCTGTGGCTATGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCAGAA-AAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcctctgcttctgctgagtccttccttttgtaattgtgttttaggCCA---CCTGGGAGCCTATCAGAACAAGATCTCTCATCTAGAGTCCATGCTCTGGA-ACTCCAAGAGGACTTGCAGAGGgtaagatgacagcctggcgggggtgcacagggctgcccctgacaagggct Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAA-AAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcctctgcttctgctgagtccttccttttgtaattgtgttttaggCCA---CCTGGGAGCCTATCAGAACAAGATCTCTCATCTAGAGTCCATGCTCTGG-AACTCCAAGAGGACTTGCAGAGGgtaagatgacagcctggcgggggtgcacagggctgcccctgacaagggct Alignment from Spaln_aa2Genome ------CCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAG tgtggagcctctgcttctgctgagtccttccttttgtaattgtgttttagGCCACCTGGGAGCCTATCAGAACAAGATCTCTCATCTAGAGTCCATGCTCTGGAA-CTCCAAGAGGACTTGCAGAGGgtaagatgacagcctggcgggggtgcacagggctgcccctgacaagggct Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAA-AAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcctctgcttctgctgagtccttccttttgtaattgtgttttagGCC---ACCTGGGAGCCTATCAGAACAAGATCTCTCATCTAGAGTCCATGCTCTGGAA-CTCCAAGAGGACTTGCAGAGGgtaagatgacagcctggcgggggtgcacagggctgcccctgacaagggct Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAA-AAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcctctgcttctgctgagtccttccttttgtaattgtgttttagGCC---ACCTGGGAGCCTATCAGAACAAGATCTCTCATCTAGAGTCCATGCTCTGGAA-CTCCAAGAGGACTTGCAGAGGgtaagatgacagcctggcgggggtgcacagggctgcccctgacaagggct Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcctctgcttctgctgagtccttccttttgtaattgtgttttagGCCA---CCTGGGAGCCTATCAGAACAAGATCTCTCATCTAGAGTCCATGCTCTGGAACTCCAAGAGGACTTGCAGAGGgtaagatgacagcctggcgggggtgcacagggctgcccctgacaagggct Alignment from Exonerate_coding2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcctctgcttctgctgagtccttccttttgtaattgtgttttagGCCA---CCTGGGAGCCTATCAGAACAAGATCTCTCATCTAGAGTCCATGCTCTGGAACTCCAAGAGGACTTGCAGAGGgtaagatgacagcctggcgggggtgcacagggctgcccctgacaagggct Alignment from GeneWise tgtggagcctctgcttctgctgagtccttccttttgtaattgtgttttaggccacctgggagcctatcagaacaagatctctcatctagagtccatgctctggaactccaagaggacttgcagagggtaagatgacagcctggcgggggtgcacagggctgcccctgacaagggct #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGAC-TCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACCTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCA-GACTCTGTCTCTACGGAATTCCATCAGTAAGagtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGAC-TCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACCTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCA-GACTCTGTCTCTACGGAATTCCATCAGTAAGagtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACCTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGA-CTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACCTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAG-ACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGA-CTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACCTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAG-ACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACCTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACCTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACCTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAG-CACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag aggggggcacaacaaagatcaccttttcctaaagttatgaattcttccagCTCCTGAGGAAGCGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTACGACAATCTGTTCTCACTTCCAGCCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCC-CCACACCTCATACaggtaaaaactagggtgaactcatgtcatagggtggggtgaactaacatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAG-CACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag aggggggcacaacaaagatcaccttttcctaaagttatgaattcttccagCTCCTGAGGAAGCGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTACGACAATCTGTTCTCACTTCCAGCCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCC-CCACACCTCATACaggtaaaaactagggtgaactcatgtcatagggtggggtgaactaacatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAG-CACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcaccttttcctaaagttatgaattcttccagCTCCTGAGGAAGCGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTACGACAATCTGTTCTCACTTCCAGcCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCAC-CCCCACACCTCATACAGgtaaaaactagggtgaactcatgtcatagggtggggtgaactaacatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGC-ACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcaccttttcctaaagttatgaattcttccagCTCCTGAGGAAGCGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTACGACAATCTGTTCTCACTTCCAGCCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCC-CACACCTCATACAGgtaaaaactagggtgaactcatgtcatagggtggggtgaactaacatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAG-CACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcaccttttcctaaagttatgaattcttccagCTCCTGAGGAAGCGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTACGACAATCTGTTCTCACTTCCAGCCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCC-CACACCTCATACAGgtaaaaactagggtgaactcatgtcatagggtggggtgaactaacatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcaccttttcctaaagttatgaattcttccagCTCCTGAGGAAGCGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTACGACAATCTGTTCTCACTTCCAGCCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCACACCTCATACAGgtaaaaactagggtgaactcatgtcatagggtggggtgaactaacatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcaccttttcctaaagttatgaattcttccagCTCCTGAGGAAGCGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTACGACAATCTGTTCTCACTTCCAGCCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCACACCTCATACAGgtaaaaactagggtgaactcatgtcatagggtggggtgaactaacatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG aggggggcacaacaaagatcaccttttcctaaagttatgaattcttccagCTCCTGAGGAAGCGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTACGACAATCTGTTCTCACTTCCAGCCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCACACCTCATACAGgtaaaaactagggtgaactcatgtcatagggtggggtgaactaacatcat #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGC-TATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg taggcaagggcatggttttgcatgaaggaccgattgtctcctgtctgaagtgTTTGCCTTTTCCAGTAGCCTATGCCTTTCTGTTGATTGCCAAGTCAC-GCAGGGAATTGGCTCATCTTGCTCATCTGTGGCTggtagagttgaaatcatcagtgcatggagagctgagctcaggacttatgtg Alignment from CESAR tgTTTGCCTTCTCCAGCAGC-TATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg taggcaagggcatggttttgcatgaaggaccgattgtctcctgtctgaagtgTTTGCCTTTTCCAGTAGCCTATGCCTTTCTGTTGATTGCCAAGTCA-CGCAGGGAATTGGCTCATCTTGCTCATCTGTGGCTggtagagttgaaatcatcagtgcatggagagctgagctcaggacttatgtg Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG taggcaagggcatggttttgcatgaaggaccgattgtctcctgtctgaagTGTTTGCCTTTTCCAGTAGCCTATGCCTTTCTGTTGATTGCCAAGTCACGCAGGGAATTGGCTCATCTTGCTCATCTGTGGCTGgtagagttgaaatcatcagtgcatggagagctgagctcaggacttatgtg Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGC-TATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG taggcaagggcatggttttgcatgaaggaccgattgtctcctgtctgaagTGTTTGCCTTTTCCAGTAGCCTATGCCTTTCTGTTGATTGCCAAGTCAC-GCAGGGAATTGGCTCATCTTGCTCATCTGTGGCTGgtagagttgaaatcatcagtgcatggagagctgagctcaggacttatgtg Alignment from Pairagon TGTTTGCCTTCTCCAGCAG-CTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG taggcaagggcatggttttgcatgaaggaccgattgtctcctgtctgaagTGTTTGCCTTTTCCAGTAGCCTATGCCTTTCTGTTGATTGCCAAGTCAC-GCAGGGAATTGGCTCATCTTGCTCATCTGTGGCTGgtagagttgaaatcatcagtgcatggagagctgagctcaggacttatgtg Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG taggcaagggcatggttttgcatgaaggaccgattgtctcctgtctgaagTGTTTGCCTTTTCCAGTAGCCTATGCCTTTCTGTTGATTGCCAAGTCACGCAGGGAATTGGCTCATCTTGCTCATCTGTGGCTGgtagagttgaaatcatcagtgcatggagagctgagctcaggacttatgtg Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG taggcaagggcatggttttgcatgaaggaccgattgtctcctgtctgaagTGTTTGCCTTTTCCAGTAGCCTATGCCTTTCTGTTGATTGCCAAGTCACGCAGGGAATTGGCTCATCTTGCTCATCTGTGGCTGgtagagttgaaatcatcagtgcatggagagctgagctcaggacttatgtg Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG taggcaagggcatggttttgcatgaaggaccgattgtctcctgtctgaagTGTTTGCCTTTTCCAGTAGCCTATGCCTTTCTGTTGATTGCCAAGTCACGCAGGGAATTGGCTCATCTTGCTCATCTGTGGCTGgtagagttgaaatcatcagtgcatggagagctgagctcaggacttatgtg #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGC-TCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag atgacagagaatattgcacccctcactgtctgcttggcttttccttccagggATGGGGGTCCTTCGCCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGG-CGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCaggtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from CESAR ggATGGGGGTCCTTCGC-TCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag atgacagagaatattgcacccctcactgtctgcttggcttttccttccagggATGGGGGTCCTTCGCCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAG-GGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCaggtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGC-TCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCcTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGG-GGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCG-CTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTA-GGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Pairagon GGATGGGGGTCCTTCG-CTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCT-AGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGAC-CTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttaggTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGT-AATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATggtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGAC-CTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttaggTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAG-TAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATggtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGAC-CTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCA-GTAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGA-CCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCA-GTAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGT-GCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAGGCTGGTCGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGC-CCACCGAACCATCATCTCTATGCTGTGCctgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGT-GCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAGGCTGGTCGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTG-CCCACCGAACCATCATCTCTATGCTGTGCctgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAGGCTGGTCGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGT-GCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAGGCTGGTCGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGC-CCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGT-GCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAGGCTGGTCGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGC-CCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAGGCTGGTCGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAGGCTGGTCGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAGGCTGGTCGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGAC-CTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCCTGGCTCAATCTATCTACATGTCTGGAGTGTTGG-GGGAGCTGCCTTGTTTGGTTGTCTAGCTGACaggtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGAC-CTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCCTGGCTCAATCTATCTACATGTCTGGAGTGTTG-GGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACaggtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGAC-CTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCCTGGCTCAATCTATCTACATGTCTGGAGTGTTGG-GGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGA-CCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCCTGGCTCAATCTATCTACATGTCTGGAGTGTTGG-GGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGA---GCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCCTGGC---TCAATCTATCTACATGTCTGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTT-GCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggttcttccctttgttgttagcagttactttttctctcctgcttctcagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTCGCATTTCAAAACTGGCACCACCTTCAGCTAGCAA-ATCTGTGCCAATATTTGTCTTGCTTATACCCACCaggtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTT-GCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggttcttccctttgttgttagcagttactttttctctcctgcttctcagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTCGCATTTCAAAACTGGCACCACCTTCAGCTAGCA-AATCTGTGCCAATATTTGTCTTGCTTATACCCACCaggtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTCGCATTTCAAAACTGGCACCACCTTCAGCTAGCAAATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCA-TTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTCGCATTTCAAAACTGGCACCACCTTCAGCTAGCAA-ATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTT-GCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTCGCATTTCAAAACTGGCACCACCTTCAGCTAGCAA-ATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCA-TTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCA--ATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTCGCATTTCAAAACTGGCACCACCTTCAGCTAGCAAA---TCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCA-TTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCA--ATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTCGCATTTCAAAACTGGCACCACCTTCAGCTAGCAAA---TCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTCGCATTTCAAAACTGGCACCACCTTCAGCTAGCAAATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCC-TTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAG-GTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACaggtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCC-TTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGA-GGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACaggtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCC-TTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAG-GTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGG-CCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAG-GTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Exonerate_coding2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACC-CTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaatgagaccacaccaacatcatctcacaattcacaattccaggTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAAC-AGAAGAGGGGCCTAAGCTGTGTATAGAGgtctgatctgtttgttcctagacactgcctgaaatccgacccaagtccca Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACC-CTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaatgagaccacaccaacatcatctcacaattcacaattccaggTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAAC-AGAAGAGGGGCCTAAGCTGTGTATAGAGgtctgatctgtttgttcctagacactgcctgaaatccgacccaagtccca Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACC-CTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaatgagaccacaccaacatcatctcacaattcacaattccagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCcCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAGAA-GAGGGGCCTAAGCTGTGTATAGAGgtctgatctgtttgttcctagacactgcctgaaatccgacccaagtccca Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCA-CCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaatgagaccacaccaacatcatctcacaattcacaattccagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACA-GAAGAGGGGCCTAAGCTGTGTATAGAGgtctgatctgtttgttcctagacactgcctgaaatccgacccaagtccca Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCA-CCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaatgagaccacaccaacatcatctcacaattcacaattccagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAAC-AGAAGAGGGGCCTAAGCTGTGTATAGAGgtctgatctgtttgttcctagacactgcctgaaatccgacccaagtccca Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaatgagaccacaccaacatcatctcacaattcacaattccagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAGAAGAGGGGCCTAAGCTGTGTATAGAGgtctgatctgtttgttcctagacactgcctgaaatccgacccaagtccca Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCAC---CCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaatgagaccacaccaacatcatctcacaattcacaattccagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTC--ACCCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACA-GAAGAGGGGCCTAAGCTGTGTATAGAGgtctgatctgtttgttcctagacactgcctgaaatccgacccaagtccca Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaatgagaccacaccaacatcatctcacaattcacaattccagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAGAAGAGGGGCCTAAGCTGTGTATAGAGgtctgatctgtttgttcctagacactgcctgaaatccgacccaagtccca #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAG-ACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagctaaatttacatatttttttacagGTGCGGTTACAGCACCCAAAGCACATATCGGGGCATTGTGGACT-TGTAGCCAAGACATACCGCCATGAGTCAgtgagttgcccacttgttagtggtagagagagtcatcagagcaggtgggg Alignment from CESAR GTGCGGTTACAG-ACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagctaaatttacatatttttttacagGTGCGGTTACAGCACCCAAAGCACATATCGGGGCATTGTGGAC-TTGTAGCCAAGACATACCGCCATGAGTCAgtgagttgcccacttgttagtggtagagagagtcatcagagcaggtgggg Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagctaaatttacatatttttttacagGTGCGGTTACAGCACCCAAAGCACATATCGGGGCATTGTGGACTTGTAGCCAAGACATACCGCCATGAGTCAgtgagttgcccacttgttagtggtagagagagtcatcagagcaggtgggg Alignment from Spaln_nt2Genome GTGCGGTTACAG-ACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagctaaatttacatatttttttacagGTGCGGTTACAGCACCCAAAGCACATATCGGGGCATTGTGGACT-TGTAGCCAAGACATACCGCCATGAGTCAgtgagttgcccacttgttagtggtagagagagtcatcagagcaggtgggg Alignment from Pairagon GTGCGGTTACAG-ACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagctaaatttacatatttttttacagGTGCGGTTACAGCACCCAAAGCACATATCGGGGCATTGTGGACT-TGTAGCCAAGACATACCGCCATGAGTCAgtgagttgcccacttgttagtggtagagagagtcatcagagcaggtgggg Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagctaaatttacatatttttttacagGTGCGGTTACAGCACCCAAAGCACATATCGGGGCATTGTGGACTTGTAGCCAAGACATACCGCCATGAGTCAgtgagttgcccacttgttagtggtagagagagtcatcagagcaggtgggg Alignment from Exonerate_coding2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagctaaatttacatatttttttacagGTGCGGTTACAGCACCCAAAGCACATATCGGGGCATTGTGGACTTGTAGCCAAGACATACCGCCATGAGTCAgtgagttgcccacttgttagtggtagagagagtcatcagagcaggtgggg Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagctaaatttacatatttttttacagGTGCGGTTACAGCACCCAAAGCACATATCGGGGCATTGTGGACTTGTAGCCAAGACATACCGCCATGAGTCAgtgagttgcccacttgttagtggtagagagagtcatcagagcaggtgggg #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAG-CCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCCACCCAGCCACACAAACATCTTCATAGCAGGTT-TACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAG-CCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCCACCCAGCCACACAAACATCTTCATAGCAGGT-TTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCA-CCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCCaCCCAGCCACACAAACATCTTCATAGCAGGTTT-ACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGC-CACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCCACCCAGCCACACAAACATCTTCATAGCAGGTT-TACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAG-CCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCCACCCAGCCACACAAACATCTTCATAGCAGGTT-TACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCCACCCAGCCACACAAACATCTTCATAGCAGGTTTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCCACCCAGCCACACAAACATCTTCATAGCAGGTTTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCCACCCAGCCACACAAACATCTTCATAGCAGGTTTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa #### Slc29a2_ID790_4 --> 1 - 1 Original Alignment cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATA-CTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagcATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACCTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACT-GAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATtgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from CESAR cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATA-CTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagcATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACCTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGG-ACTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATtgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Spaln_aa2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATA-CTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATAcCTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGA-CTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Spaln_nt2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATAC-TACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACCTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGAC-TGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Pairagon CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATA-CTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACCTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGAC-TGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Exonerate_protein2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACCTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Exonerate_coding2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACCTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from GeneWise CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACCTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc #### Slc29a2_ID791_5 --> 2 - 1 Original Alignment ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGT-GGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGC-CATGTCTTTGGCCagtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from CESAR ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGT-GGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATG-CCATGTCTTTGGCCagtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Spaln_aa2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGT-GGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCcGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCC-ATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Spaln_nt2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGT-GGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGC-CATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Pairagon CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAG-TGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGC-CATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Exonerate_protein2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGT-GGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCCATGTCTTTGGCCAGtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Exonerate_coding2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGG---CCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGC--CGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCC-ATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from GeneWise CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCCATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttaggtGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCA-CCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttaggtGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGC-ACCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCACCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCA-CCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCA-CCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCACCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCT-TGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCAC-CTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCACCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTC-TTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCA-AGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTC-TTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCCTTCACAGTCACCCTATCCGTTTTTCCTGCTATC-AAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCAAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCT-TCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCA-AGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGT-CTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCA-AGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCAAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCAAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCAAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttttttgtttttttaactgtgtcttttatgttcaacagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGTC-TAACATGACAGTGAAGgtgagtagatgcagactgctcctcagagtagtcaagtgttgtacggatgg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttttttgtttttttaactgtgtcttttatgttcaacagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGTC-TAACATGACAGTGAAGgtgagtagatgcagactgctcctcagagtagtcaagtgttgtacggatgg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttttttgtttttttaactgtgtcttttatgttcaacagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGcTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCT-AACATGACAGTGAAGgtgagtagatgcagactgctcctcagagtagtcaagtgttgtacggatgg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttttttgtttttttaactgtgtcttttatgttcaacagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCT-AACATGACAGTGAAGgtgagtagatgcagactgctcctcagagtagtcaagtgttgtacggatgg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttttttgtttttttaactgtgtcttttatgttcaacagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCT-AACATGACAGTGAAGgtgagtagatgcagactgctcctcagagtagtcaagtgttgtacggatgg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttttttgtttttttaactgtgtcttttatgttcaacagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTAACATGACAGTGAAGgtgagtagatgcagactgctcctcagagtagtcaagtgttgtacggatgg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttttttgtttttttaactgtgtcttttatgttcaacagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTAACATGACAGTGAAGgtgagtagatgcagactgctcctcagagtagtcaagtgttgtacggatgg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttttttgtttttttaactgtgtcttttatgttcaacagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGCTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTAACATGACAGTGAAGgtgagtagatgcagactgctcctcagagtagtcaagtgttgtacggatgg #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAAC-GGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagcCACCTGGAGTTGAATCGGAATCAGATCTATCCCACCCAGAGCCTTCTCTC-CTACAGAAAGCTGCGCAGGatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from CESAR cCGCCTGGAGTTGAAC-GGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagcCACCTGGAGTTGAATCGGAATCAGATCTATCCCACCCAGAGCCTTCTCTC-CTACAGAAAGCTGCGCAGGatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATCGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAA-CGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATCGGAATCAGATCTATCCCACCCAGAGCCTTCTCT-CCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Pairagon CCGCCTGGAGTTGAA-CGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATCGGAATCAGATCTATCCCACCCAGAGCCTTCTCT-CCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATCGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_coding2genome ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagccacctggagttgaatcggaatcagatctatcccacccagagccttctctcctacagaaagctgcgcaggatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATCGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccaggACACTGAACAACAATCAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATTC-TAAGCTTCGTACTttgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from CESAR gACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccaggACACTGAACAACAATCAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATA-TTCTAAGCTTCGTACTttgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Spaln_aa2Genome GACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATcAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATTCT-AAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Spaln_nt2Genome GACCCTGAACAACAA-CAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATCAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATAT-TCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Pairagon GACCCTGAACAACAA-CAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATCAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATAT-TCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATCAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATTCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Exonerate_coding2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATCAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATTCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATCAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATTCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATT-CCTAGATAAGAAGATGGTCacgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from CESAR ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGT-ATTCCTAGATAAGAAGATGGTCacgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Spaln_aa2Genome ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAcGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTA-TTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Spaln_nt2Genome ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATT-CCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Pairagon ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTA-TTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGT---TTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAA--CGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTA-TTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCT-CTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaacccacttgctgtggccagtaagtcctcttgtgcttgtcactgcagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCATGTGAACAAAAAGGCACCTAGATCAGTTTGTGAACTTCTCCGAGCAGA-GGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGC---TACAAATCAGTCATGGAACTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtaagtaataatgatcctagtgtggagagggattgaatgtgtgtaacaat Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCT-CTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaacccacttgctgtggccagtaagtcctcttgtgcttgtcactgcagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCATGTGAACAAAAAGGCACCTAGATCAGTTTGTGAACTTCTCCGAGCAGA-GGAAAAGCTGATAAAGCGGCAAGAGGAATTGGAT---AGCTACAAATCAGTCATGGAACTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtaagtaataatgatcctagtgtggagagggattgaatgtgtgtaacaat Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaacccacttgctgtggccagtaagtcctcttgtgcttgtcactgcagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCATGTGAACAAAAAGGCACCTAGATCAGTTTGTGAACTTCTCCGAGCAGAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGAT---AGCTACAAATCAGTCATGGAACTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtaagtaataatgatcctagtgtggagagggattgaatgtgtgtaacaat Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTC-TAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaacccacttgctgtggccagtaagtcctcttgtgcttgtcactgcagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCATGTGAACAAAAAGGCACCTAGATCAGTTTGTGAACTTCTCCGAGCAG-AGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATA---GCTACAAATCAGTCATGGAACTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtaagtaataatgatcctagtgtggagagggattgaatgtgtgtaacaat Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGC-TCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaacccacttgctgtggccagtaagtcctcttgtgcttgtcactgcagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCATGTGAACAAAAAGGCACCTAGATCAGTTTGTGAACTTCTCCGAGCAG-AGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATA---GCTACAAATCAGTCATGGAACTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtaagtaataatgatcctagtgtggagagggattgaatgtgtgtaacaat Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaacccacttgctgtggccagtaagtcctcttgtgcttgtcactgcagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCATGTGAACAAAAAGGCACCTAGATCAGTTTGTGAACTTCTCCGAGCAGAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGAT---AGCTACAAATCAGTCATGGAACTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtaagtaataatgatcctagtgtggagagggattgaatgtgtgtaacaat Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaacccacttgctgtggccagtaagtcctcttgtgcttgtcactgcagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCATGTGAACAAAAAGGCACCTAGATCAGTTTGTGAACTTCTCCGAGCAGAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGAT---AGCTACAAATCAGTCATGGAACTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtaagtaataatgatcctagtgtggagagggattgaatgtgtgtaacaat Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaacccacttgctgtggccagtaagtcctcttgtgcttgtcactgcagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCATGTGAACAAAAAGGCACCTAGATCAGTTTGTGAACTTCTCCGAGCAGAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGAT---AGCTACAAATCAGTCATGGAACTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtaagtaataatgatcctagtgtggagagggattgaatgtgtgtaacaat #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTG-GTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGCGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAG-TGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTG-GTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGCGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAA-GTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGCGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTG-GTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGCGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAA-GTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTG-GTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGCGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAA-GTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGCGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGT---ACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTG--CGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAA-AGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGCGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGG-CTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGCTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAG-GTTGGAAGTGCCAggtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTA-CTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGCTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAA-GGTTGGAAGTGCCAggtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTA-CTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGCTTaCTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGG-TTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGC-TACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGCTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAG-GTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGC-TACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGCTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAG-GTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGCTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGCTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGCTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTA-CGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACTGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCT-TGAGCGCCTCTCTGACTCTGCCAAACAAggtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGG-CCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACTGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGC-TTGAGCGCCTCTCTGACTCTGCCAAACAAggtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTA-CGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC--TTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTAcTGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGcgCTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTAC-GGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGC---GCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACTGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTT-GAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTAC-GGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACTGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTT-GAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGG-CCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC--TTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACTGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGG-CCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC--TTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACTGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTA-CGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTC---------------------------------------GAGCGCCTCTCTGACTCCGCCAAACAA-------------- caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACTGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTGAGCGCCTCTCTGACTCTGCCAAACAAGGTACTGCCTGAAAGATTGCAACACTCCACCCAACACCCATTATCCATCTT #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCT-ATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gggtggcgcctggtgtgcacattcatctccaaacatcttttcactcctaggcCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTTGGAACCCAGGAAG-GAACCAACTCAAGaggtatgagttcacactgttgctgtgttcacactgtgcttgcaccattgctg Alignment from CESAR gcCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gggtggcgcctggtgtgcacattcatctccaaacatcttttcactcctaggcCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTTGGAACCCAGGAA-GGAACCAACTCAAGaggtatgagttcacactgttgctgtgttcacactgtgcttgcaccattgctg Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggcgcctggtgtgcacattcatctccaaacatcttttcactcctagGCCTGGCAGACAACTATATCcCCCATTTCTGCTGCACTGAGCAGTCTTGGAACCCAGGAAGG-AACCAACTCAAGAGgtatgagttcacactgttgctgtgttcacactgtgcttgcaccattgctg Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCT-ATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggcgcctggtgtgcacattcatctccaaacatcttttcactcctagGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTTGGAACCCAGGAAG-GAACCAACTCAAGAGgtatgagttcacactgttgctgtgttcacactgtgcttgcaccattgctg Alignment from Pairagon GCCTGGCAGACAACTATAT-CCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggcgcctggtgtgcacattcatctccaaacatcttttcactcctagGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTTGGAACCCAGGAAG-GAACCAACTCAAGAGgtatgagttcacactgttgctgtgttcacactgtgcttgcaccattgctg Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggcgcctggtgtgcacattcatctccaaacatcttttcactcctagGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTTGGAACCCAGGAAGGAACCAACTCAAGAGgtatgagttcacactgttgctgtgttcacactgtgcttgcaccattgctg Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggcgcctggtgtgcacattcatctccaaacatcttttcactcctagGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTTGGAACCCAGGAA-GGAACCAACTCAAGAGgtatgagttcacactgttgctgtgttcacactgtgcttgcaccattgctg Alignment from GeneWise ----------------------------------------------------CTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG GGGTGGCGCCTGGTGTGCACATTCATCTCCAAACATCTTTTCACTCCTAGGCCTGGCAGACAACTATATCCCCCATTTCTGCTGCACTGAGCAGTCTTGGAACCCAGGAAGGAACCAACTCAAGAGgtatgagttcacactgttgctgtgttcacactgtgcttgcaccattgctg #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTA-GTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTACGTGGAATATCACACCCGAATCCGGGACACCT-CCAGAGGGCAGACCGTGTGATGCACTCCCACAAGtgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTA-GTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTACGTGGAATATCACACCCGAATCCGGGACACC-TCCAGAGGGCAGACCGTGTGATGCACTCCCACAAGtgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTACGTGGAATATCACACCCGAATCCGGGACACCTCCAGAGGGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTA-GTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTACGTGGAATATCACACCCGAATCCGGGACACCT-CCAGAGGGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTA-GTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTACGTGGAATATCACACCCGAATCCGGGACACCT-CCAGAGGGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTACGTGGAATATCACACCCGAATCCGGGACACCTCCAGAGGGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTACGTGGAATATCACACCCGAATCCGGGACACCTCCAGAGGGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTGC------------------------------------------------ actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTACGTGGAATATCACACCCGAATCCGGGACACCTCCAGAGGGCAGACCGTGTGATGCACTCCCACAAGTGTAAGTCACACCTGAGGCTCCACACGATGGGTGGCGCCTGGTGTGCACAT #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTG-GGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGCGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACG-AATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTG-GGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGCGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACG-AATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGA-GGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGCGGgGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAATC-CTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGG-GAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGG---CATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGCGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAA-TCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTG-GGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGCGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAA-TCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTG-GGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAA--GTCCTCATCACCGGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGCGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTG-GGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAA--GTCCTCATCACCGGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGCGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGCGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTC-CTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatgaagtccagtagggaggtgaaagatactattttttaacaggGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACA-CTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTC-CTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatgaagtccagtagggaggtgaaagatactattttttaacaggGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACC-ACACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTC-CTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatgaagtccagtagggaggtgaaagatactattttttaacagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCcCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAC-TTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTT-CCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatgaagtccagtagggaggtgaaagatactattttttaacagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACA-CTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTT-CCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatgaagtccagtagggaggtgaaagatactattttttaacagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCAC-ACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTC-CTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGAC--CACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatgaagtccagtagggaggtgaaagatactattttttaacagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAC---TTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTT---CCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatgaagtccagtagggaggtgaaagatactattttttaacagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC--TTCCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCA-CACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTC-CTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatgaagtccagtagggaggtgaaagatactattttttaacagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAC-TTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGT-GAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTCGAGGGCAACAGCTCGATCACCCGGGAAGAAT-CTCCAAGATGAAACAAGAGCTAGAAgcgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGT-GAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTCGAGGGCAACAGCTCGATCACCCGGGAAGAA-TCTCCAAGATGAAACAAGAGCTAGAAgcgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTCGAGGGCAACAGCTCGATCACCCGGGAAGAATCTCCAAGATGAAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGT-GAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTCGAGGGCAACAGCTCGATCACCCGGGAAGAAT-CTCCAAGATGAAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGT-GAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTCGAGGGCAACAGCTCGATCACCCGGGAAGAA-TCTCCAAGATGAAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTCGAGGGCAACAGCTCGATCACCCGGGAAGAATCTCCAAGATGAAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTCGAGGGCAACAGCTCGATCACCCGGGAAGAATCTCCAAGATGAAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTCGAGGGCAACAGCTCGATCACCCGGGAAGAATCTCCAAGATGAAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag #### Sptbn2_ID626_21 --> 0 - 0 Original Alignment TTGTGGGTGACTGAG-CGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCCGGCTTCCTATGGCCAGCTCTCTGGAACATG-GAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from CESAR TTGTGGGTGACTGAG-CGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCCGGCTTCCTATGGCCAGCTCTCTGGAACATG-GAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Spaln_aa2Genome TTGTGGGTGACTGAG-CGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGcCGGCTTCCTATGGCCAGCTCTCTGGAACATGG-AAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Spaln_nt2Genome TTGTGGGTGACTGAGC-GGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCCGGCTTCCTATGGCCAGCTCTCTGGAACATGG-AAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Pairagon TTGTGGGTGACTGAG-CGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCCGGCTTCCTATGGCCAGCTCTCTGGAACATGG-AAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Exonerate_protein2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCCGGCTTCCTATGGCCAGCTCTCTGGAACATGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Exonerate_coding2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCCGGCTTCCTATGGCCAGCTCTCTGGAACATGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from GeneWise TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCCGGCTTCCTATGGCCAGCTCTCTGGAACATGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAG-CTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGCTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTC-TCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAG-CTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGCTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTC-TCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGCTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGC-TGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGCTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTC-TCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGC-TGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGCTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTC-TCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGCTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGCTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGCTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGC-GCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGG-ACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from CESAR GATGAGCTGAGC-GCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGG-ACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Spaln_aa2Genome GATGAGCTGAGC-GCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCcGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGA-CAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Spaln_nt2Genome GATGAGCTGAGC-GCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGG-ACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Pairagon GATGAGCTGAG-CGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGG-ACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAG-CTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTG-CAAGTGGCAGGAGAAGATGGACTGGCTACAACTTggtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from CESAR ATCTCAGAGAAG-CTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCT-GCAAGTGGCAGGAGAAGATGGACTGGCTACAACTTggtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagatctcagAGAAGC------CTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGC-AAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGC-TGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTG-CAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Pairagon ATCTCAGAGAAG-CTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTG-CAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGCAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGCAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from GeneWise GCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagatctcagagaagCCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGC-AAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttcgaactctctataaacatctcttttgcctttccagttTTGGAGGTGCTTGTGTTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCAGGCACCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGG-TAAGCTCACTGCAgtaagtactgcagtaccccagaggtgaccaaccccattactgccctattt Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttcgaactctctataaacatctcttttgcctttccagttTTGGAGGTGCTTGTGTTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCAGGCACCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTG-GTAAGCTCACTGCAgtaagtactgcagtaccccagaggtgaccaaccccattactgccctattt Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttcgaactctctataaacatctcttttgcctttccagTTTTGGAGGTGCTTGTGTTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCAGGCACCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATcCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGT-AAGCTCACTGCAgtaagtactgcagtaccccagaggtgaccaaccccattactgccctattt Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTC-AGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttcgaactctctataaacatctcttttgcctttccagTTTTGGAGGTGCTTGTGTTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCAGGCACCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGG-TAAGCTCACTGCAgtaagtactgcagtaccccagaggtgaccaaccccattactgccctattt Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCT-TTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttcgaactctctataaacatctcttttgcctttccagTTTTGGAGGTGCTTGTGTTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCAGGCACCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGG-TAAGCTCACTGCAgtaagtactgcagtaccccagaggtgaccaaccccattactgccctattt Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGC ttgcactctaaccttcgaactctctataaacatctcttttgcctttccagTTTTGGAGGTGCTTGTGTTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCAGGCACCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGTAAGCTCACTGCAgtaagtactgcagtaccccagaggtgaccaaccccattactgccctattt Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGC ttgcactctaaccttcgaactctctataaacatctcttttgcctttccagTTTTGGAGGTGCTTGTGTTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCAGGCACCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGTAAGCTCACTGCAgtaagtactgcagtaccccagaggtgaccaaccccattactgccctattt Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttcgaactctctataaacatctcttttgcctttccagTTTTGGAGGTGCTTGTGTTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCAGGCACCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGTAAGCTCACTGCAgtaagtactgcagtaccccagaggtgaccaaccccattactgccctattt #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGG-CCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTGCTCCTT-TCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACaggtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCC-CGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTGCTCCT-TTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACaggtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGG-CCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGcCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTGCTCCTTTCCCATGCCC-CAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGT-GGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTGCTCCTT-TCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGG-CCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTGCTCCTT-TCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTGCTCCTTTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTGCTCCTTTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTGCTCCTTTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggctacttgggttggaaaggcatggacctctcgcctgcccaaaccccagaGCACAGGGCACTCGCGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGCAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATG-GCAGGAGCTCCGCCCCATAGTACACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCaggtatgcgtggagaggtcaagggtggtgttgtgtatactgaggggtggctc Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggctacttgggttggaaaggcatggacctctcgcctgcccaaaccccagaGCACAGGGCACTCGCGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGCAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCAT-GGCAGGAGCTCCGCCCCATAGTACACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCaggtatgcgtggagaggtcaagggtggtgttgtgtatactgaggggtggctc Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacctctcgcctgcccaaaccccagAGCACAGGGCACTCGCGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGCAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGGCAGGAGCTCCGCCCCATAGTACACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtatgcgtggagaggtcaagggtggtgttgtgtatactgaggggtggctc Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacctctcgcctgcccaaaccccagAGCACAGGGCACTCGCGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGCAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATG-GCAGGAGCTCCGCCCCATAGTACACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtatgcgtggagaggtcaagggtggtgttgtgtatactgaggggtggctc Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacctctcgcctgcccaaaccccagAGCACAGGGCACTCGCGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGCAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATG-GCAGGAGCTCCGCCCCATAGTACACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtatgcgtggagaggtcaagggtggtgttgtgtatactgaggggtggctc Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCAC--GTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacctctcgcctgcccaaaccccagAGCACAGGGCACTCGCGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGCAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGG---CAGGAGCTCCGCCCCATAGTACACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtatgcgtggagaggtcaagggtggtgttgtgtatactgaggggtggctc Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCAC--GTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacctctcgcctgcccaaaccccagAGCACAGGGCACTCGCGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGCAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGG---CAGGAGCTCCGCCCCATAGTACACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtatgcgtggagaggtcaagggtggtgttgtgtatactgaggggtggctc Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacctctcgcctgcccaaaccccagAGCACAGGGCACTCGCGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGCAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGG-CAGGAGCTCCGCCCCATAGTACACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtatgcgtggagaggtcaagggtggtgttgtgtatactgaggggtggctc #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGAC-AACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTGACCAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTC-CATCTTCCCGCACCTCTACTTGgtaccggtcctttattagctgtgcttttattttcagGGCTCTGAGTGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGAC-AACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTGACCAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCT-CCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGAC-AACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTGACcAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCC-ATCTTCCCGCACCTCTACTTGgtaccggtcctttattagctgtgcttttattttcagGGCTCTGAGTGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGA-CAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTGACCAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTC-CATCTTCCCGCACCTCTACTTGgtaccggtcctttattagctgtgcttttattttcagGGCTCTGAGTGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGA-CAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTGACCAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTC-CATCTTCCCGCACCTCTACTTGgtaccggtcctttattagctgtgcttttattttcagGGCTCTGAGTGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGAC-AACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCC--TCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTGACCAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCC---ATCTTCCCGCACCTCTACTTGgtaccggtcctttattagctgtgcttttattttcagGGCTCTGAGTGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGAC-AACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCC--TCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTGACCAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCC---ATCTTCCCGCACCTCTACTTGgtaccggtcctttattagctgtgcttttattttcagGGCTCTGAGTGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTGACCAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCCATCTTCCCGCACCTCTACTTGgtaccggtcctttattagctgtgcttttattttcagGGCTCTGAGTGGAA #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagaGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCA-GCCTGTCTCTATCCAGACCATGtggtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from CESAR gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagaGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCT-TCAGCCTGTCTCTATCCAGACCATGtggtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGcACATCTGGTGGTCAAAGCCGAATCTTCAG-CCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCA-GCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Pairagon GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTC-AGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGAT-GGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATCGGTTACCAACGTTGCATGATGGCACAGTACAACAGAC-TGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from CESAR GAAGCAGCAGAT-GGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATCGGTTACCAACGTTGCATGATGGCACAGTACAACAGA-CTGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacaggaagCAGCAGATC---GGTTACCAACGTTGCATGATGGCACAGTACAACAGACT-GACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Spaln_nt2Genome GAAGCAGCAGAT-GGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATCGGTTACCAACGTTGCATGATGGCACAGTACAACAGAC-TGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Pairagon GAAGCAGCAGAT-GGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATCGGTTACCAACGTTGCATGATGGCACAGTACAACAGAC-TGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Exonerate_protein2genome GAAGCAGCAGAT-GGTTACCAACGCTGTATGATGGCACAGTACAACAGA--CATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATCGGTTACCAACGTTGCATGATGGCACAGTACAACAGACT---GACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Exonerate_coding2genome GAAGCAGCAGAT-GGTTACCAACGCTGTATGATGGCACAGTACAACAGA--CATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATCGGTTACCAACGTTGCATGATGGCACAGTACAACAGACT---GACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacaggaagCAGCAGATC---GGTTACCAACGTTGCATGATGGCACAGTACAACAGACT-GACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ggatcgtggccaagtaatactaagttgtaccaatctgaccctacttgcagacAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGT-CCAAAAAGCATTAGACCTGGACTCCAGTTGTAAGgtgaattgctgttggcctatgcacacatccctgttgacttcccctagggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ggatcgtggccaagtaatactaagttgtaccaatctgaccctacttgcagacAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTG-TCCAAAAAGCATTAGACCTGGACTCCAGTTGTAAGgtgaattgctgttggcctatgcacacatccctgttgacttcccctagggt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ggatcgtggccaagtaatactaagttgtaccaatctgaccctacttgcagACAAGGGTTATACCCGGCAAGCAGCTGCTcCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTC-CAAAAAGCATTAGACCTGGACTCCAGTTGTAAGgtgaattgctgttggcctatgcacacatccctgttgacttcccctagggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ggatcgtggccaagtaatactaagttgtaccaatctgaccctacttgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGT-CCAAAAAGCATTAGACCTGGACTCCAGTTGTAAGgtgaattgctgttggcctatgcacacatccctgttgacttcccctagggt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ggatcgtggccaagtaatactaagttgtaccaatctgaccctacttgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGT-CCAAAAAGCATTAGACCTGGACTCCAGTTGTAAGgtgaattgctgttggcctatgcacacatccctgttgacttcccctagggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ggatcgtggccaagtaatactaagttgtaccaatctgaccctacttgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTCCAAAAAGCATTAGACCTGGACTCCAGTTGTAAGgtgaattgctgttggcctatgcacacatccctgttgacttcccctagggt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCT---GGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ggatcgtggccaagtaatactaagttgtaccaatctgaccctacttgcagACAAGGGTTATACCCGGCAAGCAGCTGCT--CCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTC-CAAAAAGCATTAGACCTGGACTCCAGTTGTAAGgtgaattgctgttggcctatgcacacatccctgttgacttcccctagggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ggatcgtggccaagtaatactaagttgtaccaatctgaccctacttgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTCCAAAAAGCATTAGACCTGGACTCCAGTTGTAAGgtgaattgctgttggcctatgcacacatccctgttgacttcccctagggt #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtggtacactgagcctatcttttttctctgtgttgattttccagctGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTG-CAATCCAGCCATCTTCACTTCTGGGgtgcgtaacatctgcacttggttcagtagactggaatgagcccatgtggg Alignment from CESAR ctGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtggtacactgagcctatcttttttctctgtgttgattttccagctGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGT-GCAATCCAGCCATCTTCACTTCTGGGgtgcgtaacatctgcacttggttcagtagactggaatgagcccatgtggg Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtggtacactgagcctatcttttttctctgtgttgattttccagCTGGCAAGAAGACAACAGATcGAGGAGCTAGAGGAGATGTTGGAGAGTGC-AATCCAGCCATCTTCACTTCTGGGgtgcgtaacatctgcacttggttcagtagactggaatgagcccatgtggg Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtggtacactgagcctatcttttttctctgtgttgattttccagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGT-GCAATCCAGCCATCTTCACTTCTGGGgtgcgtaacatctgcacttggttcagtagactggaatgagcccatgtggg Alignment from Pairagon CTGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtggtacactgagcctatcttttttctctgtgttgattttccagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGT-GCAATCCAGCCATCTTCACTTCTGGGgtgcgtaacatctgcacttggttcagtagactggaatgagcccatgtggg Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtggtacactgagcctatcttttttctctgtgttgattttccagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGCAATCCAGCCATCTTCACTTCTGGGgtgcgtaacatctgcacttggttcagtagactggaatgagcccatgtggg Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtggtacactgagcctatcttttttctctgtgttgattttccagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGCAATCCAGCCATCTTCACTTCTGGGgtgcgtaacatctgcacttggttcagtagactggaatgagcccatgtggg Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtggtacactgagcctatcttttttctctgtgttgattttccagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGCAATCCAGCCATCTTCACTTCTGGGgtgcgtaacatctgcacttggttcagtagactggaatgagcccatgtggg #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCA-TGAACTTACCCTTATGGCCaggtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from CESAR AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACCGGCTCTGCACGCAGCCCGACAGTGC-ATGAACTTACCCTTATGGCCaggtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Spaln_aa2Genome AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAcAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAT-GAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Spaln_nt2Genome AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCA-TGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Pairagon AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCA-TGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCATGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCATGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCATGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAAC-CGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacccatattcccagggcccagaagctccaaagtgggctctctccacagAATCTGAAACAGCAAAGGAACCCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCAGCCCTGC-TCTTGCCCCCAACAACCTTggtgagtttgcattagcactatgcctaggggataagttctgctgggtctgg Alignment from CESAR AATCTGAAACAGCAGAGGAAC-CGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacccatattcccagggcccagaagctccaaagtgggctctctccacagAATCTGAAACAGCAAAGGAACCCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCAGCCC-TGCTCTTGCCCCCAACAACCTTggtgagtttgcattagcactatgcctaggggataagttctgctgggtctgg Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAAC-CGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTT---G acacccatattcccagggcccagaagctccaaagtgggctctctccacagAATCTGAAACAGCAAAGGAACcCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCAGCCCTGCTCTTGCCCCCAACAACCTTGGTGAgtttgcattagcactatgcctaggggataagttctgctgggtctgg Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACC-GTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacccatattcccagggcccagaagctccaaagtgggctctctccacagAATCTGAAACAGCAAAGGAACCCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCAGCCCTG-CTCTTGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggataagttctgctgggtctgg Alignment from Pairagon AATCTGAAACAGCAGAGGAA-CCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacccatattcccagggcccagaagctccaaagtgggctctctccacagAATCTGAAACAGCAAAGGAACCCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCAGCCCTG-CTCTTGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggataagttctgctgggtctgg Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacccatattcccagggcccagaagctccaaagtgggctctctccacagAATCTGAAACAGCAAAGGAACCCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCAGCCCTGCTCTTGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggataagttctgctgggtctgg Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacccatattcccagggcccagaagctccaaagtgggctctctccacagAATCTGAAACAGCAAAGGAACCCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCAGCCCTGCTCTTGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggataagttctgctgggtctgg Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacccatattcccagggcccagaagctccaaagtgggctctctccacagAATCTGAAACAGCAAAGGAACCCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCAGCCCTGCTCTTGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggataagttctgctgggtctgg #### Sufu_ID9897_5 --> 0 - 2 Original Alignment ATTGTTGGTGTCTGCACTGAGGAGTTA-CATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGGAGTTACCATTCAGCACAACAGTGGAATGGACAGGGCATCC-GGAACTACTACGGGCAGTACCCatgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from CESAR ATTGTTGGTGTCTGCACTGAGGAGTTA-CATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGGAGTTACCATTCAGCACAACAGTGGAATGGACAGGGCATC-CGGAACTACTACGGGCAGTACCCatgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Spaln_aa2Genome ATTGTTGGTGTCTGCACTGAGGAGTTA-CATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGGAGTTAcCATTCAGCACAACAGTGGAATGGACAGGGCATCCG-GAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Spaln_nt2Genome ATTGTTGGTGTCTGCACTGAGGAGTTA-CATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGGAGTTACCATTCAGCACAACAGTGGAATGGACAGGGCATCC-GGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Pairagon ATTGTTGGTGTCTGCACTGAGGAGTTA-CATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGGAGTTACCATTCAGCACAACAGTGGAATGGACAGGGCATCC-GGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Exonerate_protein2genome ATTGTTGGTGTCTGCACTGAGGAGTTA-CATTCAGCCCAACAGTGGAACGGGCAGGGCATC--CTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGGAGTTACCATTCAGCACAACAGTGGAATGGACAGGGCATCCG---GAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Exonerate_coding2genome ATTGTTGGTGTCTGCACTGAGGAGTTA-CATTCAGCCCAACAGTGGAACGGGCAGGGCATC--CTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGGAGTTACCATTCAGCACAACAGTGGAATGGACAGGGCATCCG---GAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from GeneWise ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGGAGTTACCATTCAGCACAACAGTGGAATGGACAGGGCATCCGGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCG-CTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACCTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGT-AGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCG-CTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACCTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGG-TAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACCTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGC-TCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACCTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTAG-CTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCG-CTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACCTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGG-TAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACCTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACCTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACCTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGAC-TTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagctCTCATGTTTCTCCTGGGCATCCTTGACCTTCCTCTTTGTCAGCCATGCTTATCACAGCATCC-GACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGAC-TTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagctCTCATGTTTCTCCTGGGCATCCTTGACCTTCCTCTTTGTCAGCCATGCTTATCACAGCATC-CGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTGACCTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTG-GACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTGACCTTCCTCTTTGTCAGCCATGCTTATCACAGCATCC-GACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGA-CTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTGACCTTCCTCTTTGTCAGCCATGCTTATCACAGCATCC-GACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTGACCTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTGACCTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTGACCTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTG-CACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGG-CAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTG-CACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCCACTCTGTGGACCTCCAGAGCGAGAATCCCTGG-GCAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGCAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTG-CACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGG-CAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTG-CACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGG-CAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTG-CACTCCGTGGACCTCCAGAGCGAGAACCCCTGG--GACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGC---AACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTG-CACTCCGTGGACCTCCAGAGCGAGAACCCCTGG--GACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGC---AACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGCAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcagttggctcattcccttccctctattataggcTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACAT-CCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGaggtgagtctggccttgtcttagtcactcccatgttccccttctcccacccc Alignment from CESAR gcTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcagttggctcattcccttccctctattataggcTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACA-TCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGaggtgagtctggccttgtcttagtcactcccatgttccccttccctatcctc Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttctcccacccc Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTA-CATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACA-TCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttctcccacccc Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTA-CATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACA-TCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttctcccacccc Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACA--TTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATC---CCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttctcccacccc Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTA---CATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTG--TATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATC-CCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttctcccacccc Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttctcccacccc #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCA-CTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtggcactgacagcccagcttgttctctttctcttgttttactcttcagtcCCCCAGGGCCTCCTGCCCTCTTTTCCTCCAGGCATGTTCCCACCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCC-ACCTCCCCCAAGTTCTGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAggtgagtcctgtgcatgccagggtagctggaggttgacagctagatctgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCA-CTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtggcactgacagcccagcttgttctctttctcttgttttactcttcagtcCCCCAGGGCCTCCTGCCCTCTTTTCCTCCAGGCATGTTCCCACCTATGGCCCCCAATGGGTCCCTTTCCACCTG-TCCACCTCCCCCAAGTTCTGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAggtgagtcctgtgcatgccagggtagctggaggttgacagctagatctgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggcactgacagcccagcttgttctctttctcttgttttactcttcagTCCCCCAGGGCCTCCTGCCCTCTTTTCCTCCAGGCATGTTCCCACCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCACCTCCCCCAAGTTCTGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtgagtcctgtgcatgccagggtagctggaggttgacagctagatctgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCA-CTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggcactgacagcccagcttgttctctttctcttgttttactcttcagTCCCCCAGGGCCTCCTGCCCTCTTTTCCTCCAGGCATGTTCCCACCTATGGCCCCCAATGGGTCCCTTTCCACCTGT-CCACCTCCCCCAAGTTCTGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtgagtcctgtgcatgccagggtagctggaggttgacagctagatctgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCA-CTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggcactgacagcccagcttgttctctttctcttgttttactcttcagTCCCCCAGGGCCTCCTGCCCTCTTTTCCTCCAGGCATGTTCCCACCTATGGCCCCCAATGGGTCCCTTTCCACCTGT-CCACCTCCCCCAAGTTCTGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtgagtcctgtgcatgccagggtagctggaggttgacagctagatctgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggcactgacagcccagcttgttctctttctcttgttttactcttcagTCCCCCAGGGCCTCCTGCCCTCTTTTCCTCCAGGCATGTTCCCACCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCACCTCCCCCAAGTTCTGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtgagtcctgtgcatgccagggtagctggaggttgacagctagatctgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggcactgacagcccagcttgttctctttctcttgttttactcttcagTCCCCCAGGGCCTCCTGCCCTCTTTTCCTCCAGGCATGTTCCCACCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCACCTCCCCCAAGTTCTGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtgagtcctgtgcatgccagggtagctggaggttgacagctagatctgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggcactgacagcccagcttgttctctttctcttgttttactcttcagTCCCCCAGGGCCTCCTGCCCTCTTTTCCTCCAGGCATGTTCCCACCTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCACCTCCCCCAAGTTCTGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtgagtcctgtgcatgccagggtagctggaggttgacagctagatctgga #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCC-ACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg aggagattgatccattctcaatttgcattttctaatctgttgtgttccagctGTTTCTCGGCCTAGTGGAGCAGCACACCACCACAGCTGCTGGCACCAGTCCTTCTG-CCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTggtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCC-ACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg aggagattgatccattctcaatttgcattttctaatctgttgtgttccagctGTTTCTCGGCCTAGTGGAGCAGCACACCACCACAGCTGCTGGCACCAGTCCTTCTG-CCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTggtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCACACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGC-CACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCACACCACCACAGCTGCTGGCACCAGTCCTTCTG-CCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGC-CACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCACACCACCACAGCTGCTGGCACCAGTCCTTCTG-CCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCACACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGC---CACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCA--GCACACCACCACAGCTGCTGGCACCAGTCCTTCTGC-CCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCACACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTG-CGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagccTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAA-CAACCAGTACCTCACTGTGCTGGCTTCCCTGgggcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTG-CGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagccTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCCGCAACATACACACACTACTGGATGCTGCCATGCTTCAA-ACAACCAGTACCTCACTGTGCTGGCTTCCCTGgggcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTG-CGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGcCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAAC-AACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTG-CGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCCGCAACATACACACACTACTGGATGCTGCCATGCTTC-AAACAACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTG-CGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAA-CAACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTG-CGCAACATACACACACTACTGGATGCTGCCATGCTTCAA--ATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAAC---AACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCG---CAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTG--CCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAAC-AACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGT-CTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGG-- gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAACAACCAGTACCTCACTGTGCTGGCTTCCCTGGGGCAAgtatgtcatattcaatagcactccagaaaggtcttatgtccttttg #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACT-GAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcaggCCCCCAAGGCCAGCTACCTCAGTGAACCACACTCGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTT-CAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACT-GAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcaggCCCCCAAGGCCAGCTACCTCAGTGAACCACACTCGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCA-GTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACT-GAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTcGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTC-AGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACT-GAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTCGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTT-CAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACT-GAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTCGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTT-CAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTCGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTCGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTCGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctaggCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACCAACCTATACCGGCCAGAGCAGGGATACTGTC-CTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctaggCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACCAACCTATACCGGCCAGAGCAGGGAT-ACTGTCCTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC-----TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACcAACCTATACCGGCCAGAGCAGGGATACTGTccTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATA-----CTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACCAACCTATACCGGCCAGAGCAGGGATACTGTCCTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTA-CACCCTGTACCGGCCAGAGCAGGGATA-----CTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACCAACCTATACCGGCCAGAGCAGGGATACTGTCCTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC-----TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACCAACCTATACCGGCCAGAGCAGGGATACTGTCCTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC-----TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACCAACCTATACCGGCCAGAGCAGGGATACTGTCCTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACCAACCTATACCGGCCAGAGCAGGGATACTGTCCTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACC-ATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg atagctcctagccacccaaccttctataatgctcttctgtccctttccagGAACTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGGGACTTGCACCGTCAGTTTC-TCTGCATGAGATGTTTGTGTCACCTCAGGGACATgggtaaggggtcaggagtctacccaggccggagtctccattgttcaaggatg Alignment from CESAR GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACC-ATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg atagctcctagccacccaaccttctataatgctcttctgtccctttccagGAACTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGGGACTTGCACCGTCAGT-TTCTCTGCATGAGATGTTTGTGTCACCTCAGGGACATgggtaaggggtcaggagtctacccaggccggagtctccattgttcaaggatg Alignment from Spaln_aa2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagccacccaaccttctataatgctcttctgtccctttccagGAACTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGGGACTTGCACCGTCAGTTTCTCTGCATGAGATGTTTGTGTCACCTCAGGGACATGGgtaaggggtcaggagtctacccaggccggagtctccattgttcaaggatg Alignment from Spaln_nt2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGA-CCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagccacccaaccttctataatgctcttctgtccctttccagGAACTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGGGACTTGCACCGTCAG-TTTCTCTGCATGAGATGTTTGTGTCACCTCAGGGACATGGgtaaggggtcaggagtctacccaggccggagtctccattgttcaaggatg Alignment from Pairagon GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGA-CCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagccacccaaccttctataatgctcttctgtccctttccagGAACTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGGGACTTGCACCGTCAGTTT-CTCTGCATGAGATGTTTGTGTCACCTCAGGGACATGGgtaaggggtcaggagtctacccaggccggagtctccattgttcaaggatg Alignment from Exonerate_protein2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagccacccaaccttctataatgctcttctgtccctttccagGAACTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGGGACTTGCACCGTCAGTTTCTCTGCATGAGATGTTTGTGTCACCTCAGGGACATGGgtaaggggtcaggagtctacccaggccggagtctccattgttcaaggatg Alignment from Exonerate_coding2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagccacccaaccttctataatgctcttctgtccctttccagGAACTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGGGACTTGCACCGTCAGTTTCTCTGCATGAGATGTTTGTGTCACCTCAGGGACATGGgtaaggggtcaggagtctacccaggccggagtctccattgttcaaggatg Alignment from GeneWise GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagccacccaaccttctataatgctcttctgtccctttccagGAACTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCCATTGGCAGGGACTTGCACCGTCAGTTTCTCTGCATGAGATGTTTGTGTCACCTCAGGGACATGGgtaaggggtcaggagtctacccaggccggagtctccattgttcaaggatg #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGT-TCAGAAGAACAACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATG-TTCAGAAGAACAACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTTCAGAAGAACAACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCC-GGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGT-TCAGAAGAACAACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTG-CCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGT-TCAGAAGAACAACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATG--TGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTT---CAGAAGAACAACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCC-CGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATG--TGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTT---CAGAAGAACAACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGT-GCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTT-CAGAAGAACAACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCT-GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATTG-GTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTcgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from CESAR TTTGTCCCTTCT-GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATT-GGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTcgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATTGGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Spaln_nt2Genome TTTGTCCCTTCT-GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATTG-GTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Pairagon TTTGTCCCTTCT-GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATTG-GTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATTGGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATTGGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from GeneWise --------------------------------------------------TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC GAAGGCCTGCCAGGTCAGGCTATTGTCTCTGCCTTGTCCTTTATTTAAAGTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATTGGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTG-GCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGCGCTTTGGCTACTGTCCCTATCCTACTGCTGG-CACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTG-GCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGCGCTTTGGCTACTGTCCCTATCCTACTGC-TGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGCGCTTTGGCTACTGTCCCTATCCTACTGCTGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTG-GCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGCGCTTTGGCTACTGTCCCTATCCTACTGCT-GGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAG---AGCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTG-GCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGCGCTTTGGCTACTGTCCCTATCCTACTGCT-GGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAG---AGCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGCGCTTTGGCTACTGTCCCTATCCTACTGCTGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGCGCTTTGGCTACTGTCCCTATCCTACTGCTGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGCGCTTTGGCTACTGTCCCTATCCTACTGCTGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATC-TTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCTTGTCTGAGCTCATCCTTCCTCCTGGGTCTC------TACCTTGTGT-CCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATC-TTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCTTGTCTGAGCTCATCCTTCCTCCTGGGTCTC------TACCTTGTG-TCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCTTGTCTGAGCTCATCCTTCCTCCTGGGTCTCTACCTTGTGTC------CTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATC-TTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCTTGTCTGAGCTCATCCTTCCTCCTGGGTCT------CTACCTTGTG-TCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCAT-CTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCTTGTCTGAGCTCATCCTTCCTCCTGGGTCT------CTACCTTGTG-TCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCTTGTCTGAGCTCATCCTTCCTCCTGGGTCTCTACCTTGTGTC------CTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCTTGTCTGAGCTCATCCTTCCTCCTGGGTCTCTACCTTGTGTC------CTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCTTGTCTGAGCTCATCCTTCCTCCTGGGTCTCTACCTTGTGTC------CTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTT-GGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTCGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCT-TGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGctgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from CESAR ATCTGGCAGACCTTCTTT-GGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTCGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTC-TTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGctgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTCGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTT-GGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTCGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCT-TGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Pairagon ATCTGGCAGACCTTCTTT-GGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTCGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCT-TGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTGTGAGTCCTACAACCTTTCCTATGCAGCCAGGGCACCTGACCAACTGTGT Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTCGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTCGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTCGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTC-ATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAG-GCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from CESAR GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTC-ATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACA-GGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Spaln_aa2Genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTC-ATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCcATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGG-CAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Spaln_nt2Genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTC-ATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAG-GCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Pairagon GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCT-CATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAG-GCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Exonerate_protein2genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTC-ATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACT--GTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGG---CAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Exonerate_coding2genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTC-ATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACT--GTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGG---CAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from GeneWise GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGC-CTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGG-CAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA atgtcttcctcagcttccacttaagctctcctcgttcctctcttccccagcTTTCACTGTCATGTCTTCTCATATCTGGAGCAGCGAGGAAGCCCGGTTCAGGACCTCGCAGCAGT-GCAGCAGCAAAGCCAGGAGCTTCAGGAAgtacaggcccatgtgaactgaactctaatagctccctcaaggatttcctg Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA atgtcttcctcagcttccacttaagctctcctcgttcctctcttccccagcTTTCACTGTCATGTCTTCTCATATCTGGAGCAGCGAGGAAGCCCGGTTCAGGACCTCGCAGC-AGTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtacaggcccatgtgaactgaactctaatagctccctcaaggatttcctg Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA atgtcttcctcagcttccacttaagctctcctcgttcctctcttccccagCTTTCACTGTCATGTCTTCTCATATCTGGAGCAGCGAGGAAGCCCGGTTCAGGACCTCGCAGCAGTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtacaggcccatgtgaactgaactctaatagctccctcaaggatttcctg Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA atgtcttcctcagcttccacttaagctctcctcgttcctctcttccccagCTTTCACTGTCATGTCTTCTCATATCTGGAGCAGCGAGGAAGCCCGGTTCAGGACCTCGCAGCAG-TGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtacaggcccatgtgaactgaactctaatagctccctcaaggatttcctg Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTGGAGCAG-GAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA atgtcttcctcagcttccacttaagctctcctcgttcctctcttccccagCTTTCACTGTCATGTCTTCTCATATCTGGAGCAGCGAGGAAGCCCGGTTCAGGACCTCGCAGCAG-TGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtacaggcccatgtgaactgaactctaatagctccctcaaggatttcctg Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA atgtcttcctcagcttccacttaagctctcctcgttcctctcttccccagCTTTCACTGTCATGTCTTCTCATATCTGGAGCAGCGAGGAAGCCCGGTTCAGGACCTCGCAGCAGTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtacaggcccatgtgaactgaactctaatagctccctcaaggatttcctg Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA atgtcttcctcagcttccacttaagctctcctcgttcctctcttccccagCTTTCACTGTCATGTCTTCTCATATCTGGAGCAGCGAGGAAGCCCGGTTCAGGACCTCGCAGCAGTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtacaggcccatgtgaactgaactctaatagctccctcaaggatttcctg Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA atgtcttcctcagcttccacttaagctctcctcgttcctctcttccccagCTTTCACTGTCATGTCTTCTCATATCTGGAGCAGCGAGGAAGCCCGGTTCAGGACCTCGCAGCAGTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtacaggcccatgtgaactgaactctaatagctccctcaaggatttcctg #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAAGGACCCTTCTCTGAGCACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATT-TGACCTGAAAGTCaagtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAAGGACCCTTCTCTGAGCACAACACCCCTGCTTCCAGGCACCCGGGGGCCACAT-TTGACCTGAAAGTCaagtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAAGGACCCTTCTCTGAGcACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTT-GACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAAGGACCCTTCTCTGAGCACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATT-TGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAAGGACCCTTCTCTGAGCACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTT-GACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAAGGACCCTTCTCTGAGCACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTTGACCTGAAAGTCAAGtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAAGGACCCTTCTCTGAGCACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTTGACCTGAAAGTCAAGtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAAGGACCCTTCTCTGAGCACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCC-GTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTCGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATG-CCGGCGCTGCGAGGAACTGGAAAAGACGTTTagtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from CESAR CTCAACGAATCC-GTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTCGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATG-CCGGCGCTGCGAGGAACTGGAAAAGACGTTTagtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Spaln_aa2Genome --------GAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTCGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGC-CGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Spaln_nt2Genome CTCAACGAATC-CGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTCGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATG-CCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Pairagon CTCAACGAATC-CGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTCGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATG-CCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTCGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTCGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTCGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGC-ACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagggTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCCACCTCGGAGCCAGCCCTGGATGCAGTCTCAT-TTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGC-ACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagggTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCCACCTCGGAGCCAGCCCTGGATGCAGTCTCAT-TTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCCACCTCGGAGCCAGCCCTGGATGCAGTCTCATTTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTG-CACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCCACCTCGGAGCCAGCCCTGGATGCAGTCTCAT-TTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTG-CACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCCACCTCGGAGCCAGCCCTGGATGCAGTCTCAT-TTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCCACCTCGGAGCCAGCCCTGGATGCAGTCTCATTTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCCACCTCGGAGCCAGCCCTGGATGCAGTCTCATTTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCCACCTCGGAGCCAGCCCTGGATGCAGTCTCATTTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tcttcatgagagctgtgtgctgtcactcaaacatttatttcaatcctcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAACGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATC-TCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtgagaaaactcctcttttccagtttttgtaatttgaatgattgcttggt Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tcttcatgagagctgtgtgctgtcactcaaacatttatttcaatcctcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAACGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATC-TCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtgagaaaactcctcttttccagtttttgtaatttgaatgattgcttggt Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcttcatgagagctgtgtgctgtcactcaaacatttatttcaatcctcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAcGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCT-CATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtgagaaaactcctcttttccagtttttgtaatttgaatgattgcttggt Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcttcatgagagctgtgtgctgtcactcaaacatttatttcaatcctcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAACGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATC-TCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtgagaaaactcctcttttccagtttttgtaatttgaatgattgcttggt Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcttcatgagagctgtgtgctgtcactcaaacatttatttcaatcctcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAACGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATC-TCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtgagaaaactcctcttttccagtttttgtaatttgaatgattgcttggt Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCAT--CTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcttcatgagagctgtgtgctgtcactcaaacatttatttcaatcctcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAACGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCT---CATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtgagaaaactcctcttttccagtttttgtaatttgaatgattgcttggt Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCAT--CTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcttcatgagagctgtgtgctgtcactcaaacatttatttcaatcctcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAACGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCT---CATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtgagaaaactcctcttttccagtttttgtaatttgaatgattgcttggt Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAA-GTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcttcatgagagctgtgtgctgtcactcaaacatttatttcaatcctcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAACGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCT-CATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtgagaaaactcctcttttccagtttttgtaatttgaatgattgcttggt #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGG-ATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagcgTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTCATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGC-CCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGG-ATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagcgTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTCATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGG-CCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGG-ATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTcATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCC-CACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGG-ATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTCATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGC-CCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGG-GATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTCATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCC-CACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGG-ATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGG--CTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTCATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCC---CACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGG-ATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGG--CTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTCATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCC---CACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTCATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg gcttaatcgaactggagggctttgtaccaaatgtcccccctcttccccaggtCTCGACACCATCCCCACTGCCACAGGGAGACAGCTGCTGGTGTCTGGGTGGCTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGATCTCA-CATGGCTCTGGCTTGGTCTTTGCCCTGCggtgagtgggtcttggaggaaggaggtcaatgtgcctgctgggagccttga Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg gcttaatcgaactggagggctttgtaccaaatgtcccccctcttccccaggtCTCGACACCATCCCCACTGCCACAGGGAGACAGCTGCTGGTGTCTGGGTGGCTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGATCTC-ACATGGCTCTGGCTTGGTCTTTGCCCTGCggtgagtgggtcttggaggaaggaggtcaatgtgcctgctgggagccttga Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gcttaatcgaactggagggctttgtaccaaatgtcccccctcttccccagGTCTCGACACCATCCCCACTGCCACAGGGAGACAGCTGCTGGTGTCTGGGTGGcTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGATCTCAC-ATGGCTCTGGCTTGGTCTTTGCCCTGCGgtgagtgggtcttggaggaaggaggtcaatgtgcctgctgggagccttga Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gcttaatcgaactggagggctttgtaccaaatgtcccccctcttccccagGTCTCGACACCATCCCCACTGCCACAGGGAGACAGCTGCTGGTGTCTGGGTGGCTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGATCTCA-CATGGCTCTGGCTTGGTCTTTGCCCTGCGgtgagtgggtcttggaggaaggaggtcaatgtgcctgctgggagccttga Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG gcttaatcgaactggagggctttgtaccaaatgtcccccctcttccccagGTCTCGACACCATCCCCACTGCCACAGGGAGACAGCTGCTGGTGTCTGGGTGGCTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGATCTCA-CATGGCTCTGGCTTGGTCTTTGCCCTGCGgtgagtgggtcttggaggaaggaggtcaatgtgcctgctgggagccttga Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTC--ATCATGGCTCTGGCATGGTCTTTGCCCTGTG gcttaatcgaactggagggctttgtaccaaatgtcccccctcttccccagGTCTCGACACCATCCCCACTGCCACAGGGAGACAGCTGCTGGTGTCTGGGTGGCTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGATCTCAC---ATGGCTCTGGCTTGGTCTTTGCCCTGCGgtgagtgggtcttggaggaaggaggtcaatgtgcctgctgggagccttga Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTC--ATCATGGCTCTGGCATGGTCTTTGCCCTGTG gcttaatcgaactggagggctttgtaccaaatgtcccccctcttccccagGTCTCGACACCATCCCCACTGCCACAGGGAGACAGCTGCTGGTGTCTGGGTGGCTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGATCTCAC---ATGGCTCTGGCTTGGTCTTTGCCCTGCGgtgagtgggtcttggaggaaggaggtcaatgtgcctgctgggagccttga Alignment from GeneWise ----------------------------------------------------CTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGG-TGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG GCTTAATCGAACTGGAGGGCTTTGTACCAAATGTCCCCCCTCTTCCCCAGGTCTCGACACCATCCCCACTGCCACAGGGAGACAGCTGCTGGTGTCTGGGTGGCTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGATCTCAC-ATGGCTCTGGCTTGGTCTTTGCCCTGCGgtgagtgggtcttggaggaaggaggtcaatgtgcctgctgggagccttga #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagttATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTT-TGAGCCCAGTGTGGCTggtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from CESAR ttATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagttATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCT-TTGAGCCCAGTGTGGCTggtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCcCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTT-GAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTT-CCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTT-TGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Pairagon TTATTGGTTACTACATCTT-CCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTT-TGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGT aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTTGAGCCCAGTGTGgctggtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGT aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTTGAGCCCAGTGTGgctggtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTGGT------------------------------------------------ aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTTGAGCCCAGTGTGGCTGGTAATATGGGTCTCTTAGAGATTATGCTTAATCGAACTGGAGGGCTTTGT #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTT-GGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg cttgaggacatcaactgggttaacccaaacactataattcaatcctgcagGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTTATGCTGGTCTTTCGGAGATCTAGCTTGGATACCATTCACCTACAGCCTGCAGG-CCAGTTCCTTTTGTACCATCCACAACCTCTGGGGTTACCCATGGCCTTGCTCATCTGCCTCCTTAGGggttggtatgagataccctcagtgccccttccccttccatccatgctctgt Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTT-GGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg cttgaggacatcaactgggttaacccaaacactataattcaatcctgcagGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTTATGCTGGTCTTTCGGAGATCTAGCTTGGATACCATTCACCTACAGCCTGCAGG-CCAGTTCCTTTTGTACCATCCACAACCTCTGGGGTTACCCATGGCCTTGCTCATCTGCCTCCTTAGGggttggtatgagataccctcagtgccccttccccttccatccatgctctgt Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTC-TTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG cttgaggacatcaactgggttaacccaaacactataattcaatcctgcagGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTTATGCTGGTCtTTCGGAGATCTAGCTTGGATACCATTCACCTACAGCCTGCAGGC-CAGTTCCTTTTGTACCATCCACAACCTCTGGGGTTACCCATGGCCTTGCTCATCTGCCTCCTTAGGGgttggtatgagataccctcagtgccccttccccttccatccatgctctgt Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTC-TTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG cttgaggacatcaactgggttaacccaaacactataattcaatcctgcagGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTTATGCTGGTCTTTCGGAGATCTAGCTTGGATACCATTCACCTACAGCCTGCAGG-CCAGTTCCTTTTGTACCATCCACAACCTCTGGGGTTACCCATGGCCTTGCTCATCTGCCTCCTTAGGGgttggtatgagataccctcagtgccccttccccttccatccatgctctgt Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTT-GGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG cttgaggacatcaactgggttaacccaaacactataattcaatcctgcagGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTTATGCTGGTCTTTCGGAGATCTAGCTTGGATACCATTCACCTACAGCCTGCAGG-CCAGTTCCTTTTGTACCATCCACAACCTCTGGGGTTACCCATGGCCTTGCTCATCTGCCTCCTTAGGGgttggtatgagataccctcagtgccccttccccttccatccatgctctgt Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTC-TTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAG--GCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG cttgaggacatcaactgggttaacccaaacactataattcaatcctgcagGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTTATGCTGGTCTTTCGGAGATCTAGCTTGGATACCATTCACCTACAGCCTGCAGGC---CAGTTCCTTTTGTACCATCCACAACCTCTGGGGTTACCCATGGCCTTGCTCATCTGCCTCCTTAGGGgttggtatgagataccctcagtgccccttccccttccatccatgctctgt Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTC-TTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAG--GCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG cttgaggacatcaactgggttaacccaaacactataattcaatcctgcagGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTTATGCTGGTCTTTCGGAGATCTAGCTTGGATACCATTCACCTACAGCCTGCAGGC---CAGTTCCTTTTGTACCATCCACAACCTCTGGGGTTACCCATGGCCTTGCTCATCTGCCTCCTTAGGGgttggtatgagataccctcagtgccccttccccttccatccatgctctgt Alignment from GeneWise GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTG-GTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG cttgaggacatcaactgggttaacccaaacactataattcaatcctgcagGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTTATGCTGGTCTTTCGGAGATCTAGCTTGGATACCATTCACCTACAGCCTGCAGGC-CAGTTCCTTTTGTACCATCCACAACCTCTGGGGTTACCCATGGCCTTGCTCATCTGCCTCCTTAGGGgttggtatgagataccctcagtgccccttccccttccatccatgctctgt #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTC-CTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttaggcTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGA-TCCTGGGGGAAACTCAggtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTC-CTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttaggcTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTG-ATCCTGGGGGAAACTCAggtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTC-CTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCcCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGAT-CCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCC-TCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCT-GATCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCT-CCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGA-TCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTC-CTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTG--GCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGAT---CCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCT---CCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGT--CTCCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGAT-CCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGATCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTA-TTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGCTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATT-GCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTA-TTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGCTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCT-ATTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTG-TTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGCTTgTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTGCTGCCCG------CATgcaaggtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTA-TTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGCTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTA-TTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTA-TTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGCTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTA-TTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTA-TTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGCTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTGCTGCCCGCATGCAAGGtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTA-TTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGCTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTGCTGCCCGCATGCAAGGtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTA-TTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGC-- tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGCTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA tcctccccacccctgctaccaacctgttatagttggttggtactttctagcTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTT-CTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacggtagcttaagtgtgtt Alignment from CESAR cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA tcctccccacccctgctaccaacctgttatagttggttggtactttctagcTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGT-TTTCTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacggtagcttaagtgtgtt Alignment from Spaln_aa2Genome CTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA tcctccccacccctgctaccaacctgttatagttggttggtactttctagCTGCTCTGAAGCCcCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTT-TTCTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacggtagcttaagtgtgtt Alignment from Spaln_nt2Genome CTGCTCTGAAGCCC-AGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA tcctccccacccctgctaccaacctgttatagttggttggtactttctagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTT-CTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacggtagcttaagtgtgtt Alignment from Pairagon CTGCTCTGAAG-CCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA tcctccccacccctgctaccaacctgttatagttggttggtactttctagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTT-CTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacggtagcttaagtgtgtt Alignment from Exonerate_protein2genome CTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG--TTTTACTCCAACCTACATACTGCTGAA tcctccccacccctgctaccaacctgttatagttggttggtactttctagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTC---TCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacggtagcttaagtgtgtt Alignment from Exonerate_coding2genome CTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG--TTTTACTCCAACCTACATACTGCTGAA tcctccccacccctgctaccaacctgttatagttggttggtactttctagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTC---TCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacggtagcttaagtgtgtt Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA tcctccccacccctgctaccaacctgttatagttggttggtactttctagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTCTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacggtagcttaagtgtgtt #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTC-CGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagaGGTTCTATAGGGCTCCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCT-AGTGTCTGCCTGTATACTTCGATTTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTaggtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from CESAR aGGTTCTATAGGGCTC-CGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagaGGTTCTATAGGGCTCCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAA-TCTAGTGTCTGCCTGTATACTTCGATTTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTaggtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTC-CGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCcCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAAT-CTAGTGTCTGCCTGTATACTTCGATTTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Spaln_nt2Genome AGGTTCTATAGGGCT-CCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATC-TAGTGTCTGCCTGTATACTTCGATTTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Pairagon AGGTTCTATAGGGCT-CCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATC-TAGTGTCTGCCTGTATACTTCGATTTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTC-CGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTG--ATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAAT---CTAGTGTCTGCCTGTATACTTCGATTTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Exonerate_coding2genome AGGTTCTATAGGGCT---CCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGG--CTCCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAAT-CTAGTGTCTGCCTGTATACTTCGATTTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTAGTGTCTGCCTGTATACTTCGATTTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga #### Tmem180_ID9861_3 --> 1 - 2 Original Alignment gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTG-GCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggccaccttggtgtaaagattacctccttttatatttcttttattttaaggTCAGGAGCAGGGCTCTCCTCAAGGGATGTAGTGCTGACCCGGGTACGGGCTCTGGGCTGGCATGGGCCACTGCTGGCATTGTCCTTCCTTCGCCTTTTGGGTTCCCTGGGCCCCTGCTGGCTTGCAATTCT-ATTGTGCCTGTGCCTCTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACTTGGCGCTCTCATCCCGTGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTTTTTGCCTCCTACGCCTTTTGGAACAAGGAGGATTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAACCGTCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTGGATGGTgggtcagtgactagccttgggtttagagactgatttaatcacccagcccagg Alignment from CESAR gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTG-GCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggccaccttggtgtaaagattacctccttttatatttcttttattttaaggTCAGGAGCAGGGCTCTCCTCAAGGGATGTAGTGCTGACCCGGGTACGGGCTCTGGGCTGGCATGGGCCACTGCTGGCATTGTCCTTCCTTCGCCTTTTGGGTTCCCTGGGCCCCTGCTGGCTTGCAAT-TCTATTGTGCCTGTGCCTCTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACTTGGCGCTCTCATCCCGTGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTTTTTGCCTCCTACGCCTTTTGGAACAAGGAGGATTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAACCGTCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTGGATGGTgggtcagtgactagccttgggtttagagactgatttaatcacccagcccagg Alignment from Spaln_aa2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccaccttggtgtaaagattacctccttttatatttcttttattttaagGTCAGGAGCAGGGCTCTCCTCAAGGGATGTAGTGCTGACCCGGGTACGGGCTCTGGGCTGGCATGGGCCACTGCTGGCATTGTCCTTCCTTCGCCTTTTGGGTTCCCTGGGCCCCTGCTGGCTTGCAATTCTATTGTGCCTGTGCCTCTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACTTGGCGCTCTCATCCCGTGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTTTTTGCCTCCTACGCCTTTTGGAACAAGGAGGATTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAACCGTCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTGGATGGTGGgtcagtgactagccttgggtttagagactgatttaatcacccagcccagg Alignment from Spaln_nt2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTG-GCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccaccttggtgtaaagattacctccttttatatttcttttattttaagGTCAGGAGCAGGGCTCTCCTCAAGGGATGTAGTGCTGACCCGGGTACGGGCTCTGGGCTGGCATGGGCCACTGCTGGCATTGTCCTTCCTTCGCCTTTTGGGTTCCCTGGGCCCCTGCTGGCTTGCAATTC-TATTGTGCCTGTGCCTCTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACTTGGCGCTCTCATCCCGTGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTTTTTGCCTCCTACGCCTTTTGGAACAAGGAGGATTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAACCGTCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTGGATGGTGGgtcagtgactagccttgggtttagagactgatttaatcacccagcccagg Alignment from Pairagon GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCC-TGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccaccttggtgtaaagattacctccttttatatttcttttattttaagGTCAGGAGCAGGGCTCTCCTCAAGGGATGTAGTGCTGACCCGGGTACGGGCTCTGGGCTGGCATGGGCCACTGCTGGCATTGTCCTTCCTTCGCCTTTTGGGTTCCCTGGGCCCCTGCTGGCTTGCAATTC-TATTGTGCCTGTGCCTCTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACTTGGCGCTCTCATCCCGTGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTTTTTGCCTCCTACGCCTTTTGGAACAAGGAGGATTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAACCGTCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTGGATGGTGGgtcagtgactagccttgggtttagagactgatttaatcacccagcccagg Alignment from Exonerate_protein2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTG-GCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTC--TTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccaccttggtgtaaagattacctccttttatatttcttttattttaagGTCAGGAGCAGGGCTCTCCTCAAGGGATGTAGTGCTGACCCGGGTACGGGCTCTGGGCTGGCATGGGCCACTGCTGGCATTGTCCTTCCTTCGCCTTTTGGGTTCCCTGGGCCCCTGCTGGCTTGCAATTCTA---TTGTGCCTGTGCCTCTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACTTGGCGCTCTCATCCCGTGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTTTTTGCCTCCTACGCCTTTTGGAACAAGGAGGATTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAACCGTCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTGGATGGTGGgtcagtgactagccttgggtttagagactgatttaatcacccagcccagg Alignment from Exonerate_coding2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTG-GCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTC--TTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccaccttggtgtaaagattacctccttttatatttcttttattttaagGTCAGGAGCAGGGCTCTCCTCAAGGGATGTAGTGCTGACCCGGGTACGGGCTCTGGGCTGGCATGGGCCACTGCTGGCATTGTCCTTCCTTCGCCTTTTGGGTTCCCTGGGCCCCTGCTGGCTTGCAATTCTA---TTGTGCCTGTGCCTCTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACTTGGCGCTCTCATCCCGTGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTTTTTGCCTCCTACGCCTTTTGGAACAAGGAGGATTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAACCGTCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTGGATGGTGGgtcagtgactagccttgggtttagagactgatttaatcacccagcccagg Alignment from GeneWise GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccaccttggtgtaaagattacctccttttatatttcttttattttaagGTCAGGAGCAGGGCTCTCCTCAAGGGATGTAGTGCTGACCCGGGTACGGGCTCTGGGCTGGCATGGGCCACTGCTGGCATTGTCCTTCCTTCGCCTTTTGGGTTCCCTGGGCCCCTGCTGGCTTGCAATTCTATTGTGCCTGTGCCTCTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACTTGGCGCTCTCATCCCGTGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTTTTTGCCTCCTACGCCTTTTGGAACAAGGAGGATTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAACCGTCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTGGATGGTGGgtcagtgactagccttgggtttagagactgatttaatcacccagcccagg #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCAC-TGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCAC-TGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGcGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTGTT-CGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCAC-TGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACT-GTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Exonerate_coding2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACA-CTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACCTAGTCCATGGTACATTCTGGAAGCACTGGC-ATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTggtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACA-CTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACCTAGTCCATGGTACATTCTGGAAGCACTGG-CATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTggtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACCTAGTCCATGGTACATTCTGGAAGCACTGGCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACA-CTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACCTAGTCCATGGTACATTCTGGAAGCACTGG-CATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCC---AGACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACA-CTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACCTAGTCCATGGTACATTCTGGAAGCACTGG-CATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCC---AGACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACA-CTAGTCCATGGTACATTCTGGAAGCACTGG--CCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACCTAGTCCATGGTACATTCTGGAAGCACTGGCA---TCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACA-CTAGTCCATGGTACATTCTGGAAGCACTGG--CCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACCTAGTCCATGGTACATTCTGGAAGCACTGGCA---TCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTG-ACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACCTAGTCCATGGTACATTCTGGAAGCACTGGCA-TCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca #### Trpt1_ID1983_6 --> 2 - 1 Original Alignment atGGAATCCCTTTCTTCTGC-TCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atagaacgtgactatcatatggtcacacgcctgttcctcctgtccctcagatGGAATTCCT---TTCTGCCTTCGCCAATGGGGTGATTCTGACTCCAGGAA-TGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGcgtaagcatataaaccaccccccaccccggtctgatgctcacgataagtct Alignment from CESAR atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atagaacgtgactatcatatggtcacacgcctgttcctcctgtccctcagatGGAATTCCTTTC--TGCCTTCGCCAATGGGGTGATTCTGACTCCAG-GAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGcgtaagcatataaaccaccccccaccccggtctgatgctcacgataagtct Alignment from Spaln_aa2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcacacgcctgttcctcctgtccctcagATGGAATTCCTTTCT--GCCTTCGCCAATGGGGTGATTCTGACTCCAGG-AATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtaagcatataaaccaccccccaccccggtctgatgctcacgataagtct Alignment from Spaln_nt2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcacacgcctgttcctcctgtccctcagATGGAATTCCTTTCTGC--CTTCGCCAATGGGGTGATTCTGACTCCA-GGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtaagcatataaaccaccccccaccccggtctgatgctcacgataagtct Alignment from Pairagon ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcacacgcctgttcctcctgtccctcagATGGAATTCCTTTCTGC--CTTCGCCAATGGGGTGATTCTGACTCCA-GGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtaagcatataaaccaccccccaccccggtctgatgctcacgataagtct Alignment from Exonerate_protein2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcacacgcctgttcctcctgtccctcagATGGAATTCCT---TTCTGCCTTCGCCAATGGGGTGATTCTGACTCCAGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtaagcatataaaccaccccccaccccggtctgatgctcacgataagtct Alignment from Exonerate_coding2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcacacgcctgttcctcctgtccctcagATGGAATTCCTTTC--TGCCTTCGCCAATGGGGTGATTCTGACTCCAGG-AATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtaagcatataaaccaccccccaccccggtctgatgctcacgataagtct Alignment from GeneWise ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcacacgcctgttcctcctgtccctcagATGGAATTCCTTTC---TGCCTTCGCCAATGGGGTGATTCTGACTCCAGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtaagcatataaaccaccccccaccccggtctgatgctcacgataagtct #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACT-GCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctaatgaagagtaggaacgtccacctttctctatttccagACCAACGCCCGACTCACTCGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCAC-GGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from CESAR ACCAACGCCAGACTCACT-GCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctaatgaagagtaggaacgtccacctttctctatttccagACCAACGCCCGACTCACTCGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCA-CGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTCGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACT-GCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTCGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCAC-GGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Pairagon CAGACCAACGCCAGACTCACT-GCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTCGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCAC-GGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTCGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTCGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTCGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATC-TACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacaggaGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTG-GGCCCAGCTAACCCAGAGAGCAggtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATC-TACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacaggaGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACT-GGGCCCAGCTAACCCAGAGAGCAggtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATC-TACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTG-GGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGAT-CTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTG-GGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct #### Unc93b1_ID211_2 --> 0 - 1 Original Alignment TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTC-AAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTCAAGAATGTGTTGGCAGCCAGCACAGGTG-CACCCTTACTTATGGCATCTACCTGggttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from CESAR TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTC-AAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTCAAGAATGTGTTGGCAGCCAGCACAGGT-GCACCCTTACTTATGGCATCTACCTGggttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Spaln_aa2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTCAAGAATGTGTTGGCAGCCAGCACAGGTGCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Spaln_nt2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGT-CAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTCAAGAATGTGTTGGCAGCCAGCACAGGTG-CACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Pairagon TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGG-TCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTCAAGAATGTGTTGGCAGCCAGCACAGGTG-CACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Exonerate_protein2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTCAAGAATGTGTTGGCAGCCAGCACAGGTGCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Exonerate_coding2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTCAAGAATGTGTTGGCAGCCAGCACAGGTGCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from GeneWise TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTCAAGAATGTGTTGGCAGCCAGCACAGGTGCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATC-CAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCCAGTACCCGAGCAGTCAGCTGGGGGAGATGT-CCTGGAAGAACACAGCCAATGTGAATGCaggtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from CESAR ATCCTCATGATC-CAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCCAGTACCCGAGCAGTCAGCTGGGGGAGATGT-CCTGGAAGAACACAGCCAATGTGAATGCaggtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Spaln_aa2Genome TACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagatcctcatgatcccagTACCCGAGCAGTCAGCTGGGGGAGATGTC-CTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Spaln_nt2Genome ATCCTCATGATCC-AGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCCAGTACCCGAGCAGTCAGCTGGGGGAGATGT-CCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Pairagon ATCCTCATGAT-CCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCCAGTACCCGAGCAGTCAGCTGGGGGAGATGT-CCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAA-CAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACCAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCT-TGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAA-CAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACCAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGC-TTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAA-CAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAAcCAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTT-GGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAA-CAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACCAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCT-TGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAA-CAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACCAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCT-TGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAA-CAACTAGTGCCCAGCTGTGTGACTGTGCAGCGC--TGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACCAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACA-ACTAGTGCCCAGCTGTGT---GACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACCAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTT-GGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGC---TGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACCAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATAC-ATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag aagaatttgcctacaagcaaaactaaattagttctctgctgttcacataggcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACCATCCAACTTGTAGAGCAACTGAGGAACA-GGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTaggtaatctccatctgcacccctgatgtctaggaagcacattaaacattttg Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATAC-ATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag aagaatttgcctacaagcaaaactaaattagttctctgctgttcacataggcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACCATCCAACTTGTAGAGCAACTGAGGAAC-AGGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTaggtaatctccatctgcacccctgatgtctaggaagcacattaaacattttg Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aagaatttgcctacaagcaaaactaaattagttctctgctgttcacatagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACCATCCAACTTGTAGAGCAACTGAGGAACAGGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaatctccatctgcacccctgatgtctaggaagcacattaaacattttg Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATA-CATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aagaatttgcctacaagcaaaactaaattagttctctgctgttcacatagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACCATCCAACTTGTAGAGCAACTGAGGAACA-GGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaatctccatctgcacccctgatgtctaggaagcacattaaacattttg Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATA-CATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aagaatttgcctacaagcaaaactaaattagttctctgctgttcacatagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACCATCCAACTTGTAGAGCAACTGAGGAACA-GGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaatctccatctgcacccctgatgtctaggaagcacattaaacattttg Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aagaatttgcctacaagcaaaactaaattagttctctgctgttcacatagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACCATCCAACTTGTAGAGCAACTGAGGAACAGGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaatctccatctgcacccctgatgtctaggaagcacattaaacattttg Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aagaatttgcctacaagcaaaactaaattagttctctgctgttcacatagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACCATCCAACTTGTAGAGCAACTGAGGAACAGGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaatctccatctgcacccctgatgtctaggaagcacattaaacattttg Alignment from GeneWise GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aagaatttgcctacaagcaaaactaaattagttctctgctgttcacatagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACCATCCAACTTGTAGAGCAACTGAGGAACAGGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaatctccatctgcacccctgatgtctaggaagcacattaaacattttg #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGC-CTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagacCTTGTCAAAAGCCGTCCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTA-TGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from CESAR acCTTGTCAAAAGCCGC-CTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagacCTTGTCAAAAGCCGTCCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCT-ATGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Spaln_aa2Genome GACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagACCTTGTCAAAAGCCGTCCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAT-GTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCG-CCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagACCTTGTCAAAAGCCGTCCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTA-TGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Pairagon ACCTTGTCAAAAGCCG-CCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagACCTTGTCAAAAGCCGTCCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTA-TGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Exonerate_protein2genome TCGACCTTGTCAAAAGCCGC-CTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCT--AGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaaCAGACCTTGTCAAAAGCCGTCCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAT---GTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Exonerate_coding2genome TCGACCTTGTCAAAAGCCGC-CTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCT--AGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaaCAGACCTTGTCAAAAGCCGTCCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAT---GTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from GeneWise GACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagACCTTGTCAAAAGCCGTCCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAT-GTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAACTTTGTGGAGGGAATGGCGTTAGGATTGAAAG-ACTAGTTGGTGGAGCCGTTggtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAACTTTGTGGAGGGAATGGCGTTAGGATTGAAA-GACTAGTTGGTGGAGCCGTTggtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAAcTTTGTGGAGGGAATGGCGTTAGGATTGAAAGA-CTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAACTTTGTGGAGGGAATGGCGTTAGGATTGAAAG-ACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAACTTTGTGGAGGGAATGGCGTTAGGATTGAAAG-ACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAACTTTGTGGAGGGAATGGCGTTAGGATTGAAAGACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAACTTTGTGGAGGGAATGGCGTTAGGATTGAAAGACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAACTTTGTGGAGGGAATGGCGTTAGGATTGAAAGACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCC-GGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATC-CGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCA-TCCGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCC-GGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagacTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATG-TGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from CESAR acTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagacTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCCTGGAT-GTGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAcAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGT-GAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATG-TGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Pairagon ACTGTAACTTCGAAGGGAGA-AAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATG-TGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGTGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGTGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGACAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGTGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCA-AATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagggGTGAACCTTCAACGGAAACATACAGCTCAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAG-GAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCA-AATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagggGTGAACCTTCAACGGAAACATACAGCTCAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCA-GGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTCAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCA-AATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTCAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAG-GAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGC-AAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTCAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAG-GAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTCAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Exonerate_coding2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTCAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from GeneWise GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTCAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGT-GGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtaggtAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTCGGCCTGGACAGAGTCTTGAGGATATACAGGATCC-CAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGT-GGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtaggtAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTCGGCCTGGACAGAGTCTTGAGGATATACAGGATC-CCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGT-GGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTcGGCCTGGACAGAGTCTTGAGGATATACAGGATCCC-AATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGT-GGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTCGGCCTGGACAGAGTCTTGAGGATATACAGGATCC-CAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGT-GGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTCGGCCTGGACAGAGTCTTGAGGATATACAGGATCC-CAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTCGGCCTGGACAGAGTCTTGAGGATATACAGGATCCCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTCGGCCTGGACAGAGTCTTGAGGATATACAGGATCCCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from GeneWise TCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtaggtagACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTCGGCCTGGACAGAGTCTTGAGGATATACAGGATCCCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAA-AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAACAACTGCAAAAAGCTACTCAAGAAACTGGGAA-ATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAggtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from CESAR ACTCATAAGAAGAATGTAGAA-AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAACAACTGCAAAAAGCTACTCAAGAAACTGG-GAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAggtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAACAACTGCAAAAAGCTACTCAAGAAACTGGGAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAA-AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAACAACTGCAAAAAGCTACTCAAGAAACT-GGGAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Pairagon ACTCATAAGAAGAATGTAGAA-AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAACAACTGCAAAAAGCTACTCAAGAAACTGGG-AAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAACAACTGCAAAAAGCTACTCAAGAAACTGGGAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAACAACTGCAAAAAGCTACTCAAGAAACTGGGAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAACAACTGCAAAAAGCTACTCAAGAAACTGGGAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGAC-AACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagggGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACCAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTG-TGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGAC-AACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagggGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACCAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTG-TGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGAC-AACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACcAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGT-GATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGAC-AACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACCAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGT-GATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGA-CAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACCAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGT-GATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACCAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACCAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACCAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGAC-CCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCT-CATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGAC-CCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCT-CATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCTCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCC-AGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCT-CATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGA-CCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCT-CATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCTCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCTCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaACCTACAGCTATTTCTGCTTATCTGCAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCTCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt #### Yif1a_ID831_3 --> 0 - 0 Original Alignment CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACA-AGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from CESAR CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGAC-AAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Spaln_aa2Genome CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGcTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACAA-GCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Spaln_nt2Genome CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACA-AGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Pairagon CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACA-AGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Exonerate_protein2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACAAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Exonerate_coding2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACAAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from GeneWise CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACAAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacaggTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGG-GTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacaggTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAG-GGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCcCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGG-TTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCC-TGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGG-GTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGG-CCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGG-GTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAG--GTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGG---TTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAG-GGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGG-TTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTC-CGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCCGAACCTACTCAGTACCACAGCTCTGCTGGCATT-CTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCACTCCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTC-CGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCCGAACCTACTCAGTACCACAGCTCTGCTGGC-ATTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCACTCCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCACTCCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTC-CGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCCGAACCTACTCAGTACCACAGCTCTGCTGGCA-TTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCACTCCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCT-CCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCCGAACCTACTCAGTACCACAGCTCTGCTGGCA-TTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCACTCCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCACTCCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCACTCCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCACTCCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATC-TGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACAC-CCACTGCAGCATCTGTAACaggtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATC-TGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACA-CCCACTGCAGCATCTGTAACaggtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATC-TGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCcTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACC-CACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATC-TGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACAC-CCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCAT-CTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACAC-CCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATC-TGTAAGAAGTGCATTTATCCCAAGCCAGCCCGA--ACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACC---CACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATC-TGTAAGAAGTGCATTTATCCCAAGCCAGCCCGA--ACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACC---CACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACCCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATC-ACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg accctttggccaccaggggtcatagtactctttaacttttctgtttttagggCGTCGACGATCCCCTGGTCACCACAACATCCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGG-CTTTGAGGACGCAGCTAAACTTGAGCCCTCAggtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATC-ACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg accctttggccaccaggggtcatagtactctttaacttttctgtttttagggCGTCGACGATCCCCTGGTCACCACAACATCCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAG-TGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAggtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATC-ACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTGGTCACCACAACATCcACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGT-GGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACAT-CACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTGGTCACCACAACATCCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGG-CTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACAT-CACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTGGTCACCACAACATCCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGT-GGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATC-ACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCA--GTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTGGTCACCACAACATCCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGT---GGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATC-ACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTGGTCACCACAACATCCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTG-GCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTGGTCACCACAACATCCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACT-GATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagatAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTCGATCCCAGTCTGGTTCTGGTGTTACACCAGT-CTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACT-GATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagatAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTCGATCCCAGTCTGGTTCTGGTGTTACACCAG-TCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTCGATCCCAGTCTGGTTCTGGTGTTACACCAGTCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACT-GATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTCGATCCCAGTCTGGTTCTGGTGTTACACCAGT-CTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACT-GATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTCGATCCCAGTCTGGTTCTGGTGTTACACCAGT-CTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTCGATCCCAGTCTGGTTCTGGTGTTACACCAGTCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTCGATCCCAGTCTGGTTCTGGTGTTACACCAGTCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTCGATCCCAGTCTGGTTCTGGTGTTACACCAGTCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCA-GACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGCGACCACACCGTGACTCCGGACCCCTACCTGGCTCCAC-CACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGATTCTGTAggtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCA-GACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGCGACCACACCGTGACTCCGGACCCCTACCTGGCTCCAC-CACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGATTCTGTAggtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGCGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCA-GACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGCGACCACACCGTGACTCCGGACCCCTACCTGGCTCCA-CCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCA-GACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGCGACCACACCGTGACTCCGGACCCCTACCTGGCTCCA-CCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCA-GACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCC--ACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGCGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCACC---ACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCA-GACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCC--ACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGCGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCACC---ACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGCGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta ####