#### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTT-GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTCGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCTGTGA-CTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAggtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTT-GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTCGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCTG-TGACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAggtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAAcCCTTTCGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCTGTGAC-TTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTT-GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTCGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCTGTGA-CTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTT-GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTCGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCTGTG-ACTTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTG--AACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTCGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCTGTGAC---TTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTG--AACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTCGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCTGTGAC---TTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATC-CGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTCGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCTGTGAC-TTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGG-CGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCCAGAGGAAACGCCAGGTGGTTGGGGCTGTGA-AGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGG-CGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCCAGAGGAAACGCCAGGTGGTTGGGGCTGTG-AAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCCAGAGGAAACGCCAGGTGGTTGGGGCTGTGAAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGAC-GGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCCAGAGGAAACGCCAGGTGGTTGGGGCTGTGA-AGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGAC-GGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCCAGAGGAAACGCCAGGTGGTTGGGGCTGTGA-AGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCCAGAGGAAACGCCAGGTGGTTGGGGCTGTGAAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCCAGAGGAAACGCCAGGTGGTTGGGGCTGTGAAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCCAGAGGAAACGCCAGGTGGTTGGGGCTGTGAAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcaggTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCC-GAAACAAAAAGCAGCCATGAAAggtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcaggTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCC-CGAAACAAAAAGCAGCCATGAAAggtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCcAGGAAACTCTTGCAGCAGATCCGACTTGCCCG-AAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCG-CAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCC-GAAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Pairagon GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCG-CAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCC-GAAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCCGAAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCCGAAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCCGAAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATC-AGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATCA-CAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from CESAR GTCACAGATAATATC-AGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGA-TCACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Spaln_aa2Genome GATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcaggtcacagATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATCAC-AGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Spaln_nt2Genome GTCACAGATAATATC-AGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATC-ACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Pairagon GTCACAGATAATAT-CAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATC-ACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATCACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Exonerate_coding2genome GTGACTGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAAT-----ATCCAGCCAGAACACTATCCTGGAATATGTAATGAT-CACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from GeneWise ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcaggtcacagataatatccagccagaacactatcctggaatatgtaatgatcacagtatatttgaagccattttacaggtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta #### A630007B06Rik_ID12189_8 --> 0 - 0 Original Alignment ATGCATCATGCC-AAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG ggattgtgccatctatgtcccttggcaacctttgattcttcccactgcagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGA-GACATTTAAGGAGGGCATGGACGAATTACAGACATTGAGAACAAAGgtgagtaaccctcattcctaactcatatggggtggacactgttagtttag Alignment from CESAR ATGCATCATGCC-AAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG ggattgtgccatctatgtcccttggcaacctttgattcttcccactgcagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGA-GACATTTAAGGAGGGCATGGACGAATTACAGACATTGAGAACAAAGgtgagtaaccctcattcctaactcatatggggtggacactgttagtttag Alignment from Spaln_aa2Genome ATGCATCATGCC-AAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG ggattgtgccatctatgtcccttggcaacctttgattcttcccactgcagATGCATCATGCCcAAAATAAAGGAGCTAGAAGATCTCAAGAG-ACATTTAAGGAGGGCATGGACGAATTACAGACATTGAGAACAAAGgtgagtaaccctcattcctaactcatatggggtggacactgttagtttag Alignment from Spaln_nt2Genome ATGCATCATGCC-AAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG ggattgtgccatctatgtcccttggcaacctttgattcttcccactgcagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGA-GACATTTAAGGAGGGCATGGACGAATTACAGACATTGAGAACAAAGgtgagtaaccctcattcctaactcatatggggtggacactgttagtttag Alignment from Pairagon ATGCATCATG-CCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG ggattgtgccatctatgtcccttggcaacctttgattcttcccactgcagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGA-GACATTTAAGGAGGGCATGGACGAATTACAGACATTGAGAACAAAGgtgagtaaccctcattcctaactcatatggggtggacactgttagtttag Alignment from Exonerate_protein2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG ggattgtgccatctatgtcccttggcaacctttgattcttcccactgcagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGACATTTAAGGAGGGCATGGACGAATTACAGACATTGAGAACAAAGgtgagtaaccctcattcctaactcatatggggtggacactgttagtttag Alignment from Exonerate_coding2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG ggattgtgccatctatgtcccttggcaacctttgattcttcccactgcagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGACATTTAAGGAGGGCATGGACGAATTACAGACATTGAGAACAAAGgtgagtaaccctcattcctaactcatatggggtggacactgttagtttag Alignment from GeneWise ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG ggattgtgccatctatgtcccttggcaacctttgattcttcccactgcagATGCATCATGCCCAAAATAAAGGAGCTAGAAGATCTCAAGAGACATTTAAGGAGGGCATGGACGAATTACAGACATTGAGAACAAAGgtgagtaaccctcattcctaactcatatggggtggacactgttagtttag #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATC-TCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagaaTCAGGCCAGGATGGCCGGCCAGATCCCATCCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGA-AGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATC-TCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagaaTCAGGCCAGGATGGCCGGCCAGATCCCATCCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAG-AAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGAAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCAT-CTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGA-AGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCAT-CTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGA-AGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGAAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGAAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGAAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGT-TTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaagcctgacatttttgttcttcagGATAGCAAGTCTAACATGACCTATTCCTGTCTGTTCTTTATCTCCTATGGTCTTCCAGATTGTCATTTTGATCCTTTCAGCATTTTCAGAAT-AAGTGACTCAACACATgtgagtctctacagccattcattgcacacgttgttatacctgcaggatgc Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGT-TTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaagcctgacatttttgttcttcagGATAGCAAGTCTAACATGACCTATTCCTGTCTGTTCTTTATCTCCTATGGTCTTCCAGATTGTCATTTTGATCCTTTCAGCATTTTCAGAA-TAAGTGACTCAACACATgtgagtctctacagccattcattgcacacgttgttatacctgcaggatgc Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGT-TTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaagcctgacatttttgttcttcagGATAGCAAGTCTAACATGACCTATTCCTGTCTGTTCTTTATCTCCTATGGTcTTCCAGATTGTCATTTTGATCCTTTCAGCATTTTCAGAATA-AGTGACTCAACACATgtgagtctctacagccattcattgcacacgttgttatacctgcaggatgc Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGT-TTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaagcctgacatttttgttcttcagGATAGCAAGTCTAACATGACCTATTCCTGTCTGTTCTTTATCTCCTATGGTCTTCCAGATTGTCATTTTGATCCTTTCAGCATTTTCAGAAT-AAGTGACTCAACACATgtgagtctctacagccattcattgcacacgttgttatacctgcaggatgc Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGT-TTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaagcctgacatttttgttcttcagGATAGCAAGTCTAACATGACCTATTCCTGTCTGTTCTTTATCTCCTATGGTCTTCCAGATTGTCATTTTGATCCTTTCAGCATTTTCAGAAT-AAGTGACTCAACACATgtgagtctctacagccattcattgcacacgttgttatacctgcaggatgc Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGT-TTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACA aagagactgcattttgtatgtttgttaagcctgacatttttgttcttcagGATAGCAAGTCTAACATGACCTATTCCTGTCTGTTCTTTATCTCCTATGGTCTTCCAGATTGTCATTTTGATCCTTTCAGCATTTTCAGAATAAGTGACTCAACACATgtgagtctctacagccattcattgcacacgttgttatacctgcaggatgc Alignment from Exonerate_coding2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTT---CCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaagcctgacatttttgttcttcagGATAGCAAGTCTAACATGACCTATTCCTGTCTGTTCTTTATCTCCTATGGT--CTTCCAGATTGTCATTTTGATCCTTTCAGCATTTTCAGAATA-AGTGACTCAACACATgtgagtctctacagccattcattgcacacgttgttatacctgcaggatgc Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaagcctgacatttttgttcttcagGATAGCAAGTCTAACATGACCTATTCCTGTCTGTTCTTTATCTCCTATGGTCTTCCAGATTGTCATTTTGATCCTTTCAGCATTTTCAGAATAAGTGACTCAACACATgtgagtctctacagccattcattgcacacgttgttatacctgcaggatgc #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCA-CTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from CESAR AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aggaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTC-ACTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Spaln_aa2Genome AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGcATGGAGCCCGACGACTTCCGAGCTTGTCTCAC-TCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCA-CTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Pairagon AAGCGGAATGGGATG-ATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCA-CTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Exonerate_protein2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCACTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Exonerate_coding2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCACTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from GeneWise AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGCATGGAGCCCGACGACTTCCGAGCTTGTCTCACTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAG-GAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGCGAGCAGATGGCAGGTCTGCGCCAGCAGG-ACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAG-GAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGCGAGCAGATGGCAGGTCTGCGCCAGCAGG-ACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGCGAGCAGATGGCAGGTCTGCGCCAGCAGGACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAG-GAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGCGAGCAGATGGCAGGTCTGCGCCAGCAGG-ACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAG-GAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGCGAGCAGATGGCAGGTCTGCGCCAGCAGG-ACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGCGAGCAGATGGCAGGTCTGCGCCAGCAGGACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGCGAGCAGATGGCAGGTCTGCGCCAGCAGGACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGCGAGCAGATGGCAGGTCTGCGCCAGCAGGACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTACCCAGCCGTGACCAG-ACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGCACACTCCAGGAGAAGCTGGCCCGGCAGCAAG-GAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from CESAR GTCAGA---AAGCTGGTACCCAGCCGTGACCAG-ACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGCACACTCCAGGAGAAGCTGGCCCGGCAGCAA-GGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Spaln_aa2Genome GTCAGAAAGCTGGTA---CCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGCACACTCCAGGAGAAGCTGGCCCGGCAGCAAGGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Spaln_nt2Genome GTCAGAAA---GCTGGTACCCAGCCGTGACCAG-ACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGCACACTCCAGGAGAAGCTGGCCCGGCAGCAAG-GAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Pairagon GTCAG---AAAGCTGGTACCCAGCCGTGACCAG-ACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGCACACTCCAGGAGAAGCTGGCCCGGCAGCAAG-GAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Exonerate_protein2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGCACACTCCAGGAGAAGCTGGCCCGGCAGCAAGGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Exonerate_coding2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGCACACTCCAGGAGAAGCTGGCCCGGCAGCAAGGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from GeneWise GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGCACACTCCAGGAGAAGCTGGCCCGGCAGCAAGGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGA-GAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGACGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGT-TGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGA-GAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGACGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAG-TTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGACGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGA-GAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGACGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGT-TGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGA-GAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGACGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGT-TGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGA-GAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAG--TCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGACGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTT---GGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGA-GAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAG--TCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGACGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTT---GGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGACGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAG-CTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgagaagaatctggatttgcttctttttttccctcagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCT-CTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTTGTCCATTCTGTGGAGGAGACACAGgtactggaaggcattagggggggagtctttggatgcactttatgtggtgt Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAG-CTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgagaagaatctggatttgcttctttttttccctcagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCT-CTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTTGTCCATTCTGTGGAGGAGACACAGgtactggaaggcattagggggggagtctttggatgcactttatgtggtgt Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgagaagaatctggatttgcttctttttttccctcagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTTGTCCATTCTGTGGAGGAGACACAGgtactggaaggcattagggggggagtctttggatgcactttatgtggtgt Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAG-CTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgagaagaatctggatttgcttctttttttccctcagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGCTTGCTCGCCGGGCAG-CCTCTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTTGTCCATTCTGTGGAGGAGACACAGgtactggaaggcattagggggggagtctttggatgcactttatgtggtgt Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAG-CTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgagaagaatctggatttgcttctttttttccctcagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGCTTGCTCGCCGGGCAG-CCTCTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTTGTCCATTCTGTGGAGGAGACACAGgtactggaaggcattagggggggagtctttggatgcactttatgtggtgt Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgagaagaatctggatttgcttctttttttccctcagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTTGTCCATTCTGTGGAGGAGACACAGgtactggaaggcattagggggggagtctttggatgcactttatgtggtgt Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgagaagaatctggatttgcttctttttttccctcagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTTGTCCATTCTGTGGAGGAGACACAGgtactggaaggcattagggggggagtctttggatgcactttatgtggtgt Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgagaagaatctggatttgcttctttttttccctcagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTTGTCCATTCTGTGGAGGAGACACAGgtactggaaggcattagggggggagtctttggatgcactttatgtggtgt #### Actn3_ID697_13 --> 1 - 0 Original Alignment tGAGCTCGACTACCATGAG-GCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG acccaccttgggtctaacactacacatatgtctccattacacttttttagtGAGCTTGACTACCATGAGCGCAGCTTCTGTGAACAGCCGGTGCCAAGCCATCTGTG-CCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtgaggggcagggccgcaaggagataagaccagcaggctgagaagaatct Alignment from CESAR tGAGCTCGACTACCATGAG-GCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG acccaccttgggtctaacactacacatatgtctccattacacttttttagtGAGCTTGACTACCATGAGCGCAGCTTCTGTGAACAGCCGGTGCCAAGCCATCTGT-GCCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtgaggggcagggccgcaaggagataagaccagcaggctgagaagaatct Alignment from Spaln_aa2Genome TGAGCTCGACTACCATGAG-GCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG acccaccttgggtctaacactacacatatgtctccattacacttttttagTGAGCTTGACTACCATGAGcGCAGCTTCTGTGAACAGCCGGTGCCAAGCCATCTGTGC-CAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtgaggggcagggccgcaaggagataagaccagcaggctgagaagaatct Alignment from Spaln_nt2Genome TGAGCTCGACTACCATGAG-GCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG acccaccttgggtctaacactacacatatgtctccattacacttttttagTGAGCTTGACTACCATGAGCGCAGCTTCTGTGAACAGCCGGTGCCAAGCCATCTGTG-CCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtgaggggcagggccgcaaggagataagaccagcaggctgagaagaatct Alignment from Pairagon TGAGCTCGACTACCATGAG-GCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG acccaccttgggtctaacactacacatatgtctccattacacttttttagTGAGCTTGACTACCATGAGCGCAGCTTCTGTGAACAGCCGGTGCCAAGCCATCTGTG-CCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtgaggggcagggccgcaaggagataagaccagcaggctgagaagaatct Alignment from Exonerate_protein2genome TGAGCTCGACTACCATGAG-GCAGCCTCCGTGAACAGCCGCTGCCAAGCCATC--TGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG acccaccttgggtctaacactacacatatgtctccattacacttttttagTGAGCTTGACTACCATGAGCGCAGCTTCTGTGAACAGCCGGTGCCAAGCCATCTGTGC---CAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtgaggggcagggccgcaaggagataagaccagcaggctgagaagaatct Alignment from Exonerate_coding2genome TGAGCTCGACTACCATGAG-GCAGCCTCCGTGAACAGCCGCTGCCAAGCCATC--TGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG acccaccttgggtctaacactacacatatgtctccattacacttttttagTGAGCTTGACTACCATGAGCGCAGCTTCTGTGAACAGCCGGTGCCAAGCCATCTGTGC---CAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtgaggggcagggccgcaaggagataagaccagcaggctgagaagaatct Alignment from GeneWise TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG acccaccttgggtctaacactacacatatgtctccattacacttttttagTGAGCTTGACTACCATGAGCGCAGCTTCTGTGAACAGCCGGTGCCAAGCCATCTGTGCCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtgaggggcagggccgcaaggagataagaccagcaggctgagaagaatct #### Actn3_ID704_6 --> 1 - 0 Original Alignment cTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG acacatccctgccgtaaaccggggcctaatgtaatgatttgacttcacagcTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCGG-CCTTATTGACTATGCCAAGCTCCACAAGgtgagctgcacctctacaactcataactctatagtctctgccttcagctg Alignment from CESAR cTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG acacatccctgccgtaaaccggggcctaatgtaatgatttgacttcacagcTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCG-GCCTTATTGACTATGCCAAGCTCCACAAGgtgagctgcacctctacaactcataactctatagtctctgccttcagctg Alignment from Spaln_aa2Genome CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG acacatccctgccgtaaaccggggcctaatgtaatgatttgacttcacagCTGGAAGGATGGCCTGcGCCCTTTGTGCTCTTATCCACCGGCACCGGCCGGC-CTTATTGACTATGCCAAGCTCCACAAGgtgagctgcacctctacaactcataactctatagtctctgccttcagctg Alignment from Spaln_nt2Genome CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG acacatccctgccgtaaaccggggcctaatgtaatgatttgacttcacagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCGGC-CTTATTGACTATGCCAAGCTCCACAAGgtgagctgcacctctacaactcataactctatagtctctgccttcagctg Alignment from Pairagon CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG acacatccctgccgtaaaccggggcctaatgtaatgatttgacttcacagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCC-GGCCTTATTGACTATGCCAAGCTCCACAAGgtgagctgcacctctacaactcataactctatagtctctgccttcagctg Alignment from Exonerate_protein2genome CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCA--GACCTCATTGACTATGCCAAGCTTCGCAAG acacatccctgccgtaaaccggggcctaatgtaatgatttgacttcacagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCGGC---CTTATTGACTATGCCAAGCTCCACAAGgtgagctgcacctctacaactcataactctatagtctctgccttcagctg Alignment from Exonerate_coding2genome CTGGAAGGATGGCCTG-GCCCTCTGTGCTCTCATCCACCGTCACCGGCCA--GACCTCATTGACTATGCCAAGCTTCGCAAG acacatccctgccgtaaaccggggcctaatgtaatgatttgacttcacagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCGGC---CTTATTGACTATGCCAAGCTCCACAAGgtgagctgcacctctacaactcataactctatagtctctgccttcagctg Alignment from GeneWise CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG acacatccctgccgtaaaccggggcctaatgtaatgatttgacttcacagCTGGAAGGATGGCCTGCGCCCTTTGTGCTCTTATCCACCGGCACCGGCCGGCCTTATTGACTATGCCAAGCTCCACAAGgtgagctgcacctctacaactcataactctatagtctctgccttcagctg #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgagtagtgcatgaacagggccagctcataaaattgtgtttctctttaagagACTGCATCCAAACAAGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTAC-GAACTTCCATACTaggtatacctgatggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgagtagtgcatgaacagggccagctcataaaattgtgtttctctttaagagACTGCATCCAAACAAGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTA-CGAACTTCCATACTaggtatacctgatggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgagtagtgcatgaacagggccagctcataaaattgtgtttctctttaagAGACTGCATCCAAACAAGGCTTGTTCCTCTGGcTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACG-AACTTCCATACTAGgtatacctgatggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgagtagtgcatgaacagggccagctcataaaattgtgtttctctttaagAGACTGCATCCAAACAAGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTAC-GAACTTCCATACTAGgtatacctgatggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgagtagtgcatgaacagggccagctcataaaattgtgtttctctttaagAGACTGCATCCAAACAAGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTAC-GAACTTCCATACTAGgtatacctgatggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgagtagtgcatgaacagggccagctcataaaattgtgtttctctttaagAGACTGCATCCAAACAAGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACGAACTTCCATACTAGgtatacctgatggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgagtagtgcatgaacagggccagctcataaaattgtgtttctctttaagAGACTGCATCCAAACAAGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACGAACTTCCATACTAGgtatacctgatggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgagtagtgcatgaacagggccagctcataaaattgtgtttctctttaagAGACTGCATCCAAACAAGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACGAACTTCCATACTAGgtatacctgatggcctccagtgaatgcaagtaaggtgtttgctggcaact #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTG-GGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gggccacgagcttctgtaccaaggtctgaatcaatacattttgtctttagaaATTGTTGACGGGAACCTGAAAATGACCCTTCGGCATGATCTGGACAATCATCCTCCGCTTTGCCA-TCAGGACATCTCTGTAGAAggtaagttgatgagtagtgcatgaacagggccagctcattgtcccttttgg Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTG-GGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gggccacgagcttctgtaccaaggtctgaatcaatacattttgtctttagaaATTGTTGACGGGAACCTGAAAATGACCCTTCGGCATGATCTGGACAATCATCCTCCGCTTTGCCA-TCAGGACATCTCTGTAGAAggtaagttgatgagtagtgcatgaacagggccagctcataaaattgtgttt Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTG-GGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gggccacgagcttctgtaccaaggtctgaatcaatacattttgtctttagAAATTGTTGACGGGAACCTGAAAATGACCCTTcGGCATGATCTGGACAATCATCCTCCGCTTTGCCAT-CAGGACATCTCTGTAGAAGgtaagttgatgagtagtgcatgaacagggccagctcattgtcccttttgg Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTG-GGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gggccacgagcttctgtaccaaggtctgaatcaatacattttgtctttagAAATTGTTGACGGGAACCTGAAAATGACCCTTCGGCATGATCTGGACAATCATCCTCCGCTTTGCCAT-CAGGACATCTCTGTAGAAGgtaagttgatgagtagtgcatgaacagggccagctcattgtcccttttgg Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCC-TGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gggccacgagcttctgtaccaaggtctgaatcaatacattttgtctttagAAATTGTTGACGGGAACCTGAAAATGACCCTTCGGCATGATCTGGACAATCATCCTCCGCTTTGCCA-TCAGGACATCTCTGTAGAAGgtaagttgatgagtagtgcatgaacagggccagctcattgtcccttttgg Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTG-GGCATGATCTGGACCATCATCCTCCGCTTTGCC--ATTCAGGACATCTCTGTAGAAG gggccacgagcttctgtaccaaggtctgaatcaatacattttgtctttagAAATTGTTGACGGGAACCTGAAAATGACCCTTCGGCATGATCTGGACAATCATCCTCCGCTTTGCCAT---CAGGACATCTCTGTAGAAGgtaagttgatgagtagtgcatgaacagggccagctcattgtcccttttgg Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGG---CATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gggccacgagcttctgtaccaaggtctgaatcaatacattttgtctttagAAATTGTTGACGGGAACCTGAAAATGACCCTT--CGGCATGATCTGGACAATCATCCTCCGCTTTGCCAT-CAGGACATCTCTGTAGAAGgtaagttgatgagtagtgcatgaacagggccagctcattgtcccttttgg Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gggccacgagcttctgtaccaaggtctgaatcaatacattttgtctttagAAATTGTTGACGGGAACCTGAAAATGACCCTTCGGCATGATCTGGACAATCATCCTCCGCTTTGCCATCAGGACATCTCTGTAGAAGgtaagttgatgagtagtgcatgaacagggccagctcattgtcccttttgg #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTG-TTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg atagctaagcccaggctgtttgcctgtcttgctctcttttgtgtttgcaggcCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGCTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTTG-CTTCATTGAGCTCTTTAACCAAggtatgcccttttccagtggcctgtcaggaagatcaatctgaggagagggt Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTG-TTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg atagctaagcccaggctgtttgcctgtcttgctctcttttgtgtttgcaggcCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGCTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTT-GCTTCATTGAGCTCTTTAACCAAggtatgcccttttccagtggcctgtcaggaagatcaatctgaggagagggt Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcttgctctcttttgtgtttgcagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGCTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTTGCTTCATTGAGCTCTTTAACCAAGgtatgcccttttccagtggcctgtcaggaagatcaatctgaggagagggt Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTG-TTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcttgctctcttttgtgtttgcagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGCTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTTG-CTTCATTGAGCTCTTTAACCAAGgtatgcccttttccagtggcctgtcaggaagatcaatctgaggagagggt Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTG-TTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcttgctctcttttgtgtttgcagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGCTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTTG-CTTCATTGAGCTCTTTAACCAAGgtatgcccttttccagtggcctgtcaggaagatcaatctgaggagagggt Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcttgctctcttttgtgtttgcagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGCTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTTGCTTCATTGAGCTCTTTAACCAAGgtatgcccttttccagtggcctgtcaggaagatcaatctgaggagagggt Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcttgctctcttttgtgtttgcagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGCTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTTGCTTCATTGAGCTCTTTAACCAAGgtatgcccttttccagtggcctgtcaggaagatcaatctgaggagagggt Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcttgctctcttttgtgtttgcagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGCTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTTGCTTCATTGAGCTCTTTAACCAAGgtatgcccttttccagtggcctgtcaggaagatcaatctgaggagagggt #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATG-GATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccaggcATGGACTTACCAGCCTTTGAGATGCGATATCTACAGGAACTTGGGAAGTGTGGACTTCC-ACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATG-GATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccaggcATGGACTTACCAGCCTTTGAGATGCGATATCTACAGGAACTTGGGAAGTGTGGACT-TCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGCGATATCTACAGGAACTTGGGAAGTGTGGACTTCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATG-GATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGCGATATCTACAGGAACTTGGGAAGTGTGGACTT-CCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATG-GATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGCGATATCTACAGGAACTTGGGAAGTGTGGACTT-CCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGCGATATCTACAGGAACTTGGGAAGTGTGGACTTCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGCGATATCTACAGGAACTTGGGAAGTGTGGACTTCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGCGATATCTACAGGAACTTGGGAAGTGTGGACTTCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTGACCATGGAGGAG-ATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAACATTCAGTCTGTCGAAGGGACACAGATCAAGGAAC-CAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAG-ATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAACATTCAGTCTGTCGAAGGGACACAGATCAAGGAA-CCAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Spaln_aa2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAACATTCAGTCTGTCGAAGGGACACAGATCAAGGAACCAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAG-ATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAACATTCAGTCTGTCGAAGGGACACAGATCAAGGAAC-CAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Pairagon CAGAGCCTCCTGACCATGGAGGAG-ATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAACATTCAGTCTGTCGAAGGGACACAGATCAAGGAAC-CAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAACATTCAGTCTGTCGAAGGGACACAGATCAAGGAACCAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Exonerate_coding2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAACATTCAGTCTGTCGAAGGGACACAGATCAAGGAACCAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAACATTCAGTCTGTCGAAGGGACACAGATCAAGGAACCAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGAC-TGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagacTATGCCTTGGGTAAGGACCTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACC-CTTCCTGACCCAGTGGCAACGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from CESAR acTATGCCCTGGGTAAGGAC-TGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagacTATGCCTTGGGTAAGGACCTGCATAGTAGATGGCTACATGTCCAAGATGGGCA-ACCCTTCCTGACCCAGTGGCAACGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACCTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCTTCCTGACCCAGTGGCAACGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGA-CTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACCTGCATAGTAGATGGCTACATGTCCAAGAT-GGGCAACCCTTCCTGACCCAGTGGCAACGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Pairagon ACTATGCCCTGGGTAAGGA-CTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACCTGCATAGTAGATGGCTACATGTCCAAGATGGGCAA-CCCTTCCTGACCCAGTGGCAACGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACCTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCTTCCTGACCCAGTGGCAACGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACCTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCTTCCTGACCCAGTGGCAACGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACCTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCTTCCTGACCCAGTGGCAACGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcaggGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from CESAR gGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcaggGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATG-GCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Spaln_aa2Genome GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAcGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGC-TTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Pairagon GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Exonerate_protein2genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAA actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Exonerate_coding2genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAA actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCT-GAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTCGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGA-GGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGGgggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCT-GAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTCGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGA-GGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGGgggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTCGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGGGGgtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCT-GAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTCGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGA-GGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGGGGgtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCT-GAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTCGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGA-GGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGGGGgtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTCGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGggggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTCGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGggggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTCGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGGGGgtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAA-CATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACCATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTG-CTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaactgcccaggtattcactccaaccacaaccttcttcctctttctgtg Alignment from CESAR CCAGCCAACATTCTCCTGGATGAA-CATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACCATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGT-GCTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaactgcccaggtattcactccaaccacaaccttcttcctctttaccct Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAA-CATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAAcCATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGC-TTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctctttctgtg Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAA-CATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACCATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTG-CTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctctttctgtg Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAA-CATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACCATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTG-CTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctctttctgtg Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAA-CATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCC--TGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACCATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGC---TTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctctttctgtg Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAA-CATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCC--TGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACCATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGC---TTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctctttctgtg Alignment from GeneWise CCAGCCAACATTCTCCTGGAT-GAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCT---------------------------CATGCC---------------------AGTGTG cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACCATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGCTTCTCCAAGAAGAGGCCCCATGCCAGTGTGTAACTGCCCAGGTATTCACTCCAACCACAACCTTCTTCCTCTTTCTGTG #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GACAAG-AAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctaggTATGCCATGAGGTGTCTGGACAACAAGCAAACGCATCAAGATGAAACAGGGAGAGACCCTGG-TCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAG-AAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctaggTATGCCATGAGGTGTCTGGACAACAAGCAAACGCATCAAGATGAAACAGGGAGAGACCCTG-GTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGACAAG----AAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGcAAACGCATCAAGATGAAACAGGGAGAGACCCTGGT-CTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGGACAAGAA----ACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGCAAACGCATCAAGATGAAACAGGGAGAGACCCTGG-TCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Pairagon GTACGCCATGAAGTGTCTGGACAA----GAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGCAAACGCATCAAGATGAAACAGGGAGAGACCCTGG-TCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGCAAACGCATCAAGATGAAACAGGGAGAGACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGCAAACGCATCAAGATGAAACAGGGAGAGACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from GeneWise GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGCAAACGCATCAAGATGAAACAGGGAGAGACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAG-ACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGGAGCACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGA-CTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAG-ACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGGAGCACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAG-ACTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGGAGCACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGACTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAG-ACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGGAGCACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGA-CTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAG-ACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGGAGCACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGA-CTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGGAGCACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGACTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGAC---AGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGGAG--CACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGAC-TTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGGAGCACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGACTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTC-AACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtgttaatatatacataataatttgaccatactaatgaaaagctgctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTCAATTCAGCATCTGTACTAAAGAACAGGCCACTTT-TGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtcagctgccgcactccaaattgtagatgtagccttgtagcccttgcacg Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTC-AACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtgttaatatatacataataatttgaccatactaatgaaaagctgctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTCAATTCAGCATCTGTACTAAAGAACAGGCCACTT-TTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtcagctgccgcactccaaattgtagatgtagccttgtagcccttgcacg Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTC-AACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtgttaatatatacataataatttgaccatactaatgaaaagctgctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTcAATTCAGCATCTGTACTAAAGAACAGGCCACTTTT-GTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtcagctgccgcactccaaattgtagatgtagccttgtagcccttgcacg Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGT-CAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtgttaatatatacataataatttgaccatactaatgaaaagctgctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTCAATTCAGCATCTGTACTAAAGAACAGGCCACTTT-TGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtcagctgccgcactccaaattgtagatgtagccttgtagcccttgcacg Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAG-TCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtgttaatatatacataataatttgaccatactaatgaaaagctgctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTCAATTCAGCATCTGTACTAAAGAACAGGCCACTTT-TGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtcagctgccgcactccaaattgtagatgtagccttgtagcccttgcacg Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtgttaatatatacataataatttgaccatactaatgaaaagctgctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTCAATTCAGCATCTGTACTAAAGAACAGGCCACTTTTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtcagctgccgcactccaaattgtagatgtagccttgtagcccttgcacg Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtgttaatatatacataataatttgaccatactaatgaaaagctgctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTCAATTCAGCATCTGTACTAAAGAACAGGCCACTTTTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtcagctgccgcactccaaattgtagatgtagccttgtagcccttgcacg Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtgttaatatatacataataatttgaccatactaatgaaaagctgctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTCAATTCAGCATCTGTACTAAAGAACAGGCCACTTTTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtcagctgccgcactccaaattgtagatgtagccttgtagcccttgcacg #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCA-GGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCACACCACCACCCAGGAGGAGCCCCACACAGGGTCAC-AGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCA-GGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCACACCACCACCCAGGAGGAGCCCCACACAGGGTCAC-AGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCACACCACCACCCAGGAGGAGCCCCACACAGGGTCACAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGC-ACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCACACCACCACCCAGGAGGAGCCCCACACAGGGTC-ACAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCA-GGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCACACCACCACCCAGGAGGAGCCCCACACAGGGTC-ACAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCACACCACCACCCAGGAGGAGCCCCACACAGGGTCACAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCACACCACCACCCAGGAGGAGCCCCACACAGGGTCACAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCACACCACCACCCAGGAGGAGCCCCACACAGGGTCACAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTG-CAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCCAGATCACACCACTGCTACCCAATTATTGCC-GTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTG-CAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCCAGATCACACCACTGCTACCCAATTATTGC-CGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTG-CAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCCAGATCACACCACTGCTACCCAATTATTGCC-GTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTG-CAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCCAGATCACACCACTGCTACCCAATTATTGCC-GTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCT-GGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTCGGTACCTATCAACAGGACCCATGGGCAATGACAG-TGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from CESAR GTAGAGAGTCCT-GGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTCGGTACCTATCAACAGGACCCATGGGCAATGACA-GTGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaaggtag---AGAGTCCTCGGTACCTATCAACAGGACCCATGGGCAATGACAGT-GAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Spaln_nt2Genome GTAGAGAGTCCT-GGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTCGGTACCTATCAACAGGACCCATGGGCAATGACAG-TGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Pairagon GTAGAGAGTCCT-GGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTCGGTACCTATCAACAGGACCCATGGGCAATGACAG-TGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTCGGTACCTATCAACAGGACCCATGGGCAATGACAGTGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTCGGTACCTATCAACAGGACCCATGGGCAATGACAGTGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from GeneWise AGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaaggtagagagTCCTC---GGTACCTATCAACAGGACCCATGGGCAATGACAGT-GAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGG-AAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGCAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGA-TTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAggtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGG-AAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGCAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCT-GGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAggtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGG-AAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGcAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAT-TATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGG-AAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGCAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCA-CCCTGGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGG-AAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGCAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGG-ATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGG-AAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGG--AATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGCAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAT---TATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGG-AAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGCAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGG-ATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGCAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC-AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacaggaAACTGTGTGGTATTGAGGCCATCTGAAATTAGTCAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCAC-GCATCTGGACCAGgtgtgtattttttgtttcgtttaaagcagAGCTGCTTTGCTGTGATGTTG Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC-AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacaggaAACTGTGTGGTATTGAGGCCATCTGAAATTAGTCAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCA-CGCATCTGGACCAGgtgtgcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTG Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC---------AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAG-----TAT------------CTGGACCAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTCAAGAACACAGAGATGCAGGCAGAGCTGCTGCCACGCATCTGGACCAGGTGtgTATTTTTTGTTTCGTTTAAAGCAGAGCTGCTTTGCTGTGATGTTG Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAG-CAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGT gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTCAAGAACACAGAGA---TGCAGGCAGAGCTGCTGCCAC-GCATCTGGACCAGGTGTGTATTTTTTGTTTCGTTTAAAGCAGAG--CTGCTTTGCTGTGATGT Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAG-CAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTCAAGAACACAGAGA---TGCAGGCAGAGCTGCTGCCAC-GCATCTGGACCAGGTGTGTATTTTTTGTTTCGTTTAAAGCAGAGCTGCTTTGCTGTGATGTTG Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC-AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCA GAGCTGCTTTGCTGTGATG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTCAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACGCATCTGGACCAGgtgtgtattttttgtttcgtttaaagcagagC---TGCTTTGCTGTGATG Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC-AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCA GAGCTGCTTTGCTGTGATG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTCAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACGCATCTGGACCAGgtgtgtattttttgtttcgtttaaagcagagC---TGCTTTGCTGTGATG Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGC---------AAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAG---------------TATCTG--GACCAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTCAAGAACACAGAGATGCAGGCAGAGCTGCTGCCACGCATCTGGACCAGGTGTGTATTTTTTGTTTCGTTTAAAGCAGAGCTGCTTTGCTGTGATGTTG #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCC-CCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaaggttatgctagttgaataggagcattggctttccccactcaggaAGCCCTCGAGTAGGCAAGATTGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGGAACTGGGGGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCAGAATATATCTTGTGTAGCCAAGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCACCCCAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGA-GCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTggtgagtctcttgttgtctctggccctggcacagagcccatgggaccctta Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCC-AACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaaggttatgctagttgaataggagcattggctttccccactcaggaAGCCCTCGAGTAGGCAAGATTGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGGAACTGGGGGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCAGAATATATCTTGTGTAGCCAAGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCACCCCAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAG-AGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTggtgagtctcttgttgtctctggccctggcacagagcccatgggaccctta Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggttatgctagttgaataggagcattggctttccccactcagGAAGCCCTCGAGTAGGCAAGATTGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGGAACTGGGGGGCAAGAATCCCTGCTATGAT---GACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCAGAATATATCTTGTGTAGCCAAGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCACCCCAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgagtctcttgttgtctctggccctggcacagagcccatgggaccctta Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCC-CAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggttatgctagttgaataggagcattggctttccccactcagGAAGCCCTCGAGTAGGCAAGATTGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGGAACTGGGGGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCAGAATATATCTTGTGTAGCCAAGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCACCCCAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGA-GCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgagtctcttgttgtctctggccctggcacagagcccatgggaccctta Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTC-CCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggttatgctagttgaataggagcattggctttccccactcagGAAGCCCTCGAGTAGGCAAGATTGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGGAACTGGGGGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCAGAATATATCTTGTGTAGCCAAGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCACCCCAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGA-GCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgagtctcttgttgtctctggccctggcacagagcccatgggaccctta Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggttatgctagttgaataggagcattggctttccccactcagGAAGCCCTCGAGTAGGCAAGATTGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGGAACTGGGGGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCAGAATATATCTTGTGTAGCCAAGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCACCCCAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgagtctcttgttgtctctggccctggcacagagcccatgggaccctta Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggttatgctagttgaataggagcattggctttccccactcagGAAGCCCTCGAGTAGGCAAGATTGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGGAACTGGGGGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCAGAATATATCTTGTGTAGCCAAGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCACCCCAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgagtctcttgttgtctctggccctggcacagagcccatgggaccctta Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggttatgctagttgaataggagcattggctttccccactcagGAAGCCCTCGAGTAGGCAAGATTGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGGAACTGGGGGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCAGAATATATCTTGTGTAGCCAAGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCACCCCAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgagtctcttgttgtctctggccctggcacagagcccatgggaccctta #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACC-TTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTCTTGGGGAACTTGGAGTCTGTGCGAGTCCTCCTCCAACATA-TGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTggtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACC-TTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTCTTGGGGAACTTGGAGTCTGTGCGAGTCCTCCTCCAACAT-ATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTggtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTCTTGGGGAACTTGGAGTCTGTGCGAGTCCTCCTCCAACATATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGAC-CTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTCTTGGGGAACTTGGAGTCTGTGCGAGTCCTCCTCCAACATA-TGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGAC-CTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTCTTGGGGAACTTGGAGTCTGTGCGAGTCCTCCTCCAACAT-ATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTCTTGGGGAACTTGGAGTCTGTGCGAGTCCTCCTCCAACATATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Exonerate_coding2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTCTTGGGGAACTTGGAGTCTGTGCGAGTCCTCCTCCAACATATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTCTTGGGGAACTTGGAGTCTGTGCGAGTCCTCCTCCAACATATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTCACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAA-TCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTCACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGC-TAAAAATCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTcACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAAT-CCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTCACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCT-AAAAATCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTCACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAA-TCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAA--ACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTCACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAAT---CCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAA--ACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTCACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAAT---CCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTCACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAATCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCC-TTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCCTTTCCCTTGGACATGGCGGGATTTGCGA-TGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGG-CCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCCTTTCCCTTGGACATGGCGGGATTTGCGA-TGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCCTTTCCCTTGGACATGGCGGGATTTGCGATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGG-CCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCCTTTCCCTTGGACATGGCGGGATTTGC-GATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGG-CCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCCTTTCCCTTGGACATGGCGGGATTTGCGA-TGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCCTTTCCCTTGGACATGGCGGGATTTGCGATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCCTTTCCCTTGGACATGGCGGGATTTGCGATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCCTTTCCCTTGGACATGGCGGGATTTGCGATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat #### BC049760_ID1437_2 --> 0 - 2 Original Alignment CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACT-GTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTCGTTACATTCCTGTTCACACTCCTAAACACAC-AGTGCCAATAGATGATGAGACAacgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from CESAR CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACT-GTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTCGTTACATTCCTGTTCACACTCCTAAACACAC-AGTGCCAATAGATGATGAGACAacgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Spaln_aa2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTCGTTACATTCCTGTTCACACTCCTAAACACACAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Spaln_nt2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACT-GTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTCGTTACATTCCTGTTCACACTCCTAAACACACA-GTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Pairagon CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACT-GTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTCGTTACATTCCTGTTCACACTCCTAAACAC-ACAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Exonerate_protein2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTCGTTACATTCCTGTTCACACTCCTAAACACACAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Exonerate_coding2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTCGTTACATTCCTGTTCACACTCCTAAACACACAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from GeneWise CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTCGTTACATTCCTGTTCACACTCCTAAACACACAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGACTCAGT-TACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTCTACCCACTGGAAACCTTTGTGGAGAGTCTCA-TAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from CESAR GTTCCCTTGCTGGTACCAGGACTCAGT-TACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTCTACCCACTGGAAACCTTTGTGGAGAGTCTC-ATAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTCTACCCACTGGAAACCTTTGTGGAGAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGACTCAGT-TACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTCTACCCACTGGAAACCTTTGTGGAGAGTCTCA-TAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Pairagon GTTCCCTTGCTGGTACCAGGACTCAGT-TACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTCTACCCACTGGAAACCTTTGTGGAGAGTCTCA-TAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTCTACCCACTGGAAACCTTTGTGGAGAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTCTACCCACTGGAAACCTTTGTGGAGAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTCTACCCACTGGAAACCTTTGTGGAGAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTC-CTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCCTGGAAGGCATGAGGCCGCCGCTAGAAATCT-TACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTG---------GAAGTA---------GAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTT---ACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTTACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCC-TGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCCTGGAAGGCATGAGGCCGCCGCTAGAAATCT-TACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCT-CCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCCTGGAAGGCATGAGGCCGCCGCTAGAAATCT-TACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTC acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCcctggaaggcatgaggccgccgctagaaatcttactgactatagggagaattcagtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGAC--ACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAGTAGAA acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTT--ATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCCTGGAAGGCATgaggccgccgctagaaatcttactgactatagggagaattcagtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTC---------------CTGGAAGTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTTACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgcctgaactctcccctctgtctcagatttttgtatcttttctctagagGGCCAACTGTCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAG-GGAGGAGCAAGAGCCAGAGGCCAGTGATggtgagtgtagtatgttataggcaggggcactgtgtggtggggaggttact Alignment from CESAR agGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgcctgaactctcccctctgtctcagatttttgtatcttttctctagagGGCCAACTGTCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGA-GGGAGGAGCAAGAGCCAGAGGCCAGTGATggtgagtgtagtatgttataggcaggggcactgtgtggtggggaggttact Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgcctgaactctcccctctgtctcagatttttgtatcttttctctagAGGGCCAACTGTCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtgagtgtagtatgttataggcaggggcactgtgtggtggggaggttact Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgcctgaactctcccctctgtctcagatttttgtatcttttctctagAGGGCCAACTGTCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAG-GGAGGAGCAAGAGCCAGAGGCCAGTGATGgtgagtgtagtatgttataggcaggggcactgtgtggtggggaggttact Alignment from Pairagon AGGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgcctgaactctcccctctgtctcagatttttgtatcttttctctagAGGGCCAACTGTCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAG-GGAGGAGCAAGAGCCAGAGGCCAGTGATGgtgagtgtagtatgttataggcaggggcactgtgtggtggggaggttact Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgcctgaactctcccctctgtctcagatttttgtatcttttctctagAGGGCCAACTGTCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtgagtgtagtatgttataggcaggggcactgtgtggtggggaggttact Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgcctgaactctcccctctgtctcagatttttgtatcttttctctagAGGGCCAACTGTCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtgagtgtagtatgttataggcaggggcactgtgtggtggggaggttact Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgcctgaactctcccctctgtctcagatttttgtatcttttctctagAGGGCCAACTGTCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtgagtgtagtatgttataggcaggggcactgtgtggtggggaggttact #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTC-AGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTG-GAATGTTCCTCCTGGCAAATTTGGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAaggtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from CESAR GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTC-AGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCT-GGAATGTTCCTCCTGGCAAATTTGGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAaggtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGGAATGTTCCTCCTGGCAAATTTGGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTT-CAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTG-GAATGTTCCTCCTGGCAAATTTGGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Pairagon GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTT-CAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTG-GAATGTTCCTCCTGGCAAATTTGGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGGAATGTTCCTCCTGGCAAATTTGGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGGAATGTTCCTCCTGGCAAATTTGGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from GeneWise GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAA-- cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGGAATGTTCCTCCTGGCAAATTTGGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATG-TTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtgagcttctattgttcatatggaccctaggttttattttttcacaatagcTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAGTCTCCTGGGATGGATGGAGAAATGCTTACAAAACATAAAATCTGGACTGCAAGCAG-TGATCGCTGGGACTCAACGGACtggtaaccgaatgcttcgtaccctggtatcccttggcaaatgatggctttaa Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATG-TTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtgagcttctattgttcatatggaccctaggttttattttttcacaatagcTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAGTCTCCTGGGATGGATGGAGAAATGCTTACAAAACATAAAATCTGGACTGCAAGCAG-TGATCGCTGGGACTCAACGGACtggtaaccgaatgcttcgtaccctggtatcccttggcaaatgatggctttaa Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTA-CAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaggttttattttttcacaatagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAGTCTCCTGGGATGGATGGAGAAATGCTTaCAAAACATAAAATCTGGACTGCAAGCAGT-GATCGCTGGGACTCAACGGACTGgtaaccgaatgcttcgtaccctggtatcccttggcaaatgatggctttaa Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATG-TTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaggttttattttttcacaatagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAGTCTCCTGGGATGGATGGAGAAATGCTTACAAAACATAAAATCTGGACTGCAAGCAGT-GATCGCTGGGACTCAACGGACTGgtaaccgaatgcttcgtaccctggtatcccttggcaaatgatggctttaa Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATG-TTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaggttttattttttcacaatagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAGTCTCCTGGGATGGATGGAGAAATGCTTACAAAACATAAAATCTGGACTGCAAGCAGT-GATCGCTGGGACTCAACGGACTGgtaaccgaatgcttcgtaccctggtatcccttggcaaatgatggctttaa Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaggttttattttttcacaatagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAGTCTCCTGGGATGGATGGAGAAATGCTTACAAAACATAAAATCTGGACTGCAAGCAGTGATCGCTGGGACTCAACGGACTGgtaaccgaatgcttcgtaccctggtatcccttggcaaatgatggctttaa Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaggttttattttttcacaatagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAGTCTCCTGGGATGGATGGAGAAATGCTTACAAAACATAAAATCTGGACTGCAAGCAGTGATCGCTGGGACTCAACGGACTGgtaaccgaatgcttcgtaccctggtatcccttggcaaatgatggctttaa Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaggttttattttttcacaatagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAGTCTCCTGGGATGGATGGAGAAATGCTTACAAAACATAAAATCTGGACTGCAAGCAGTGATCGCTGGGACTCAACGGACTGgtaaccgaatgcttcgtaccctggtatcccttggcaaatgatggctttaa #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGAT-TTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccaggcGGTGGAAAGGTCGATTTTGAAGTTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAG-AGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGAT-TTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccaggcGGTGGAAAGGTCGATTTTGAAGTTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACA-GAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGAT-TTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAG-AGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGAT-TTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAG-AGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGCAAGCTGGGTCTGGTGGAATTCAACATCC-ATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from CESAR CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGCAAGCTGGGTCTGGTGGAATTCAACATC-CATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Spaln_aa2Genome AGAT---GGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGCAAGCTGGGTCTGGTGGAATTCAACATCCA-TGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Spaln_nt2Genome CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGCAAGCTGGGTCTGGTGGAATTCAACATCC-ATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Pairagon CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGCAAGCTGGGTCTGGTGGAATTCAACATCC-ATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGCAAGCTGGGTCTGGTGGAATTCAACATCCATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGCAAGCTGGGTCTGGTGGAATTCAACATCCATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGCAAGCTGGGTCTGGTGGAATTCAACATCCATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTG-GCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGCGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGG-GCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTG-GCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGCGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTG-GGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGCGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTG-GCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGCGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGG-GCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGG---CCAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTG-GCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGCGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGG-GCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTG---GCCAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTG-GCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTG--GAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGCGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGG---CAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGC---TCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG--CGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGG-CAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGCGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg #### Carns1_ID386_6 --> 2 - 0 Original Alignment gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT-ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttaggaGGTCCTGCACCTGGCCCTGAGCTAGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATTCAGGGTG-CAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from CESAR gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT-ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttaggaGGTCCTGCACCTGGCCCTGAGCTAGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATTCAGGGT-GCAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Spaln_aa2Genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATTCAGGGTGCAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Spaln_nt2Genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT-ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATTCAGGGTG-CAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Pairagon GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCG-TATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATTCAGGGTG-CAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Exonerate_protein2genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATTCAGGGTGCAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Exonerate_coding2genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATTCAGGGTGCAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from GeneWise GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT---ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTGTGCACCATGTGTGCAGTGGTGTGTCAGAT---TCAGGGTGCAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTG-CGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACCAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGAT-GCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAggttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTG-CGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACCAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAG-GATGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAggttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACCAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCG-GGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACCAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGA-TGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTG-CGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACCAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGA-TGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTG-CGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGA--TTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACCAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATG---CTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTG-CGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGA--TTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACCAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATG---CTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACCAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGT-GGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTCGGGAAGGAGGGCCAGGAAACACTTGTGAAAG-GGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGT-GGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTCGGGAAGGAGGGCCAGGAAACACTTGTGAAA-GGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTCGGGAAGGAGGGCCAGGAAACACTTGTGAAAGGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGT-GGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTCGGGAAGGAGGGCCAGGAAACACTTGTGAAAG-GGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGT-GGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTCGGGAAGGAGGGCCAGGAAACACTTGTGAAAG-GGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTCGGGAAGGAGGGCCAGGAAACACTTGTGAAAGGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTCGGGAAGGAGGGCCAGGAAACACTTGTGAAAGGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTCGGGAAGGAGGGCCAGGAAACACTTGTGAAAGGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gacccatggacaaggcccttgattaatgtcttcttccccatcttctgcaggcTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTAGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGG-GGGTGGGGTTCAAAGCCCTggtaagtgtgtgctttaataccctaccttctcctacaaaaggggaagcccg Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gacccatggacaaggcccttgattaatgtcttcttccccatcttctgcaggcTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTAGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTG-GGGGTGGGGTTCAAAGCCCTggtaagtgtgtgctttaataccctaccttctcctacaaaaggggaagcccg Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaaggcccttgattaatgtcttcttccccatcttctgcagGCTGCCCTGGGGCAGAGGTGACCTTGcTGCATTCTAGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGG-GGTGGGGTTCAAAGCCCTGgtaagtgtgtgctttaataccctaccttctcctacaaaaggggaagcccg Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaaggcccttgattaatgtcttcttccccatcttctgcagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTAGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGG-GGGTGGGGTTCAAAGCCCTGgtaagtgtgtgctttaataccctaccttctcctacaaaaggggaagcccg Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaaggcccttgattaatgtcttcttccccatcttctgcagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTAGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGG-GGGTGGGGTTCAAAGCCCTGgtaagtgtgtgctttaataccctaccttctcctacaaaaggggaagcccg Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTG--GAGGGTGGGGTCCAGAGCCCTG gacccatggacaaggcccttgattaatgtcttcttccccatcttctgcagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTAGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGG---GGTGGGGTTCAAAGCCCTGgtaagtgtgtgctttaataccctaccttctcctacaaaaggggaagcccg Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTG---CATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaaggcccttgattaatgtcttcttccccatcttctgcagGCTGCCCTGGGGCAGAGGTGACCTTG--CTGCATTCTAGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGG-GGTGGGGTTCAAAGCCCTGgtaagtgtgtgctttaataccctaccttctcctacaaaaggggaagcccg Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaaggcccttgattaatgtcttcttccccatcttctgcagGCTGCCCTGGGGCAGAGGTGACCTTGCTGCATTCTAGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGGGGTGGGGTTCAAAGCCCTGgtaagtgtgtgctttaataccctaccttctcctacaaaaggggaagcccg #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTG-TTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag gggctttctttggtttgacaccatcctatctgattgttttgacttaacagacTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGCTTCCACATTCTCAAAGTCTTCAAAAGTATGA-GGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgagaagcactaccccactcatgttcttggagagctctcaatgaagaaa Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTG-TTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag gggctttctttggtttgacaccatcctatctgattgttttgacttaacagacTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGCTTCCACATTCTCAAAGTCTTCAAAAGTATGA-GGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgagaagcactaccccactcatgttcttggagagctctcaatgaagaaa Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG gggctttctttggtttgacaccatcctatctgattgttttgacttaacagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGCTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcactaccccactcatgttcttggagagctctcaatgaagaaa Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTG-TTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG gggctttctttggtttgacaccatcctatctgattgttttgacttaacagACTTTTTCATTATGGTCATGGCAC---TGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGCTTCCACATTCTCAAAGTCTTCAAAAGTATG-AGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcactaccccactcatgttcttggagagctctcaatgaagaaa Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTG-TTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG gggctttctttggtttgacaccatcctatctgattgttttgacttaacagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGCTTCCACATTCTCAAAGTCTTCAAAAGTATG-AGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcactaccccactcatgttcttggagagctctcaatgaagaaa Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG gggctttctttggtttgacaccatcctatctgattgttttgacttaacagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGCTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcactaccccactcatgttcttggagagctctcaatgaagaaa Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG gggctttctttggtttgacaccatcctatctgattgttttgacttaacagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGCTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcactaccccactcatgttcttggagagctctcaatgaagaaa Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG gggctttctttggtttgacaccatcctatctgattgttttgacttaacagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGCTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcactaccccactcatgttcttggagagctctcaatgaagaaa #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTT-ACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTCACCACACTCTTCACCCTGTTCACCATGCTCACCC-GGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTT-ACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTCACCACACTCTTCACCCTGTTCACCATGCTCACC-CGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTCACCACACTCTTCACCCTGTTCACCATGCTCACCCGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATC-TTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTCACCACACTCTTCACCCTGTTCACCATGCTCACCC-GGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTT-ACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTCACCACACTCTTCACCCTGTTCACCATGCTCACCC-GGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATC-TTTACCACACTCTTCACCCTGTTCACCATGCTCACC--CTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTCACCACACTCTTCACCCTGTTCACCATGCTCACCCG---GATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTAC---CACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTT--CACCACACTCTTCACCCTGTTCACCATGCTCACCCG-GATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTCACCACACTCTTCACCCTGTTCACCATGCTCACCCGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAG-CGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGG-CCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAggtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAG-CGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCCGGCGAAGTCTCAGTTCCCAGTTCCCT-GTGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAggtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAG-CGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCCGGCGAAGTCTCAGTTCCCAGTTCCCT-GTGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGC-ACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cctttttgccttctctttccttaaacttactgatgtgttcttgcctgcaggAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTCACAGAAAGTTTGGGGGGCCCTCTGGAGACAGAGCTGC-TGAAGGCAGGGAGGCTGATGGGACAggtaattttaagggtctaacagccaggatgtccctgtgccatgtctcacac Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGC-ACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cctttttgccttctctttccttaaacttactgatgtgttcttgcctgcaggAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTCACAGAAAGTTTGGGGGGCCCTCTGGAGACAGAGC-TGCTGAAGGCAGGGAGGCTGATGGGACAggtaattttaagggtctaacagccaggatgtccctgtgccatgtctcacac Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctttttgccttctctttccttaaacttactgatgtgttcttgcctgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTCACAGAAAGTTTGGGGGGCCCTCTGGAGACAGAGCTGCTGAAGGCAGGGAGGCTGATGGGACAGgtaattttaagggtctaacagccaggatgtccctgtgccatgtctcacac Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAG-CACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctttttgccttctctttccttaaacttactgatgtgttcttgcctgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTCACAGAAAGTTTGGGGGGCCCTCTGGAGACAGAGCTG-CTGAAGGCAGGGAGGCTGATGGGACAGgtaattttaagggtctaacagccaggatgtccctgtgccatgtctcacac Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAG-CACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctttttgccttctctttccttaaacttactgatgtgttcttgcctgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTCACAGAAAGTTTGGGGGGCCCTCTGGAGACAGAGCT-GCTGAAGGCAGGGAGGCTGATGGGACAGgtaattttaagggtctaacagccaggatgtccctgtgccatgtctcacac Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctttttgccttctctttccttaaacttactgatgtgttcttgcctgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTCACAGAAAGTTTGGGGGGCCCTCTGGAGACAGAGCTGCTGAAGGCAGGGAGGCTGATGGGACAGgtaattttaagggtctaacagccaggatgtccctgtgccatgtctcacac Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctttttgccttctctttccttaaacttactgatgtgttcttgcctgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTCACAGAAAGTTTGGGGGGCCCTCTGGAGACAGAGCTGCTGAAGGCAGGGAGGCTGATGGGACAGgtaattttaagggtctaacagccaggatgtccctgtgccatgtctcacac Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctttttgccttctctttccttaaacttactgatgtgttcttgcctgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTCACAGAAAGTTTGGGGGGCCCTCTGGAGACAGAGCTGCTGAAGGCAGGGAGGCTGATGGGACAGgtaattttaagggtctaacagccaggatgtccctgtgccatgtctcacac #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG-CTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagaGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTGAACGTGGGGAGCCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCAC-ACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG-CTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagaGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTGAACGTGGGGAGCCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCAC-ACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG-CTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTGAACGTGGGGAGcCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACA-CTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG-CTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTG------AGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTGAACGTGGGGAGCCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCAC-ACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG-CTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTGAACGTGGGGAGCCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCAC-ACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG-CTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCA-----CAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTGAACGTGGGGAGCCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAG-CTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCA-----CAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTGAACGTGGGGAGCCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTGAACGTGGGGAGCCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAG-GCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaagggataacagggctaacaactttagcttgcttttccgggtctgcagAATGCCACACTGGTGGCAGAGAAACGCGGCTCTGCAGGGCCAGCTGCAGCATCTCGAGG-ACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtatttatgagctgcggtgggaatgagccgcctggattccagcctactaa Alignment from CESAR AATGCCACACTGGTGGCTGAGAAG-GCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaagggataacagggctaacaactttagcttgcttttccgggtctgcagAATGCCACACTGGTGGCAGAGAAACGCGGCTCTGCAGGGCCAGCTGCAGCATCTCG-AGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtatttatgagctgcggtgggaatgagccgcctggattccagcctactaa Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaagggataacagggctaacaactttagcttgcttttccgggtctgcagAATGCCACACTGGTGGCAGAGAAACGCGGCTCTGCAGGGCCAGCTGCAGCATCTCGAGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtatttatgagctgcggtgggaatgagccgcctggattccagcctactaa Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAG-GCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaagggataacagggctaacaactttagcttgcttttccgggtctgcagAATGCCACACTGGTGGCAGAGAAACGCGGCTCTGCAGGGCCAGCTGCAGCATCTCGA-GGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtatttatgagctgcggtgggaatgagccgcctggattccagcctactaa Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAG-GCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaagggataacagggctaacaactttagcttgcttttccgggtctgcagAATGCCACACTGGTGGCAGAGAAACGCGGCTCTGCAGGGCCAGCTGCAGCATCTCGA-GGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtatttatgagctgcggtgggaatgagccgcctggattccagcctactaa Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaagggataacagggctaacaactttagcttgcttttccgggtctgcagAATGCCACACTGGTGGCAGAGAAACGCGGCTCTGCAGGGCCAGCTGCAGCATCTCGAGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtatttatgagctgcggtgggaatgagccgcctggattccagcctactaa Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaagggataacagggctaacaactttagcttgcttttccgggtctgcagAATGCCACACTGGTGGCAGAGAAACGCGGCTCTGCAGGGCCAGCTGCAGCATCTCGAGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtatttatgagctgcggtgggaatgagccgcctggattccagcctactaa Alignment from GeneWise AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaagggataacagggctaacaactttagcttgcttttccgggtctgcagAATGCCACACTGGTGGCAGAGAAACGCGGCTCTGCAGGGCCAGCTGCAGCATCTCGAGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtatttatgagctgcggtgggaatgagccgcctggattccagcctactaa #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGAC-CTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CCTT---GCTGGGGCACGACGGGCTGGCCCTTGGA-TGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG--CCTTGCT---GGGGCACGACGGGCTGGCCCTTGG-ATGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CCTTGCTGGGGCACGACGGGCTGGCCCTTGGATGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG--CCTTG---CTGGGGCACGACGGGCTGGCCCTTGGA-TGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG--CCTTG---CTGGGGCACGACGGGCTGGCCCTTGGA-TGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTGCCT---TGCTGGGGCACGACGGGCTGGCCCTTGGATGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTGCCT---TGCTGGGGCACGACGGGCTGGCCCTTGGATGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTGCCT---TGCTGGGGCACGACGGGCTGGCCCTTGGATGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAG-GAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctaggTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGCGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGC-GTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAG-GAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctaggTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGCGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTG-CGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAG-GAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGcGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCG-TTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAG-GAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGCGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGC-GTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Pairagon GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAG-GAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGCGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGC-GTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGCGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGCGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGCGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCC-AGGTTCCCCTGGGGAGggtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCAC-CCCAGGTTCCCCTGGGGAGggtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGcGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCA-GGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCA-CCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTG-GAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCA-CCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGCGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg #### Ccdc88b_ID1838_11 --> 0 - 0 Original Alignment GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAG-GAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcagcccctccaccaaggtacacgattttccccctcaaagGAGGAGCGGGTCCTGTCTGAAGCTGTAGAGGCCTCAACAGTCCTTCTTGAACGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGACTGC-TGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTGgtatgttgtcctgcatgatgcaagttgggcccaaggtttgacttttgtgg Alignment from CESAR GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAG-GAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcagcccctccaccaaggtacacgattttccccctcaaagGAGGAGCGGGTCCTGTCTGAAGCTGTAGAGGCCTCAACAGTCCTTCTTGAACGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGACTG-CTGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTGgtatgttgtcctgcatgatgcaagttgggcccaaggtttgacttttgtgg Alignment from Spaln_aa2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcagcccctccaccaaggtacacgattttccccctcaaagGAGGAGCGGGTCCTGTCTGAAGCTGTAGAGGCCTCAACAGTCCTTCTTGAACGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGACTGCTGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTGgtatgttgtcctgcatgatgcaagttgggcccaaggtttgacttttgtgg Alignment from Spaln_nt2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAG-GAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcagcccctccaccaaggtacacgattttccccctcaaagGAGGAGCGGGTCCTGTCTGAAGCTGTAGAGGCCTCAACAGTCCTTCTTGAACGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGACTGC-TGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTGgtatgttgtcctgcatgatgcaagttgggcccaaggtttgacttttgtgg Alignment from Pairagon GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAG-GAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcagcccctccaccaaggtacacgattttccccctcaaagGAGGAGCGGGTCCTGTCTGAAGCTGTAGAGGCCTCAACAGTCCTTCTTGAACGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGACTGC-TGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTGgtatgttgtcctgcatgatgcaagttgggcccaaggtttgacttttgtgg Alignment from Exonerate_protein2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcagcccctccaccaaggtacacgattttccccctcaaagGAGGAGCGGGTCCTGTCTGAAGCTGTAGAGGCCTCAACAGTCCTTCTTGAACGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGACTGCTGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTGgtatgttgtcctgcatgatgcaagttgggcccaaggtttgacttttgtgg Alignment from Exonerate_coding2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcagcccctccaccaaggtacacgattttccccctcaaagGAGGAGCGGGTCCTGTCTGAAGCTGTAGAGGCCTCAACAGTCCTTCTTGAACGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGACTGCTGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTGgtatgttgtcctgcatgatgcaagttgggcccaaggtttgacttttgtgg Alignment from GeneWise GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcagcccctccaccaaggtacacgattttccccctcaaagGAGGAGCGGGTCCTGTCTGAAGCTGTAGAGGCCTCAACAGTCCTTCTTGAACGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGACTGCTGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTGgtatgttgtcctgcatgatgcaagttgggcccaaggtttgacttttgtgg #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGAC-TCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagaGAAGAGAAGGCTGAGCAACTGCTAGACCTCCCACGCAGAGGTTCAG---TTGGATGCCG-AATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGAC-TCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagaGAAGAGAAGGCTGAGCAACTGCTAGACCTCCCACGCAGAGGTTCAG---TTGGATGCCG-AATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACCTCCCACGCAGA---GGTTCAGTTGGATGCCGAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGAC-TCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACCTCCCACGCAGAGGTTCAG---TTGGATGCCG-AATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGA-CTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACCTCCCACGCAGAGGTTCAG---TTGGATGCCG-AATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACCTCCCACGCAGA---GGTTCAGTTGGATGCCGAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Exonerate_coding2genome tgggcagattctgcagttggcagacatctttttcatatacattctttcagagaagagaaggctgagcaactgctagacctcccacgcagaggttcagttggatgccgaattcgaagacttcgccaggaggtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACCTCCCACGCAGA---GGTTCAGTTGGATGCCGAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAG-GTGCGAGCCCTTCTCAggtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from CESAR GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAG-GTGCGAGCCCTTCTCAggtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Spaln_aa2Genome GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAAGAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGcCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGTGCGAGCCCTTCT------CAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Spaln_nt2Genome GAGGAGCTACAGC-TGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTA-CAGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Pairagon GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTAC-AGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Exonerate_protein2genome GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Exonerate_coding2genome GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from GeneWise -CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAA ggcccagaagcacctattatgatatcttttaccccggctctttattgcaggaggagctacagCCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGTGCGAGCCCT---TCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGA-ATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagtGCTCCGAGTTCCCAAGGGGGACTTCGTCATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGA-CCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGA-ATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagtGCTCCGAGTTCCCAAGGGGGACTTCGTCATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGT-GGACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTCATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGA-ATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTCATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGG-ACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCG-AATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTCATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGG-ACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGA-ATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG--AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTCATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAC---CTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGA-ATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG--AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTCATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAC---CTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTCATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAC-CTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGA-ACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGACACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGG-TCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTatgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGA-ACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGACACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGG-GTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTatgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGACACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGA-ACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGACACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGA-GGGGGTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGA-ACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGACACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGG-TCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGACACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAAC---AGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGA--CACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGT-CTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGACACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCA-TGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTC-ATGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCATGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTC-TGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCA-TGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCG-TCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCA-TGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCATGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCATGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from GeneWise -------------------------------------------------GATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT TGACGACTTAAGTGTTTCATTGTTGAGAACCCCTATTCTGCCTATTCCAGATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCATGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc #### Cd6_ID3012_12 --> 2 - 1 Original Alignment ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagggCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCGG-AGAGCAGTTTGAATGTCCAggtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from CESAR ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagggCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCG-GAGAGCAGTTTGAATGTCCAggtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Spaln_aa2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGcTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCGGA-GAGCAGTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Spaln_nt2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACC-GGAGAGCAGTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Pairagon GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACC-GGAGAGCAGTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Exonerate_protein2genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAG-TGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCA--GCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCGGA---GAGCAGTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --GGGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGA-GAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagCAGGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGCTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCGGA-GAGCAGTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATC-CTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagaGATGTGAAGCCAGACAACATTCCTGCTGGACATGAATGGACAGCTTTGCCTTG-TGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from CESAR gGATGTGAAGCCTGACAACATC-CTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagaGATGTGAAGCCAGACAACATTCCTGCTGGACATGAATGGACAGCTTTGCCTTG-TGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCCTGCTGGACATGAATGGACAGCTTTGCCTTGTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATC-CTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCCTGCTGGACATGAATGGACAGCTTTGCCTTG-TGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Pairagon GGATGTGAAGCCTGACAACA-TCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCCTGCTGGACATGAATGGACAGCTTTGCCTTGT-GACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCCTGCTGGACATGAATGGACAGCTTTGCCTTGTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCCTGCTGGACATGAATGGACAGCTTTGCCTTGTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from GeneWise -AGGGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagAAGAGATGTGAAGCCAGACAACATTCCTGCTGGACATGAATGGACAGCTTTGCCTTGTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagagCCCCTGCATGGTCCATTACCAACCACAGGAGCTCGTGCAGCTTCAGAAAG-AGTTCAGGTTCTTCAGGAGAAACTGGCAggtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagagCCCCTGCATGGTCCATTACCAACCACAGGAGCTCGTGCAGCTTCAGAAAG-AGTTCAGGTTCTTCAGGAGAAACTGGCAggtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACCAACCACAGGAGCTCGTGCAGCTTCAGAAAGAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTAC-AGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACCAACCACAGGAGCTCGTGCAGCTTCAGAAAG-AGTTCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACCAACCACAGGAGCTCGTGCAGCTTCAGAAAG-AGTTCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACCAACCACAGGAGCTCGTGCAGCTTCAGAAAGAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACCAACCACAGGAGCTCGTGCAGCTTCAGAAAGAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACCAACCACAGGAGCTCGTGCAGCTTCAGAAAGAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGA-GAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgagcacttgtctctcctctgcagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGACGAGTCTGCTGCAGCAGGCCAGCTTCAGACCCTGA-TACTCAGCTTGAGGAGGCCTGGGTTGTCCGGAGGGAGgtaagaggtgagacattcgaagggtccagggcatcgggcaccccatgttg Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGA-GAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgagcacttgtctctcctctgcagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGACGAGTCTGCTGCAGCAGGCCAGCTTCAGACCC-TGATACTCAGCTTGAGGAGGCCTGGGTTGTCCGGAGGGAGgtaagaggtgagacattcgaagggtccagggcatcgggcaccccatgttg Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgagcacttgtctctcctctgcagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGACGAGTCTGCTGCAGCAGGCCAGCTTCAGACCCTGATACTCAGCTTGAGGAGGCCTGGGTTGTCCGGAGGGAGgtaagaggtgagacattcgaagggtccagggcatcgggcaccccatgttg Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGA-GAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgagcacttgtctctcctctgcagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGACGAGTCTGCTGCAGCAGGCCAGCTTCAGACCCTG-ATACTCAGCTTGAGGAGGCCTGGGTTGTCCGGAGGGAGgtaagaggtgagacattcgaagggtccagggcatcgggcaccccatgttg Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGA-GAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGA-ACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgagcacttgtctctcctctgcagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGACGAGTCTGCTGCAGCAGGCCAGCTTCAGACCCTGATACT--CAGCTTGAGGAGGCCTGGGTTGTCCGGAGGGAGgtaagaggtgagacattcgaagggtccagggcatcgggcaccccatgttg Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgagcacttgtctctcctctgcagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGACGAGTCTGCTGCAGCAGGCCAGCTTCAGACCCTGATACTCAGCTTGAGGAGGCCTGGGTTGTCCGGAGGGAGgtaagaggtgagacattcgaagggtccagggcatcgggcaccccatgttg Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgagcacttgtctctcctctgcagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGACGAGTCTGCTGCAGCAGGCCAGCTTCAGACCCTGATACTCAGCTTGAGGAGGCCTGGGTTGTCCGGAGGGAGgtaagaggtgagacattcgaagggtccagggcatcgggcaccccatgttg Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgagcacttgtctctcctctgcagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGACGAGTCTGCTGCAGCAGGCCAGCTTCAGACCCTGATACTCAGCTTGAGGAGGCCTGGGTTGTCCGGAGGGAGgtaagaggtgagacattcgaagggtccagggcatcgggcaccccatgttg #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTG-AGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGCAGGAAGGAAGTGGTGGCTCTGAGGGAGCAACTGGAGC-TGCCTGCAGCCAAgggtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTG-AGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGCAGGAAGGAAGTGGTGGCTCTGAGGGAGCAACTGGAG-CTGCCTGCAGCCAAgggtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTG-AGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGcAGGAAGGAAGTGGTGGCTCTGAGGGAGCAACTGGAGCT-GCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTG-AGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGCAGGAAGGAAGTGGTGGCTCTGAGGGAGCAACTGGAGC-TGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTG-AGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGG------------------------------------------------- aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGCAGGAAGGAAGTGGTGGCTCTGAGGGAGCAACTGGAGC-TGCCTGCAGCCAAGGGTAGGAACATGGTAGTTGCAGCCAGGAAGGGACAGGGCAAGGTCAGCCTG Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTG-AGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGCAGGAAGGAAGTGGTGGCTCTGAGGGAGCAACTGGAGCTGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTG-AGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGCAGGAAGGAAGTGGTGGCTCTGAGGGAGCAACTGGAGCTGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGCAGGAAGGAAGTGGTGGCTCTGAGGGAGCAACTGGAGCTGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagaATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTC-GGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from CESAR gATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagaATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTC-GGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAG---GAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGcGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGAGCAGGAGTGGGTGTgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTC-GGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTC-GGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGGCTG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGAGCAGGAGTGGGTGTgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GTGCCGCGGCCCTCA-GGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCACTGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCA-TGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from CESAR GTGCCGCGGCCCTCA-GGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCACTGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTC-ATGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Spaln_aa2Genome GTCGGTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCACTGC---GTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAT-GATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Spaln_nt2Genome GTGCCGCGGCCCTCAG-GTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCACTGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCA-TGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Pairagon -------------------------------------------------GGTGCCGCGGCCCTCAG-GTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTGTGGGAATGAGTGCCAGTCCAGCCCTTTCTTGGGGGTGGGGAAACAGGTGCGACAGCCATCACTGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCA-TGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Exonerate_protein2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCACTGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCATGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Exonerate_coding2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCACTGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCATGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from GeneWise --------------------------------------------------GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTGTGGGAATGAGTGCCAGTCCAGCCCTTTCTTGGGGGTGGGGAAACAGGTGCGACAGCCATCACTGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCATGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcaggGACCCCCAGTTTTCAGCCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCA-GGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from CESAR gGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcaggGACCCCCAGTTTTCAGCCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCA-GGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCcACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAG-GACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCA-GGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Pairagon GGACCCCCAGTTCTCAG-CCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCC-AGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGC---CACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTT--TCAGCCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAG-GACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt #### Cdc42bpg_ID1602_32 --> 0 - 1 Original Alignment GTGAGACCCCTGAATCCAGAAGGCTCC-TTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg ggctaggtgcagtgggtgacgcgggtggcagacagccccttaacctctagGTGAGACCCCTTAATCCAGAAGGCTCCCTTGTTCCTTTATGGCACCGAAAAACTCCGCCTGA-CTACCTCAGAAATCCATTGGCAggtaagggtacataacccccatctgtgcatattcacctgtgtacaagtgtg Alignment from CESAR GTGAGACCCCTGAATCCAGAAGGCTCC-TTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg ggctaggtgcagtgggtgacgcgggtggcagacagccccttaacctctagGTGAGACCCCTTAATCCAGAAGGCTCCCTTGTTCCTTTATGGCACCGAAAAACTCCGCCTGA-CTACCTCAGAAATCCATTGGCAggtaagggtacataacccccatctgtgcatattcacctgtgtacaagtgtg Alignment from Spaln_aa2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacgcgggtggcagacagccccttaacctctagGTGAGACCCCTTAATCCAGAAGGCTCCCTTGTTCCTTTATGGCACCGAAAAACTCCGCCTGACTACCTCAGAAATCCATTGGCAGgtaagggtacataacccccatctgtgcatattcacctgtgtacaagtgtg Alignment from Spaln_nt2Genome GTGAGACCCCTGAATCCAGAAGGCT-CCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacgcgggtggcagacagccccttaacctctagGTGAGACCCCTTAATCCAGAAGGCTCCCTTGTTCCTTTATGGCACCGAAAAACTCCGCCTGAC-TACCTCAGAAATCCATTGGCAGgtaagggtacataacccccatctgtgcatattcacctgtgtacaagtgtg Alignment from Pairagon GTGAGACCCCTGAATCCAGAAGGCT-CCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacgcgggtggcagacagccccttaacctctagGTGAGACCCCTTAATCCAGAAGGCTCCCTTGTTCCTTTATGGCACCGAAAAACTCCGCCTGA-CTACCTCAGAAATCCATTGGCAGgtaagggtacataacccccatctgtgcatattcacctgtgtacaagtgtg Alignment from Exonerate_protein2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacgcgggtggcagacagccccttaacctctagGTGAGACCCCTTAATCCAGAAGGCTCCCTTGTTCCTTTATGGCACCGAAAAACTCCGCCTGACTACCTCAGAAATCCATTGGCAGgtaagggtacataacccccatctgtgcatattcacctgtgtacaagtgtg Alignment from Exonerate_coding2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacgcgggtggcagacagccccttaacctctagGTGAGACCCCTTAATCCAGAAGGCTCCCTTGTTCCTTTATGGCACCGAAAAACTCCGCCTGACTACCTCAGAAATCCATTGGCAGgtaagggtacataacccccatctgtgcatattcacctgtgtacaagtgtg Alignment from GeneWise GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacgcgggtggcagacagccccttaacctctagGTGAGACCCCTTAATCCAGAAGGCTCCCTTGTTCCTTTATGGCACCGAAAAACTCCGCCTGACTACCTCAGAAATCCATTGGCAGgtaagggtacataacccccatctgtgcatattcacctgtgtacaagtgtg #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagaaAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGA-CAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from CESAR agAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagaaAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAG-ACAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACcCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAC-AAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACC-TCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGA-CAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGA-CCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGA-CAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGACAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGACAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGACAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAG-GACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG atgtgaagcctgtatgctggcccagcactttcacccttctgccctgttaggGAGATGCTGAAGCGACCCCTTTGTGCGCTTCAAATTCATCTCACCGCCCACCAACT-CATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtgagtcttgcgcaggtgattgcagaacatgccacagggttccaatcatt Alignment from CESAR gGAGATGCTGAAG-GACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG atgtgaagcctgtatgctggcccagcactttcacccttctgccctgttaggGAGATGCTGAAGCGACCCCTTTGTGCGCTTCAAATTCATCTCACCGCCCACCA-ACTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtgagtcttgcgcaggtgattgcagaacatgccacagggttccaatcatt Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG atgtgaagcctgtatgctggcccagcactttcacccttctgccctgttagGGAGATGCTGAAGCGACCCCTTTGTGCGCTTCAAATTCATCTCACCGCCCACCAACTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtgagtcttgcgcaggtgattgcagaacatgccacagggttccaatcatt Alignment from Spaln_nt2Genome GGAGATGCTGAAG-GACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG atgtgaagcctgtatgctggcccagcactttcacccttctgccctgttagGGAGATGCTGAAGCGACCCCTTTGTGCGCTTCAAATTCATCTCACCGCCCACCAAC-TCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtgagtcttgcgcaggtgattgcagaacatgccacagggttccaatcatt Alignment from Pairagon GGAGATGCTGAAG-GACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG atgtgaagcctgtatgctggcccagcactttcacccttctgccctgttagGGAGATGCTGAAGCGACCCCTTTGTGCGCTTCAAATTCATCTCACCGCCCACCAAC-TCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtgagtcttgcgcaggtgattgcagaacatgccacagggttccaatcatt Alignment from Exonerate_protein2genome GGAGATGCTGAAG-GACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAAC--CACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG atgtgaagcctgtatgctggcccagcactttcacccttctgccctgttagGGAGATGCTGAAGCGACCCCTTTGTGCGCTTCAAATTCATCTCACCGCCCACCAAC---TCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtgagtcttgcgcaggtgattgcagaacatgccacagggttccaatcatt Alignment from Exonerate_coding2genome GGAGATGCTGAAG-GACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAAC--CACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG atgtgaagcctgtatgctggcccagcactttcacccttctgccctgttagGGAGATGCTGAAGCGACCCCTTTGTGCGCTTCAAATTCATCTCACCGCCCACCAAC---TCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtgagtcttgcgcaggtgattgcagaacatgccacagggttccaatcatt Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG atgtgaagcctgtatgctggcccagcactttcacccttctgccctgttagggagatgctgaagC------------GACCCCTTTGTGCGCTTCAAATTCATCTCACCGCCCACCAACTCATC-CACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtgagtcttgcgcaggtgattgcagaacatgccacagggttccaatcatt #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCC-CACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtcggagctttacagtcccgtgctcatttcctctctcctgctagGCCCAAGAACAGAAGAGCAGTGGTGCCCGCAGCTCTGGGCCGCAGCGGCCTCCACAGCTTCTTAGAGGCATTGCGGCGGCCAGTGTCAACAG-CAGTGATGGTCTCCCAGGCCGAACAGACCCAtgtgagtatagggatagctctcactctgccagttcttgcatgcttcctctt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCC-CACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtcggagctttacagtcccgtgctcatttcctctctcctgctagGCCCAAGAACAGAAGAGCAGTGGTGCCCGCAGCTCTGGGCCGCAGCGGCCTCCACAGCTTCTTAGAGGCATTGCGGCGGCCAGTGTCAA-CAGCAGTGATGGTCTCCCAGGCCGAACAGACCCAtgtgagtatagggatagctctcactctgccagttcttgcatgcttcctctt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtcggagctttacagtcccgtgctcatttcctctctcctgctagGCCCAAGAACAGAAGAGCAGTGGTGCCCGCAGCTCTGGGCCGCAGCGGCCTCCACAGCTTCTTAGAGGCATTGCGGCGGCCAGTGTCAACAGCAGTGATGGTCTCCCAGGCCGAACAGACCCATgtgagtatagggatagctctcactctgccagttcttgcatgcttcctctt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCC-CCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtcggagctttacagtcccgtgctcatttcctctctcctgctagGCCCAAGAACAGAAGAGCAGTGGTGCCCGCAGCTCTGGGCCGCAGCGGCCTCCACAGCTTCTTAGAGGCATTGCGGCGGCCAGTGTCAAC-AGCAGTGATGGTCTCCCAGGCCGAACAGACCCATgtgagtatagggatagctctcactctgccagttcttgcatgcttcctctt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCC-CCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtcggagctttacagtcccgtgctcatttcctctctcctgctagGCCCAAGAACAGAAGAGCAGTGGTGCCCGCAGCTCTGGGCCGCAGCGGCCTCCACAGCTTCTTAGAGGCATTGCGGCGGCCAGTGTCAAC-AGCAGTGATGGTCTCCCAGGCCGAACAGACCCATgtgagtatagggatagctctcactctgccagttcttgcatgcttcctctt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtcggagctttacagtcccgtgctcatttcctctctcctgctagGCCCAAGAACAGAAGAGCAGTGGTGCCCGCAGCTCTGGGCCGCAGCGGCCTCCACAGCTTCTTAGAGGCATTGCGGCGGCCAGTGTCAACAGCAGTGATGGTCTCCCAGGCCGAACAGACCCATgtgagtatagggatagctctcactctgccagttcttgcatgcttcctctt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtcggagctttacagtcccgtgctcatttcctctctcctgctagGCCCAAGAACAGAAGAGCAGTGGTGCCCGCAGCTCTGGGCCGCAGCGGCCTCCACAGCTTCTTAGAGGCATTGCGGCGGCCAGTGTCAACAGCAGTGATGGTCTCCCAGGCCGAACAGACCCATgtgagtatagggatagctctcactctgccagttcttgcatgcttcctctt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtcggagctttacagtcccgtgctcatttcctctctcctgctagGCCCAAGAACAGAAGAGCAGTGGTGCCCGCAGCTCTGGGCCGCAGCGGCCTCCACAGCTTCTTAGAGGCATTGCGGCGGCCAGTGTCAACAGCAGTGATGGTCTCCCAGGCCGAACAGACCCATgtgagtatagggatagctctcactctgccagttcttgcatgcttcctctt #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCG-CCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcgcaccctggttttttccttttgttaatccagctGGAAGTGTCCCATTGCCCATCGGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCAC-ATTTAATGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtaagactgaccaagagcttgctcatggccagagggacggggcccccatt Alignment from CESAR ccGGGAGTGTCCCATCG-CCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcgcaccctggttttttccttttgttaatccagctGGAAGTGTCCCATTGCCCATCGGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCA-CATTTAATGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtaagactgaccaagagcttgctcatggccagagggacggggcccccatt Alignment from Spaln_aa2Genome CCGGGAGTGTCCCA-TCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcgcaccctggttttttccttttgttaatccagCTGGAAGTGTCCCAtTGCCCATCGGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACA-TTTAATGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtaagactgaccaagagcttgctcatggccagagggacggggcccccatt Alignment from Spaln_nt2Genome CCGGGAGTGTCCCATCGCC-ATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcgcaccctggttttttccttttgttaatccagCTGGAAGTGTCCCATTGCCCATCGGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCAC-ATTTAATGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtaagactgaccaagagcttgctcatggccagagggacggggcccccatt Alignment from Pairagon CCGGGAGTGTCCCATCG-CCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcgcaccctggttttttccttttgttaatccagCTGGAAGTGTCCCATTGCCCATCGGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCAC-ATTTAATGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtaagactgaccaagagcttgctcatggccagagggacggggcccccatt Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcgcaccctggttttttccttttgttaatccagCTGGAAGTGTCCCATTGCCCATCGGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACATTTAATGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtaagactgaccaagagcttgctcatggccagagggacggggcccccatt Alignment from Exonerate_coding2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcgcaccctggttttttccttttgttaatccagCTGGAAGTGTCCCATTGCCCATCGGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACATTTAATGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtaagactgaccaagagcttgctcatggccagagggacggggcccccatt Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcgcaccctggttttttccttttgttaatccagCTGGAAGTGTCCCATTGCCCATCGGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACATTTAATGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtaagactgaccaagagcttgctcatggccagagggacggggcccccatt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAG-GGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGCGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAG-GGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAG-GGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGCGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATA-GGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGCGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGG-GCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGCGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAG-GGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAG-GGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGCGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAG-GGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAG-GGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATA--GAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGCGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGG---GAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAG-GGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGCGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATA-GGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGCGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAACTCAACCTCTCTGGTGCACTTGTCTCTTGCAAATT-CCCAATTGGAGATGGAGGTTTAGAAagtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from CESAR GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAACTCAACCTCTCTGGTGCACTTGTCTCTTGCAAAT-TCCCAATTGGAGATGGAGGTTTAGAAagtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Spaln_aa2Genome GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAAcTCAACCTCTCTGGTGCACTTGTCTCTTGCAAATTC-CCAATTGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Spaln_nt2Genome GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAACTCAACCTCTCTGGTGCACTTGTCTCTTGCAAATT-CCCAATTGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Pairagon GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAACTCAACCTCTCTGGTGCACTTGTCTCTTGCAAATT-CCCAATTGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAACTCAACCTCTCTGGTGCACTTGTCTCTTGCAAATTCCCAATTGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAACTCAACCTCTCTGGTGCACTTGTCTCTTGCAAATTCCCAATTGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from GeneWise gttctcagtggggagatacctaatacctgacctttcttatacctttgcagggactgagtaaactcaacctctctggtgcacttgtctcttgcaaattcccaattggagatggaggtttagaaagtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCC-CTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcaggGCCCCTGAAAATGCACCCCCTAAAGAGCAAAATGATCTATGCAAGCTCCAAGG-TGCCATCAAGAGGAAGCTGACAggtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from CESAR gGCCCCCGAGAATGCA-CCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcaggGCCCCTGAAAATGCACCCCCTAAAGAGCAAAATGATCTATGCAAGCTCCAAG-GTGCCATCAAGAGGAAGCTGACAggtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCC-CTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCcCTAAAGAGCAAAATGATCTATGCAAGCTCCAAGGT-GCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCC-TCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCCTAAAGAGCAAAATGATCTATGCAAGCTCCAAGG-TGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Pairagon GGCCCCCGAGAATGCA-CCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCCTAAAGAGCAAAATGATCTATGCAAGCTCCAAGG-TGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCCTAAAGAGCAAAATGATCTATGCAAGCTCCAAGGTGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCCTAAAGAGCAAAATGATCTATGCAAGCTCCAAGGTGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCCTAAAGAGCAAAATGATCTATGCAAGCTCCAAGGTGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttacctcttactcattcttggatgtcaccctgactttcttcctttaaggtGACAGGGGCCCAGCTGGGCCACCGAGGCCCTCCAGGGCAACCTGGTCCCA-AGGGAACAAAGGAGAGAAGGGGGACAAAggtaagaagtggagtgtgattactggggtgctggggctcaggttctgaaaa Alignment from CESAR gtGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttacctcttactcattcttggatgtcaccctgactttcttcctttaaggtGACAGGGGCCCAGCTGGGCCACCGAGGCCCTCCAGGGCAACCTGGTCCCA-AGGGAACAAAGGAGAGAAGGGGGACAAAggtaagaagtggagtgtgattactggggtgctggggctcaggttctgaaaa Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttacctcttactcattcttggatgtcaccctgactttcttcctttaagGTGACAGGGGCCCAGCTGGGCCACCGAGGCCCTCCAGGGCAACCTGGTCCCAAGGGAACAAAGGAGAGAAGGGGGACAAAGgtaagaagtggagtgtgattactggggtgctggggctcaggttctgaaaa Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCAC-GAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttacctcttactcattcttggatgtcaccctgactttcttcctttaagGTGACAGGGGCCCAGCTGGGCCACCGAGGCCCTCCAGGGCAACCTGGTCCCA-AGGGAACAAAGGAGAGAAGGGGGACAAAGgtaagaagtggagtgtgattactggggtgctggggctcaggttctgaaaa Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttacctcttactcattcttggatgtcaccctgactttcttcctttaagGTGACAGGGGCCCAGCTGGGCCACCGAGGCCCTCCAGGGCAACCTGGTCCCA-AGGGAACAAAGGAGAGAAGGGGGACAAAGgtaagaagtggagtgtgattactggggtgctggggctcaggttctgaaaa Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttacctcttactcattcttggatgtcaccctgactttcttcctttaagGTGACAGGGGCCCAGCTGGGCCACCGAGGCCCTCCAGGGCAACCTGGTCCCAAGGGAACAAAGGAGAGAAGGGGGACAAAGgtaagaagtggagtgtgattactggggtgctggggctcaggttctgaaaa Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttacctcttactcattcttggatgtcaccctgactttcttcctttaagGTGACAGGGGCCCAGCTGGGCCACCGAGGCCCTCCAGGGCAACCTGGTCCCAAGGGAACAAAGGAGAGAAGGGGGACAAAGgtaagaagtggagtgtgattactggggtgctggggctcaggttctgaaaa Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttacctcttactcattcttggatgtcaccctgactttcttcctttaagGTGACAGGGGCCCAGCTGGGCCACCGAGGCCCTCCAGGGCAACCTGGTCCCAAGGGAACAAAGGAGAGAAGGGGGACAAAGgtaagaagtggagtgtgattactggggtgctggggctcaggttctgaaaa #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccaggtGCTGGCATCAGCTTTGGACATCCTCGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCT-TGAAGAGTTACTGTCCATGCTCCAAggtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from CESAR gtTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccaggtGCTGGCATCAGCTTTGGACATCCTCGGCCCACCTGGACCTCCTGGACTACCTGGAACATCC-TTGAAGAGTTACTGTCCATGCTCCAAggtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTcGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTT-GAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGC-CCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTCGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCT-TGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Pairagon GTTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTCGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCT-TGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Exonerate_protein2genome GTTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCC--TACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTCGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTT---GAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Exonerate_coding2genome GTTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCC--TACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTCGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTT---GAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTCGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTTGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCC-GGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagacacattgggctcctcgattcattggttctgtgatttttcttaggaAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTAC-GTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCC-GGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagacacattgggctcctcgattcattggttctgtgatttttcttaggaAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTA-CGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCC-CGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTAC-GTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCC-CGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTA----TGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTC--------------ACTACGTCTGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCC-GGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAAC acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACGTCTGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCC-GGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAAC acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACGTCTGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCC-GGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACG-TCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAG-GGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt ttctggccgcaggcttgatcatgtcatcgctcttttcctttccttcccaggtGGCAATATCAGGACATATCTCCTAGGGGTTCAGCGGTCCCCCTGGACCCCCAGGCCCCCCTGGGC-TGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGtgtcagtccatgacaattcctatgttgttcccctcaatacctttggaggtc Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAG-GGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt ttctggccgcaggcttgatcatgtcatcgctcttttcctttccttcccaggtGGCAATATCAGGACATATCTCCTAGGGGTTCAGCGGTCCCCCTGGACCCCCAGGCCCCCCTG-GGCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGtgtcagtccatgacaattcctatgttgttcccctcaatacctttggaggtc Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttctggccgcaggcttgatcatgtcatcgctcttttcctttccttcccagGTGGCAATATCAGGACATATCTCCTAGGGGTTCAGCGGTCCCCCTGGACCCCCAGGCCCCCCTGGGCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtcagtccatgacaattcctatgttgttcccctcaatacctttggaggtc Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAG-GGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttctggccgcaggcttgatcatgtcatcgctcttttcctttccttcccagGTGGCAATATCAGGACATATCTCCTAGGGGTTCAGCGGTCCCCCTGGACCCCCAGGCCCCCCTGGG-CTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtcagtccatgacaattcctatgttgttcccctcaatacctttggaggtc Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAG-GGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttctggccgcaggcttgatcatgtcatcgctcttttcctttccttcccagGTGGCAATATCAGGACATATCTCCTAGGGGTTCAGCGGTCCCCCTGGACCCCCAGGCCCCCCTGGG-CTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtcagtccatgacaattcctatgttgttcccctcaatacctttggaggtc Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttctggccgcaggcttgatcatgtcatcgctcttttcctttccttcccagGTGGCAATATCAGGACATATCTCCTAGGGGTTCAGCGGTCCCCCTGGACCCCCAGGCCCCCCTGGGCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtcagtccatgacaattcctatgttgttcccctcaatacctttggaggtc Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttctggccgcaggcttgatcatgtcatcgctcttttcctttccttcccagGTGGCAATATCAGGACATATCTCCTAGGGGTTCAGCGGTCCCCCTGGACCCCCAGGCCCCCCTGGGCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtcagtccatgacaattcctatgttgttcccctcaatacctttggaggtc Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttctggccgcaggcttgatcatgtcatcgctcttttcctttccttcccagGTGGCAATATCAGGACATATCTCCTAGGGGTTCAGCGGTCCCCCTGGACCCCCAGGCCCCCCTGGGCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtcagtccatgacaattcctatgttgttcccctcaatacctttggaggtc #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGG-CCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagggGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACT-CATTGCAGAATACATGCAAagtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGG-CCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagggGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCAC-TCATTGCAGAATACATGCAAagtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTgGGCCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTC-ATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACT-CATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Pairagon GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGG-CCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACT-CATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCAC--TACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTC---ATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCAC--TACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTC---ATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from GeneWise GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTCATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACTGTGCCC-GGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg tgggttatgataccttcacaggacatgttctcctttgtttctatttatagagGGATCATCAACAATCACTGTGCCTCGGACCTCCAGGGCCTCCTGGTGCCATGG-TCCCCCGGGGCCTCCAGGGACACCTggtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from CESAR agGGATCATCAACAATCACTGTGCCC-GGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg tgggttatgataccttcacaggacatgttctcctttgtttctatttatagagGGATCATCAACAATCACTGTGCCTCGGACCTCCAGGGCCTCCTGGTGCCA-TGGTCCCCCGGGGCCTCCAGGGACACCTggtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTCGGACCTCCAGGGCCTCCTGGTGCCATGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCC-CGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTCGGACCTCCAGGGCCTCCTGGTGCCAT-GGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Pairagon AGGGATCATCAACAATCACTGTGCC-CGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTCGGACCTCCAGGGCCTCCTGGTGCCAT-GGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTCGGACCTCCAGGGCCTCCTGGTGCCATGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Exonerate_coding2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTCGGACCTCCAGGGCCTCCTGGTGCCATGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from GeneWise GGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagagGGATCATCAACAATCACTGTGCCTCGGACCTCCAGGGCCTCCTGGTGCCATGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagctTCCTTCTCAGAAGAGACACTGCAAAAAGGAGAAGCAGGCTGCATATGCTGCTG-CACCTGCCTCAAGGCAGATGTGAATggtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from CESAR ctTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagctTCCTTCTCAGAAGAGACACTGCAAAAAGGAGAAGCAGGCTGCATATGCTGCT-GCACCTGCCTCAAGGCAGATGTGAATggtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGCAAAAAGGAGAAGCAGGCTGCATATGCTGCTGCACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGCAAAAAGGAGAAGCAGGCTGCATATGCTGCTG-CACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTG-AAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGCAAAAAGGAGAAGCAGGCTGCATATGCTGCTG-CACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGCAAAAAGGAGAAGCAGGCTGCATATGCTGCTGCACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGCAAAAAGGAGAAGCAGGCTGCATATGCTGCTGCACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGCAAAAAGGAGAAGCAGGCTGCATATGCTGCTGCACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTAC-CCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGG-TATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from CESAR ACGGGCCGCATTGACAAGGCCTAC-CCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTG-GTATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGTATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGA-CAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGG-TATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Pairagon ACGGGCCGCATTGACAAGGC-CTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGG-TATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGTATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGTATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGTATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGC-AGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA actacaagtacgtgtctggctaattgaatctctgttccgaccctatccaggtTGCGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCCAGCCTCTTTTGCTCAGCCTGCAAGGACA-GAGCGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGC-AGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA actacaagtacgtgtctggctaattgaatctctgttccgaccctatccaggtTGCGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCCAGCCTCTTTTGCTCAGCCTGCAAGG-ACAGAGCGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA actacaagtacgtgtctggctaattgaatctctgttccgaccctatccagGTTGCGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCCAGCCTCTTTTGCTCAGCCTGCAAGGACAGAGCGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGG-CAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA actacaagtacgtgtctggctaattgaatctctgttccgaccctatccagGTTGCGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCCAGCCTCTTTTGCTCAGCCTGCAAGGAC-AGAGCGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGG-CAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA actacaagtacgtgtctggctaattgaatctctgttccgaccctatccagGTTGCGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCCAGCCTCTTTTGCTCAGCCTGCAAGGAC-AGAGCGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA actacaagtacgtgtctggctaattgaatctctgttccgaccctatccagGTTGCGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCCAGCCTCTTTTGCTCAGCCTGCAAGGACAGAGCGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA actacaagtacgtgtctggctaattgaatctctgttccgaccctatccagGTTGCGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCCAGCCTCTTTTGCTCAGCCTGCAAGGACAGAGCGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA actacaagtacgtgtctggctaattgaatctctgttccgaccctatccagGTTGCGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCCAGCCTCTTTTGCTCAGCCTGCAAGGACAGAGCGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCT-GACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCC-CATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from CESAR GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCT-GACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCCGATGGAAAGGTGTTCTCCACAGGTTTCAGC-CCATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Spaln_aa2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCCATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Spaln_nt2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCT-GACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCC-CATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Pairagon GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAG-CTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCC-CATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Exonerate_protein2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCCATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Exonerate_coding2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCCATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from GeneWise GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCCATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCCATGGCC-CTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTAC-GCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from CESAR GAAAACCTTGAGGAGCCCATGGCC-CTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTA-CGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Spaln_aa2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCCATGGC-CCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTAC-GCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Pairagon GAAAACCTTGAGGAGCCCATGGC-CCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTAC-GCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCCCATGGC---CCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATG--GCTCCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACG-CCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTC-TTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattataggTTGGAGGTGACACGCCGACTCCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGT-TGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from CESAR gTTCGAGGTGACGCGCCGACTC-TTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattataggTTGGAGGTGACACGCCGACTCCTTCCCACCCATCCCAGGGATCAGGGACAAGGTG-TTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACT-CTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGT-TGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Pairagon GTTCGAGGTGACGCGCCGACT-CTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGT-TGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from GeneWise gtggacacccaggtgcatgctactctgctctttaaacttatgtattataggttggaggtgacacgccgactccttcccacccatcccagggatcagggacaaggtgttgacgatgtgcgagtgaaccctgaggtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTC-CTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagatGCAGAGGACACGCGGGTGCCTGGTGCACTCCCTGTACGCAGTAACAGCCTGTGCAGTCCTGC-GTGCGCACTGGTGCTCGGAGTGACTTGCAGGaggtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTC-CTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagatGCAGAGGACACGCGGGTGCCTGGTGCACTCCCTGTACGCAGTAACAGCCTGTGCAGTCCTG-CGTGCGCACTGGTGCTCGGAGTGACTTGCAGGaggtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACTCCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCT-CCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACTCCCTGTACGCAGTAACAGCCTGTGCAGTCCTGC-GTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCT-CCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACTCCCTGTACGCAGTAACAGCCTGTGCAGTCCTGC-GTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACTCCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACTCCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACTCCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCC-CCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagagCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACT-TCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCC-CCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagagCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACT-TCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCC-CCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCcCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTTCAG-TTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGT-GGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTT-CAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCC-CGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTT-CAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTTCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTTCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGG-GCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCA aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTTCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAG-GCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg actttctataacctcattgccgactctggctgctttggttttccttccagaGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGCGCCTACTTAGTCGTAACTGGTCGGAGTGGGGCAGGGCCAG-GTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCggtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAG-GCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg actttctataacctcattgccgactctggctgctttggttttccttccagaGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGCGCCTACTTAGTCGTAACTGGTCGGAGTGGGGCAGGGCCA-GGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCggtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAG-GCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGcGCCTACTTAGTCGTAACTGGTCGGAGTGGGGCAGGGCCAGG-TGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAG-GCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGCGCCTACTTAGTCGTAACTGGTCGGAGTGGGGCAGGGCCAG-GTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAG-GCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGCGCCTACTTAGTCGTAACTGGTCGGAGTGGGGCAGGGCCAG-GTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAG-GCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGG--TTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGCGCCTACTTAGTCGTAACTGGTCGGAGTGGGGCAGGGCCA---GGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Exonerate_coding2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAG-GCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGG--TTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGCGCCTACTTAGTCGTAACTGGTCGGAGTGGGGCAGGGCCA---GGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGCGCCTACTTAGTCGTAACTGGTCGGAGTGGGGCAGGGCCAGGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac ggacagggtgtggtgaattccagtcaaggtccatctgctcctgtctccaggcACAGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGCATCCGAGCTTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGG-GCCAGCGGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtaacatgtgatctcaggccgggccttcatccatccatcacattgctact Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac ggacagggtgtggtgaattccagtcaaggtccatctgctcctgtctccaggcACAGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGCATCCGAGCTTCTCGCTTCCTTTCCTGTGCCTGGCGAG-AGGGCCAGCGGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtaacatgtgatctcaggccgggccttcatccatccatcacattgctact Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacagggtgtggtgaattccagtcaaggtccatctgctcctgtctccagGCACAGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGCATCCGAGCTTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaacatgtgatctcaggccgggccttcatccatccatcacattgctact Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacagggtgtggtgaattccagtcaaggtccatctgctcctgtctccagGCACAGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGCATCCGAGCTTCTCGCTTCCTTTCCTGTGCCTGGCGAGA-GGGCCAGCGGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaacatgtgatctcaggccgggccttcatccatccatcacattgctact Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacagggtgtggtgaattccagtcaaggtccatctgctcctgtctccagGCACAGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGCATCCGAGCTTCTCGCTTCCTTTCCTGTGCCTGGCGAGA-GGGCCAGCGGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaacatgtgatctcaggccgggccttcatccatccatcacattgctact Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGG--CGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacagggtgtggtgaattccagtcaaggtccatctgctcctgtctccagGCACAGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGCATCCGAGCTTCTCGCTTCCTTTCCTGTGCCTGGCGAGA---GGGCCAGCGGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaacatgtgatctcaggccgggccttcatccatccatcacattgctact Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAG-ATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGG--CGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacagggtgtggtgaattccagtcaaggtccatctgctcctgtctccagGCACAGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGCATCCGAGCTTCTCGCTTCCTTTCCTGTGCCTGGCGAGA---GGGCCAGCGGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaacatgtgatctcaggccgggccttcatccatccatcacattgctact Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacagggtgtggtgaattccagtcaaggtccatctgctcctgtctccagGCACAGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGCATCCGAGCTTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaacatgtgatctcaggccgggccttcatccatccatcacattgctact #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTC-AGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCCAGAAGGATGATGGCGCTGCACCATGGTGTAA-ACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTC-AGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCCAGAAGGATGATGGCGCTGCACCATGGTGTA-AACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCCAGAAGGATGATGGCGCTGCACCATGGTGTAAACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTT-CAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCCAGAAGGATGATGGCGCTGCACCATGGTGT-AAACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTT-CAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCCAGAAGGATGATGGCGCTGCACCATGGTGT-AAACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCCAGAAGGATGATGGCGCTGCACCATGGTGTAAACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCCAGAAGGATGATGGCGCTGCACCATGGTGTAAACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCCAGAAGGATGATGGCGCTGCACCATGGTGTAAACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACG-CTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagctCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGACACCTGACATGGGCCTGCGACACTGCTGCAGGGA-TGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACG-CTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagctCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGACACCTGACATGGGCCTGCGACACTGCTGCAG-GGATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGACACCTGACATGGGCCTGCGACACTGCTGCAGGGATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGC-TGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGAC------CTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGACACCTGACATGGGCCTGCGACACTGCTGCAGGG-ATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACG-CTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGACACCTGACATGGGCCTGCGACACTGCTGCAGGG-ATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACG-CTGACCTGGGCCTGCGACACCGCCGCGGGG-----AACGTCACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGACACCTGACATGGGCCTGCGACACTGCTGCAGGGATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACG-CTGACCTGGGCCTGCGACACCGCCGCGGGG-----AACGTCACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGACACCTGACATGGGCCTGCGACACTGCTGCAGGGATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGACACCTGACATGGGCCTGCGACACTGCTGCAGGGATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCT-CTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCCTGTTCTCCCTGGAAGCCACACTAGAGG-GCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from CESAR GCCGGCCAGGGCTCT-CTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCCTGTTCTCCCTGGAAGCCACACTAGAG-GGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Spaln_aa2Genome GGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcaggctggccagGGCTCTCCTGTTCTCCCTGGAAGCCACACTAGAGGG-CCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTC-TGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCCTGTTCTCCCTGGAAGCCACACTAGAGG-GCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Pairagon GCCGGCCAGGGCTCT-CTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCCTGTTCTCCCTGGAAGCCACACTAGAGG-GCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCCTGTTCTCCCTGGAAGCCACACTAGAGGGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCCTGTTCTCCCTGGAAGCCACACTAGAGGGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCCTGTTCTCCCTGGAAGCCACACTAGAGGGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAG-CTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGACTGTA-CCCAGTGAATGCCAGGGTCACAggtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAG-CTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGACTGTA-CCCAGTGAATGCCAGGGTCACAggtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAG-CTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCTTGAAGAAcCTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAC-CCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGC-TAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGACTGTA-CCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAG-CTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGACTGTA-CCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGACTGTACCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGACTGTACCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGACTGTACCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTAC-CTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagagGAAGAATTCCACACCATCTACCCTGATTCCCCTCTTACAGAAGGAGTCTG-CAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from CESAR agGAGGAATTCCACACCATCTAC-CTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagagGAAGAATTCCACACCATCTACCCTGATTCCCCTCTTACAGAAGGAGTCT-GCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAGGG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCCTGATTCCCCTCTTACAGAAGGAGTCTGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGGTgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTA-CCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCAC------TGAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCCTGATTCCCCTCTTACAGAAGGAGTCT-GCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Pairagon AGGAGGAATTCCACACCATCTA-CCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCAC------TGAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCCTGATTCCCCTCTTACAGAAGGAGTCT-GCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCCTGATTCCCCTCTTACAGAAGGAGTCTGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCCTGATTCCCCTCTTACAGAAGGAGTCTGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAGGG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCCTGATTCCCCTCTTACAGAAGGAGTCTGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGGTgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGAC-AAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaacccctccagagggtcccttggctctgttttctggttgtctagagCTCTCGGACTGTGGCCAAGGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCA-TGCCTATGCAGCCATAAAGAATCTGggtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from CESAR agCTCTTGGATTGTGAC-AAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaacccctccagagggtcccttggctctgttttctggttgtctagagCTCTCGGACTGTGGCCAAGGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCC-ATGCCTATGCAGCCATAAAGAATCTGggtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Spaln_aa2Genome AGCTCTTGGATTGT-GACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTgGCCAAGGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAT-GCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGAC-AAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCCAAGGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCC-ATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Pairagon AGCTCTTGGATTGTGA-CAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCCAAGGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCC-ATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCCAAGGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCCAAGGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCCAAGGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTC-TCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccaggaGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATGTTCAGACCTGTAACTTCCTCAGCACAGATGGCAAAAGTCTACATCA-TGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTC-TCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccaggaGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATGTTCAGACCTGTAACTTCCTCAGCACAGATGGCAAAAGTCTACATC-ATGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATGTTCAGACCTGTAACTTCCTCAGCACAGATGGCAAAAGTCTACATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTT-CTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATGTTCAGACCTGTAACTTCCTCAGCACAGATGGCAAAAGTCTACATCA-TGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTT-CTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATGTTCAGACCTGTAACTTCCTCAGCACAGATGGCAAAAGTCTACATC-ATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATGTTCAGACCTGTAACTTCCTCAGCACAGATGGCAAAAGTCTACATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATGTTCAGACCTGTAACTTCCTCAGCACAGATGGCAAAAGTCTACATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATGTTCAGACCTGTAACTTCCTCAGCACAGATGGCAAAAGTCTACATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCA-TGATCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from CESAR TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCA-TGATCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCAT-GATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Pairagon TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCAT-GATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATC--GACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGG---CTCATGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATT-GCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATC--GACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGG---CTCATGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTCGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGC-ATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAAC-TTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGC-ATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAA-CTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTG------CTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGC-ATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAAC-TTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTG------TCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGG-CATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAAC-TTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTG------GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAG-GATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg gagtgctcagcatggtaggttgcttgcttgtgaatgctttccccttttaggtGGTCTGGCCAGTGAAAAACGATTATCCATTCCAGGGGGACAGAAAGCCTC-CAGATGCCTGGCTAAGAAGTATAAGGAAGTGGCCTGGATCCAGGATTTCACCACATTGTCCAATAATGAGCAGggtaagtccagggtaaatcagaagggtgagcgcacacaacctggctggcta Alignment from CESAR gtGGCCTGGCCAGTGAAAAG-GATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg gagtgctcagcatggtaggttgcttgcttgtgaatgctttccccttttaggtGGTCTGGCCAGTGAAAAACGATTATCCATTCCAGGGGGACAGAAAGCCT-CCAGATGCCTGGCTAAGAAGTATAAGGAAGTGGCCTGGATCCAGGATTTCACCACATTGTCCAATAATGAGCAGggtaagtccagggtaaatcagaagggtgagcgcacacaacctggctggcta Alignment from Spaln_aa2Genome GTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgctcagcatggtaggttgcttgcttgtgaatgctttccccttttaggtggtctggccagTGAAAAACGATTATCCATTCCAGGGGGACAGAAAGCCTCC-AGATGCCTGGCTAAGAAGTATAAGGAAGTGGCCTGGATCCAGGATTTCACCACATTGTCCAATAATGAGCAGGgtaagtccagggtaaatcagaagggtgagcgcacacaacctggctggcta Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAG-GATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgctcagcatggtaggttgcttgcttgtgaatgctttccccttttagGTGGTCTGGCCAGTGAAAAACGATTATCCATTCCAGGGGGACAGAAAGCCTC-CAGATGCCTGGCTAAGAAGTATAAGGAAGTGGCCTGGATCCAGGATTTCACCACATTGTCCAATAATGAGCAGGgtaagtccagggtaaatcagaagggtgagcgcacacaacctggctggcta Alignment from Pairagon GTGGCCTGGCCAGTGAAAAG-GATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgctcagcatggtaggttgcttgcttgtgaatgctttccccttttagGTGGTCTGGCCAGTGAAAAACGATTATCCATTCCAGGGGGACAGAAAGCCTC-CAGATGCCTGGCTAAGAAGTATAAGGAAGTGGCCTGGATCCAGGATTTCACCACATTGTCCAATAATGAGCAGGgtaagtccagggtaaatcagaagggtgagcgcacacaacctggctggcta Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgctcagcatggtaggttgcttgcttgtgaatgctttccccttttagGTGGTCTGGCCAGTGAAAAACGATTATCCATTCCAGGGGGACAGAAAGCCTCCAGATGCCTGGCTAAGAAGTATAAGGAAGTGGCCTGGATCCAGGATTTCACCACATTGTCCAATAATGAGCAGGgtaagtccagggtaaatcagaagggtgagcgcacacaacctggctggcta Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgctcagcatggtaggttgcttgcttgtgaatgctttccccttttagGTGGTCTGGCCAGTGAAAAACGATTATCCATTCCAGGGGGACAGAAAGCCTCCAGATGCCTGGCTAAGAAGTATAAGGAAGTGGCCTGGATCCAGGATTTCACCACATTGTCCAATAATGAGCAGGgtaagtccagggtaaatcagaagggtgagcgcacacaacctggctggcta Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgctcagcatggtaggttgcttgcttgtgaatgctttccccttttagGTGGTCTGGCCAGTGAAAAACGATTATCCATTCCAGGGGGACAGAAAGCCTCCAGATGCCTGGCTAAGAAGTATAAGGAAGTGGCCTGGATCCAGGATTTCACCACATTGTCCAATAATGAGCAGGgtaagtccagggtaaatcagaagggtgagcgcacacaacctggctggcta #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAAC-ACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACCACATGGGGGGAGTCTGTACCTCGAACCTGTG-CTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatagtt Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAAC-ACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACCACATGGGGGGAGTCTGTACCTCGAACCTGT-GCTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactt Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACCACATGGGGGGAGTCTGTACCTCGAACCTGTGCTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatagtt Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAAC-ACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACCACATGGGGGGAGTCTGTACCTCGAACCTGTG-CTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatagtt Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAA-CACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACCACATGGGGGGAGTCTGTACCTCGAACCTGTG-CTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatagtt Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACCACATGGGGGGAGTCTGTACCTCGAACCTGTGCTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatagtt Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACCACATGGGGGGAGTCTGTACCTCGAACCTGTGCTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatagtt Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACCACATGGGGGGAGTCTGTACCTCGAACCTGTGCTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatagtt #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCT-CAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tagtagccacttcctgtctcaagactgataattattcttcattttttcagagTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAAGGCTACAGCAAGAAGACTTGG-TACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCagtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCT-CAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tagtagccacttcctgtctcaagactgataattattcttcattttttcagagTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAAGGCTACAGCAAGAAGACT-TGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCagtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAAGGCTACAGCAAGAAGACTTGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCT-CAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAAGGCTACAGCAAGAAGACTTGG-TACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCT-CAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAAGGCTACAGCAAGAAGACTT-GGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAAGGCTACAGCAAGAAGACTTGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAAGGCTACAGCAAGAAGACTTGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGAGGAGGAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAAGGCTACAGCAAGAAGACTTGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAGTGAGGAGgtgggtgatcggcagatgtacaagggaaatttcccaccagaa #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTC-ACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCCAGGGTTGGAGACATCTTA------GGCATAGAGACCA-TAGCTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACG-GTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCCAGGGTTGGAGACATCTTA------GGCATAGAGACC-ATAGCTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCCAGGGTTGGAGACATCTTAGGCATAGA------GACCATAGCTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTC-ACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCCAGGGTTGGAGACATCTT------AGGCATAGAGACCA-TAGCTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGT-CACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCCAGGGTTGGAGACATCTT------AGGCATAGAGACCA-TAGCTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCCAGGGTTGGAGACATCTTAGGCAT------AGAGACCATAGCTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCCAGGGTTGGAGACATCTT-----AGGCATAGAGACCAT-AGCTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCCAGGGTTGGAGACATCTTAGGCAT------AGAGACCATAGCTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGC-CGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCCGGCTTCAGGCAACAGAGCCAGATGGGGGTT-CAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from CESAR GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGC-CGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCCGGCTTCAGGCAACAGAGCCAGATGGGGGT-TCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Spaln_aa2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCCGGCTTCAGGCAACAGAGCCAGATGGGGGTTCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Spaln_nt2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCG-GCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTTA---CACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCCGGCTTCAGGCAACAGAGCCAGATGGGGGTT-CAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGA-AGGTGAGGAA--TTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Pairagon GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCG-CCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTTA---CACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCCGGCTTCAGGCAACAGAGCCAGATGGGGGTT-CAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGA-----------------------AGgtgaggaattggacacacaggtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Exonerate_protein2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCCGGCTTCAGGCAACAGAGCCAGATGGGGGTTCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Exonerate_coding2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCCGGCTTCAGGCAACAGAGCCAGATGGGGGTTCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from GeneWise GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCCGGCTTCAGGCAACAGAGCCAGATGGGGGTTCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGC-AAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCCAAGAGCAATCAGGACAACAAGTTGGACATGGAAA-TTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from CESAR GGCTTACTTTGC-AAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCCAAGAGCAATCAGGACAACAAGTTGGACATGG-AAATTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Spaln_aa2Genome GGCTTACTTTGC-AAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCcAAGAGCAATCAGGACAACAAGTTGGACATGGAAAT-TTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Spaln_nt2Genome GGCTTACTTTGC-AAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCCAAGAGCAATCAGGACAACAAGTTGGACATGGAAA-TTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Pairagon GGCTTACTTTG-CAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCCAAGAGCAATCAGGACAACAAGTTGGACATGGAAA-TTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCCAAGAGCAATCAGGACAACAAGTTGGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCCAAGAGCAATCAGGACAACAAGTTGGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCCAAGAGCAATCAGGACAACAAGTTGGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct #### Cyp2c37_ID7839_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGG-GAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCCAGGAGTTTGCTGGGAGGGGAAGCTTTCCAGTTT-TGATAAAGCCACCAATGGAATGggtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT--TATGGGCCAGGAGTTTGCTGGGAGGGGAAGCTTTCCAG-TTTTGATAAAGCCACCAATGGAATGggtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCCAGGAGTTTGCTGGGAGGGGAAGCTTTCCAGTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGG-AGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCCAGGAGTTTGCTGGGAGGGGAAGCTTTCCAG-TTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGG-GAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCCAGGAGTTTGCTGGGAGGGGAAGCTTTCCAG-TTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCCAGGAGTTTGCTGGGAGGGGAAGCTTTCCAGTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCCAGGAGTTTGCTGGGAGGGGAAGCTTTCCAGTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCCAGGAGTTTGCTGGGAGGGGAAGCTTTCCAGTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGG-AAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccaggcCTTACATTTAGTAAAGGAAATGTATGGCAGAAACACAAGGCGCTTCTCGCTCATGCCTT-GCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACTTAGGAAGACCAATtgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGG-AAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccaggcCTTACATTTAGTAAAGGAAATGTATGGCAGAAACACAAGGCGCTTCTCGCTCA-TGCCTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACTTAGGAAGACCAATtgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGCAGAAACACAAGGCGCTTCTCGCTCATGCCTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAA-AAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGCAGAAACACAAGGCGCTTCTCGCTCATG-CCTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGG-AAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGCAGAAACACAAGGCGCTTCTCGCTCATGCC-TTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGCAGAAACACAAGGCGCTTCTCGCTCATGCCTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGCAGAAACACAAGGCGCTTCTCGCTCATGCCTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGCAGAAACACAAGGCGCTTCTCGCTCATGCCTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtaaccagctcactctgttttacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGG-AGAACTTAGAAAGACTAATggtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtaaccagctcactctgttttacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGG-AGAACTTAGAAAGACTAATggtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAA---ACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTcGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGAACTTAGAAAGACTAATGGTCAgttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGA-GAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGA-GAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAAT ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAAT ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGC-ATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGGC- ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGAACTTAGAAAGACTAATGGTCAgttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATC-AAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGG-TTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATC-AAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAG-GTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTACATC-AAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATAcAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGT-TTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACAT-CAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGG-TTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACAT-CAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGG-TTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Exonerate_coding2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCACGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from CESAR CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCACGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAcGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGC-AGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCACGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Pairagon CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCACGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCACGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCACGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCACGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAAT-CTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg cttccttgccccttgcacaaggaggctgactgtcttttctttctttttaggcTCTTCAGTGGTGCTGATAGTGAACAACCCTGGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAG-TGATGCTGCCATACGTTTGCTTggtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAAT-CTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg cttccttgccccttgcacaaggaggctgactgtcttttctttctttttaggcTCTTCAGTGGTGCTGATAGTGAACAACCCTGGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAG-TGATGCTGCCATACGTTTGCTTggtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCCTGGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATC-TGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCCTGGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAG-TGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAA-TCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCCTGGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAG-TGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCCTGGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCCTGGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCCTGGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcaggtACCCTAGGTGTGAGCTTGCTCATCATGCAGTGTCCCTGGCGCCACACACA-CTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGggtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from CESAR gtACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcaggtACCCTAGGTGTGAGCTTGCTCATCATGCAGTGTCCCTGGCGCCACACACA-CTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGggtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGCTCATCATGCAGTGTCCCTGGCGCCACACACACTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGCTCATCATGCAGTGTCCCTGGCGCCACACACA-CTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Pairagon GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGCTCATCATGCAGTGTCCCTGGCGCCACACACA-CTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGCTCATCATGCAGTGTCCCTGGCGCCACACACACTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGCTCATCATGCAGTGTCCCTGGCGCCACACACACTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGCTCATCATGCAGTGTCCCTGGCGCCACACACACTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCC-CCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTC-TATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtaatcctactagtacttcaggttaaagccccagtaaggaggattgcctt Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCA-CTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCT-CTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtaatcctactagtacttcaggttaaagccccagtaagggtgttgtttgc Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCC-CCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCcCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCT-ATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggaggattgcctt Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCT-CCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTC-TATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggaggattgcctt Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCT-CCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTC-TATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggaggattgcctt Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCC-CCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCT--CGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCT---ATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggaggattgcctt Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACT---TTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCC--GCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCT-ATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggaggattgcctt Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCA---CTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCT---ATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggaggattgcctt #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCT-CTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag tagcagcttttgccctgttttctttcctctgaaatgtgtctttgcttcaggtTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCCTTTCTACCACCAACGTCTTTGCTTGCTCTG-CCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaagactcctttctgtgtcttaaggaggagtcactaactggagattact Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCT-CTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag tagcagcttttgccctgttttctttcctctgaaatgtgtctttgcttcaggtTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCCTTTCTACCACCAACGTCTTTGCTTGCTCT-GCCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaagactcctttctgtgtcttaaggaggagtcactaactggagattact Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG tagcagcttttgccctgttttctttcctctgaaatgtgtctttgcttcagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCCTTTCTACCACCAACGTCTTTGCTTGCTCTGCCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagactcctttctgtgtcttaaggaggagtcactaactggagattact Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCT-CTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG tagcagcttttgccctgttttctttcctctgaaatgtgtctttgcttcagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCCTTTCTACCACCAACGTCTTTGCTTGCTCTG-CCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagactcctttctgtgtcttaaggaggagtcactaactggagattact Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCT-CTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG tagcagcttttgccctgttttctttcctctgaaatgtgtctttgcttcagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCCTTTCTACCACCAACGTCTTTGCTTGCTCTG-CCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagactcctttctgtgtcttaaggaggagtcactaactggagattact Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG tagcagcttttgccctgttttctttcctctgaaatgtgtctttgcttcagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCCTTTCTACCACCAACGTCTTTGCTTGCTCTGCCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagactcctttctgtgtcttaaggaggagtcactaactggagattact Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG tagcagcttttgccctgttttctttcctctgaaatgtgtctttgcttcagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCCTTTCTACCACCAACGTCTTTGCTTGCTCTGCCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagactcctttctgtgtcttaaggaggagtcactaactggagattact Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG tagcagcttttgccctgttttctttcctctgaaatgtgtctttgcttcagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCCTTTCTACCACCAACGTCTTTGCTTGCTCTGCCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagactcctttctgtgtcttaaggaggagtcactaactggagattact #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTC-AATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg agggcctcttagggagaagggttctggaagccattattctttccttacagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGC-GAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTC-AATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg agggcctcttagggagaagggttctggaagccattattctttccttacagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATG-CGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGCGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGT-CAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCCAATGTGTTCTGCCATGGCTCCCTAGTTATGC-GAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Pairagon agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtccaatgtgttctgccatggctccctagttatgcgaatctgggtgaggcttccactcccacaacacagggatcagtgctttttggcacagtcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Exonerate_protein2genome agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtccaatgtgttctgccatggctccctagttatgcgaatctgggtgaggcttccactcccacaacacagggatcagtgctttttggcacagtcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Exonerate_coding2genome agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtccaatgtgttctgccatggctccctagttatgcgaatctgggtgaggcttccactcccacaacacagggatcagtgctttttggcacagtcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from GeneWise agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtccaatgtgttctgccatggctccctagttatgcgaatctgggtgaggcttccactcccacaacacagggatcagtgctttttggcacagtcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCC-GCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactcactgtatatttatccaccccacctcaggaATATGCATGCCCTCCGAGCATAGCCATTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTT-AAAGATCTATCATACCAAAggtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCC-GCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactcactgtatatttatccaccccacctcaggaATATGCATGCCCTCCGAGCATAGCCATTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCT-TAAAGATCTATCATACCAAAggtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATAGCCATTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGC-CGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATAGCCATTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTT-AAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGC-CGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATAGCCATTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTT-AAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATAGCCATTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATAGCCATTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATAGCCATTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac #### Dkk1_ID6483_2 --> 0 - 1 Original Alignment CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGT-CTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aggttgctaactaatctgatcctggtgtgtgtttgcttctctgtatatagCCATACCCTTGTGTTGTAGATGAGGAGTGCGGCTCTGATAAATACTGTTCCAGCCCCAGCCGTGGAGCAGCT---GTTGAAGGTGTACAGATCTGCCTTGGCTTGCCGAAAGCACAGGAAGCGTTGCATAAGGCATG-TATGTGCTGCCCTGGGAACCACTGCAAAAACagtatgtcttggcccccgttttaatttagtgccatcttgcctttgagaacc Alignment from CESAR CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGT-CTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aggttgctaactaatctgatcctggtgtgtgtttgcttctctgtatatagCCATACCCTTGTGTTGTAGATGAGGAGTGCGGCTCTGATAAATACTGTTCCAGCCCCAGCCGTGGAGCAGCT---GTTGAAGGTGTACAGATCTGCCTTGGCTTGCCGAAAGCACAGGAAGCGTTGCATAAGGCAT-GTATGTGCTGCCCTGGGAACCACTGCAAAAACagtatgtcttggcccccgttttaatttagtgccatcttgcctttgagaacc Alignment from Spaln_aa2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTG-GCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcctggtgtgtgtttgcttctctgtatatagCCATACCCTTGTGTTGTAGATGAGGAGTGCGGCTCTGATAAATACTGTTCCAGCCCCAGCCGTGGAGCAGCT---GTTGAAGGTGTACAGATCTGCCTTgGCTTGCCGAAAGCACAGGAAGCGTTGCATAAGGCATGT-ATGTGCTGCCCTGGGAACCACTGCAAAAACAgtatgtcttggcccccgttttaatttagtgccatcttgcctttgagaacc Alignment from Spaln_nt2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCT-GGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcctggtgtgtgtttgcttctctgtatatagCCATACCCTTGTGTTGTAGATGAGGAGTGCGGCTCTGATAAATACTGTTCCAGCCCCAGCCGTGGAGCAGC---TGTTGAAGGTGTACAGATCTGCCTTGGCTTGCCGAAAGCACAGGAAGCGTTGCATAAGGCATG-TATGTGCTGCCCTGGGAACCACTGCAAAAACAgtatgtcttggcccccgttttaatttagtgccatcttgcctttgagaacc Alignment from Pairagon CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTC-TGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcctggtgtgtgtttgcttctctgtatatagCCATACCCTTGTGTTGTAGATGAGGAGTGCGGCTCTGATAAATACTGTTCCAGCCCCAGCCGTGGAGCAGC---TGTTGAAGGTGTACAGATCTGCCTTGGCTTGCCGAAAGCACAGGAAGCGTTGCATAAGGCATG-TATGTGCTGCCCTGGGAACCACTGCAAAAACAgtatgtcttggcccccgttttaatttagtgccatcttgcctttgagaacc Alignment from Exonerate_protein2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcctggtgtgtgtttgcttctctgtatatagCCATACCCTTGTGTTGTAGATGAGGAGTGCGGCTCTGATAAATACTGTTCCAGCCCCAGCCGTGGAGCAGCT---GTTGAAGGTGTACAGATCTGCCTTGGCTTGCCGAAAGCACAGGAAGCGTTGCATAAGGCATGTATGTGCTGCCCTGGGAACCACTGCAAAAACAgtatgtcttggcccccgttttaatttagtgccatcttgcctttgagaacc Alignment from Exonerate_coding2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcctggtgtgtgtttgcttctctgtatatagCCATACCCTTGTGTTGTAGATGAGGAGTGCGGCTCTGATAAATACTGTTCCAGCCCCAGCCGTGGAGCAGCT---GTTGAAGGTGTACAGATCTGCCTTGGCTTGCCGAAAGCACAGGAAGCGTTGCATAAGGCATGTATGTGCTGCCCTGGGAACCACTGCAAAAACAgtatgtcttggcccccgttttaatttagtgccatcttgcctttgagaacc Alignment from GeneWise CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcctggtgtgtgtttgcttctctgtatatagCCATACCCTTGTGTTGTAGATGAGGAGTGCGGCTCTGATAAATACTGTTCCAGCCCCAGCCGTGGAGCAGCT---GTTGAAGGTGTACAGATCTGCCTTGGCTTGCCGAAAGCACAGGAAGCGTTGCATAAGGCATGTATGTGCTGCCCTGGGAACCACTGCAAAAACAgtatgtcttggcccccgttttaatttagtgccatcttgcctttgagaacc #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAA-GAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAACGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGG-GATGATGCGCCGTCGCATTCCAggtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAA-GAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAACGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGG-GGATGATGCGCCGTCGCATTCCAggtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Spaln_aa2Genome GGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCA gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAACGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAA-GAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAACGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGG-GATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAA-GAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAACGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGG-GATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAACGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGA---AGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTG--GAACGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGG-ATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAACGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg #### Dpf2_ID1304_9 --> 2 - 0 Original Alignment ggCATCCGTCCTGCCTGCAGTTCACC-CCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagggCCTCCATCCTGCCTGCAGTTCACCCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGC-GTGTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from CESAR ggCATCCGTCCTGCCTGCAGTTCACC-CCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagggCCTCCATCCTGCCTGCAGTTCACCCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGG-CGTGTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Spaln_aa2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCGTGTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Spaln_nt2Genome GGCATCCGTCCTGCCTGCAGTTCA-CCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGC-GTGTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Pairagon GGCATCCGTCCTGCCTGCAGTTCA-CCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGC-GTGTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Exonerate_protein2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCGTGTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Exonerate_coding2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCGTGTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from GeneWise GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCGTGTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTG-GCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tcttaatcactgctgctacttctgtcagataattttttttttaattttagacGATGACCTGAGACAAACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGCGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGG-GGAGGAAGACAAGgtatgggtggccccccaagcctagggcttaactactttagtctagaaagg Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTG-GCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tcttaatcactgctgctacttctgtcagataattttttttttaattttagacGATGACCTGAGACAAACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGCGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTG-GGGAGGAAGACAAGgtatgggtggccccccaagcctagggcttaactactttagtctagaaagg Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTG-GCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tcttaatcactgctgctacttctgtcagataattttttttttaattttagACGATGACCTGAGACAAACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGcGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGG-GAGGAAGACAAGgtatgggtggccccccaagcctagggcttaactactttagtctagaaagg Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTG-GCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tcttaatcactgctgctacttctgtcagataattttttttttaattttagACGATGACCTGAGACAAACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGCGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGG-GGAGGAAGACAAGgtatgggtggccccccaagcctagggcttaactactttagtctagaaagg Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTG-GCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tcttaatcactgctgctacttctgtcagataattttttttttaattttagACGATGACCTGAGACAAACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGCGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGG-GGAGGAAGACAAGgtatgggtggccccccaagcctagggcttaactactttagtctagaaagg Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tcttaatcactgctgctacttctgtcagataattttttttttaattttagACGATGACCTGAGACAAACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGCGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGGGAGGAAGACAAGgtatgggtggccccccaagcctagggcttaactactttagtctagaaagg Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tcttaatcactgctgctacttctgtcagataattttttttttaattttagACGATGACCTGAGACAAACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGCGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGGGAGGAAGACAAGgtatgggtggccccccaagcctagggcttaactactttagtctagaaagg Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tcttaatcactgctgctacttctgtcagataattttttttttaattttagACGATGACCTGAGACAAACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGCGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGGGAGGAAGACAAGgtatgggtggccccccaagcctagggcttaactactttagtctagaaagg #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTG-GCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGCGCCCAGTATGTGGAAAGCTTCACTCAGG-CTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCAGGACAAAGGCCCCATTGTAAAGaggtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTG-GCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGCGCCCAGTATGTGGAAAGCTTCACTC-AGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCAGGACAAAGGCCCCATTGTAAAGaggtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGCGCCCAGTATGTGGAAAGCTTCACTCAGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTG-GCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGCGCCCAGTATGTGGAAAGCTTCACTCA-GGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTG-GCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGCGCCCAGTATGTGGAAAGCTTCACTCA-GGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGCGCCCAGTATGTGGAAAGCTTCACTCAGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGCGCCCAGTATGTGGAAAGCTTCACTCAGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGCGCCCAGTATGTGGAAAGCTTCACTCAGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACC-TCCTGCCCACTTTCAGaggtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTC-ACCTCCTGCCCACTTTCAGaggtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAcGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCT-CCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCA-CCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCA-CCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Exonerate_coding2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCC-CTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCCTCCTGAAGAAGGCTTGCCAGGTGACCCAGT-TCGAAATGCAAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCC-CTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCCTCCTGAAGAAGGCTTGCCAGGTGACCCAG-TTCGAAATGCAAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCCTCCTGAAGAAGGCTTGCCAGGTGACCCAGTTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCC-TGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCCTCCTGAAGAAGGCTTGCCAGGTGACCCAGT-TCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGT-CCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCCTCCTGAAGAAGGCTTGCCAGGTGACCCAGT-TCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCCTCCTGAAGAAGGCTTGCCAGGTGACCCAGTTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCCTCCTGAAGAAGGCTTGCCAGGTGACCCAGTTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCCTCCTGAAGAAGGCTTGCCAGGTGACCCAGTTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTG-CGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagtaAGCAATGAGGAGCTGCCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGCAC-GTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from CESAR taAGCAATGAGGAGCTG-CGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagtaAGCAATGAGGAGCTGCCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGCA-CGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTG-CGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGcCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGCACG-TGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTG-CGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGCAC-GTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Pairagon TAAGCAATGAGGAGCTG-CGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGCAC-GTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGCACGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGCACGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGCACGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAG-CAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tggcttcttagaaggacagaagaagtcttttttttcaactctgtttgcagaaTGGCAGAAAACAGTTGCGCAGCAGCACCGTGAGCCAACTCCTGCTGGAGGAGCTTGTGTCCTTAG-GAACCAGAGGGAAGAGCTGGTCCGGGACCTGGACCAGAAGGAGCGGgtgtaagaacctgagtggctttggttttgaggaacccccagggtgcaagact Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAG-CAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tggcttcttagaaggacagaagaagtcttttttttcaactctgtttgcagaaTGGCAGAAAACAGTTGCGCAGCAGCACCGTGAGCCAACTCCTGCTGGAGGAGCTTGTGTCCTTA-GGAACCAGAGGGAAGAGCTGGTCCGGGACCTGGACCAGAAGGAGCGGgtgtaagaacctgagtggctttggttttgaggaacccccagggtgcaagact Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaaggacagaagaagtcttttttttcaactctgtttgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGTGAGCCAACTCCTGCTGGAGGAGCTTGTGTCCTTAGGAACCAGAGGGAAGAGCTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtaagaacctgagtggctttggttttgaggaacccccagggtgcaagact Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAG-CAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaaggacagaagaagtcttttttttcaactctgtttgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGTGAGCCAACTCCTGCTGGAGGAGCTTGTGTC-CTTAGGAACCAGAGGGAAGAGCTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtaagaacctgagtggctttggttttgaggaacccccagggtgcaagact Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAG-CAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaaggacagaagaagtcttttttttcaactctgtttgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGTGAGCCAACTCCTGCTGGAGGAGCTTGTGTCCTTAG-GAACCAGAGGGAAGAGCTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtaagaacctgagtggctttggttttgaggaacccccagggtgcaagact Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaaggacagaagaagtcttttttttcaactctgtttgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGTGAGCCAACTCCTGCTGGAGGAGCTTGTGTCCTTAGGAACCAGAGGGAAGAGCTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtaagaacctgagtggctttggttttgaggaacccccagggtgcaagact Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaaggacagaagaagtcttttttttcaactctgtttgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGTGAGCCAACTCCTGCTGGAGGAGCTTGTGTCCTTAGGAACCAGAGGGAAGAGCTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtaagaacctgagtggctttggttttgaggaacccccagggtgcaagact Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaaggacagaagaagtcttttttttcaactctgtttgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGTGAGCCAACTCCTGCTGGAGGAGCTTGTGTCCTTAGGAACCAGAGGGAAGAGCTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtaagaacctgagtggctttggttttgaggaacccccagggtgcaagact #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGAC-ACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACCACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGC-AGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAggtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from CESAR CAACGGTTCCAGGAC-ACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACCACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGC-AGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAggtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Spaln_aa2Genome CAACGGTTCCAGGAC-ACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACcACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAGAA-CAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Spaln_nt2Genome CAACGGTTCCAGGA-CACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACCACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCA-GAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Pairagon CAACGGTTCCAGGA-CACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACCACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCA-GAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACCACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Exonerate_coding2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACCACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACCACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGT-GTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTCGTCTGCATAACCAAGTTCACCACGTCCTGGC-CAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGT-GTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTCGTCTGCATAACCAAGTTCACCACGTCCTGG-CCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTCGTCTGCATAACCAAGTTCACCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGT-GTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTCGTCTGCATAACCAAGTTCACCACGTCCTGGC-CAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGT-GTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTCGTCTGCATAACCAAGTTCACCACGTCCTGGC-CAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTCGTCTGCATAACCAAGTTCACCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTCGTCTGCATAACCAAGTTCACCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTCGTCTGCATAACCAAGTTCACCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAG-CCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cataagaattcagcaatggtggggaatactcttgggctgttgtaactcagGCCCACAGCTGGCAGCCCTGGCATTCAGAATCCATACCTTGGCACTGCAG-ATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtaggtgcactgagcttggacatgggcaggcaccgcagagagctcatggg Alignment from CESAR GCCCACAGCTGGCAG-CCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cataagaattcagcaatggtggggaatactcttgggctgttgtaactcagGCCCACAGCTGGCAGCCCTGGCATTCAGAATCCATACCTTGGCACTGCA-GATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtaggtgcactgagcttggacatgggcaggcaccgcagagagctcatggg Alignment from Spaln_aa2Genome GCCCACAGCTGGCAG-CCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cataagaattcagcaatggtggggaatactcttgggctgttgtaactcagGCCCACAGCTGGCAGcCCTGGCATTCAGAATCCATACCTTGGCACTGCAGA-TGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtaggtgcactgagcttggacatgggcaggcaccgcagagagctcatggg Alignment from Spaln_nt2Genome GCCCACAGCTGGCAG-CCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cataagaattcagcaatggtggggaatactcttgggctgttgtaactcagGCCCACAGCTGGCAGCCCTGGCATTCAGAATCCATACCTTGGCACTGCAG-ATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtaggtgcactgagcttggacatgggcaggcaccgcagagagctcatggg Alignment from Pairagon GCCCACAGCTGGCAG-CCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cataagaattcagcaatggtggggaatactcttgggctgttgtaactcagGCCCACAGCTGGCAGCCCTGGCATTCAGAATCCATACCTTGGCACTGCAG-ATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtaggtgcactgagcttggacatgggcaggcaccgcagagagctcatggg Alignment from Exonerate_protein2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cataagaattcagcaatggtggggaatactcttgggctgttgtaactcagGCCCACAGCTGGCAGCCCTGGCATTCAGAATCCATACCTTGGCACTGCAGATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtaggtgcactgagcttggacatgggcaggcaccgcagagagctcatggg Alignment from Exonerate_coding2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cataagaattcagcaatggtggggaatactcttgggctgttgtaactcagGCCCACAGCTGGCAGCCCTGGCATTCAGAATCCATACCTTGGCACTGCAGATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtaggtgcactgagcttggacatgggcaggcaccgcagagagctcatggg Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cataagaattcagcaatggtggggaatactcttgggctgttgtaactcagGCCCACAGCTGGCAGCCCTGGCATTCAGAATCCATACCTTGGCACTGCAGATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtaggtgcactgagcttggacatgggcaggcaccgcagagagctcatggg #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTG-GAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGCGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCT-CAAATACCGCAAGAACATCTGGATCAAGAGAggtcagttccattcatagtattgagttatgtccttcactgcctccgacggt Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTG-GAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGCGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCT-CAAATACCGCAAGAACATCTGGATCAAGAGAggtcagttccattcatagtattgagttatgtccttcactgcctccgacgct Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTG-GAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGcGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTC-AAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacggt Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTG-GAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGCGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCT-CAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacggt Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTG-GAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGCGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCT-CAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacggt Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGCGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacggt Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGCGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacggt Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGCGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacggt #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAA-GTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagggGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAACGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATG-CCGCTCCCTACAGAAGGAGGGTCAAtggtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAA-GTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagggGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAACGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATG-CCGCTCCCTACAGAAGGAGGGTCAAtggtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAA-GTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAcGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGC-CGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAA-GTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAACGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGC-CGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAA-GTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAACGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATG-CCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAA-GTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCAT--GTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAACGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGC---CGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAA-GTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCAT--GTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAACGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGC---CGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAACGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta #### Eif3a_ID13316_14 --> 0 - 0 Original Alignment ATTGACTATTTTGAGAGAGCT-AAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGCAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATG-GGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from CESAR ATTGACTATTTTGAGAGAGCT-AAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGCAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATAT-GGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Spaln_aa2Genome ATTGACTATTTTGAGAGAGCT-AAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGcAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATGG-GAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Spaln_nt2Genome ATTGACTATTTTGAGAGAGCT-AAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGCAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATG-GGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Pairagon ATTGACTATTTTGAGAGAGC-TAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGCAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATG-GGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Exonerate_protein2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGCAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATGGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Exonerate_coding2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGCAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATGGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from GeneWise ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGCAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATGGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGAT-CCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctggtgcatcaaggtaagtatgagcctgttgaatcctgctccccagGATCTTGAAGAACTGGACCCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGG-AAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtgagagtgggtcattgataggttctaattctaaaccaaattggacctaa Alignment from CESAR GACCTTGAAGAACTGGATCCA-GATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctggtgcatcaaggtaagtatgagcctgttgaatcctgctccccagGATCTTGAAGAACTGGACCCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGG-AAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtgagagtgggtcattgataggttctaattctaaaccaaattggacctaa Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCA-GATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctggtgcatcaaggtaagtatgagcctgttgaatcctgctccccagGATCTTGAAGAACTGGACCCAaGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGAAAAAAAG-GAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtgagagtgggtcattgataggttctaattctaaaccaaattggacctaa Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCA-GATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctggtgcatcaaggtaagtatgagcctgttgaatcctgctccccagGATCTTGAAGAACTGGACCCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGA-AAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtgagagtgggtcattgataggttctaattctaaaccaaattggacctaa Alignment from Pairagon GACCTTGAAGAACTGGATCC-AGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctggtgcatcaaggtaagtatgagcctgttgaatcctgctccccagGATCTTGAAGAACTGGACCCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGA-AAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtgagagtgggtcattgataggttctaattctaaaccaaattggacctaa Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctggtgcatcaaggtaagtatgagcctgttgaatcctgctccccagGATCTTGAAGAACTGGACCCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtgagagtgggtcattgataggttctaattctaaaccaaattggacctaa Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctggtgcatcaaggtaagtatgagcctgttgaatcctgctccccagGATCTTGAAGAACTGGACCCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtgagagtgggtcattgataggttctaattctaaaccaaattggacctaa Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctggtgcatcaaggtaagtatgagcctgttgaatcctgctccccagGATCTTGAAGAACTGGACCCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtgagagtgggtcattgataggttctaattctaaaccaaattggacctaa #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTCTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAG-GCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTCTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCA-GGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTcTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGG-CTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTCTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAG-GCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTCTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAG-GCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCA--GTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTCTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGG---CTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCA--GTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTCTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGG---CTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTCTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGG-GCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag tgctgtgtctttcttagggtaaagattatctcttcaccatctctcaatagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGCGCATATTTGAAGTTAGCAGAGGAAAAAACAG-AGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgatgagtatcaaggcatttcttaccatgagacaatgttttacaccaac Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGG-GCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag tgctgtgtctttcttagggtaaagattatctcttcaccatctctcaatagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGCGCATATTTGAAGTTAGCAGAGGAAAAAACAG-AGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgatgagtatcaaggcatttcttaccatgagacaatgttttacaccaac Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG tgctgtgtctttcttagggtaaagattatctcttcaccatctctcaatagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGCGCATATTTGAAGTTAGCAGAGGAAAAAACAGAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgatgagtatcaaggcatttcttaccatgagacaatgttttacaccaac Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGG-GCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG tgctgtgtctttcttagggtaaagattatctcttcaccatctctcaatagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGCGCATATTTGAAGTTAGCAGAGGAAAAAACAG-AGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgatgagtatcaaggcatttcttaccatgagacaatgttttacaccaac Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGG-GCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG tgctgtgtctttcttagggtaaagattatctcttcaccatctctcaatagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGCGCATATTTGAAGTTAGCAGAGGAAAAAACAG-AGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgatgagtatcaaggcatttcttaccatgagacaatgttttacaccaac Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG tgctgtgtctttcttagggtaaagattatctcttcaccatctctcaatagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGCGCATATTTGAAGTTAGCAGAGGAAAAAACAGAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgatgagtatcaaggcatttcttaccatgagacaatgttttacaccaac Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG tgctgtgtctttcttagggtaaagattatctcttcaccatctctcaatagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGCGCATATTTGAAGTTAGCAGAGGAAAAAACAGAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgatgagtatcaaggcatttcttaccatgagacaatgttttacaccaac Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG tgctgtgtctttcttagggtaaagattatctcttcaccatctctcaatagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGCGCATATTTGAAGTTAGCAGAGGAAAAAACAGAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgatgagtatcaaggcatttcttaccatgagacaatgttttacaccaac #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACC-AGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac tacaattattctgccttactgggtattggacgtgtcctattcctccccagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACACAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCC-TTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACacgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACC-AGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac tacaattattctgccttactgggtattggacgtgtcctattcctccccagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACACAGAGGCACACAAACAAAAGAAGAGTTAGAGATTG-TCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACacgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACACAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGAC-CAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACACAGAGGCACACAAACAAAAGAAGAGTTAGAGATTG-TCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGAC-CAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACACAGAGGCACACAAACAAAAGAAGAGTTAGAGATTG-TCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACACAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACACAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACACAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTA-GTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccaattccttgccttcatctttttttcccctttcatttcagtTATGGGTACAGAGGTCATGACTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTACGTGGTACTGTACCGGCCTGGGGGAGGCCCAG-GGGACCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTtggtaagaatcttggtggggctgctgtatttagcacgaagagggtaggtctt Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTA-GTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccaattccttgccttcatctttttttcccctttcatttcagtTATGGGTACAGAGGTCATGACTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTACGTGGTACTGTACCGGCCTGGGGGAGGCCCAG-GGGACCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTtggtaagaatcttggtggggctgctgtatttagcacgaagagggtaggtctt Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattccttgccttcatctttttttcccctttcatttcagTTATGGGTACAGAGGTCATGACTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTACGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGACCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagaatcttggtggggctgctgtatttagcacgaagagggtaggtctt Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTA-GTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattccttgccttcatctttttttcccctttcatttcagTTATGGGTACAGAGGTCATGACTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTACGTGGTACTGTACCGGCCTGGGGGAGGCCCA-GGGGACCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagaatcttggtggggctgctgtatttagcacgaagagggtaggtctt Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTA-GTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattccttgccttcatctttttttcccctttcatttcagTTATGGGTACAGAGGTCATGACTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTACGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGA-CCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagaatcttggtggggctgctgtatttagcacgaagagggtaggtctt Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattccttgccttcatctttttttcccctttcatttcagTTATGGGTACAGAGGTCATGACTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTACGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGACCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagaatcttggtggggctgctgtatttagcacgaagagggtaggtctt Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattccttgccttcatctttttttcccctttcatttcagTTATGGGTACAGAGGTCATGACTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTACGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGACCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagaatcttggtggggctgctgtatttagcacgaagagggtaggtctt Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattccttgccttcatctttttttcccctttcatttcagTTATGGGTACAGAGGTCATGACTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTACGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGACCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagaatcttggtggggctgctgtatttagcacgaagagggtaggtctt #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTT-CATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCCATATCTGGGACTCAGAGACACTCCTGAAACTACAGG-AATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from CESAR CCCCTGCAGCCCGTGGTT-CATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCCATATCTGGGACTCAGAGACACTCCTGAAACTACAGG-AATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTT-CATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTcCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGA-ATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTT-CATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGA-ATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Pairagon CCCCTGCAGCCCGTGGTT-CATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGA-ATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTT-CATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAG--ATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAATT---GGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTT-CATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAG--ATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAATT---GGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTG-CTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGC-GTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTG-CTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCCTGAGTGGTGGTGGGTGGGATCGACGACTGGTG-CGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTG-CTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGC-GTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTG-CTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGC-GTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCT---GAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTG--CCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCG-TGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAG-AATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCT-CCCTGTTATCCAGgtacccattgtagcctttaaatttaaatatttatagGGACACACTGATGA Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAG-AATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCT-CCCTGTTATCCAGgtacccattgtagcttcccttcactctgagcagcagGGACACACTGATGA Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAG-AATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGcAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTC-CCTGTTATCCAGgtacccattgtagcctttaaatttaaatatttatagGGACACACTGATGA Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCAC-AAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCT-CCCTGTTATCCAGgtacccattgtagcctttaaatttaaatatttatagGGACACACTGATGA Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAG-AATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCT-CCCTGTTATCCAGgtacccattgtagcctttaaatttaaatatttatagGGACACACTGATGA Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCTGTTATCCAGgtacccattgtagcctttaaatttaaatatttatagGGACACACTGATGA Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCTGTTATCCAGgtacccattgtagcctttaaatttaaatatttatagGGACACACTGATGA Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGCAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCTGTTATCCAGgtacccattgtagcctttaaatttaaatatttatagGGACACACTGATGA #### Eml3_ID2516_15 --> 0 - 0 Original Alignment CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtattaattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGTGTACACATCCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGA-CATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from CESAR CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtacccattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGTGTACACATCCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGG-ACATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Spaln_aa2Genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtattaattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGTGTACACATCCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCcTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAC-ATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Spaln_nt2Genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCT-CTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtattaattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGTGTACACATCCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGA-CATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Pairagon CCCCTGTTATC------------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCT-CTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGGTATTAATTGTAGCTTCCCTTCACTCTGAGCAGCAGGGACACACTGATGAGCTCTGGGGATTGTGTACACATCCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGA-CATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Exonerate_protein2genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGG--AGCATGGACCTAAAG CCCCTGTTATCCAGgtattaattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGTGTACACATCCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAC---ATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Exonerate_coding2genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGG--AGCATGGACCTAAAG CCCCTGTTATCCAGgtattaattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGTGTACACATCCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAC---ATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from GeneWise CCCCTGTTATC------------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAG-CTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGGTATTAATTGTAGCTTCCCTTCACTCTGAGCAGCAGGGACACACTGATGAGCTCTGGGGATTGTGTACACATCCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAC-ATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAAC-ATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagatGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATCTACAGTGTTTCCAGTTGTGGTA-TAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAAC-ATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagatGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATCTACAGTGTTTCCAGTTGTGGT-ATAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATCTACAGTGTTTCCAGTTGTGGTATAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAA-CATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATCTACAGTGTTTCCAGTTGTGGTA-TAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAA-CATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATCTACAGTGTTTCCAGTTGTGGTA-TAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAAC-ATGATCTACATCTATAGTGTTTCCAGTTGTGGC--ACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATCTACAGTGTTTCCAGTTGTGGTAT---AAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAAC-ATGATCTACATCTATAGTGTTTCCAGTTGTGGC--ACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATCTACAGTGTTTCCAGTTGTGGTAT---AAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATCTACAGTGTTTCCAGTTGTGGTATAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGC-TTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCCTTCTATGCCCGCATCTTTTTTGCTTATATCTCAC-CCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTaggtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from CESAR GACTTGGCCTGGATGCTCAGC-TTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCCTTCTATGCCCGCATCTTTTTTGCTTATATCTCA-CCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTaggtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCCTTCTATGCCCGCATCTTTTTTGCTTATATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCT-TCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCCTTCTATGCCCGCATCTTTTTTGCTTATATCTCAC-CCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Pairagon GACTTGGCCTGGATGCTCAG-CTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCT-------------GGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCCTTCTATGCCCGCATCTTTTT--------------TGCTTATATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCCTTCTATGCCCGCATCTTTTTTGCTTATATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCCTTCTATGCCCGCATCTTTTTTGCTTATATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCCTTCTATGCCCGCATCTTTTTTGCTTATATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAAC-TGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttataggTTCCTGGAAAGCAACCTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCA-GCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from CESAR gTTCCTGGAAAGCAAC-TGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttataggTTCCTGGAAAGCAACCTGGTTTGTGTGGGTGACACAGATGAACCATATCTCC-AGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAAC-TGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACcTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCAG-CACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAA-CTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACCTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCA-GCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Pairagon GTTCCTGGAAAGCAA-CTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACCTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCA-GCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAAC-TGGTTTGTGTGGGTGACACAGATGAACCATATC--CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACCTGGTTTGTGTGGGTGACACAGATGAACCATATCTC---CAGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAAC-TGGTTTGTGTGGGTGACACAGATGAACCATATC--CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACCTGGTTTGTGTGGGTGACACAGATGAACCATATCTC---CAGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from GeneWise GTTCCTGGAAAGC-AACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACCTGGTTTGTGTGGGTGACACAGATGAACCATATCTC-CAGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGC-AACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCCAATGTTCACCAATCCGCCTTCAACAACTGGT-CAGTGGACACCTAAATTTCCAGATTGAACACcagtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from CESAR CTGCAGGCAACCTGC-AACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCCAATGTTCACCAATCCGCCTTCAACAACTGG-TCAGTGGACACCTAAATTTCCAGATTGAACACcagtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Spaln_aa2Genome CTGCAGGCAACCTGC-AACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCcAATGTTCACCAATCCGCCTTCAACAACTGGTC-AGTGGACACCTAAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Spaln_nt2Genome CTGCAGGCAACCTG-CAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCCAATGTTCACCAATCCGCCTTCAACAACTGG-TCAGTGGACACCTAAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Pairagon CTGCAGGCAACCTG-CAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCCAATGTTCACCAATCCGCCTTCAACAACTGG-TCAGTGGACACCTAAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCCAATGTTCACCAATCCGCCTTCAACAACTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCCAATGTTCACCAATCCGCCTTCAACAACTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCCAATGTTCACCAATCCGCCTTCAACAACTGGTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta agataagggatggacagggaagcaaaatatgtcccttctccatttcccagtGTCTTCCCCACAATGCCACGACACAACTACCACAAGCGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCA-CAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta agataagggatggacagggaagcaaaatatgtcccttctccatttcccagtGTCTTCCCCACAATGCCACGACACAACTACCACAAGCGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGC-ACAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCACGACACAACTACCACAAGCGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCACAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCACGACACAACTACCACAAGCGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCA-CAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCACGACACAACTACCACAAGCGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCA-CAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGC--ATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCACGACACAACTACCACAAGCGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCAC---AAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGC--ATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCACGACACAACTACCACAAGCGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCAC---AAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from GeneWise agataagggatggacagggaagcaaaatatgtcccttctccatttcccagtgtcttccccacaatgccacgacacaactaccacaagcgtgacaccactagtacaatccctgtgtgccaagtatggcacaagtatgagtctaaacccctgcttgcagcttttgcagacattgtttagtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCC-CGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTG-GACGCTACTTCTCTTTGTTGCTGTCaggtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCC-CGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTG-GACGCTACTTCTCTTTGTTGCTGTCaggtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCC-CGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCcCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGG-ACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCG-CTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACT-GGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTAC-TCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACT-GGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCAC-TGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgtgctaagtaccttgtcgtttcaggGTGCTGGAGAGCCACCTGGTTTGTGTGGATCACACAGATGAACCACA-CCCCAAGAAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtgagcactggtaagcctgatggaagaacatactagccatggagtgactg Alignment from CESAR gGTGCTGGAGAGCCAC-TGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgtgctaagtaccttgtcgtttcaggGTGCTGGAGAGCCACCTGGTTTGTGTGGATCACACAGATGAACCAC-ACCCCAAGAAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtgagcactggtaagcctgatggaagaacatactagccatggagtgactg Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCAC-TGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgtgctaagtaccttgtcgtttcagGGTGCTGGAGAGCCACcTGGTTTGTGTGGATCACACAGATGAACCACAC-CCCAAGAAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtgagcactggtaagcctgatggaagaacatactagccatggagtgactg Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCA-CTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgtgctaagtaccttgtcgtttcagGGTGCTGGAGAGCCACCTGGTTTGTGTGGATCACACAGATGAACCACA-CCCCAAGAAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtgagcactggtaagcctgatggaagaacatactagccatggagtgactg Alignment from Pairagon GGTGCTGGAGAGCCA-CTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgtgctaagtaccttgtcgtttcagGGTGCTGGAGAGCCACCTGGTTTGTGTGGATCACACAGATGAACCACA-CCCCAAGAAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtgagcactggtaagcctgatggaagaacatactagccatggagtgactg Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCAC-TGGTTCGTGTGGATCACGCAGATGAAC--CACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgtgctaagtaccttgtcgtttcagGGTGCTGGAGAGCCACCTGGTTTGTGTGGATCACACAGATGAACCACAC---CCCAAGAAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtgagcactggtaagcctgatggaagaacatactagccatggagtgactg Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCAC-TGGTTCGTGTGGATCACGCAGATGAAC--CACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgtgctaagtaccttgtcgtttcagGGTGCTGGAGAGCCACCTGGTTTGTGTGGATCACACAGATGAACCACAC---CCCAAGAAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtgagcactggtaagcctgatggaagaacatactagccatggagtgactg Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgtgctaagtaccttgtcgtttcagggtgctggagAGCCACC---------TGGTTTGTGTGGATCACACAGATGAACCACAC-CCCAAGAAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtgagcactggtaagcctgatggaagaacatactagccatggagtgactg #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTG-GGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTCGAACGAATCCAGCAACCACTACTCCCACATGTCAATG-GCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTG-GGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTCGAACGAATCCAGCAACCACTACTCCCACATGTCAAT-GGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTG-GGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTcGAACGAATCCAGCAACCACTACTCCCACATGTCAATGG-CACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGA-CGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTCGAACGAATCCAGCAACCACTACTCCCACATGTCAATG-GCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTC-TGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTCGAACGAATCCAGCAACCACTACTCCCACATGTCAATG-GCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTCGAACGAATCCAGCAACCACTACTCCCACATGTCAATGGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTCGAACGAATCCAGCAACCACTACTCCCACATGTCAATGGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTCGAACGAATCCAGCAACCACTACTCCCACATGTCAATGGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACC-TCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCT-AGACATTGAAACTGTGGAGGCAGTTAACTGGgggtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACC-TCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACC-CCTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCA-CCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGA-CCCCTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCA-CCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCC-TAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTC-GCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac tcattataccttgggtgttataagtttggttctgtgtctttcgctcatagACTGCTGCTGTTGCTCTTCGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGAAC-CCAGCTGATGCAGacgtacaggtcctctcgctttgcaggcaacaaaccatgctgtgtctctttct Alignment from CESAR ACTGCTGCTGTTGCTCTC-GCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac tcattataccttgggtgttataagtttggttctgtgtctttcgctcatagACTGCTGCTGTTGCTCTTCGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGAAC-CCAGCTGATGCAGacgtacaggtcctctcgctttgcaggcaacaaaccatgctgtacctcccttc Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTC-GCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC tcattataccttgggtgttataagtttggttctgtgtctttcgctcatagACTGCTGCTGTTGCTCTTcGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGAACC-CAGCTGATGCAGACgtacaggtcctctcgctttgcaggcaacaaaccatgctgtgtctctttct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTC-TCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC tcattataccttgggtgttataagtttggttctgtgtctttcgctcatagACTGCTGCTGTTGCTCTTCGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGAA-CCCAGCTGATGCAGACgtacaggtcctctcgctttgcaggcaacaaaccatgctgtgtctctttct Alignment from Pairagon ACTGCTGCTGTTGCTC-TCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC tcattataccttgggtgttataagtttggttctgtgtctttcgctcatagACTGCTGCTGTTGCTCTTCGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGAA-CCCAGCTGATGCAGACgtacaggtcctctcgctttgcaggcaacaaaccatgctgtgtctctttct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTC-GCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC tcattataccttgggtgttataagtttggttctgtgtctttcgctcatagACTGCTGCTGTTGCTCTTCGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGAACCCAGCTGATGCAGACGtacaggtcctctcgctttgcaggcaacaaaccatgctgtgtctctttct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTC-GCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC tcattataccttgggtgttataagtttggttctgtgtctttcgctcatagACTGCTGCTGTTGCTCTTCGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGAACCCAGCTGATGCAGACGtacaggtcctctcgctttgcaggcaacaaaccatgctgtgtctctttct Alignment from GeneWise --GTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGA tcattataccttgggtgttataagtttggttctgtgtctttcgctcatagactgctgctgttgctcttcgccaaagctatccacaaaaggttctttgttggtgttatggaacccagctgatgcagACGTACAGGTCCTCTCGCTTTGCAGGCAACAAACCATGCTGTGTCTCTTTCT #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATC-CTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTAATGGTTGTCTTCATACCTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTA-CAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATC-CTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTAATGGTTGTCTTCATACCTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATT-ACAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTAATGGTTGTCTTCATACCTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTACAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCAT-CCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTAATGGTTGTCTTCATACCTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTA-CAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCAT-CCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTAATGGTTGTCTTCATACCTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTA-CAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTAATGGTTGTCTTCATACCTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTACAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTAATGGTTGTCTTCATACCTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTACAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTAATGGTTGTCTTCATACCTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTACAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGC-ACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagaGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCCACCAGCCCAGACCATCCAAAAAACGATGGCA-GACAGAAGTGCATAAAGTGGTCAACaggtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGC-ACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagaGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCCACCAGCCCAGACCATCCAAAAAACGATG-GCAGACAGAAGTGCATAAAGTGGTCAACaggtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCCACCAGCCCAGACCATCCAAAAAACGATGGCAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCG-CACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCCACCAGCCCAGACCATCCAAAAAACGATGGC-AGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCG-CACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCCACCAGCCCAGACCATCCAAAAAACGATGGC-AGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCCACCAGCCCAGACCATCCAAAAAACGATGGCAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCCACCAGCCCAGACCATCCAAAAAACGATGGCAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCCACCAGCCCAGACCATCCAAAAAACGATGGCAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAG-AAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcataaaaaggaatttctggtccaaagattttcttctttttttaatataggGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGCAAAAGGCTGCAGCACCTGAGCTTTGGGGACT-TGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAG-AAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcataaaaaggaatttctggtccaaagattttcttctttttttaatataggGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGCAAAAGGCTGCAGCACCTGAGCTTTGGGG-ACTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGCAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAG-AAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGCAAAAGGCTGCAGCACCTGAGCTTTGGGGAC-TTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAG-AAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGCAAAAGGCTGCAGCACCTGAGCTTTGGGGAC-TTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGCAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGCAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGCAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGC-CTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTG-CACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGC-CTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCCTACCACAGAACCAGCCCTTTATTTTCTCCCTT-GCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAG-CCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCCTACCACAGAACCAGCCCTTTATTTTCTCCCTT-GCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAG-CCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCCTACCACAGAACCAGCCCTTTATTTTCTCCCTT-GCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGC---ACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGC---CCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATG-GAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGCGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGT-ACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATG-GAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGCGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAG-TACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGCGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATG-GAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGCGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGT-ACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATG-GAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGCGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGT-ACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGCGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGCGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGCGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAG-CCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCCAGGAGCCTGGGAGGAAACATTCAAAACAC-TTCTGACAGCAAGCCTTATggtacaagattgggcaagaccaaagagaagtgcctatcccctttttttctc Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAG-CCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCCAGGAGCCTGGGAGGAAACATTCAAAACA-CTTCTGACAGCAAGCCTTATggtacaagattgggcaagaccaaagagaagtgcagacgacctaatgtttct Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCCAGGAGCCTGGGAGGAAACATTCAAAACACTTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcctatcccctttttttctc Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGC-CAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCCAGGAGCCTGGGAGGAAACATTCAAAACACT-TCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcctatcccctttttttctc Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAG-CCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCCAGGAGCCTGGGAGGAAACATTCAAAACAC-TTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcctatcccctttttttctc Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCCAGGAGCCTGGGAGGAAACATTCAAAACACTTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcctatcccctttttttctc Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCCAGGAGCCTGGGAGGAAACATTCAAAACACTTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcctatcccctttttttctc Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTAT--------------------------------------------------- ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCCAGGAGCCTGGGAGGAAACATTCAAAACACTTCTGACAGCAAGCCTTATGGTACAAGATTGGGCAAGACCAAAGAGAAGTGCCTATCCCCTTTTTTTCTC #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCT-CTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga gggattgggcaagaccaaagagaagtgcagacgacctaatgtttctgcaggcCCCATGTCTGTTGGTTTGGACTTTTCTCCTGCCATGGATGGAACATGCATATGGGATCC-TGAGCATGCTGACAGCTTGAGACTGAAGGTCACTgagtaaatcctatgctaatgcaagggatagggttaacaaaggcagtctgggc Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCT-CTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga aagattgggcaagaccaaagagaagtgcagacgacctaatgtttctgcaggcCCCATGTCTGTTGGTTTGGACTTTTCTCCTGCCATGGATGGAACATGCATATGGGA-TCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTgagtaaatcctatgctaatgcaagggatagggttaacaaaggcagtctgggc Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gggattgggcaagaccaaagagaagtgcagacgacctaatgtttctgcagGCCCCATGTCTGTTGGTTTGGACTTTTCTCCTGCCATGGATGGAACATGCATATGGGATCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaatcctatgctaatgcaagggatagggttaacaaaggcagtctgggc Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTC-TGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gggattgggcaagaccaaagagaagtgcagacgacctaatgtttctgcagGCCCCATGTCTGTTGGTTTGGACTTTTCTCCTGCCATGGATGGAACATGCATATGGGAT-CCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaatcctatgctaatgcaagggatagggttaacaaaggcagtctgggc Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGACTTTTCT-CTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gggattgggcaagaccaaagagaagtgcagacgacctaatgtttctgcagGCCCCATGTCTGTTGGTTTGGACTTTTCTCCTGCCATGGATGGAACATGCATATGGGAT-CCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaatcctatgctaatgcaagggatagggttaacaaaggcagtctgggc Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gggattgggcaagaccaaagagaagtgcagacgacctaatgtttctgcagGCCCCATGTCTGTTGGTTTGGACTTTTCTCCTGCCATGGATGGAACATGCATATGGGATCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaatcctatgctaatgcaagggatagggttaacaaaggcagtctgggc Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gggattgggcaagaccaaagagaagtgcagacgacctaatgtttctgcagGCCCCATGTCTGTTGGTTTGGACTTTTCTCCTGCCATGGATGGAACATGCATATGGGATCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaatcctatgctaatgcaagggatagggttaacaaaggcagtctgggc Alignment from GeneWise -------------------------------------------------GGCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTG---TATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA GGGATTGGGCAAGACCAAAGAGAAGTGCAGACGACCTAATGTTTCTGCAGGCCCCATGTCTGTTGGTTTGGACTTTTCT---CCTGCCATGGATGGAACATGCATATGGGATCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaatcctatgctaatgcaagggatagggttaacaaaggcagtctgggc #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGAT-GCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATCGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCC-TAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGAT-GCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATCGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATC-CTAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGAT-GCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATcGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCT-AATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGAT-GCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATCGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCC-TAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGAT-GCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATCGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCC-TAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGAT-GCTGTGCATTATGGAGGCTGGGAGCACCGGGACATC--CATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATCGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCT---AATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGAT-GCTGTGCATTATGGAGGCTGGGAGCACCGGGACATC--CATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATCGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCT---AATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGAT-GCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATCGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCT-AATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGG-CTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatggcatatgttcttcccccatctctccctttctgcagCACATGGCAACTGCTGATGGGCCTAATACAGTGCTCAGGGGGCATAGAGCGTCCCTTTGTGC-GAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtaagctgtggaaactagagctgtagctttagtcacctggcctgtctaaa Alignment from CESAR CACATGGCGACTGCTGATGGG-CTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatggcatatgttcttcccccatctctccctttctgcagCACATGGCAACTGCTGATGGGCCTAATACAGTGCTCAGGGGGCATAGAGCGTCCCTTTGTG-CGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtaagctgtggaaactagagctgtagctttagtcacctggcctgtctaaa Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttcccccatctctccctttctgcagCACATGGCAACTGCTGATGGGCCTAATACAGTGCTCAGGGGGCATAGAGCGTCCCTTTGTGCGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaagctgtggaaactagagctgtagctttagtcacctggcctgtctaaa Alignment from Spaln_nt2Genome CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttcccccatctctccctttctgcagCACATGGCAACTGCTGATGGGCCTAATACAGTGCTCAGGGGGCATAGAGCGTCCCTTTGTGC-GAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaagctgtggaaactagagctgtagctttagtcacctggcctgtctaaa Alignment from Pairagon CACATGGCGACTGCTGATGGG-CTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttcccccatctctccctttctgcagCACATGGCAACTGCTGATGGGCCTAATACAGTGCTCAGGGGGCATAGAGCGTCCCTTTGTGC-GAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaagctgtggaaactagagctgtagctttagtcacctggcctgtctaaa Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttcccccatctctccctttctgcagCACATGGCAACTGCTGATGGGCCTAATACAGTGCTCAGGGGGCATAGAGCGTCCCTTTGTGCGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaagctgtggaaactagagctgtagctttagtcacctggcctgtctaaa Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttcccccatctctccctttctgcagCACATGGCAACTGCTGATGGGCCTAATACAGTGCTCAGGGGGCATAGAGCGTCCCTTTGTGCGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaagctgtggaaactagagctgtagctttagtcacctggcctgtctaaa Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttcccccatctctccctttctgcagCACATGGCAACTGCTGATGGGCCTAATACAGTGCTCAGGGGGCATAGAGCGTCCCTTTGTGCGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaagctgtggaaactagagctgtagctttagtcacctggcctgtctaaa #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCCTGG-ACTGGTGGGGCTTTCCTTCTGTGGAggcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCCTG-GACTGGTGGGGCTTTCCTTCTGTGGAggcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCCTGGACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCCTGG-ACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCCTGG-ACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCCTGGACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCCTGGACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCT gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCCTGGACTGGTGGGGCTTTCCTTCTgtggaggcaagtgaaggagacatttggggtattgcattggacatttggggttttgt #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccaggtGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATT-GCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from CESAR gtGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccaggtGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTT-ATTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTcGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATTG-CCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATT-GCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Pairagon GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTA-TTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTG ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATTGCCTGGccaagaagaagtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTG ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATTGCCTGGccaagaagaagtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCT-GTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from CESAR GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGCAGCTATCAGAAACATCATGGGCCCCAAA-CCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGcAGCTATCAGAAACATCATGGGCCCCAAAC-CTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACC-TGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Pairagon GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACC-TGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTG-GAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from CESAR ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGT-GGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Spaln_aa2Genome ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCcCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGG-AGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Spaln_nt2Genome ATCCCCGTGTTCC-AGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTG-GAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Pairagon ATCCCCGTGTT-CCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTG-GAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Exonerate_protein2genome ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGT--GTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGG---AGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Exonerate_coding2genome ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGT--GTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGG---AGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from GeneWise ----CCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGG-AGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAA-GGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagtTTAGCAGACCCCAAGCGGCCACCTGGAGACACCTATCTGGGTAGAGCGAGTAG-CATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from CESAR tTCAGCAGACCCCAAA-GGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagtTTAGCAGACCCCAAGCGGCCACCTGGAGACACCTATCTGGGTAGAGCGAGTA-GCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Spaln_aa2Genome GACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagtttagcagACCCCAAGCGGCCACCTGGAGACACCTATCTGGGTAGAGCGAGTAGC-ATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAA-GGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGCGGCCACCTGGAGACACCTATCTGGGTAGAGCGAGTAG-CATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Pairagon TTCAGCAGACCCCAAA-GGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGCGGCCACCTGGAGACACCTATCTGGGTAGAGCGAGTAG-CATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAA-GGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA--GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGCGGCCACCTGGAGACACCTATCTGGGTAGAGCGAGTAGC---ATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Exonerate_coding2genome TTCAGCAGACCCCAAA-GGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA--GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGCGGCCACCTGGAGACACCTATCTGGGTAGAGCGAGTAGC---ATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from GeneWise GACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagtttagcagACCCCAAGCGGCCACCTGGAGACACCTATCTGGGTAGAGCGAGTAGC-ATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagctGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCAT-GGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from CESAR ctGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagctGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCA-TGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGcAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATG-GAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCA-TGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Pairagon CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCAT-GGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCA--CGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATG---GAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCA--CGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATG---GAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from GeneWise --AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagctgacaaaaagttcaccagGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATG-GAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACT-GACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCTTTTGCTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTCGACCAGCACAACCACAATGTTCGGAAGCAGAATGCAC-CATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACT-GACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCTTTTGCTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTCGACCAGCACAACCACAATGTTCGGAAGCAGAATGCAC-CATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACT-GACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCTTTTGCTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTcGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACC-ATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACT-GACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCTTTTGCTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTCGACCAGCACAACCACAATGTTCGGAAGCAGAATGCA-CCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACT-GACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCTTTTGCTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTCGACCAGCACAACCACAATGTTCGGAAGCAGAATGCA-CCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACT-GACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCTTTTGCTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTCGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCATGACCCTGGAGGtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACT-GACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCTTTTGCTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTCGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCATGACCCTGGAGGtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCTTTTGCTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTCGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agcgcactcaggactgagccatttgtcatgttgtggtcatatgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAGC-TGAGGAGACACCATCTAACcggtaagagccgactaatcattaagagcctagagaaaagtagttgtagtaag Alignment from CESAR GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agcgcactcaggactgagccatttgtcatgttgtggtcatatgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAG-CTGAGGAGACACCATCTAACcggtaagagccgactaatcattaagagcctagagaaaagtagttgtagtaag Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcactcaggactgagccatttgtcatgttgtggtcatatgtccacaggtagaagATT------TTCGTGGACCCCAATGGCAAGATCTCTTTACAGCT-GAGGAGACACCATCTAACCGgtaagagccgactaatcattaagagcctagagaaaagtagttgtagtaag Alignment from Spaln_nt2Genome GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcactcaggactgagccatttgtcatgttgtggtcatatgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAGC-TGAGGAGACACCATCTAACCGgtaagagccgactaatcattaagagcctagagaaaagtagttgtagtaag Alignment from Pairagon GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcactcaggactgagccatttgtcatgttgtggtcatatgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAGC-TGAGGAGACACCATCTAACCGgtaagagccgactaatcattaagagcctagagaaaagtagttgtagtaag Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcactcaggactgagccatttgtcatgttgtggtcatatgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAGCTGAGGAGACACCATCTAACCGgtaagagccgactaatcattaagagcctagagaaaagtagttgtagtaag Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcactcaggactgagccatttgtcatgttgtggtcatatgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAGCTGAGGAGACACCATCTAACCGgtaagagccgactaatcattaagagcctagagaaaagtagttgtagtaag Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcactcaggactgagccatttgtcatgttgtggtcatatgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAGCTGAGGAGACACCATCTAACCGgtaagagccgactaatcattaagagcctagagaaaagtagttgtagtaag #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAG-CAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagtaagttgtcagaatgtcagcactcaagtccttccgttccaattgcagaGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCCAGTCCAGTGTCCGGGGTCCATCTACAGAGAACCAGG-GGCTAAAAGAGTGGCCTTAGACTGTATTAAGgtaaatgattgctctcccatgggaactcctaaagaggtgtgaccctatga Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAG-CAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagtaagttgtcagaatgtcagcactcaagtccttccgttccaattgcagaGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCCAGTCCAGTGTCCGGGGTCCATCTACAGAGAACCAG-GGGCTAAAAGAGTGGCCTTAGACTGTATTAAGgtaaatgattgctctcccatgggaactcctaaagaggtgtgaccctatga Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagtaagttgtcagaatgtcagcactcaagtccttccgttccaattgcagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCCAGTCCAGTGTCCGGGGTCCATCTACAGAGAACCAGGGGCTAAAAGAGTGGCCTTAGACTGTATTAAGgtaaatgattgctctcccatgggaactcctaaagaggtgtgaccctatga Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAG-CAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagtaagttgtcagaatgtcagcactcaagtccttccgttccaattgcagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCCAGTCCAGTGTCCGGGGTCCATCTACAGAGAACC-AGGGGCTAAAAGAGTGGCCTTAGACTGTATTAAGgtaaatgattgctctcccatgggaactcctaaagaggtgtgaccctatga Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAG-CAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagtaagttgtcagaatgtcagcactcaagtccttccgttccaattgcagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCCAGTCCAGTGTCCGGGGTCCATCTACAGAGAACC-AGGGGCTAAAAGAGTGGCCTTAGACTGTATTAAGgtaaatgattgctctcccatgggaactcctaaagaggtgtgaccctatga Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagtaagttgtcagaatgtcagcactcaagtccttccgttccaattgcagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCCAGTCCAGTGTCCGGGGTCCATCTACAGAGAACCAGGGGCTAAAAGAGTGGCCTTAGACTGTATTAAGgtaaatgattgctctcccatgggaactcctaaagaggtgtgaccctatga Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagtaagttgtcagaatgtcagcactcaagtccttccgttccaattgcagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCCAGTCCAGTGTCCGGGGTCCATCTACAGAGAACCAGGGGCTAAAAGAGTGGCCTTAGACTGTATTAAGgtaaatgattgctctcccatgggaactcctaaagaggtgtgaccctatga Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagtaagttgtcagaatgtcagcactcaagtccttccgttccaattgcagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCCAGTCCAGTGTCCGGGGTCCATCTACAGAGAACCAGGGGCTAAAAGAGTGGCCTTAGACTGTATTAAGgtaaatgattgctctcccatgggaactcctaaagaggtgtgaccctatga #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCC-GCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from CESAR CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTC-CGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAcGAAAAGATGATCACAGAAAGCAAGTTCCTCCG-CTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCC-GCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Pairagon CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCC-GCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCCGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCCGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCCGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttataggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCTTGACATATCTACAGCGTGCGCTTC-GGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttataggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCTTGACATATCTACAGCGTGCGCTT-CGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCTTGACATATCTACAGCGTGCGCTTCGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCTTGACATATCTACAGCGTGCGCTTC-GGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGG-ATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCTTGACATATCTACAGCGTGCGCTTC-GGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCTTGACATATCTACAGCGTGCGCTTCGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCTTGACATATCTACAGCGTGCGCTTCGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGCATGCAGGCCTTGACATATCTACAGCGTGCGCTTCGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCC-ACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCA-GGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from CESAR GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCC-ACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTC-AGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCAGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGT-CCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCA-GGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Pairagon GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGT-CCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCA-GGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCC-ACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTC--ATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCAG---GACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTC---CACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTG--TCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTT-CAGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCAGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCT-CTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATT-GTCTCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCT-CTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCT-CTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATC--GACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGT---CTCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATC--GACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGT---CTCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTAT-TGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATCTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTT-TCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTAT-TGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATCTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTT-TCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTAT-TGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATcTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCA-GGGTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTAT-TGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATCTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTT-CTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTAT-TGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATCTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTT-CTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTAT-TGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTC--CTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATCTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTCTG---AATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTAT-TGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTC--CTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATCTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTCTG---AATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATCTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAAGGCCAGAGTCAGAAA-CCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCCTGTGTCTGCCCCCCTTTCTCTGGAGCAAGCACTAT-ACCAGCAATCCTTCCTTCAaggtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from CESAR GAATATTTAGAAGGCCAGAGTCAGAAA-CCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCCTGTGTCTGCCCCCCTTTCTCTGGAGCAAGCAC-TATACCAGCAATCCTTCCTTCAaggtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Spaln_aa2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCT-GTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCCtGTGTCTGCCCCCCTTTCTCTGGAGCAAGCACTATA-CCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Spaln_nt2Genome GAATATTTAGAAGGCCAGAGTCAGAAACC-TGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCCTGTGTCTGCCCCCCTTTCTCTGGAGCAAGCACT-ATACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Pairagon GAATATTTAGAAGGCCAGAGTCAGAAA-CCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCCTGTGTCTGCCCCCCTTTCTCTGGAGCAAGCACTA-TACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCCTGTGTCTGCCCCCCTTTCTCTGGAGCAAGCACTATACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Exonerate_coding2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCCTGTGTCTGCCCCCCTTTCTCTGGAGCAAGCACTATACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCCTGTGTCTGCCCCCCTTTCTCTGGAGCAAGCACTATACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCC-ACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG cttgccatcagcttctgtattgacaaactttgttataacattggctttagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTC---TTTTGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGC-CCCACAGGATCTGgtgaggacctcttgccaacctcctctccgtgtaatatagagatctggtgg Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG cttgccatcagcttctgtattgacaaactttgttataacattggctttagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGC-CCCACAGGATCTGgtgaggacctcttgccaacctcctctccgtgtaatatagagatctggtgg Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTGAG cttgccatcagcttctgtattgacaaactttgttataacattggctttagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGcCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCACAGG---ATCTGgtgaggacctcttgccaacctcctctccgtgtaatatagagatctggtgg Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCC-ACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG cttgccatcagcttctgtattgacaaactttgttataacattggctttagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCT---TTTGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGG-CCCCACAGGATCTGgtgaggacctcttgccaacctcctctccgtgtaatatagagatctggtgg Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG cttgccatcagcttctgtattgacaaactttgttataacattggctttagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCT---TTTGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGG-CCCCACAGGATCTGgtgaggacctcttgccaacctcctctccgtgtaatatagagatctggtgg Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCT cttgccatcagcttctgtattgacaaactttgttataacattggctttagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCACAGGATCTGgtgaggacctcttgccaacctcctctccgtgtaatatagagatctggtgg Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTG-CCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCT cttgccatcagcttctgtattgacaaactttgttataacattggctttagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCACAGGATCTGgtgaggacctcttgccaacctcctctccgtgtaatatagagatctggtgg Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG cttgccatcagcttctgtattgacaaactttgttataacattggctttagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCACAGGATCTGgtgaggacctcttgccaacctcctctccgtgtaatatagagatctggtgg #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAAC-CTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATG-CTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAAC-CTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATG-CTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAAC-CTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACcCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGC-TTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAA-CCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCT-TTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAA-CCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATG-CTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCT-TCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtggagtctcttgagtgagggcatctgtcatcctctgtccttcccacaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTCTCATTGCTTTTTTTACTAGTGAATGTACTGTGTGCAG-GCTGTCACGCCAGCGTCAACGACAACCCTGGATCCTTCTACTGGTACGTGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGCGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaaggccaccgcatggatgtggcacccttggatctgtggacagagtact Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCT-TCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtggagtctcttgagtgagggcatctgtcatcctctgtccttcccacaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTCTCATTGCTTTTTTTACTAGTGAATGTACTGTGTGCA-GGCTGTCACGCCAGCGTCAACGACAACCCTGGATCCTTCTACTGGTACGTGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGCGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaaggccaccgcatggatgtggcacccttggatctgtggacagagtact Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtggagtctcttgagtgagggcatctgtcatcctctgtccttcccacagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTCTCATTGCTTTTTTTACTAGTGAATGTACTGTGTGCAGGCTGTCACGCCAGCGTCAACGACAACCCTGGATCCTTCTACTGGTACGTGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGCGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaaggccaccgcatggatgtggcacccttggatctgtggacagagtact Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCT-TCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtggagtctcttgagtgagggcatctgtcatcctctgtccttcccacagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTCTCATTGCTTTTTTTACTAGTGAATGTACTGTGTGCAG-GCTGTCACGCCAGCGTCAACGACAACCCTGGATCCTTCTACTGGTACGTGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGCGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaaggccaccgcatggatgtggcacccttggatctgtggacagagtact Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCT-TCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtggagtctcttgagtgagggcatctgtcatcctctgtccttcccacagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTCTCATTGCTTTTTTTACTAGTGAATGTACTGTGTGCAG-GCTGTCACGCCAGCGTCAACGACAACCCTGGATCCTTCTACTGGTACGTGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGCGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaaggccaccgcatggatgtggcacccttggatctgtggacagagtact Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtggagtctcttgagtgagggcatctgtcatcctctgtccttcccacagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTCTCATTGCTTTTTTTACTAGTGAATGTACTGTGTGCAGGCTGTCACGCCAGCGTCAACGACAACCCTGGATCCTTCTACTGGTACGTGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGCGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaaggccaccgcatggatgtggcacccttggatctgtggacagagtact Alignment from Exonerate_coding2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtggagtctcttgagtgagggcatctgtcatcctctgtccttcccacagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTCTCATTGCTTTTTTTACTAGTGAATGTACTGTGTGCAGGCTGTCACGCCAGCGTCAACGACAACCCTGGATCCTTCTACTGGTACGTGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGCGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaaggccaccgcatggatgtggcacccttggatctgtggacagagtact Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtggagtctcttgagtgagggcatctgtcatcctctgtccttcccacagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTCTCATTGCTTTTTTTACTAGTGAATGTACTGTGTGCAGGCTGTCACGCCAGCGTCAACGACAACCCTGGATCCTTCTACTGGTACGTGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGCGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaaggccaccgcatggatgtggcacccttggatctgtggacagagtact #### Hnrnpul2_ID2401_5 --> 0 - 1 Original Alignment GTAACTCAGAATCTC-CCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTg tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCCAATGCAAGAAGGCTGCACAGAAGTCTCTC-CCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTggtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from CESAR GTAACTCAGAATCTC-CCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTg tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCCAATGCAAGAAGGCTGCACAGAAGTCTCT-CCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTggtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Spaln_aa2Genome GTAACTCAGAATCTCCCA-ATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCCaATGCAAGAAGGCTGCACAGAAGTCTCTCC-CTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Spaln_nt2Genome GTAACTCAGAATCT-CCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCCAATGCAAGAAGGCTGCACAGAAGTCTCTC-CCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Pairagon GTAACTCAGAATC-TCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCCAATGCAAGAAGGCTGCACAGAAGTCTCTC-CCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Exonerate_protein2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCCAATGCAAGAAGGCTGCACAGAAGTCTCTCCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Exonerate_coding2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCCAATGCAAGAAGGCTGCACAGAAGTCTCTCCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from GeneWise GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCCAATGCAAGAAGGCTGCACAGAAGTCTCTCCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagtgGGTGGGCAGCGCCGAGGCCTACGACAACCGGGCCTATGGGCAGCAGTACTGGG-GCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from CESAR tgGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagtgGGTGGGCAGCGCCGAGGCCTACGACAACCGGGCCTATGGGCAGCAGTACT-GGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCcTACGACAACCGGGCCTATGGGCAGCAGTACTGGGG-CAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGG-CTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGG-CAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Pairagon TGGGCGGGCAGCGCCGAGG-CTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCCTACGACAACCGGGCCTATGGGCAGCAGTACT-GGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGG--CAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGCAG---TCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGC-TACGACAACCGGGCCTACGGGCAGCAGTACTGGGGG--CAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGCAG---TCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCT-GATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagccATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCCCAGGTAGGCGCTCGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATG-CCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCT-GATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagccATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCCCAGGTAGGCGCTCGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATG-CCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCCCAGGTAGGCGCTCGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCT-GATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCCCAGGTAGGCGCTCGATGTTGCCATGGTGGTGACCCCTTGTTACTATCAT-GCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCT-GATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCCCAGGTAGGCGCTCGATGTTGCCATGGTGGTGACCCCTTGTTACTATCAT-GCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCCCAGGTAGGCGCTCGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCCCAGGTAGGCGCTCGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCATGGCCCAGGTAGGCGCTCGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGT-GGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttaggTTGCTCCAGGTCTGTCGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGC-TAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGaagtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from CESAR gCTGCTCCAGGTCTGT-GGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttaggTTGCTCCAGGTCTGTCGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGC-TAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGaagtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTCGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGT-GGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTCGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGC-TAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Pairagon GCTGCTCCAGGTCTGT-GGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTCGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGC-TAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTCGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTCGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCC-CTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCCTGATCTTGTACCAACTGCTGGATGGATTCTCCCTCCTGG-GAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from CESAR AGCCCCAGCACCCCACTGGCC-CTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCCTGATCTTGTACCAACTGCTGGATGGATTCTCCCTCCTG-GGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCC-CTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCcCTGATCTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGG-AAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCC-TGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCCTGATCTTGTACCAACTGCTGGATGGATTCTCCCTCCTGG-GAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAACA---ACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Pairagon AGCCCCAGCACCCCACT-GGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCCTGATCTTGTACCAACTGCTGGATGGATTCTCCCTCCTGG-GAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAACA---ACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCC-CTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTG--GAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCCTGATCTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGG---AAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Exonerate_coding2genome AGCCCCAGCACCCCACTGGC---CCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTC--ACCCCTGATCTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGG-AAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from GeneWise --CCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagagCCCCGGCACCCCACTCACCCCTGATCTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGG-AAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAG-CAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCCAAGCAAGGAGCCAGAGCACCTCTGTCCCTGCCA-GAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAG-CAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCCAAGCAAGGAGCCAGAGCACCTCTGTCCCTGCCA-GAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCCAAGCAAGGAGCCAGAGCACCTCTGTCCCTGCCAGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAG-CAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCCAAGCAAGGAGCCAGAGCACCTCTGTCCCTGCCA-GAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAG-CAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCCAAGCAAGGAGCCAGAGCACCTCTGTCCCTGCCA-GAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCCAAGCAAGGAGCCAGAGCACCTCTGTCCCTGCCAGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Exonerate_coding2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAG-CAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCCAAGCAAGGAGCCAGAGCACCTCTGTCCCTGCCAGA-GTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCCAAGCAAGGAGCCAGAGCACCTCTGTCCCTGCCAGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagcCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTT---------CTCCTGGTGCAGGACCTTC-GCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagcCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTT---------CTCCTGGTGCAGGACCTT-CGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Spaln_aa2Genome CGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTTCTCCTGGTGCAGGACCTTCG-CCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCC-CGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCC---------TTCTCCTGGTGCAGGACCTTC-GCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCC-CGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCC---------TTCTCCTGGTGCAGGACCTTC-GCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Exonerate_protein2genome CGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTC--CAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTTCTCCTGGTGCAGGACCTTCG---CCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Exonerate_coding2genome CGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTC--CAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTTCTCCTGGTGCAGGACCTTCG---CCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTTCTCCT---------GGTGCAGGACCTTCGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCA-AAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACAAGAAAGCAAAGGAGGTGGCAGCAGCCAGAA-GGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCA-AAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACAAGAAAGCAAAGGAGGTGGCAGCAGCCA-GAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCA-AAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAcAAGAAAGCAAAGGAGGTGGCAGCAGCCAGAAG-GTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCA-AAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACAAGAAAGCAAAGGAGGTGGCAGCAGCCAGA-AGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCA-AAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACAAGAAAGCAAAGGAGGTGGCAGCAGCCA-GAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACAAGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACAAGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACAAGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAA-GCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaaggGAGATGCAGGAGAGAGAGAAACGCCTTGCGACTCCAAAAGGAACGACTTC-GAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from CESAR gGAGATGCAGGAGAGAGAGAAA-GCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaaggGAGATGCAGGAGAGAGAGAAACGCCTTGCGACTCCAAAAGGAACGACTT-CGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAA-GCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAAcGCCTTGCGACTCCAAAAGGAACGACTTCG-AAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAA-GCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAACGCCTTGCGACTCCAAAAGGAACGACTTC-GAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAA-GCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAACGCCTTGCGACTCCAAAAGGAACGACTTC-GAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAACGCCTTGCGACTCCAAAAGGAACGACTTCGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAACGCCTTGCGACTCCAAAAGGAACGACTTCGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAACGCCTTGCGACTCCAAAAGGAACGACTTCGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTAT-GAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATCGAAGACAAGCATCAGCTTCCCGCCCCCAAGT-GACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAggtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from CESAR AAGCTGCAGTTCTAT-GAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATCGAAGACAAGCATCAGCTTCCCGCCCCCAAG-TGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAggtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Spaln_aa2Genome AAGCTGCAGTTCTAT-GAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATcGAAGACAAGCATCAGCTTCCCGCCCCCAAGTG-ACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Spaln_nt2Genome AAGCTGCAGTTCTAT-GAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATCGAAGACAAGCATCAGCTTCCCGCCCCCAAGT-GACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Pairagon AAGCTGCAGTTCTAT-GAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATCGAAGACAAGCATCAGCTTCCCGCCCCCAAGT-GACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATCGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATCGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATCGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG aggtgtgtatccacaggtgacctaacttaccctgcccttaattcctctagtGAGATCAGTGAAATTACTAGTATTAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACC-CATCAATTACTACAAGgtaagcgggcatgactacaaggtgagggggcatgctcagggaacaattga Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG aggtgtgtatccacaggtgacctaacttaccctgcccttaattcctctagtGAGATCAGTGAAATTACTAGTATTAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAAC-CCATCAATTACTACAAGgtaagcgggcatgactacaaggtgagggggcatgctcagggaacaattga Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG aggtgtgtatccacaggtgacctaacttaccctgcccttaattcctctagTGAGATCAGTGAAATTACTAGTATTAAGAAAcGAAGATGTCATCTCCACACTGCAGTATCTCAACCC-ATCAATTACTACAAGgtaagcgggcatgactacaaggtgagggggcatgctcagggaacaattga Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG aggtgtgtatccacaggtgacctaacttaccctgcccttaattcctctagTGAGATCAGTGAAATTACTAGTATTAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACC-CATCAATTACTACAAGgtaagcgggcatgactacaaggtgagggggcatgctcagggaacaattga Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAA-GAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG aggtgtgtatccacaggtgacctaacttaccctgcccttaattcctctagTGAGATCAGTGAAATTACTAGTATTAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACC-CATCAATTACTACAAGgtaagcgggcatgactacaaggtgagggggcatgctcagggaacaattga Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG aggtgtgtatccacaggtgacctaacttaccctgcccttaattcctctagTGAGATCAGTGAAATTACTAGTATTAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCCATCAATTACTACAAGgtaagcgggcatgactacaaggtgagggggcatgctcagggaacaattga Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAA---AGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG aggtgtgtatccacaggtgacctaacttaccctgcccttaattcctctagTGAGATCAGTGAAATTACTAGTATTAAG--AAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCC-ATCAATTACTACAAGgtaagcgggcatgactacaaggtgagggggcatgctcagggaacaattga Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG aggtgtgtatccacaggtgacctaacttaccctgcccttaattcctctagTGAGATCAGTGAAATTACTAGTATTAAGAAACGAAGATGTCATCTCCACACTGCAGTATCTCAACCCATCAATTACTACAAGgtaagcgggcatgactacaaggtgagggggcatgctcagggaacaattga #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAA-ACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aggctcccacgtatacatgatgcttactatttactatccctcccccctaggcTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGA-TGGGGAGAGGCCCCAGATCACCATCaagtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAA-ACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aggctcccacgtatacatgatgcttactatttactatccctcccccctaggcTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAG-ATGGGGAGAGGCCCCAGATCACCATCaagtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAA-ACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAcACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGATGGG-GAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAA-ACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGA-TGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAA-ACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGA-TGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGATGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGATGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGATGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ccgtattgcctaacttggcactcctgcttttctattttccgttcttttagGAAAAAGAGTCCACAGAGCGATTACAACATAGCCTGCATTTTAACTCTAC-TCCCTACCAGCGCCGCGGCTATGGTAAGCTGCTTATTGAGTTCagtacgtacgtgctacctggccaggatctggcaggatgaggttgggttggt Alignment from CESAR GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ccgtattgcctaacttggcactcctgcttttctattttccgttcttttagGAAAAAGAGTCCACAGAGCGATTACAACATAGCCTGCATTTTAACTCTA-CTCCCTACCAGCGCCGCGGCTATGGTAAGCTGCTTATTGAGTTCagtacgtacgtgctacctggccaggatctggcaggatgaggttgggttggt Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccgtattgcctaacttggcactcctgcttttctattttccgttcttttagGAAAAAGAGTCCACAGAGcGATTACAACATAGCCTGCATTTTAACTCTACT-CCCTACCAGCGCCGCGGCTATGGTAAGCTGCTTATTGAGTTCAgtacgtacgtgctacctggccaggatctggcaggatgaggttgggttggt Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccgtattgcctaacttggcactcctgcttttctattttccgttcttttagGAAAAAGAGTCCACAGAGCGATTACAACATAGCCTGCATTTTAACTCT-ACTCCCTACCAGCGCCGCGGCTATGGTAAGCTGCTTATTGAGTTCAgtacgtacgtgctacctggccaggatctggcaggatgaggttgggttggt Alignment from Pairagon GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccgtattgcctaacttggcactcctgcttttctattttccgttcttttagGAAAAAGAGTCCACAGAGCGATTACAACATAGCCTGCATTTTAACTCTA-CTCCCTACCAGCGCCGCGGCTATGGTAAGCTGCTTATTGAGTTCAgtacgtacgtgctacctggccaggatctggcaggatgaggttgggttggt Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccgtattgcctaacttggcactcctgcttttctattttccgttcttttagGAAAAAGAGTCCACAGAGCGATTACAACATAGCCTGCATTTTAACTCTACTCCCTACCAGCGCCGCGGCTATGGTAAGCTGCTTATTGAGTTCAgtacgtacgtgctacctggccaggatctggcaggatgaggttgggttggt Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccgtattgcctaacttggcactcctgcttttctattttccgttcttttagGAAAAAGAGTCCACAGAGCGATTACAACATAGCCTGCATTTTAACTCTACTCCCTACCAGCGCCGCGGCTATGGTAAGCTGCTTATTGAGTTCAgtacgtacgtgctacctggccaggatctggcaggatgaggttgggttggt Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccgtattgcctaacttggcactcctgcttttctattttccgttcttttagGAAAAAGAGTCCACAGAGCGATTACAACATAGCCTGCATTTTAACTCTACTCCCTACCAGCGCCGCGGCTATGGTAAGCTGCTTATTGAGTTCAgtacgtacgtgctacctggccaggatctggcaggatgaggttgggttggt #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGGGCA-GTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTCGTGGCAGCCCAGCCAGGGTGGAAGCGAAAATCTA-CTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from CESAR AATGGGTCAGCCCGTAGGGCA-GTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTCGTGGCAGCCCAGCCAGGGTGGAAGCGAAAATCT-ACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGGGCAG TGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGAT cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTCgtggcagcccagccagggtggaagcgaaaatctactgcttgggcactgatgagGTGAGTCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGAT Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCA-GTGGCAGCCCAGCCTGG AC-GGAAGCGGAAATCTAATTGCTTGGGCACTGAT cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTCGTGGCAGCCCAGCCAGGgtggaagcgaaaatctactgcttgggcactgatgaggtgagtcccagccagGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGAT Alignment from Pairagon AATGGGTCAGCCCGTAGGGC-AGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTCGTGGCAGCCCAGCCAGGGTGGAAGCGAAAATCT-ACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from Exonerate_protein2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTCGTGGCAGCCCAGCCAGGGTGGAAGCGAAAATCTACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from Exonerate_coding2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTCGTGGCAGCCCAGCCAGGGTGGAAGCGAAAATCTACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from GeneWise GCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGAT cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagaatggatcaacctgtagagctcgtggcagcccagccagggtggaagcgaaaatctactgcttgggcactgatgaggtgagTCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGAT #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctccgtcattcgtcttcgctgcccagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAAAAAGAGGCCCAGCACACCTACCAAGAATGGACTTCCTGGGTCCCACC-TGGCTCTCCCAAAAGGGAGGTGgtttgtagattgcccatttcatcttctctctctggtccatcctgtcttcc Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctccgtcattcgtcttcgctgcccagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAAAAAGAGGCCCAGCACACCTACCAAGAATGGACTTCCTGGGTCCC-ACCTGGCTCTCCCAAAAGGGAGGTGgtttgtagattgcccatttcatcttctctctctggtccatcctgtcttcc Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctccgtcattcgtcttcgctgcccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAAAAAGAGGCCCAGCACACCTACCAAGAATGGACTTCCTGGGTCCCACCTGGCTCTCCCAAAAGGGAGGTGgtttgtagattgcccatttcatcttctctctctggtccatcctgtcttcc Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctccgtcattcgtcttcgctgcccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAAAAAGAGGCCCAGCACACCTACCAAGAATGGACTTCCTGGGTCCC-ACCTGGCTCTCCCAAAAGGGAGGTGgtttgtagattgcccatttcatcttctctctctggtccatcctgtcttcc Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAG-ACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctccgtcattcgtcttcgctgcccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAAAAAGAGGCCCAGCACACCTACCAAGAATGGACTTCCTGGGTCCCA-CCTGGCTCTCCCAAAAGGGAGGTGgtttgtagattgcccatttcatcttctctctctggtccatcctgtcttcc Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctccgtcattcgtcttcgctgcccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAAAAAGAGGCCCAGCACACCTACCAAGAATGGACTTCCTGGGTCCCACCTGGCTCTCCCAAAAGGGAGGTGgtttgtagattgcccatttcatcttctctctctggtccatcctgtcttcc Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctccgtcattcgtcttcgctgcccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAAAAAGAGGCCCAGCACACCTACCAAGAATGGACTTCCTGGGTCCCACCTGGCTCTCCCAAAAGGGAGGTGgtttgtagattgcccatttcatcttctctctctggtccatcctgtcttcc Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctccgtcattcgtcttcgctgcccagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAAAAAGAGGCCCAGCACACCTACCAAGAATGGACTTCCTGGGTCCCACCTGGCTCTCCCAAAAGGGAGGTGgtttgtagattgcccatttcatcttctctctctggtccatcctgtcttcc #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATCGAG-GGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGCGGATGCCGCCTGCCTGTCCTTCGGCGCA-TCAAGATAATGAAGATGAGTGGcgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from CESAR GGGGAGATAATCGAG-GGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGCGGATGCCGCCTGCCTGTCCTTCGGCGC-ATCAAGATAATGAAGATGAGTGGcgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Spaln_aa2Genome GGGGAGATAATCGAG-GGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGcGGATGCCGCCTGCCTGTCCTTCGGCGCAT-CAAGATAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Spaln_nt2Genome GGGGAGATAATCGAGG-GCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGCGGATGCCGCCTGCCTGTCCTTCGGCGC-ATCAAGATAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Pairagon ----------------------------------------------------GGAGATAATCGAG-GGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC GAGCCAGAGGCCTGCCAGTACCCAGCCCCATCCTCTTTCTCTTTTTCCAGGGGGAGATAATCGAGCGGATGCCGCCTGCCTGTCCTTCGGCGC-ATCAAGATAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGCGGATGCCGCCTGCCTGTCCTTCGGCGCATCAAGATAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Exonerate_coding2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGCGGATGCCGCCTGCCTGTCCTTCGGCGCATCAAGATAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from GeneWise gagccagaggcctgccagtacccagccccatcctctttctctttttccagggggagataatcgagcggatgccgcctgcctgtccttcggcgcatcaagataatgaagatgagtggcgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACCAGCTCACTACAGATTCAGGCTTTGC-CCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACCAGCTCACTACAGATTCAGGCTTTG-CCCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCCCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACCAGCTCACTACAGATTCAGGCTTTGC-CCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACCAGCTCACTACAGATTCAGGCTTTGC-CCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCCCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCCCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTCGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCCCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTAC-ACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGG-ACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTAC-ACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGG-ACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTA-CACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGA-CACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTA-CACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGG-ACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATC-CAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagatTTTAATGTTGAATATATCCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATT-TGATGGACTTGGAATAaggtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from CESAR atTTTAATGTAGAGTATATC-CAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagatTTTAATGTTGAATATATCCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAAT-TTGATGGACTTGGAATAaggtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATC-CAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCcCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTT-GATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCC-AGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATT-TGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Pairagon ATTTTAATGTAGAGTATAT-CCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATT-TGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTG-CTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCCTGAAAGACCCTCAAAGTATACTTGGTCACT-AAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTG-CTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCCTGAAAGACCCTCAAAGTATACTTGGTC-ACTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCCTGAAAGACCCTCAAAGTATACTTGGTCACTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTG-CTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCCTGAAAGACCCTCAAAGTATACTTGGTCAC-TAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTG-CTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCCTGAAAGACCCTCAAAGTATACTTGGTCAC-TAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaACCCAGGTGCAAATTTTGGATTCACAGTCTGTTCTGCCTGAAAGACCCTCAAAGTATACTTGGTCACTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaACCCAGGTGCAAATTTTGGATTCACAGTCTGTTCTGCCTGAAAGACCCTCAAAGTATACTTGGTCACTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccagGTGCAAATTTTGGATTCACAGTCTGTTCTGCCTGAAAGACCCTCAAAGTATACTTGGTCACTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTA-AGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTACAGAGAGGCTGGGAATATCAACACATCCTTATTGA-CCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAaagtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTA-AGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTACAGAGAGGCTGGGAATATCAACACATCCTTATTGA-CCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAaagtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTACAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTA-AGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTACAGAGAGGCTGGGAATATCAACACATCCTTATTGAC-CTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTA-AGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTACAGAGAGGCTGGGAATATCAACACATCCTTATTGAC-CTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTACAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTACAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTACAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa #### Kif20b_ID7006_11 --> 1 - 0 Original Alignment gGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACC-CACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaaggGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCCACTATTTCCAAAGTTTTTTCACTGGAAAAG-GAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from CESAR gGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACC-CACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaaggGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGAA-AATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Spaln_aa2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Spaln_nt2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCC-ACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCCACTATTTCCAAAGTTTTTTCACTGG-AAAAGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Pairagon GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGA-CCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCCACTATTTCCAAAGTTTTTTCACTGGAAAA-GGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Exonerate_protein2genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Exonerate_coding2genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from GeneWise GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGG-CGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgggctgtaagactaccatgaatggacgtggctgtctctgcctgccagGATGGCAGTGGCTCTCTTCAGCTGCAGTGGATCCTTTGGGAAACTCCGGGATGCTC-GAGACGTAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTaggtatggcattagctctcccttcattctgagaacatactatcactcataag Alignment from CESAR GACGGCAGCGGCTCTCTGCGG-CGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgggctgtaagactaccatgaatggacgtggctgtctctgcctgccagGATGGCAGTGGCTCTCTTCAGCTGCAGTGGATCCTTTGGGAAACTCCGGGATGCT-CGAGACGTAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTaggtatggcattagctctcccttcattctgagaacatactatcactcataag Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGG-CGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgggctgtaagactaccatgaatggacgtggctgtctctgcctgccagGATGGCAGTGGCTCTCTTCAGcTGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCG-AGACGTAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatggcattagctctcccttcattctgagaacatactatcactcataag Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGC-GCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgggctgtaagactaccatgaatggacgtggctgtctctgcctgccagGATGGCAGTGGCTCTCTTCAGCTGCAGTGGATCCTTTGGGAAACTCCGGGATGCTC-GAGACGTAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatggcattagctctcccttcattctgagaacatactatcactcataag Alignment from Pairagon -------------------------------------------------GGACGGCAGCGGCTCTCTGCGGC-GCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG GGTGGGCTGTAAGACTACCATGAATGGACGTGGCTGTCTCTGCCTGCCAGGATGGCAGTGGCTCTCTTCAGCTGCAGTGGATCCTTTGGGAAACTCCGGGATGCTC-GAGACGTAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatggcattagctctcccttcattctgagaacatactatcactcataag Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgggctgtaagactaccatgaatggacgtggctgtctctgcctgccagGATGGCAGTGGCTCTCTTCAGCTGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCGAGACGTAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatggcattagctctcccttcattctgagaacatactatcactcataag Alignment from Exonerate_coding2genome GACGGCAGCGGCTCTCTGCGGCG---CAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgggctgtaagactaccatgaatggacgtggctgtctctgcctgccagGATGGCAGTGGCTCTCTTCAG--CTGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCG-AGACGTAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatggcattagctctcccttcattctgagaacatactatcactcataag Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgggctgtaagactaccatgaatggacgtggctgtctctgcctgccagGATGGCAGTGGCTCTCTTCAGCTGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCGAGACGTAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatggcattagctctcccttcattctgagaacatactatcactcataag #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGC-CAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagcCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTCGAGGGCAAATTGGAGGCTGCACACACAC-GGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGC-CAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagcCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTCGAGGGCAAATTGGAGGCTGCACACACA-CGGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTCGAGGGCAAATTGGAGGCTGCACACACACGGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCC-AGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTCGAGGGCAAATTGGAGGCTGCACACACACGGA-AGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCC-AGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTCGAGGGCAAATTGGAGGCTGCACACACAC-GGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTCGAGGGCAAATTGGAGGCTGCACACACACGGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Exonerate_coding2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTCGAGGGCAAATTGGAGGCTGCACACACACGGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTCGAGGGCAAATTGGAGGCTGCACACACACGGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAACAATCTG-GCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGCGCTGTGCTTTATGGCAAACGGGGCAAGTACCAAG-AGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from CESAR GTGGCTGCGACCCTCAACAATCTG-GCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGCGCTGTGCTTTATGGCAAACGGGGCAAGTACCAAG-AGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGCGCTGTGCTTTATGGCAAACGGGGCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTG-GCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGCGCTGTGCTTTATGGCAAACGGGGCAAGTACCAAGA-GCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTG-GCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGCGCTGTGCTTTATGGCAAACGGGGCAAGTACCAAGA-GCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Exonerate_protein2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGCGCTGTGCTTTATGGCAAACGGGGCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Exonerate_coding2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGCGCTGTGCTTTATGGCAAACGGGGCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from GeneWise GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGCGCTGTGCTTTATGGCAAACGGGGCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg ccttcctctgtttccagtagaggtcaattcttctgtctcttccaacccagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCC-CAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaggtcccttgccccatcctgctaaaatagctgtggtcctagcttcttc Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg ccttcctctgtttccagtagaggtcaattcttctgtctcttccaacccagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGC-CCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaggtcccttgccccatcctgctaaaatagctgtggtcctagcttcttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ccttcctctgtttccagtagaggtcaattcttctgtctcttccaacccagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGcTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCCAAG-ACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggtcccttgccccatcctgctaaaatagctgtggtcctagcttcttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ccttcctctgtttccagtagaggtcaattcttctgtctcttccaacccagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCC-CAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggtcccttgccccatcctgctaaaatagctgtggtcctagcttcttc Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ccttcctctgtttccagtagaggtcaattcttctgtctcttccaacccagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCC-CAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggtcccttgccccatcctgctaaaatagctgtggtcctagcttcttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGC--CTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ccttcctctgtttccagtagaggtcaattcttctgtctcttccaacccagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCC---AAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggtcccttgccccatcctgctaaaatagctgtggtcctagcttcttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTC---CCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ccttcctctgtttccagtagaggtcaattcttctgtctcttccaacccagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATG--CTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCC-AAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggtcccttgccccatcctgctaaaatagctgtggtcctagcttcttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATG-TCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG ccttcctctgtttccagtagaggtcaattcttctgtctcttccaacccagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGCTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCC-AAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggtcccttgccccatcctgctaaaatagctgtggtcctagcttcttc #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGCATGCTAGATCAACTGTCCAAAAACATTACTCGATGTGGGT-GTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from CESAR GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGCATGCTAGATCAACTGTCCAAAAACATTACTCGATGTG-GGTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Spaln_aa2Genome ----CAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGCATGCTAGATCAACTGTCCAAAAACATTACTCGATGTGGGTG-TCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Spaln_nt2Genome GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGCATGCTAGATCAACTGTCCAAAAACATTACTCGATGT-GGGTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Pairagon GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGCATGCTAGATCAACTGTCCAAAAACATTACTCGATGTGGG-TGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Exonerate_protein2genome GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGG--CTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGCATGCTAGATCAACTGTCCAAAAACATTACTCGATGTGGGTG---TCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Exonerate_coding2genome GCCCAGGACCCCCAG-ATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGG--CTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGCATGCTAGATCAACTGTCCAAAAACATTACTCGATGTGGGTG---TCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from GeneWise -GACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacaggctcagGACCCCCAGCATGCTAGATCAACTGTCCAAAAACATTACTCGATGTGGGTG-TCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGAC-ATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tagtagtaaaagaccaagggcaaaggatggtgcatttacctaccgtgcagGTGTGTGTGGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACCATGATGCGGATAAAGACATGGCACTTCAGCATCC-GCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtacgcttgtgccagcacctgagataagggttggggagaccacttcgatt Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGAC-ATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tagtagtaaaagaccaagggcaaaggatggtgcatttacctaccgtgcagGTGTGTGTGGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACCATGATGCGGATAAAGACATGGCACTTCAGCATCC-GCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtacgcttgtgccagcacctgagataagggttggggagaccacttcgatt Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tagtagtaaaagaccaagggcaaaggatggtgcatttacctaccgtgcagGTGTGTGTGGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACCATGATGCGGATAAAGACATGGCACTTCAGCATCCGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtacgcttgtgccagcacctgagataagggttggggagaccacttcgatt Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGA-CATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tagtagtaaaagaccaagggcaaaggatggtgcatttacctaccgtgcagGTGTGTGTGGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACCATGATGCGGATAAAGACATGGCACTTCAGCATCC-GCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtacgcttgtgccagcacctgagataagggttggggagaccacttcgatt Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGA-CATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tagtagtaaaagaccaagggcaaaggatggtgcatttacctaccgtgcagGTGTGTGTGGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACCATGATGCGGATAAAGACATGGCACTTCAGCATCC-GCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtacgcttgtgccagcacctgagataagggttggggagaccacttcgatt Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGAC-ATGATGCGGATAAAGACGTGGCACTTCAGCATC--CGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tagtagtaaaagaccaagggcaaaggatggtgcatttacctaccgtgcagGTGTGTGTGGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACCATGATGCGGATAAAGACATGGCACTTCAGCATCCG---CAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtacgcttgtgccagcacctgagataagggttggggagaccacttcgatt Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGAC-ATGATGCGGATAAAGACGTGGCACTTCAGCATC--CGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tagtagtaaaagaccaagggcaaaggatggtgcatttacctaccgtgcagGTGTGTGTGGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACCATGATGCGGATAAAGACATGGCACTTCAGCATCCG---CAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtacgcttgtgccagcacctgagataagggttggggagaccacttcgatt Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tagtagtaaaagaccaagggcaaaggatggtgcatttacctaccgtgcagGTGTGTGTGGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACCATGATGCGGATAAAGACATGGCACTTCAGCATCCGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtacgcttgtgccagcacctgagataagggttggggagaccacttcgatt #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGC-CAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagctGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTTGCTGCT-TAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGC-CAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagctGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTTGCTGC-TTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTTGCTGCTTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTG-CCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTTGCTGCT-TAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTG-CCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTTGCTGCT-TAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGC-CAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGC--TGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTTGCTGCTT---AGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGC-CAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGC--TGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTTGCTGCTT---AGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGC-CAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTTGCTGCTT-AGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCACGTGCAGCAGAGCCACCCCACTACCACCACCTCAC-CCCTCGGCCTTACCTAggtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from CESAR CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCACGTGCAGCAGAGCCACCCCACTACCACCACCTCAC-CCCTCGGCCTTACCTAggtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAcGTGCAGCAGAGCCACCCCACTACCACCACCTCACC-CCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCACGTGCAGCAGAGCCACCCCACTACCACCACCTCA-CCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Pairagon CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCACGTGCAGCAGAGCCACCCCACTACCACCACCTCA-CCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCA ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCACGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Exonerate_coding2genome GAGTGACCATGGATCCA------CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCA ggggaaggcttgtggtaccatcaggagGGTGTTTCTGCCCACCGCTTTAGCCGGTGAGTGAAGAGCGCTCACGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from GeneWise ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagccggtgagtgaagagcgctcacgtgcagcagagccaccccactaccaccacctcacccctcggccttacctaggtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg aacataactcacccagtccacccacatctgatgagtgttttctcttccagatGTGAATGAGTGTGGGGCAGAGCCCCTGCGGCCCTGGAAAAGGTATCTGTATGA-CACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGggtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCC-TGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg aacataactcacccagtccacccacatctgatgagtgttttctcttccagatGTGAATGAGTGTGGGGCAGAGCCCCTGCGGCCCTGGAAAAGGTATCTGTA-TGACACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGggtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCCTGCGGCCCTGGAAAAGGTATCTGTATGACACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCCTGCGGCCCTGGAAAAGGTATCTGTATG-ACACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCCTGCGGCCCTGGAAAAGGTATCTGTATG-ACACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCCTGCGGCCCTGGAAAAGGTATCTGTATGACACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCCTGCGGCCCTGGAAAAGGTATCTGTATGACACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCCTGCGGCCCTGGAAAAGGTATCTGTATGACACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGAT-GACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATCGACTGTTGCTGCCGCCAGGGCCGTGGCTGGG-GACCCAGTGCAGACCATGCCCACCACGTGGTACTggtaagatatccctgatggatgaccacctttctgttttgtttcagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGAT-GACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATCGACTGTTGCTGCCGCCAGGGCCGTGGCTGGG-GACCCAGTGCAGACCATGCCCACCACGTGGTACTggtaagatatccctgatggatgaaccttttcatcttgtgcttcagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATCGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccacctttctgttttgtttcagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGAT-GACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATCGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGG-ACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccacctttctgttttgtttcagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGAT-GACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATCGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGG-ACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccacctttctgttttgtttcagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATCGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccacctttctgttttgtttcagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATCGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccacctttctgttttgtttcagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATCGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccacctttctgttttgtttcagGGTCCC #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagatGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGC-CAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgtgaggcctc Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagatGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAG-CCAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgtatagtctg Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGA GCACC caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCcCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAgccaggctacgtccagttgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgtgagGCCTC Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCG-CAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGC-CAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgtgaggcctc Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCT-CCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGC-CAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgtgaggcctc Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCA caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCCAGGCTACGTCCAGttgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgtgaggcctc Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCA caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCCAGGCTACGTCCAGttgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgtgaggcctc Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTG------------------------CGCTCAGTG------------------------- caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCCAGGCTACGTCCAGTTGTGTGTTTCAAGTGGTAGAAGCGTCATGTCAAGGCTGTACGTGAGGCCTC #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccaggcTACCCTAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCACTGCGGGAAT-GCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from CESAR gcTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccaggcTACCCTAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCACTGCGGGAA-TGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCACTGCGGGAAT-GCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Pairagon GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCACTGCGGGAAT-GCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Exonerate_coding2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from GeneWise GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATG-GGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctatgggctgtgctggg Alignment from CESAR GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGAT-GGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatcttttggtgtcctcttc Alignment from Spaln_aa2Genome TCGGCTC------ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATGG-GGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGgtaggaacccattcctcctatgctcttggacatctatgggctgtgctggg Alignment from Spaln_nt2Genome GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATG-GGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctatgggctgtgctggg Alignment from Pairagon GTGGATCGGCT-CATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATG-GGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctatgggctgtgctggg Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATGGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctatgggctgtgctggg Alignment from Exonerate_coding2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATGGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctatgggctgtgctggg Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATGGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctatgggctgtgctggg #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTC-GCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagacTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAG-AGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGAC-TTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagacTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAG-AGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGAC-TTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAG-AGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGAC-TTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAG-AGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGCGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGG-AGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGggtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from CESAR GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGCGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGG-AGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGggtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGCGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGCGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGG-AGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Pairagon GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGCGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGG-AGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGCGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGCGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGCGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGG-CGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGC-TGGGGAGGCCCAAAATGGGaggtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGG-CGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCA-AGCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGG-CGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAG-CTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGG-CGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAG-CTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCAC-ACAGGAGGTTTACCATggtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from CESAR gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCA-CACAGGAGGTTTACCATggtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Spaln_aa2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGcTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACA-CAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Spaln_nt2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCAC-ACAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Pairagon GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCAC-ACAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Exonerate_protein2genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCA--CTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACA---CAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Exonerate_coding2genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCA--CTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACA---CAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from GeneWise ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttaggaatgaccgattgctggatctgtatggagttctgtggaggagggtcacacaggaggtttaccatggtatataccagactccatggacctggccttccctgattccaatatagggg #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagcaGATTTCGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGAC-TTCTTTCATTGGCACTCCATACtggtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from CESAR cgGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagcaGATTTCGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGA-CTTCTTTCATTGGCACTCCATACtggtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGACTTCTTTCATTGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGG-CGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGAC-TTCTTTCATTGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Pairagon CGGACTTTGGGGTGTCAGG-CGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGAC-TTCTTTCATTGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGACTTCTTTCATTGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGACTTCTTTCATTGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGACTTCTTTCATTGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgtctaatttgaatttgggtgggttatcctttattatttgccttaggACCCAGAATTTCCACCACTTCCCGCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGC-CACAGCAGAGAGGCTTCTGCAAgtaagtagcagggaataactggtgacttgagcctttgaagacatgacctg Alignment from CESAR gACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgtctaatttgaatttgggtgggttatcctttattatttgccttaggACCCAGAATTTCCACCACTTCCCGCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGC-CACAGCAGAGAGGCTTCTGCAAgtaagtagcagggaataactggtgacttgagcctttgaagacatgacctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTC-AAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgtctaatttgaatttgggtgggttatcctttattatttgccttagGACCCAGAATTTCCACCACTTCCCGcAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCACA-GCAGAGAGGCTTCTGCAAgtaagtagcagggaataactggtgacttgagcctttgaagacatgacctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTT-CCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgtctaatttgaatttgggtgggttatcctttattatttgccttagGACCCAGAATTTCCACCACTTCCCGCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCC-ACAGCAGAGAGGCTTCTGCAAgtaagtagcagggaataactggtgacttgagcctttgaagacatgacctg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCT-CAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgtctaatttgaatttgggtgggttatcctttattatttgccttagGACCCAGAATTTCCACCACTTCCCGCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCC-ACAGCAGAGAGGCTTCTGCAAgtaagtagcagggaataactggtgacttgagcctttgaagacatgacctg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgtctaatttgaatttgggtgggttatcctttattatttgccttagGACCCAGAATTTCCACCACTTCCCGCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCACAGCAGAGAGGCTTCTGCAAgtaagtagcagggaataactggtgacttgagcctttgaagacatgacctg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgtctaatttgaatttgggtgggttatcctttattatttgccttagGACCCAGAATTTCCACCACTTCCCGCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCACAGCAGAGAGGCTTCTGCAAgtaagtagcagggaataactggtgacttgagcctttgaagacatgacctg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgtctaatttgaatttgggtgggttatcctttattatttgccttagGACCCAGAATTTCCACCACTTCCCGCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCACAGCAGAGAGGCTTCTGCAAgtaagtagcagggaataactggtgacttgagcctttgaagacatgacctg #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCA-TTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcacgggacacctgctaatgggaccaagactctcactttgtctccaacagGAGCTCGACTCCCCAGATGATGCCATTGGAACTATCAAACGGGCTCCACTTTTTGGGGCTACCCCACACCGAGTCAACATCTGGTG-TAATGCCCAGTCCTGCTCCCCAggtaagagccaaggactggtaagccacacagtattttggggtagtgctggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCA-TTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcacgggacacctgctaatgggaccaagactctcactttgtctccaacagGAGCTCGACTCCCCAGATGATGCCATTGGAACTATCAAACGGGCTCCACTTTTTGGGGCTACCCCACACCGAGTCAACATCTGGT-GTAATGCCCAGTCCTGCTCCCCAggtaagagccaaggactggtaagccacacagtattttggggtagtgctggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaagactctcactttgtctccaacagGAGCTCGACTCCCCAGATGATGCCATTGGAACTATCAAACGGGCTCCACTTTTTGGGGCTACCCCACACCGAGTCAACATCTGGTGTAATGCCCAGTCCTGCTCCCCAGgtaagagccaaggactggtaagccacacagtattttggggtagtgctggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTG-GGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaagactctcactttgtctccaacagGAGCTCGACTCCCCAGATGATGCCATTGGAACTATCAAACGGGCTCCACTTTTTGGGGCTACCCCACACCGAGTCAACATCTGGTG-TAATGCCCAGTCCTGCTCCCCAGgtaagagccaaggactggtaagccacacagtattttggggtagtgctggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCA-TTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaagactctcactttgtctccaacagGAGCTCGACTCCCCAGATGATGCCATTGGAACTATCAAACGGGCTCCACTTTTTGGGGCTACCCCACACCGAGTCAACATCTGGTG-TAATGCCCAGTCCTGCTCCCCAGgtaagagccaaggactggtaagccacacagtattttggggtagtgctggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaagactctcactttgtctccaacagGAGCTCGACTCCCCAGATGATGCCATTGGAACTATCAAACGGGCTCCACTTTTTGGGGCTACCCCACACCGAGTCAACATCTGGTGTAATGCCCAGTCCTGCTCCCCAGgtaagagccaaggactggtaagccacacagtattttggggtagtgctggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaagactctcactttgtctccaacagGAGCTCGACTCCCCAGATGATGCCATTGGAACTATCAAACGGGCTCCACTTTTTGGGGCTACCCCACACCGAGTCAACATCTGGTGTAATGCCCAGTCCTGCTCCCCAGgtaagagccaaggactggtaagccacacagtattttggggtagtgctggg Alignment from GeneWise AGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTC---------CAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCA--------------------------------------------------- TCACGGGACACCTGCTAATGGGACCAAGACTCTCACTTTGTCTCCAACAGGAGCTCGACTCCCCAGATGATGCCATTGGAACTATCAAACGGGCTCCACTTTTTGGGGCTACCCCACACCGAGTCAACATCTGGTGTAATGCCCAGTCCTGCTCCCCAGGTAAGAGCCAAGGACTGGTAAGCCACACAGTATTTTGGGGTAGTGCTGGG #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGC-AGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggtagtgctgggggctggcatcacaatcattctgactcttccgcaggtACCTTGTCAGCCCCTCCAGCTGGTCCTGATCAGCCCCGCACTGCTACCTACTGCTTGGGCTACCCTGAAGC-ACAGGAGGATCGTGAGgtatttgagacagcagaagggtgggagtgatgctgcagggcgccatctga Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGC-AGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggtagtgctgggggctggcatcacaatcattctgactcttccgcaggtACCTTGTCAGCCCCTCCAGCTGGTCCTGATCAGCCCCGCACTGCTACCTACTGCTTGGGCTACCCTGAAGC-ACAGGAGGATCGTGAGgtatttgagacagcagaagggtgggagtgatgctgcagggcgccatctga Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGC-AGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggtagtgctgggggctggcatcacaatcattctgactcttccgcagGTACCTTGTCAGCCCCTCCAGCTGGTCCTGATcAGCCCCGCACTGCTACCTACTGCTTGGGCTACCCTGAAGCACAGG------AGGATCgtgaggtatttgagacagcagaagggtgggagtgatgctgcagggcgccatctga Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGG-CAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggtagtgctgggggctggcatcacaatcattctgactcttccgcagGTACCTTGTCAGCCCCTCCAGCTGGTCCTGATCAGCCCCGCACTGCTACCTACTGCTTGGGCTACCCTGAAGC-ACAGGAGGATCGTGAGgtatttgagacagcagaagggtgggagtgatgctgcagggcgccatctga Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCTGGCCCTGG-CAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggtagtgctgggggctggcatcacaatcattctgactcttccgcagGTACCTTGTCAGCCCCTCCAGCTGGTCCTGATCAGCCCCGCACTGCTACCTACTGCTTGGGCTACCCTGAAGC-ACAGGAGGATCGTGAGgtatttgagacagcagaagggtgggagtgatgctgcagggcgccatctga Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggtagtgctgggggctggcatcacaatcattctgactcttccgcagGTACCTTGTCAGCCCCTCCAGCTGGTCCTGATCAGCCCCGCACTGCTACCTACTGCTTGGGCTACCCTGAAGCACAGGAGGATCGTGAGgtatttgagacagcagaagggtgggagtgatgctgcagggcgccatctga Alignment from Exonerate_coding2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggtagtgctgggggctggcatcacaatcattctgactcttccgcagGTACCTTGTCAGCCCCTCCAGCTGGTCCTGATCAGCCCCGCACTGCTACCTACTGCTTGGGCTACCCTGAAGCACAGGAGGATCGTGAGgtatttgagacagcagaagggtgggagtgatgctgcagggcgccatctga Alignment from GeneWise -------------------------------------------------GGTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG TTGGGGTAGTGCTGGGGGCTGGCATCACAATCATTCTGACTCTTCCGCAGGTACCTTGTCAGCCCCTCCAGCTGGTCCTGATCAGCCCCGCACTGCTACCTACTGCTTGGGCTACCCTGAAGCACAGGAGGATCGTGAGgtatttgagacagcagaagggtgggagtgatgctgcagggcgccatctga #### Map4k2_ID1651_30 --> 2 - 0 Original Alignment tgTGTCTGCAGGATAGT-GTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagtaTGTCTGCAGGATAGTCGTGCTGGCGTTCTGGAGCCATGGCATGCAAGGCCGAA-CCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from CESAR tgTGTCTGCAGGATAGT-GTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagtaTGTCTGCAGGATAGTCGTGCTGGCGTTCTGGAGCCATGGCATGCAAGGCC-GAACCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Spaln_aa2Genome TGTGTCTGCAGGATAGT-GTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTcGTGCTGGCGTTCTGGAGCCATGGCATGCAAGGCCGAAC-CTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Spaln_nt2Genome TGTGTCTGCAGGATAGT-GTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTCGTGCTGGCGTTCTGGAGCCATGGCATGCAAGGCCGAA-CCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Pairagon TGTGTCTGCAGGATAGT-GTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTCGTGCTGGCGTTCTGGAGCCATGGCATGCAAGGCCGAA-CCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Exonerate_protein2genome TGTGTCTGCAGGATAGT-GTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGA--AGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTCGTGCTGGCGTTCTGGAGCCATGGCATGCAAGGCCGAAC---CTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Exonerate_coding2genome TGTGTCTGCAGGATAGT-GTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGA--AGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTCGTGCTGGCGTTCTGGAGCCATGGCATGCAAGGCCGAAC---CTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from GeneWise --GTGTGTCTGCAGG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagtatgtctgcaggatagtcgtgctggcgttctggagccatggcatgcaaggccgaaccttgataccaatgaggtaggtgaccctaggggtttaattacctccctgagGCCCTATCCTGAGAG #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCC-CGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag aaggcactcactccctataacccttcataatactttatcttcttctgtagcCTAACCATGCCAGGATCCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTG-GGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from CESAR cCTAACCATGCCAGGGTCC-CGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag aaggcactcactccctataacccttcataatactttatcttcttctgtagcCTAACCATGCCAGGATCCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCT-GGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCC-GGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTG-GGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Pairagon CCTAACCATGCCAGGGT-CCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTG-GGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTC---CCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGA--TCCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGG-GCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAAC-TCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACCTCCCCGCTTTTGGACAGGGCCAGCCTTGGCC-GGCCTCCATTCAGAATGGAAAAGACaggtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAAC-TCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACCTCCCCGCTTTTGGACAGGGCCAGCCTTGGC-CGGCCTCCATTCAGAATGGAAAAGACaggtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACCTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAA-CTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACCTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCGG-CCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAA-CTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACCTCCCCGCTTTTGGACAGGGCCAGCCTTGGCC-GGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACCTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACCTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACCTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACA-GGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGCGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCC-TCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACA-GGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGCGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCA-GCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGCGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACA-GGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGCGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAG-CCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACA-GGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGCGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAG-CCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGCGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGCGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGCGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTC-AAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCCAAGATTGGGCAGCCTACTGTTTCTTACTTGC-GAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from CESAR CCCGACAGGACATTTGAGCTC-AAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCCAAGATTGGGCAGCCTACTGTTTCTTACTTG-CGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCCAAGATTGGGCAGCCTACTGTTTCTTACTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTC-AAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCCAAGATTGGGCAGCCTACTGTTTCTTAC-TTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Pairagon CCCGACAGGACATTTGAGCT-CAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCCAAGATTGGGCAGCCTACTGTTTCTTAC-TTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCCAAGATTGGGCAGCCTACTGTTTCTTACTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCCAAGATTGGGCAGCCTACTGTTTCTTACTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCCAAGATTGGGCAGCCTACTGTTTCTTACTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTC-GCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc catgggctatgaggctgggtctctctacacaacaacttcatctcttataggGAGTTGGTGGAACGTGAGGTGACTGACTTTCGCCCGATGGAACCCAGGAGTTGTGGTATATGTGA-CCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACcgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGAC-TTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc catgggctatgaggctgggtctctctacacaacaacttcatctcttataggGAGTTGGTGGAACGTGAGGTGACTGACTTTCGCCCGATGGAACCCAGGAGTTGTGGTATATG-TGACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACcgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTCGCCCGATGGAACCCAGGAGTTGTGGTATATGTGACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTT-CGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTCGCCCGATGGAACCCAGGAGTTGTGGTATATGTG-ACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGAC-TTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTCGCCCGATGGAACCCAGGAGTTGTGGTATATGTG-ACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTCGCCCGATGGAACCCAGGAGTTGTGGTATATGTGACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTCGCCCGATGGAACCCAGGAGTTGTGGTATATGTGACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTCGCCCGATGGAACCCAGGAGTTGTGGTATATGTGACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATT-GAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagtGCACCTGACATTCGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTC-ACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from CESAR tGCACCTGACATT-GAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagtGCACCTGACATTCGAACTCCTGGAAGCATCACCTGCCAAAGCAG-CTCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Spaln_aa2Genome TGCACCTGACATT-GAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTcGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCA-CCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Spaln_nt2Genome TGCACCTGACATT-GAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTCGAACTCCTGGAAGCATCACCTGCCAAAGCAG-CTCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Pairagon TGCACCTGACATT-GAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTCGAACTCCTGGAAGCATCACCTGCCAAAGCAG-CTCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTCGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTCGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTCGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTA-GTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTACGTACCACAGGGAGGCCCGGTGCTCTGTCGAG-TGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTA-GTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTACGTACCACAGGGAGGCCCGGTGCTCTGTCGA-GTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTACGTACCACAGGGAGGCCCGGTGCTCTGTCGAGTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTA-GTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTACGTACCACAGGGAGGCCCGGTGCTCTGTCGAG-TGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTA-GTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTACGTACCACAGGGAGGCCCGGTGCTCTGTCGAG-TGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTACGTACCACAGGGAGGCCCGGTGCTCTGTCGAGTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTACGTACCACAGGGAGGCCCGGTGCTCTGTCGAGTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTACGTACCACAGGGAGGCCCGGTGCTCTGTCGAGTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAA-CACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from CESAR CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAA-CACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Spaln_aa2Genome CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGcTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAAC-ACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Spaln_nt2Genome CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAAC-ACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Pairagon CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAA-CACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Exonerate_protein2genome CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAA--ACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAAC---ACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Exonerate_coding2genome CTACCCTGGAAGTC---ACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAG--CTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAAC-ACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from GeneWise CTACCCTGGAAG-TCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGCTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACACA-GACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagtgGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAAC-TTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagtgGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAA-CTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGcACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACT-TCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAAC-TTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAAC-TTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGAC---CCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTG--CACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACT-TCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAAC-TCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCTGGTGAAACTGAACCTCACAAACAGACATCACACCCAAGCCTCTCT-GCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAAC-TCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCTGGTGAAACTGAACCTCACAAACAGACATCACACCCAAGCCTCTC-TGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCTGGTGAAACTGAACCTCACAAACAGACATCACACCCAAGCCTCTCTGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAA-CTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCTGGTGAAACTGAACCTCACAAACAGACATCACACCCAAGCCTCTCT-GCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAA-CTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCTGGTGAAACTGAACCTCACAAACAGACATCACACCCAAGCCTCTCT-GCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCTGGTGAAACTGAACCTCACAAACAGACATCACACCCAAGCCTCTCTGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCTGGTGAAACTGAACCTCACAAACAGACATCACACCCAAGCCTCTCTGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCTGGTGAAACTGAACCTCACAAACAGACATCACACCCAAGCCTCTCTGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTCACC-TACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa gaagaaactggcaaagtggcctttattactttccttttcttctcccatagaCTTGGCAACTTTACACTACCATATCCCAGTCAGCAGCAGCACACCACTGCACC-CAGCCTGACCCTACAGATGaagtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from CESAR gCTTGGCAACTTCACC-TACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa gaagaaactggcaaagtggcctttattactttccttttcttctcccatagaCTTGGCAACTTTACACTACCATATCCCAGTCAGCAGCAGCACACCACTGCAC-CCAGCCTGACCCTACAGATGaagtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Spaln_aa2Genome GCTTGGCAACTTCACC-TACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACAcTACCATATCCCAGTCAGCAGCAGCACACCACTGCACCC-AGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Spaln_nt2Genome GCTTGGCAACTTCAC-CTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACACTACCATATCCCAGTCAGCAGCAGCACACCACTGCACC-CAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Pairagon GCTTGGCAACTTCAC-CTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACACTACCATATCCCAGTCAGCAGCAGCACACCACTGCACC-CAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Exonerate_protein2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACACTACCATATCCCAGTCAGCAGCAGCACACCACTGCACCCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Exonerate_coding2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACACTACCATATCCCAGTCAGCAGCAGCACACCACTGCACCCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from GeneWise GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACACTACCATATCCCAGTCAGCAGCAGCACACCACTGCACCCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg #### Myrf_ID2718_19 --> 1 - 1 Original Alignment cAGGTCCAGCCAGAGC-TTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccggctccaaagcttccctgtacctctatatctatgcatttattttacagtAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCCA-GACCACTGGACTACCAGGAACACAGCCCTCTTTGCTGCTGggtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from CESAR cAGGTCCAGCCAGAGC-TTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccggctccaaagcttccctgtacctctatatctatgcatttattttacagtAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCC-AGACCACTGGACTACCAGGAACACAGCCCTCTTTGCTGCTGggtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Spaln_aa2Genome CAGGTCCAGCCAGAGC-TTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCcTTTGGGACCACACAGCTCCAACAGTCCTCCAG-ACCACTGGACTACCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Spaln_nt2Genome CAGGTCCAGCCAGAGC-TTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCCA-GACCACTGGACTACCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Pairagon CAGGTCCAGCCAGAG-CTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCCA-GACCACTGGACTACCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Exonerate_protein2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCCAGACCACTGGACTACCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Exonerate_coding2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCCAGACCACTGGACTACCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from GeneWise CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTG--------------------------------------------------- ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCCTTTGGGACCACACAGCTCCAACAGTCCTCCAGACCACTGGACTACCAGGAACACAGCCCTCTTTGCTGCTGGGTGAGTGTCTGGTGGGATCCGATGAGGCCGATGGATGTGTGTGCAGCCCC #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATC-AGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTC-CGTGGTGGTCATGGCCTTCaggtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATC-AGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCT-CCGTGGTGGTCATGGCCTTCaggtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATC-AGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCcAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCC-GTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATC-AGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTC-CGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCAT-CAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCC-GTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTC-ATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAG-CAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from CESAR GAGCGAATCTTC-ATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACA-GCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Spaln_aa2Genome GAGCGAATCTTC-ATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCcATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGC-AACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Spaln_nt2Genome GAGCGAATCTTC-ATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAG-CAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Pairagon GAGCGAATCTT-CATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAG-CAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Exonerate_coding2genome GAGCGAATCTT---CATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATC--TTCCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGAC-AGCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCT-GTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacaggtGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTCGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAA-AACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCT-GTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacaggtGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTCGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAA-AACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTCGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCT-GTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTCGTGGAGGACACAGGGGATGTGGTCTTTG-CAAATGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCT-GTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTCGTGGAGGACACAGGGGATGTGGTCTTTGCAAAT-GGAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTCGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAA---GGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCT--CGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGG-AAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTCGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGCAGGATCTCACGGATGCGGTTAGTGCACTACA-GTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from CESAR GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGCAGGATCTCACGGATGCGGTTAGTGCACT-ACAGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGCAGGATCTCACGGATGCGGTTAGTGCACTACAGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGCAGGATCTCACGGATGCGGTTAGTGCACTACAG-TACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAG-AGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGCAGGATCTCACGGATGCGGTTAGTGCACTACAG-TACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGCAGGATCTCACGGATGCGGTTAGTGCACTACAGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGCAGGATCTCACGGATGCGGTTAGTGCACTACAGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGCAGGATCTCACGGATGCGGTTAGTGCACTACAGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTG-CCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaaatttaccctgcccccaaatgatccatcactttctgtgcacagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCCAGATACAGTCTTTCACCCTGGCCGTGTGGGTATCA-CACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagggctgtggcccatggggcttccctgcataactggagggggtaggg Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTG-CCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaaatttaccctgcccccaaatgatccatcactttctgtgcacagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCCAGATACAGTCTTTCACCCTGGCCGTGTGGGTA-TCACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagggctgtggcccatggggcttccctgcataactggagggggtaggg Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaaatttaccctgcccccaaatgatccatcactttctgtgcacagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCCAGATACAGTCTTTCACCCTGGCCGTGTGGGTATCACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagggctgtggcccatggggcttccctgcataactggagggggtaggg Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCC-AGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaaatttaccctgcccccaaatgatccatcactttctgtgcacagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCCAGATACAGTCTTTCACCCTGGCCGTGTGGGTATC-ACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagggctgtggcccatggggcttccctgcataactggagggggtaggg Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTG-CCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaaatttaccctgcccccaaatgatccatcactttctgtgcacagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCCAGATACAGTCTTTCACCCTGGCCGTGTGGGTATC-ACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagggctgtggcccatggggcttccctgcataactggagggggtaggg Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaaatttaccctgcccccaaatgatccatcactttctgtgcacagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCCAGATACAGTCTTTCACCCTGGCCGTGTGGGTATCACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagggctgtggcccatggggcttccctgcataactggagggggtaggg Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaaatttaccctgcccccaaatgatccatcactttctgtgcacagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCCAGATACAGTCTTTCACCCTGGCCGTGTGGGTATCACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagggctgtggcccatggggcttccctgcataactggagggggtaggg Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaaatttaccctgcccccaaatgatccatcactttctgtgcacagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCCAGATACAGTCTTTCACCCTGGCCGTGTGGGTATCACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagggctgtggcccatggggcttccctgcataactggagggggtaggg #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTGGCCCTC-CAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gaatggctacaggtatccctgagcgttagcaatggttttcttcctttcaggTATTTCATGCTGGTGGTGGCCCTCCCAGGCACATGCACAGAACCAAAACTACACCC-GGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttaaaggtaatgtcctccccctcctctgaactg Alignment from CESAR gTATTTCATGCTGGTGGTGGCCCTC-CAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gaatggctacaggtatccctgagcgttagcaatggttttcttcctttcaggTATTTCATGCTGGTGGTGGCCCTCCCAGGCACATGCACAGAACCAAAACTACACC-CGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttaaaggtaatgtcctccccctcctctgaactg Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gaatggctacaggtatccctgagcgttagcaatggttttcttcctttcagGTATTTCATGCTGGTGGTGGCCCTCCCAGGCACATGCACAGAACCAAAACTACACCCGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttaaaggtaatgtcctccccctcctctgaactg Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTGGCCCTC-CAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gaatggctacaggtatccctgagcgttagcaatggttttcttcctttcagGTATTTCATGCTGGTGGTGGCCCTCCCAGGCACATGCACAGAACCAAAACTACACCC-GGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttaaaggtaatgtcctccccctcctctgaactg Alignment from Pairagon GTATTTCATGCTGGTGGTGGCCCT-CCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gaatggctacaggtatccctgagcgttagcaatggttttcttcctttcagGTATTTCATGCTGGTGGTGGCCCTCCCAGGCACATGCACAGAACCAAAACTACAC-CCGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttaaaggtaatgtcctccccctcctctgaactg Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gaatggctacaggtatccctgagcgttagcaatggttttcttcctttcagGTATTTCATGCTGGTGGTGGCCCTCCCAGGCACATGCACAGAACCAAAACTACACCCGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttaaaggtaatgtcctccccctcctctgaactg Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gaatggctacaggtatccctgagcgttagcaatggttttcttcctttcagGTATTTCATGCTGGTGGTGGCCCTCCCAGGCACATGCACAGAACCAAAACTACACCCGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttaaaggtaatgtcctccccctcctctgaactg Alignment from GeneWise GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gaatggctacaggtatccctgagcgttagcaatggttttcttcctttcagGTATTTCATGCTGGTGGTGGCCCTCCCAGGCACATGCACAGAACCAAAACTACACCCGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtgagtatcatttctccttaaaggtaatgtcctccccctcctctgaactg #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTG-GAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagcTATGAAGTACAGCTGCGAAAGCAAGGTACGGCAGAAAGGCCTAGGGAAGT-TCTCATTCAGATCCTCCAGCTCATGGCCAACaggtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from CESAR cTATGAAGTGCAGCTG-GAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagcTATGAAGTACAGCTGCGAAAGCAAGGTACGGCAGAAAGGCCTAGGGAAGT-TCTCATTCAGATCCTCCAGCTCATGGCCAACaggtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAAGGTACGGCAGAAAGGCCTAGGGAAGTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTG-GAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAAGGTACGGCAGAAAGGCCTAGGGAAGTTC-TCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Pairagon CTATGAAGTGCAGCTG-GAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAAGGTACGGCAGAAAGGCCTAGGGAAGTT-CTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAAGGTACGGCAGAAAGGCCTAGGGAAGTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAAGGTACGGCAGAAAGGCCTAGGGAAGTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAAGGTACGGCAGAAAGGCCTAGGGAAGTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGT-GAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg tagagggcagtctactgatgtccctgccccctcttttaaaattctcttaggTATGAGCAAAGTCGAGTGGGGCTGGAAGGACCGGGAAAAGCGGG-GGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCGGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTACtggtaggtacttatgccatcagtgtaggcacttatgccatcagtggagtaga Alignment from CESAR gTATGAGCAAAGT-GAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg tagagggcagtctactgatgtccctgccccctcttttaaaattctcttaggTATGAGCAAAGTCGAGTGGGGCTGGAAGGACCGGGAAAAGCGG-GGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCGGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTACtggtaggtacttatgccatcagtgtaggcacttatgccatcagtggagtaga Alignment from Spaln_aa2Genome GCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG tagagggcagtctactgatgtccctgccccctcttttaaaattctcttaggtatgagCAAAGTCGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGG-GAAATGACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCGGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTACTGgtaggtacttatgccatcagtgtaggcacttatgccatcagtggagtaga Alignment from Spaln_nt2Genome GTATGAGCAAAGT-GAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG tagagggcagtctactgatgtccctgccccctcttttaaaattctcttagGTATGAGCAAAGTCGAGTGGGGCTGGAAGGACCGGGAAAAGCGGG-GGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCGGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTACTGgtaggtacttatgccatcagtgtaggcacttatgccatcagtggagtaga Alignment from Pairagon GTATGAGCAAAGT-GAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG tagagggcagtctactgatgtccctgccccctcttttaaaattctcttagGTATGAGCAAAGTCGAGTGGGGCTGGAAGGACCGGGAAAAGCGGG-GGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCGGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTACTGgtaggtacttatgccatcagtgtaggcacttatgccatcagtggagtaga Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG tagagggcagtctactgatgtccctgccccctcttttaaaattctcttagGTATGAGCAAAGTCGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCGGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTACTGgtaggtacttatgccatcagtgtaggcacttatgccatcagtggagtaga Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG tagagggcagtctactgatgtccctgccccctcttttaaaattctcttagGTATGAGCAAAGTCGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCGGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTACTGgtaggtacttatgccatcagtgtaggcacttatgccatcagtggagtaga Alignment from GeneWise GCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG tagagggcagtctactgatgtccctgccccctcttttaaaattctcttaggtatgagCAAAGTCGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGG-GAAATGACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCGGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTACTGgtaggtacttatgccatcagtgtaggcacttatgccatcagtggagtaga #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTG-CTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgactactaatagattttatttctctctctttttcctttagaGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACT-AGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtatgttcaagtccaggaatgtcagggggggaagggaaattttgcttctg Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTG-CTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgactactaatagattttatttctctctctttttcctttagaGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGAC-TAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtatgttcaagtccaggaatgtcagggggggaagggaattgttcttttct Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaagggaaattttgcttctg Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTG-CTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACT-AGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaagggaaattttgcttctg Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTG-CTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACT-AGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaagggaaattttgcttctg Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaagggaaattttgcttctg Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaagggaaattttgcttctg Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGGTATGTTCAAGTCCAGGAATGTCAGGGGGGGAAGGGAAATTTTGCTTCTG #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACC-TCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagtAACCTCACGGGAACCCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTG-GTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGaggtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from CESAR tAACCTCACCGGAACC-TCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagtAACCTCACGGGAACCCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGT-GGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGaggtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Spaln_aa2Genome TAACCTCACCGGAACC-TCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCcTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGG-TACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Spaln_nt2Genome TAACCTCACCGGAACC-TCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTG-GTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Pairagon TAACCTCACCGGAA-CCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTG-GTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Exonerate_coding2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGC-AAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATCA-TGTGGACATCTCTGTTTTTtgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from CESAR GAGTTTCTCAGC-AAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATC-ATGTGGACATCTCTGTTTTTtgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATCATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Spaln_nt2Genome GAGTTTCTCAGC-AAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATC-ATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Pairagon GAGTTTCTCAG-CAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATC-ATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATCATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Exonerate_coding2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATCATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from GeneWise GGAGCGCACGGT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcaggagtttctcagccaaactgcaagagcgcacagtggactatatcatgtggacatctctgttttttgtgagttagggttggccagctgggctcaggctgggaagGGGACGGGTTAG #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagccAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCT-TTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from CESAR ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagccAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTC-TTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Spaln_aa2Genome GGCACAGGGAACACCTCCTGTACAA- gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagccaatactactctccagCGCCCAGGGAGCACCACCTGTACAAGgtgtgctcttctttcaaccaaagatgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCT-TTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Pairagon CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTTT-CAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAA gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGgtgtgctcttctttcaaccaaagatgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAA gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGgtgtgctcttctttcaaccaaagatgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from GeneWise gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagccaatactactctccagcgcccagggagcaccacctgtacaaggtgtgctcttctttcaaccaaagatgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTG-GCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccaggtTTTAGCAGCCACCAAGCTGTCCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTG-CAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtgagccaaggaactctgcatccacaggcagggccctggtacctatctca Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTG-GCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccaggtTTTAGCAGCCACCAAGCTGTCCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGT-GCAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtgagccaaggaactctgcatccacaggcagggcctttattatgtgacac Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGCAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccctggtacctatctca Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTG-GCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTG-CAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccctggtacctatctca Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGT-GGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTG-CAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccctggtacctatctca Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGCAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccctggtacctatctca Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGCAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccctggtacctatctca Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG--------------------------------------------------- gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGCAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGGTGAGCCAAGGAACTCTGCATCCACAGGCAGGGCCCTGGTACCTATCTCA #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCT-GGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gatagtgtttaatctcatcttagttaattcccctgaccccttgttcccaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTCGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCA-CATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTGAAAGAGCTGATTGAGAAACATGCTggtaagtctggaaccaactcaagagcagtgcttcagagagggctctgtaga Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCT-GGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gatagtgtttaatctcatcttagttaattcccctgaccccttgttcccaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTCGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGT-TCACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTGAAAGAGCTGATTGAGAAACATGCTggtaagtctggaaccaactcaagagcagtgcttcagagagggctctgtaga Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatctcatcttagttaattcccctgaccccttgttcccagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTCGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactcaagagcagtgcttcagagagggctctgtaga Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCT-GGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatctcatcttagttaattcccctgaccccttgttcccagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTCGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTG-TTCACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactcaagagcagtgcttcagagagggctctgtaga Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCT-GGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatctcatcttagttaattcccctgaccccttgttcccagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTCGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTC-ACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactcaagagcagtgcttcagagagggctctgtaga Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatctcatcttagttaattcccctgaccccttgttcccagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTCGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactcaagagcagtgcttcagagagggctctgtaga Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGG---CTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatctcatcttagttaattcccctgaccccttgttcccagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCT--CGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTT-CACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactcaagagcagtgcttcagagagggctctgtaga Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTGGT------------------------------------------------ gatagtgtttaatctcatcttagttaattcccctgaccccttgttcccagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTCGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTGAAAGAGCTGATTGAGAAACATGCTGGTAAGTCTGGAACCAACTCAAGAGCAGTGCTTCAGAGAGGGCTCTGTAGA #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATT-ATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg agagccctcatgtcaagctgcatccaaatgttttttcctgttgattccagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATACATGATCCAGAAACTTCAAAGGCAGCGTCTCCAAT-CAAACCACAGGGTCTTGCTggtgcgttgatcaaaggtgtcctgggaggtgttcctacaggggccaaaaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATT-ATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg agagccctcatgtcaagctgcatccaaatgttttttcctgttgattccagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATACATGATCCAGAAACTTCAAAGGCAGCGTCTCCAAT-CAAACCACAGGGTCTTGCTggtgcgttgatcaaaggtgtcctgggaggtgttcctacaggggccaaaaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATT-ATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGC---CTTACAG agagccctcatgtcaagctgcatccaaatgttttttcctgttgattccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAcATGATCCAGAAACTTCAAAGGCAGCGTCTCCAATCAAACCACAGGGTCTTGCTGGTGCgttgatcaaaggtgtcctgggaggtgttcctacaggggccaaaaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATT-ATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagccctcatgtcaagctgcatccaaatgttttttcctgttgattccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATACATGATCCAGAAACTTCAAAGGCAGCGTCTCCAAT-CAAACCACAGGGTCTTGCTGgtgcgttgatcaaaggtgtcctgggaggtgttcctacaggggccaaaaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGAT-TATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagccctcatgtcaagctgcatccaaatgttttttcctgttgattccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATACATGATCCAGAAACTTCAAAGGCAGCGTCTCCAAT-CAAACCACAGGGTCTTGCTGgtgcgttgatcaaaggtgtcctgggaggtgttcctacaggggccaaaaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagccctcatgtcaagctgcatccaaatgttttttcctgttgattccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATACATGATCCAGAAACTTCAAAGGCAGCGTCTCCAATCAAACCACAGGGTCTTGCTGgtgcgttgatcaaaggtgtcctgggaggtgttcctacaggggccaaaaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagccctcatgtcaagctgcatccaaatgttttttcctgttgattccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATACATGATCCAGAAACTTCAAAGGCAGCGTCTCCAATCAAACCACAGGGTCTTGCTGgtgcgttgatcaaaggtgtcctgggaggtgttcctacaggggccaaaaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagccctcatgtcaagctgcatccaaatgttttttcctgttgattccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATACATGATCCAGAAACTTCAAAGGCAGCGTCTCCAATCAAACCACAGGGTCTTGCTGgtgcgttgatcaaaggtgtcctgggaggtgttcctacaggggccaaaaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAG-GAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGCGAGCTGAAGAAAGTCATGGATCTGAGCATTGTAC-GCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAG-GAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGCGAGCTGAAGAAAGTCATGGATCTGAGCATTGTAC-GCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGCGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAG-GAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGCGAGCTGAAGAAAGTCATGGATCTGAGCATTGTAC-GCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Pairagon ---------------------------------------------TACAGAGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAG-GAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA GGGCCAAAAAGAACAGCTCAGCGCTTGCCTTTCCTTCATTATCAATACAGAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGCGAGCTGAAGAAAGTCATGGATCTGAGCATTGTAC-GCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGCGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGCGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGCGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAACCTGAAGATCTCC-CGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagaaTCTCCAGGGGCCTTGAACCTGAAGATCTCCCCAGATGGACAAAACAGCAGGTTCAGTGCATGGGGGAG-TGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAggtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCC-CGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagaaTCTCCAGGGGCCTTGAACCTGAAGATCTCCCCAGATGGACAAAACAGCAGGTTCAGTGCATGGGGGA-GTGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAggtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCCAGATGGACAAAACAGCAGGTTCAGTGCATGGGGGAGTGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGA-ATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCCAGATGGACAAAACAGCAGGTTCAGTGCATGGGGGAG-TGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGA-ATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCCAGATGGACAAAACAGCAGGTTCAGTGCATGGGGGAG-TGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCCAGATGGACAAAACAGCAGGTTCAGTGCATGGGGGAGTGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCCAGATGGACAAAACAGCAGGTTCAGTGCATGGGGGAGTGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCCAGATGGACAAAACAGCAGGTTCAGTGCATGGGGGAGTGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTG-TTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagccCGTGAATACAATGCACGCCTGCTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACT-TGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from CESAR ctCGCGAGTACAACGCGCGCCTG-TTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagccCGTGAATACAATGCACGCCTGCTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGAC-TTGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGCTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTTGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTG-TTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGCTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACT-TGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTG-TTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGCTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACT-TGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGCTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTTGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGCTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTTGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGCTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTTGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttttgaagaacaagtgaagaacaactggatcccacctgccctgcagcCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTGTCATTGAGCAGATCGCCCCATGTCATTTACCATGCTCAGTACCTTGGCGTAA-AAACCTCACCAACCACCTGCATCAGgtgagaggaagcattttttaagagattgaaagcaagaagtctaaagctgg Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttttgaagaacaagtgaagaacaactggatcccacctgccctgcagcCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTGTCATTGAGCAGATCGCCCCATGTCATTTACCATGCTCAGTACCTTGGCGTA-AAAACCTCACCAACCACCTGCATCAGgtgagaggaagcattttttaagagattgaaagcaagaagtctaaagctgg Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttttgaagaacaagtgaagaacaactggatcccacctgccctgcagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTGTCATTGAGCAGATCGCCCCATGTCATTTACCATGCTCAGTACCTTGGCGTAAAAACCTCACCAACCACCTGCATCAGgtgagaggaagcattttttaagagattgaaagcaagaagtctaaagctgg Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCC-ACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttttgaagaacaagtgaagaacaactggatcccacctgccctgcagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTGTCATTGAGCAGATCGCCCCATGTCATTTACCATGCTCAGTACCTTGGCGT-AAAAACCTCACCAACCACCTGCATCAGgtgagaggaagcattttttaagagattgaaagcaagaagtctaaagctgg Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAG-CCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttttgaagaacaagtgaagaacaactggatcccacctgccctgcagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTGTCATTGAGCAGATCGCCCCATGTCATTTACCATGCTCAGTACCTTGGCGTAA-AAACCTCACCAACCACCTGCATCAGgtgagaggaagcattttttaagagattgaaagcaagaagtctaaagctgg Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGCGTC--ATCAACCTCACCAACCACCTGCACCAG ggggttttgaagaacaagtgaagaacaactggatcccacctgccctgcagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTGTCATTGAGCAGATCGCCCCATGTCATTTACCATGCTCAGTACCTTGGCGTAAA---AACCTCACCAACCACCTGCATCAGgtgagaggaagcattttttaagagattgaaagcaagaagtctaaagctgg Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCC-CACGTCATTTATCACGCTCAGTACCTCGGCGTC--ATCAACCTCACCAACCACCTGCACCAG ggggttttgaagaacaagtgaagaacaactggatcccacctgccctgcagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTGTCATTGAGCAGATCGCCCCATGTCATTTACCATGCTCAGTACCTTGGCGTAAA---AACCTCACCAACCACCTGCATCAGgtgagaggaagcattttttaagagattgaaagcaagaagtctaaagctgg Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttttgaagaacaagtgaagaacaactggatcccacctgccctgcagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTGTCATTGAGCAGATCGCCCCATGTCATTTACCATGCTCAGTACCTTGGCGTAAAAACCTCACCAACCACCTGCATCAGgtgagaggaagcattttttaagagattgaaagcaagaagtctaaagctgg #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGC-TTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGC-GGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGggtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGC-TTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTG-CGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGggtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCGGATAGGCATGGAGACTCTGCCCTCCACTTGgctcatacctgtgaaaatgtattgccatcttggacctcccacgagCTCAGAGCAGGT---GCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGC-TTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCT--CCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGC-GGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAG-CTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGC-GGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACctgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACctgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAG-AGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttaaaggccatttaggatcaatgctgcatctcagcctgtctcttctacaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGCAGGCAAGGGGGCCGAACTGCCCTACATCTAG-GACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtacctattcaactatgcggactatggacaggataagtgagactgaatga Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAG-AGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttaaaggccatttaggatcaatgctgcatctcagcctgtctcttctacaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGCAGGCAAGGGGGCCGAACTGCCCTACATCTA-GGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtacctattcaactatgcggactatggacaggataagtgagactgaatga Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttaaaggccatttaggatcaatgctgcatctcagcctgtctcttctacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGCAGGCAAGGGGGCCGAACTGCCCTACATCTAGGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtacctattcaactatgcggactatggacaggataagtgagactgaatga Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAG-AGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttaaaggccatttaggatcaatgctgcatctcagcctgtctcttctacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGCAGGCAAGGGGGCCGAACTGCCCTACATCTAG-GACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtacctattcaactatgcggactatggacaggataagtgagactgaatga Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAG-AGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttaaaggccatttaggatcaatgctgcatctcagcctgtctcttctacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGCAGGCAAGGGGGCCGAACTGCCCTACATCTAG-GACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtacctattcaactatgcggactatggacaggataagtgagactgaatga Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttaaaggccatttaggatcaatgctgcatctcagcctgtctcttctacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGCAGGCAAGGGGGCCGAACTGCCCTACATCTAGGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtacctattcaactatgcggactatggacaggataagtgagactgaatga Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttaaaggccatttaggatcaatgctgcatctcagcctgtctcttctacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGCAGGCAAGGGGGCCGAACTGCCCTACATCTAGGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtacctattcaactatgcggactatggacaggataagtgagactgaatga Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ttaaaggccatttaggatcaatgctgcatctcagcctgtctcttctacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGCAGGCAAGGGGGCCGAACTGCCCTACATCTAGGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtacctattcaactatgcggactatggacaggataagtgagactgaatga #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGG-ACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGCACCTTTGCTGGAAACACACCACTCCATCTGGCAG-CGGACTCGGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTggtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from CESAR CTCCATGCTAATGTGAATGCCCGG-ACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGCACCTTTGCTGGAAACACACCACTCCATCTGGCAG-CGGACTCGGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTggtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGCACCTTTGCTGGAAACACACCACTCCATCTGGCAGCGGACTCGGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGG-ACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGCACCTTTGCTGGAAACACACCACTCCATCTGGCAGCG-GACTCGGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGG-ACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGCACCTTTGCTGGAAACACACCACTCCATCTGGCAGC-GGACTCGGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGCACCTTTGCTGGAAACACACCACTCCATCTGGCAGCGGACTCGGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGCACCTTTGCTGGAAACACACCACTCCATCTGGCAGCGGACTCGGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGCACCTTTGCTGGAAACACACCACTCCATCTGGCAGCGGACTCGGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCCC-GGCCCCACCCACCCCCGTAggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCC-CGGCCCCACCCACCCCCGTAggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCC cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAcAATGCCGCTCAGAACACCACAGAGCCACCCCGGCCCCACCCACCCCCgtaggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCCC-GGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCCC-GGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCCCGGCCCCACCCACCCCCGTAGGtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTA-AATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCCCGGCCCCACCCACCCCCGTAGGtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTACAATGCCGCTCAGAACACCACAGAGCCACCCCGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAG-CTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagggCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACA-GAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatttgtctctcattctctgccagCT Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAG-CTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagggCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGAA-AACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcccatgaccatctgatttcagCT Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAG-CTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGcCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGAAA-ACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatttgtctctcattctctgccagCT Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAG-CTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACA-GAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatttgtctctcattctctgccagCT Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAG-CTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACA-GAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatttgtctctcattctctgccagCT Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatttgtctctcattctctgccagCT Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCT---GGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAG--CCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAG-AAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatttgtctctcattctctgccagCT Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG------------------------------------------------CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGGTAAGACAGCTGGACCCTATGCTGAATTTGTCTCTCATTCTCTGCCAGCT #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gagtgatttaaccaaatttgagtatgtgatttttcaacttttttttataggaGATGTTTTGAATATTGACCCCCATGAAATTTTATACACATCTCTTCCAGACAC-GTTTACGTTACATGCAggtaagtcattgtggccgaaagcctttttgatcagagtagtagccaatgag Alignment from CESAR gtGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gagtgatttaaccaaatttgagtatgtgatttttcaacttttttttataggaGATGTTTTGAATATTGACCCCCATGAAATTTTATACACATCTCTTCCAGACA-CGTTTACGTTACATGCAggtaagtcattgtggccgaaagcctttttgatcagagtagtagccaatgag Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gagtgatttaaccaaatttgagtatgtgatttttcaacttttttttatagGAGATGTTTTGAATATTGACcCCCATGAAATTTTATACACATCTCTTCCAGACACG-TTTACGTTACATGCAGgtaagtcattgtggccgaaagcctttttgatcagagtagtagccaatgag Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGA-CCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gagtgatttaaccaaatttgagtatgtgatttttcaacttttttttatagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACACATCTCTTCCAGACAC-GTTTACGTTACATGCAGgtaagtcattgtggccgaaagcctttttgatcagagtagtagccaatgag Alignment from Pairagon GTGATGTTTTAAATATTGA-CCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gagtgatttaaccaaatttgagtatgtgatttttcaacttttttttatagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACACATCTCTTCCAGACAC-GTTTACGTTACATGCAGgtaagtcattgtggccgaaagcctttttgatcagagtagtagccaatgag Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gagtgatttaaccaaatttgagtatgtgatttttcaacttttttttatagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACACATCTCTTCCAGACACGTTTACGTTACATGCAGgtaagtcattgtggccgaaagcctttttgatcagagtagtagccaatgag Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gagtgatttaaccaaatttgagtatgtgatttttcaacttttttttatagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACACATCTCTTCCAGACACGTTTACGTTACATGCAGgtaagtcattgtggccgaaagcctttttgatcagagtagtagccaatgag Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAATTC---TATACACATCTCTACAAGACACTGTTCACATTACATGCAG gagtgatttaaccaaatttgagtatgtgatttttcaacttttttttatagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACACATCTCTTCCAGACACG---TTTACGTTACATGCAGgtaagtcattgtggccgaaagcctttttgatcagagtagtagccaatgag #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gtaaagaacagaaagcatttttgttcttactcttctttcttctcttctagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACAAggtgagttagtccatttggtctcctttcccctatcactgaagagtgattta Alignment from CESAR GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gtaaagaacagaaagcatttttgttcttactcttctttcttctcttctagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACAAggtgagttagtccatttggtctcctttcccctatcactgaagagtgattta Alignment from Spaln_aa2Genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGGTG gtaaagaacagaaagcatttttgttcttactcttctttcttctcttctagGAACTAAGTTATcCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACAAGGTGAgttagtccatttggtctcctttcccctatcactgaagagtgattta Alignment from Spaln_nt2Genome GAGCTAAGTTATC-AAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gtaaagaacagaaagcatttttgttcttactcttctttcttctcttctagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACAAGgtgagttagtccatttggtctcctttcccctatcactgaagagtgattta Alignment from Pairagon GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gtaaagaacagaaagcatttttgttcttactcttctttcttctcttctagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACAAGgtgagttagtccatttggtctcctttcccctatcactgaagagtgattta Alignment from Exonerate_protein2genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA gtaaagaacagaaagcatttttgttcttactcttctttcttctcttctagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACAAGgtgagttagtccatttggtctcctttcccctatcactgaagagtgattta Alignment from Exonerate_coding2genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA gtaaagaacagaaagcatttttgttcttactcttctttcttctcttctagGAACTAAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACAAGgtgagttagtccatttggtctcctttcccctatcactgaagagtgattta Alignment from GeneWise ---GAGCTA gtaaagaacagaaagcatttttgttcttactcttctttcttctcttctaggaactaagttatccaagaaagtctccattgtgttcaaactgcttttcatatctttctggacaaggtgagttagtccatttggtctcctttcccctatcactgaagAGTGATTTA #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGA-CTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCA-GTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGA-CTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGC-AGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGA-CTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGcCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCAG-TTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGAC-TTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCA-GTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGA-CTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCT------------------------------------------------------- gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCA-GTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGGTGAGTTGGAAGGCATAAGATGGTGACAACAGCTGAGTTTAGCATAGGAC Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGA-CTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGC--ATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCAG---TTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGA-CTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGC--ATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCAG---TTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGA-CTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCAG-TTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGAT-GAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTggtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from CESAR CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTC-GATGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTggtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Spaln_nt2Genome CTCAGTGTGGATGATT-TCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCG-ATGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Pairagon CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCG-ATGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCC-TCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG acggagacttggatgtagttgcataactccccatcctgttttctccctagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGATCTCTATGCAGCCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCA-AGCTGCCCATGTCCTGgtaagaaatgttccttgcaactgacagttgactggacaacatagttgata Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCC-TCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG acggagacttggatgtagttgcataactccccatcctgttttctccctagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGATCTCTATGCAGCCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCA-AGCTGCCCATGTCCTGgtaagaaatgttccttgcaactgacagttgactggacaacatagttgata Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCC-TCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG acggagacttggatgtagttgcataactccccatcctgttttctccctagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGATCTCTATGCAGCCcTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAA-GCTGCCCATGTCCTGgtaagaaatgttccttgcaactgacagttgactggacaacatagttgata Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGG-CCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG acggagacttggatgtagttgcataactccccatcctgttttctccctagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGATCTCTATGCAGCCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCA-AGCTGCCCATGTCCTGgtaagaaatgttccttgcaactgacagttgactggacaacatagttgata Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGG-CCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG acggagacttggatgtagttgcataactccccatcctgttttctccctagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGATCTCTATGCAGCCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCA-AGCTGCCCATGTCCTGgtaagaaatgttccttgcaactgacagttgactggacaacatagttgata Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCC-TCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTC--AGAGCTGCCCATGTCCTG acggagacttggatgtagttgcataactccccatcctgttttctccctagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGATCTCTATGCAGCCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAA---GCTGCCCATGTCCTGgtaagaaatgttccttgcaactgacagttgactggacaacatagttgata Alignment from Exonerate_coding2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCC-TCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTC--AGAGCTGCCCATGTCCTG acggagacttggatgtagttgcataactccccatcctgttttctccctagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGATCTCTATGCAGCCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAA---GCTGCCCATGTCCTGgtaagaaatgttccttgcaactgacagttgactggacaacatagttgata Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG acggagacttggatgtagttgcataactccccatcctgttttctccctagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGATCTCTATGCAGCCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAAGCTGCCCATGTCCTGgtaagaaatgttccttgcaactgacagttgactggacaacatagttgata #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCCCTGCAGCAC---G-TGTCTATTCAGGGggtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from CESAR AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCCCTGCAGCAC---G-TGTCTATTCAGGGggtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Spaln_aa2Genome AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGcAAGATTGGCTCCTACACAGGCCCCCTGCAGCACGT----GTCTATTCAGGGGgtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Spaln_nt2Genome AAAACTGGAAAACTGA-AAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCCCTGCAGCACG----TGTCTATTCAGGGGgtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Pairagon AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCCCTGCAGCACG----TGTCTATTCAGGGGgtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Exonerate_protein2genome AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCAC tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCCCTGCAGCACgtgtctattcagggggtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Exonerate_coding2genome AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCAC tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCCCTGCAGCACgtgtctattcagggggtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from GeneWise tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagaaaactggaaaactgcaagattggctcctacacaggccccctgcagcacgtgtctattcagggggtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacaggTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGG-ACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from CESAR gTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacaggTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGAGTG-GGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Spaln_aa2Genome GTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTcTCAGAGGAGGTCAGGAGTTATTACCTGAGTGG-GGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Spaln_nt2Genome GTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGAGT-GGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Pairagon GTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGAGT-GGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTA-GAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagtTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTGGACCTACGAAGTACCCAAGGAGCATGTCTGGGGGGTCC-GCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTA-GAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagtTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTGGACCTACGAAGTACCCAAGGAGCATGTCTGGGGGGTC-CGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTA-GAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTGGACCTAcGAAGTACCCAAGGAGCATGTCTGGGGGGTCCG-CAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAA---TACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTA-GAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTGGACCTACGAAGTACCCAAGGAGCATGTCTGGGGGGTCC-GCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTA-GAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTGGACCTACGAAGTACCCAAGGAGCATGTCTGGGGGGTCC-GCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTGGACCTACGAAGTACCCAAGGAGCATGTCTGGGGGGTCCGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTGGACCTACGAAGTACCCAAGGAGCATGTCTGGGGGGTCCGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTGGACCTACGAAGTACCCAAGGAGCATGTCTGGGGGGTCCGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATAGTC-CCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCATAGTCCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGA-CCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from CESAR GAAAAGGCAACCATAGTC-CCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCATAGTCCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGA-CCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Spaln_aa2Genome GAAAAGGCAACCATAGTC-CCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCATAGTCcCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAC-CTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Spaln_nt2Genome GAAAAGGCAACCATAGT-CCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCATAGTCCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAC-CTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Pairagon GAAAAGGCAACCATAGT-CCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCATAGTCCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGA-CCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCATAGTCCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGACCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Exonerate_coding2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCATAGTCCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGACCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCATAGTCCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGACCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTAT-GACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGGCTTCTGAGCATGATTCAGAGCA-ATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from CESAR ATTCCTTATGGTAGAAAGTAT-GACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGGCTTCTGAGCATGATTCAGAGC-AATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTAT-GACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATcGACAAAACATGGCTTCTGAGCATGATTCAGAGCAA-TGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTAT-GACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGGCTTCTGAGCATGATTCAGAGCAA-TGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Pairagon ATTCCTTATGGTAGAAAGTAT-GACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGGCTTCTGAGCATGATTCAGAGC-AATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGGCTTCTGAGCATGATTCAGAGCAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGGCTTCTGAGCATGATTCAGAGCAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGGCTTCTGAGCATGATTCAGAGCAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTCGCTCATTTTTTTGTGGAGGATGCAACTACTGGCTCCACATTAA-AGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from CESAR TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTCGCTCATTTTTTTGTGGAGGATGCAACTACTGGCTCCACATTAA-AGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTCGCTCATTTTTTTGTGGAGGATGCAACTACTGGCTCCACATTAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTCGCTCATTTTTTTGTGGAGGATGCAACTACTGGCTCCACATTAAA-GGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Pairagon TTTCACTATGAAAATACACG-GGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTCGCTCATTTTTTTGTGGAGGATGCAACTACTGGCTCCACATTAAA-GGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTCGCTCATTTTTTTGTGGAGGATGCAACTACTGGCTCCACATTAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTCGCTCATTTTTTTGTGGAGGATGCAACTACTGGCTCCACATTAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTCGCTCATTTTTTTGTGGAGGATGCAACTACTGGCTCCACATTAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTT-CTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagatTTGGTGGCTCAGAACATTGTTGTTGTTCCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCC-CATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTT-CTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagatTTGGTGGCTCAGAACATTGTTGTTGTTCCTAAACCGCAGGAGCTGCATGGCAGCCACCCTC-CCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTT-CTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTcCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCC-ATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTT-CTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCCTAAACCGCAGGAGCTGCATGGCAGCCACCCT-CCCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTT-CTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCCTAAACCGCAGGAGCTGCATGGCAGCCACCCT-CCCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcaggTACTATGTCATTTGTCGACTCAGGAGACCGTCAGGGTCTTCTGTATGCCTACC-TGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCaggtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from CESAR gTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcaggTACTATGTCATTTGTCGACTCAGGAGACCGTCAGGGTCTTCTGTATGCCTAC-CTGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCaggtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Spaln_aa2Genome GTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTcGACTCAGGAGACCGTCAGGGTCTTCTGTATGCCTACCT-GATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Spaln_nt2Genome GTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTCGACTCAGGAGACCGTCAGGGTCTTCTGTATGCCTACC-TGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Pairagon GTACTATGTAATTTAT-GACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTCGACTCAGGAGACCGTCAGGGTCTTCTGTATGCCTACC-TGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Exonerate_protein2genome GTACTATGTAATT-TATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTAC--CATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTCGACTCAGGAGACCGTCAGGGTCTTCTGTATGCCTACCT---GATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Exonerate_coding2genome GTACTATGTAATT-TATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTAC--CATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTCGACTCAGGAGACCGTCAGGGTCTTCTGTATGCCTACCT---GATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTCGACTCAGGAGACCGTCAGGGTCTTCTGTATGCCTACCTGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagtgGATGGGAAGTCTCGACGACTCTTTACATGCTTTTACAAGGACATTCA-TGCTGTTCCTGCCAGCAATACTgggtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from CESAR tgGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagtgGATGGGAAGTCTCGACGACTCTTTACATGCTTTTACAAGGACATTCA-TGCTGTTCCTGCCAGCAATACTgggtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTTACAAGGACATTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTTACAAGGACATTCA-TGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Pairagon TGGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTTACAAGGACATTCA-TGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Exonerate_protein2genome AAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgCAGTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTTACAAGGACATTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Exonerate_coding2genome AAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgCAGTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTTACAAGGACATTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from GeneWise CACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tatatggagCTGGGTGTCCTGT---------------GTTCCCTCTGCAGTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTTACAAGGACATTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGC-ACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTCACCTTTCTGGATTCTGCGTGGAGAGATCTATTCA-CCGGTCGGAGCCTCTAGTGTCAggtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGC-ACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTCACCTTTCTGGATTCTGCGTGGAGAGATCTATTCA-CCGGTCGGAGCCTCTAGTGTCAggtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGC-ACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTcACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAC-CGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAG-CACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTCACCTTTCTGGATTCTGCGTGGAGAGATCTATTCA-CCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAG-CACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTCACCTTTCTGGATTCTGCGTGGAGAGATCTATTCA-CCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGC-ACCTTTCTTGATTCTGCCTGGAGAGACCTATTC--AGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTCACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAC---CGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGC-ACCTTTCTTGATTCTGCCTGGAGAGACCTATTC--AGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTCACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAC---CGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTCACCTTTCTGGATTCTGCGTGGAGAGATCTATTCACCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTACGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGG-CTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCaagtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from CESAR GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTACGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAG-GCTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCaagtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAcGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGC-TTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTACGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGG-CTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Pairagon GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTACGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGG-CTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAG--GACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTACGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGC---TTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTA-GAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAG--GACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTACGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGC---TTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from GeneWise ---------------------GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagTCTATCTGTCTGTCCCTCAGGTGGGTTTTGGGTTACGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGC-TTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtcttcctcccttttccttctatttcactcctgctgtccctttttcaggACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATC-AATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from CESAR gACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtcttcctcccttttccttctatttcactcctgctgtccctttttcaggACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCC-AATCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCC-AATCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Pairagon GACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCC-AATCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGTGAGTTTTGAACATAtctcattaccttctcagacattgcaacacaggac Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGTGAGTTTTGAACATAtctcattaccttctcagacattgcaacacaggac Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtgagttttgaacatatctcattaccttctcagacattgcaacacaggac #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACAT-GAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATCGAGGGAGACCCAGCCTGGCGGAGTGCCA-TCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACAT-GAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATCGAGGGAGACCCAGCCTGGCGGAGTGCCA-TCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATCGAGGGAGACCCAGCCTGGCGGAGTGCCATCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACAT-GAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATCGAGGGAGACCCAGCCTGGCGGAGTGCCAT-CTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACAT-GAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATCGAGGGAGACCCAGCCTGGCGGAGTGCCAT-CTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATCGAGGGAGACCCAGCCTGGCGGAGTGCCATCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATCGAGGGAGACCCAGCCTGGCGGAGTGCCATCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATCGAGGGAGACCCAGCCTGGCGGAGTGCCATCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTT-GGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTCGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAG-ATCACACAGCATGTCTGCCaggtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTT-GGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTCGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACA-GATCACACAGCATGTCTGCCaggtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGC-TTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCtTTCGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGA-TCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTT-GGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTCGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAG-ATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTT-GGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTCGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAG-ATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTCGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTCGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTCGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTG-GGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gaaggtgctgtctctacatgacatccacggtgaccctgtgtgttctctaggaGCTGATGACAACAACCTCAACTTGCTCTTCTATCAGCATCTGACACGCTCACTGCAACACATGCTTTGTGGGGATCTGGTGCTGCGGCCGCTGGGGCAATTATGGTCCAGGAGACTGCT-TGTCCTGGCCCCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCGTGGCCTCAAGTTCCGGggtaagtcagcctgagatgggacactagtagggggcagagcatacatgcat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTG-GGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gaaggtgctgtctctacatgacatccacggtgaccctgtgtgttctctaggaGCTGATGACAACAACCTCAACTTGCTCTTCTATCAGCATCTGACACGCTCACTGCAACACATGCTTTGTGGGGATCTGGTGCTGCGGCCGCTGGGGCAATTATGGTCCAGGAGACT-GCTTGTCCTGGCCCCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCGTGGCCTCAAGTTCCGGggtaagtcagcctgagatgggacactagtagggggcagagcatacatgcat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggtgctgtctctacatgacatccacggtgaccctgtgtgttctctagGAGCTGATGACAACAACCTCAACTTGCTCTTCTATCAGCATCTGACACGCTCACTGCAACACATGCTTTGTGGGGATCTGGTGCTGCGGCCGCTGGGGCAATTATGGTCCAGGAGACTGCTTGTCCTGGCCCCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCGTGGCCTCAAGTTCCGGGgtaagtcagcctgagatgggacactagtagggggcagagcatacatgcat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTG-GGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggtgctgtctctacatgacatccacggtgaccctgtgtgttctctagGAGCTGATGACAACAACCTCAACTTGCTCTTCTATCAGCATCTGACACGCTCACTGCAACACATGCTTTGTGGGGATCTGGTGCTGCGGCCGCTGGGGCAATTATGGTCCAGGAGACTGC-TTGTCCTGGCCCCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCGTGGCCTCAAGTTCCGGGgtaagtcagcctgagatgggacactagtagggggcagagcatacatgcat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTG-GGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggtgctgtctctacatgacatccacggtgaccctgtgtgttctctagGAGCTGATGACAACAACCTCAACTTGCTCTTCTATCAGCATCTGACACGCTCACTGCAACACATGCTTTGTGGGGATCTGGTGCTGCGGCCGCTGGGGCAATTATGGTCCAGGAGACTGC-TTGTCCTGGCCCCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCGTGGCCTCAAGTTCCGGGgtaagtcagcctgagatgggacactagtagggggcagagcatacatgcat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTG-GGCCGCTGGGGCAATTATGGCCCTGGAGACTGC--TTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggtgctgtctctacatgacatccacggtgaccctgtgtgttctctagGAGCTGATGACAACAACCTCAACTTGCTCTTCTATCAGCATCTGACACGCTCACTGCAACACATGCTTTGTGGGGATCTGGTGCTGCGGCCGCTGGGGCAATTATGGTCCAGGAGACTGCTT---GTCCTGGCCCCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCGTGGCCTCAAGTTCCGGGgtaagtcagcctgagatgggacactagtagggggcagagcatacatgcat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTG-GGCCGCTGGGGCAATTATGGCCCTGGAGACTGC--TTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggtgctgtctctacatgacatccacggtgaccctgtgtgttctctagGAGCTGATGACAACAACCTCAACTTGCTCTTCTATCAGCATCTGACACGCTCACTGCAACACATGCTTTGTGGGGATCTGGTGCTGCGGCCGCTGGGGCAATTATGGTCCAGGAGACTGCTT---GTCCTGGCCCCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCGTGGCCTCAAGTTCCGGGgtaagtcagcctgagatgggacactagtagggggcagagcatacatgcat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTG-CTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggtgctgtctctacatgacatccacggtgaccctgtgtgttctctagGAGCTGATGACAACAACCTCAACTTGCTCTTCTATCAGCATCTGACACGCTCACTGCAACACATGCTTTGTGGGGATCTGGTGCTGCGGCCGCTGGGGCAATTATGGTCCAGGAGACTGCTT-GTCCTGGCCCCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCGTGGCCTCAAGTTCCGGGgtaagtcagcctgagatgggacactagtagggggcagagcatacatgcat #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTG-CTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGC-CCTCAAGTTCTGGGAGAGGGACTACaagtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTG-CTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGC-CCTCAAGTTCTGGGAGAGGGACTACaagtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCT-GGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTTGGGCAGTGCAGTATTCATTATGTCCTACACAAGG-CCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGC-TGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTTGGGCAGTGCAGTATTCATTATGTCCTACACAAGG-CCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTACTTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATC-GCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCT-CATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATC-GCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTG-TCTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATC-GCCGTGCTCACCTTTGCCGTCAGTGCCA ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCcGCTGTGCTCATCTTTGCTGTCAGTGCCAgcactgtctcattgccttgaaggtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGAT-CGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTC-TCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGAT-CGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTC-TCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCT-GTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTCGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGT-GCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCT-GTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTCGTCTACTTCTGTATCTGCTGTCTGCTCATCT-GGTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTCGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCT-GTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTCGTCTACTTCTGTATCTGCTGTCTGCTCATCTGG-TGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCT-GTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTCGTCTACTTCTGTATCTGCTGTCTGCTCATCTGG-TGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCT-GTCTACTTCTGTATCTGCTGTCTACTCATCTGG--CTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTCGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTG---CTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCT-GTCTACTTCTGTATCTGCTGTCTACTCATCTGG--CTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTCGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTG---CTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCT-GTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTCGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTG-CTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGT-CAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagcaCCTGAGGAGACAGGTCCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTA-CTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from CESAR caCCTGAGGAAACAGGT-CAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagcaCCTGAGGAGACAGGTCCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCT-ACTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGT-CAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTcCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTACTGG-AGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGT-CAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTA-CTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Pairagon CACCTGAGGAAACAGGT-CAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTA-CTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTACTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCA---GCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGT--CCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTAC-TGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTACTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTG-ATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCCATGGTGGCTGGGGTGTATTGCCTAGTGG-GGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from CESAR GTCCTGCCCCCCAGCCTG-ATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCCATGGTGGCTGGGGTGTATTGCCTAGTG-GGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTG-ATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCcATGGTGGCTGGGGTGTATTGCCTAGTGGG-GCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTG-ATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCCATGGTGGCTGGGGTGTATTGCCTAGTGG-GGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Pairagon GTCCTGCCCCCCAGCCTG-ATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCCATGGTGGCTGGGGTGTATTGCCTAGTGG-GGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCCATGGTGGCTGGGGTGTATTGCCTAGTGGGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCCATGGTGGCTGGGGTGTATTGCCTAGTGGGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCCATGGTGGCTGGGGTGTATTGCCTAGTGGGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTT-CGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttaggtGAAATTGCAATCCGAGTGTTTCCGTGCATGCACAGAACTGGGTATCCGCACAG-GGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTT-CGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttaggtGAAATTGCAATCCGAGTGTTTCCGTGCATGCACAGAACTGGGTATCCGCACA-GGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCCGTGCATGCACAGAACTGGGTATCCGCACAGGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTT-CGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCCGTGCATGCACAGAACTGGGTATCCGCACAG-GGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTT-CGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCCGTGCATGCACAGAACTGGGTATCCGCACAG-GGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCCGTGCATGCACAGAACTGGGTATCCGCACAGGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCG-TGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCCGTGCATGCACAGAACTGGGTATCCGCACAGG-GCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCCGTGCATGCACAGAACTGGGTATCCGCACAGGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTC-CGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTC-CAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTC-CGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCCGGTTCATTGGTCCAAGCCCAGAGGTTGTT-CCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGT-CCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTC-CAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGT-CCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTC-CAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACC-CGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTG-GAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAggtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from CESAR GAGTTGGAAGAGAATTACACC-CGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTG-GAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAggtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGG-GCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCCGAGCCTACTCCGAGGCCTTGGCAG-CTTTTGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Pairagon GAGTTGGAAGAGAATTACA-CCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCCGAGCCTACTCCGAGGCCTTGGCAGCTTTT-GGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctgggagcagccgtcacttcttcctatggggtcatccaggaCATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTG-TGTTCCTGCAGTCCCTATAggtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctgggagcagccgtcacttcttcctatggggtcatccaggaCATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTG-TGTTCCTGCAGTCCCTATAggtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCT actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCAcGTCAATGTGACCCCCAGTCCTGTAGATCCTgtgttcctgcagtccctataggtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTG-TGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCAATCCC-TGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTG-TGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTG-AGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgagatggctttttttgtaagacaggcactgggcttttttgcattcacaggaCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCCAGGGGGGCCAATGCTGTGGGCTATACCAACTATG-TGACAATGTTGTCTTCaagtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTG-AGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgagatggctttttttgtaagacaggcactgggcttttttgcattcacaggaCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCCAGGGGGGCCAATGCTGTGGGCTATACCAACTAT-GTGACAATGTTGTCTTCaagtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGG-GCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCCAGGGGgGCCAATGCTGTGGGCTATACCAACTATGT-GACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTG-AGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCCAGGGGGGCCAATGCTGTGGGCTATACCAACTA-TGTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACT-GAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCCAGGGGGGCCAATGCTGTGGGCTATACCAACTA-TGTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGAC-CCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCTGGTCGCACCAACTACTCACTGGAGTACT-CATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttttaaacac Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGAC-CCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCTGGTCGCACCAACTACTCACTGGAGTAC-TCATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcacatacatcc Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCTGGTCGCACCAACTACTCACTGGAGTACTCATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttttaaacac Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCC-TAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCTGGTCGCACCAACTACTCACTGGAGTACT-CATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttttaaacac Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGA-CCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCTGGTCGCACCAACTACTCACTGGAGTACT-CATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttttaaacac Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCTGGTCGCACCAACTACTCACTGGAGTACTCATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttttaaacac Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCTGGTCGCACCAACTACTCACTGGAGTACTCATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttttaaacac Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCTGGTCGCACCAACTACTCACTGGAGTACTCATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttttaaacac #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC-GTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg cacagtgtgtcactcttgatcataattcacatacatcccttcgggggcagGACATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACGATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCAGACCTTCCTCTGCACATCCATACCCATGATACTTCAGGGGCAGGTGTGGCAGCCACACTGGCCTGTGCACAAGCAGGGGCTGATGTTGTAGAACGTGGTTGCAGTAGACGCCATGTCAGGGATGA-CTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTCTGACACAggtaagacagaagaatgactcaacagctgaatgacttgaggcaaaactgca Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC-GTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg cacagtgtgtcactcttgatcataattcacatacatcccttcgggggcagGACATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACGATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCAGACCTTCCTCTGCACATCCATACCCATGATACTTCAGGGGCAGGTGTGGCAGCCACACTGGCCTGTGCACAAGCAGGGGCTGATGTTGTAGAACGTGGTTGCAGTAGACGCCATGTCAGGGATGA-CTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTCTGACACAggtaagacagaagaatgactcaacagctgaatgacttgaggcaaaactgca Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGGCAGTAGACTCCATGTCT---GGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagtgtgtcactcttgatcataattcacatacatcccttcgggggcagGACATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACGATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCAGACCTTCCTCTGCACATCCATACCCATGATACTTCAGGGGCAGGTGTGGCAGCCACACTGGCCTGTGCACAAGCAGGGGCTGATGTTGTAGAACGTGGTTGCAGTAGACGCCATGTCAGGGATGACTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTCTGACACAGgtaagacagaagaatgactcaacagctgaatgacttgaggcaaaactgca Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGA-CGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagtgtgtcactcttgatcataattcacatacatcccttcgggggcagGACATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACGATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCAGACCTTCCTCTGCACATCCATACCCATGATACTTCAGGGGCAGGTGTGGCAGCCACACTGGCCTGTGCACAAGCAGGGGCTGATGTTGTAGAACGTGGTTGCAGTAGACGCCATGTCAGGGATGA-CTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTCTGACACAGgtaagacagaagaatgactcaacagctgaatgacttgaggcaaaactgca Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGA----CGTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagtgtgtcactcttgatcataattcacatacatcccttcgggggcagGACATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACGATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCAGACCTTCCTCTGCACATCCATACCCATGATACTTCAGGGGCAGGTGTGGCAGCCACACTGGCCTGTGCACAAGCAGGGGCTGATGTTGTAGAACGTGGTTGCAGTAGACGCCATGTCAGGGATGA-CTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTCTGACACAGgtaagacagaagaatgactcaacagctgaatgacttgaggcaaaactgca Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGGCAGTAGACTCCATGTCTGGGATG---ACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagtgtgtcactcttgatcataattcacatacatcccttcgggggcagGACATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACGATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCAGACCTTCCTCTGCACATCCATACCCATGATACTTCAGGGGCAGGTGTGGCAGCCACACTGGCCTGTGCACAAGCAGGGGCTGATGTTGTAGAACGTGGTTGCAGTAGACGCCATGTCAGGGATGACTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTCTGACACAGgtaagacagaagaatgactcaacagctgaatgacttgaggcaaaactgca Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGGCAGTAGACTCCATGTCTGGGATG---ACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagtgtgtcactcttgatcataattcacatacatcccttcgggggcagGACATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACGATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCAGACCTTCCTCTGCACATCCATACCCATGATACTTCAGGGGCAGGTGTGGCAGCCACACTGGCCTGTGCACAAGCAGGGGCTGATGTTGTAGAACGTGGTTGCAGTAGACGCCATGTCAGGGATGACTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTCTGACACAGgtaagacagaagaatgactcaacagctgaatgacttgaggcaaaactgca Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGGCAGTAGACTCCATGTCTGGGATGACC---TCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagtgtgtcactcttgatcataattcacatacatcccttcgggggcagGACATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACGATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCAGACCTTCCTCTGCACATCCATACCCATGATACTTCAGGGGCAGGTGTGGCAGCCACACTGGCCTGTGCACAAGCAGGGGCTGATGTTGTAGAACGTGGTTGCAGTAGACGCCATGTCAGGGATGACTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTCTGACACAGgtaagacagaagaatgactcaacagctgaatgacttgaggcaaaactgca #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTCGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCC-GGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttaacacaattcttttat Alignment from CESAR GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTCGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCC-GGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttatttctccatcccctg Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTcGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttaacacaattcttttat Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTCGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCC-GGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttaacacaattcttttat Alignment from Pairagon GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTCGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCC-GGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttaacacaattcttttat Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG--GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTCGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGG---TCAAGCCGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttaacacaattcttttat Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATT-GTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG--GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTCGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGG---TCAAGCCGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttaacacaattcttttat Alignment from GeneWise ACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcaggtgaaatcatcctccaagA------------TTCGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGCA-GAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttaacacaattcttttat #### Pcx_ID569_18 --> 0 - 0 Original Alignment GTGCTAAAGGACCTGCCA-AGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCACAGAATAGAAGGGCGGCCTGGAGCCTCCTTAC-TCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from CESAR GTGCTAAAGGACCTGCCA-AGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCACAGAATAGAAGGGCGGCCTGGAGCCT-CCTTACTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Spaln_aa2Genome GTGCTAAAGGACCTGCCA-AGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCAcAGAATAGAAGGGCGGCCTGGAGCCTCCTTACT-CCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Spaln_nt2Genome GTGCTAAAGGACCTGCCA-AGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCACAGAATAGAAGGGCGGCCTGGAGCCT-CCTTACTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Pairagon GTGCTAAAGGACCTGCCA-AGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCACAGAATAGAAGGGCGGCCTGGAGCCT-CCTTACTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Exonerate_protein2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCACAGAATAGAAGGGCGGCCTGGAGCCTCCTTACTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Exonerate_coding2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCACAGAATAGAAGGGCGGCCTGGAGCCTCCTTACTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from GeneWise --------------------------------------------------GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG AGGTGCATCATGGTGGGACCGGGGCTTATTTCTCCATCCCCTGGACTCAGGTGCTAAAGGACCTGCCACAGAATAGAAGGGCGGCCTGGAGCCTCCTTACTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACCAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATG-GGTGGGGGAGCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACCAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGAT-GGGTGGGGGAGCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACcAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGG-GTGGGGGAGCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAAG------TGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACCAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGG-GTGGGGGAGCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGA-CAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACCAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATG-GGTGGGGGAGCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGAT--GAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACCAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGG---GTGGGGGAGCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGAT--GAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACCAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGG---GTGGGGGAGCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGT------GGTGTGGAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACCAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGGGTGGGGGAGCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCT-TCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from CESAR GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCT-TCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Spaln_aa2Genome -GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTT-CTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTT-CTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Pairagon GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTT-CTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAG-CAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAAcgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGGGCC-----AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAAcgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGGGCC-----AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCcTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAgcAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGC-CTTTGTTTTGGGGAGGAGTCAGGCTG-----GGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTG-CCTTTGTTTTGGGGAGGAGTCAGGCTGGGGC-----CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGGGCC-----AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGGGCC-----AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAA-AACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAACAACACACTGAGCGCCTACCCCAAACGCACGGATG-CTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAA-AACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAACAACACACTGAGCGCCTACCCCAAACGCACGGAT-GCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAACAACACACTGAGCGCCTACCCCAAACGCACGGATGCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAA-AACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAACAACACACTGAGCGCCTACCCCAAACGCACGGATG-CTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAA-AACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAACAACACACTGAGCGCCTACCCCAAACGCACGGATG-CTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAACAACACACTGAGCGCCTACCCCAAACGCACGGATGCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAACAACACACTGAGCGCCTACCCCAAACGCACGGATGCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAACAACACACTGAGCGCCTACCCCAAACGCACGGATGCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTCGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACA-TGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTCGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTAC-ATGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTcGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAT-GTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTCGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACA-TGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTT-GTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTCGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACA-TGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGC-TTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTAC--AGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTCGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAT---GTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGC-TTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTAC--AGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTCGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAT---GTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTCGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACATGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATA-CTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from CESAR GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCAT-ACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGcTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAC-TGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCA-TACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Pairagon GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCAT-ACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCAC--AACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAC---TGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCAC--AACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAC---TGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCT-GAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg gacagggccccaccctgaactcccaagccctctgtctgattattttccaggtGGTGTATCTCCGCAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAA-CAGCTCTGAGGAAGAATTCTTTGATGCCCATggtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCT-GAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg gacagggccccaccctgaactcccaagccctctgtctgattattttccaggtGGTGTATCTCCGCAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCC-AAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATggtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCT-GAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTC-CAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCT-GAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCC-AAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from GeneWise -------------------------------------------------GGCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG GACAGGGCCCCACCCTGAACTCCCAAGCCCTCTGTCTGATTATTTTCCAGGTGGTGTATCTCCGCAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTC-CTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCCTCATACTGCACAGTGGCAGCATCCTGGACCCTG-CCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCaagtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTC-CTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCCTCATACTGCACAGTGGCAGCATCCTGGACCCTG-CCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCaagtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTC-CTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCCTCATACTGCACAGTGGCAGCATCCTGGACCCT-GCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTT-CCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCCTCATACTGCACAGTGGCAGCATCCTGGACCCT-GCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCC-TCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagtCTGAGTCCTTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCCTCTCAATACCAGGGTGCAGTGGCCACTGTCA-TGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCC-TCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagtCTGAGTCCTTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCCTCTCAATACCAGGGTGCAGTGGCCACTGTCA-TGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATC-CTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCCTCTCAATACCAGGGTGCAGTGGCCACTGTCAT-GCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCAT-CCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCCTCTCAATACCAGGGTGCAGTGGCCACTGTCAT-GCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTGCTGG-TCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATaggtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTGC-TGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATaggtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGG-GACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTGCT-GGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTGCT-GGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Exonerate_coding2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACCGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa #### Pitpnm1_ID318_15 --> 2 - 1 Original Alignment ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGC-AATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagctGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCA-CAGTGAGGTTGTCAACagtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from CESAR ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGC-AATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagctGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCA-CAGTGAGGTTGTCAACagtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Spaln_aa2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGC-AATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAG---A gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCcAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACAGTGAGGTTGTCAACAGTGGgtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Spaln_nt2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGGAAGGGCAGTGAACTAGGC-AATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCA-CAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Pairagon CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGGAAGGGCAGTGAACTAGG-CAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCA-CAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Exonerate_protein2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGC-AATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACC gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACAgtgaggttgtcaacagtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Exonerate_coding2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGC-AATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACC gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACAgtgaggttgtcaacagtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from GeneWise CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTA-GGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGATC- gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACAGTGAGGTTGTCAACAGTGGgtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTAC-TGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACCTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCA-ACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTAC-TGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACCTGCCCAGAGGCACTCACAGCCTTCCCCACAGTC-AACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACCTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTA-CTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACCTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCA-ACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTA-CTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACCTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCA-ACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACCTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACCTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTG-CTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACAC-CACTGGAGAAGAGgtttcttcctctgctgtgtttgcagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTG-CTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACA-CCACTGGAGAAGAGgtccttagaattttctgttttacagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTG-CTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG------------------------GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGcCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCACTGGAGAAGAGGTTTCTTCCTCTGCTGTGTTTGCAGGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGC-TGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-------------------------GAAGGTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACAC-CACTGGAGAAGAGGTTTCTTCCTCTGCTGTGTTTGCAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTG-CTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-------------------------GAAGGTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACAC-CACTGGAGAAGAGGTTTCTTCCTCTGCTGTGTTTGCAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTG-CTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACAccactggagaagaggtttcttcctctgctgtgtttgcaggttgatgtctatgtcatgacacagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTG-CTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACAccactggagaagaggtttcttcctctgctgtgtttgcaggttgatgtctatgtcatgacacagc Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAG-GTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG------------------------CTCACTGGAGAGAAGGTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCACTGGAGAAGAGGTTTCTTCCTCTGCTGTGTTTGCAGGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCA-GTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTGGTCACACTCACTGGAGAAGAGgtactcagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCACGTGTCGTCAGAACATGCACTGGGCATTGGTGTCT-CCCTGTGCACATGGTGGTCaggtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCA-GTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTGGTCACACTCACTGGAGAAGAGgtccttagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCACGTGTCGTCAGAACATGCACTGGGCATTGGTGTC-TCCCTGTGCACATGGTGGTCaggtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTACTCAGAATTTTCTGTTTTACAgGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCACGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTCCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA-----------GAA--------------GGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCA-GTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTACTCAGAATTTTCTGTTTTACAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCACGTGTCGTCAGAACATGCACTGGGCATTGGTGTCT-CCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCA-GTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTACTCAGAATTTTCTGTTTTACAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCACGTGTCGTCAGAACATGCACTGGGCATTGGTGTCT-CCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAgaagaggtactcagaattttctgttttacagGTTGATGTC------TATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCACGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTCCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Exonerate_coding2genome TGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCA---GTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAgaagaggtactcagaattttctgttttacagGTTGATGTC------TATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCACGTGTC--GTCAGAACATGCACTGGGCATTGGTGTCTC-CCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGgtactcagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCACGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTCCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATC-GATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactaccaacctcattctgtccacctattatcgtttctgttccttttaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTGTGTCCCGAGGCACAGAAGCCGTGGTCTTCAGCATTCGATGGTTCTTTCACTGCCAGTGTCTCGATCA-GGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATC-GATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactaccaacctcattctgtccacctattatcgtttctgttccttttaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTGTGTCCCGAGGCACAGAAGCCGTGGTCTTCAGCATTCGATGGTTCTTTCACTGCCAGTGTCTCGATC-AGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTGTGTCCCGAGGCACAGAAGCCGTGGTCTTCAGCATTCGATGGTTCTTTCACTGCCAGTGTCTCGATCAGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCA-TCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTGTGTCCCGAGGCACAGAAGCCGTGGTCTTCAGCATTCGATGGTTCTTTCACTGCCAGTGTCTCGATCA-GGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCA-TCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTGTGTCCCGAGGCACAGAAGCCGTGGTCTTCAGCATTCGATGGTTCTTTCACTGCCAGTGTCTCGATCA-GGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Exonerate_protein2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTGTGTCCCGAGGCACAGAAGCCGTGGTCTTCAGCATTCGATGGTTCTTTCACTGCCAGTGTCTCGATCAGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Exonerate_coding2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTGTGTCCCGAGGCACAGAAGCCGTGGTCTTCAGCATTCGATGGTTCTTTCACTGCCAGTGTCTCGATCAGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTGTGTCCCGAGGCACAGAAGCCGTGGTCTTCAGCATTCGATGGTTCTTTCACTGCCAGTGTCTCGATCAGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgcgtggactggagtaattgtttcaattatttttaggCACTGGCAGGACTCTGACTACTTGATTGTGTATGTACACTGGCCGGCCAGATATGCAAAAACACCGTGTAG-GGCCTGGCTATCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtgagttggcttgggatgggcctatcctgcttgggcctatcctgtttgac Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgcgtggactggagtaattgtttcaattatttttaggCACTGGCAGGACTCTGACTACTTGATTGTGTATGTACACTGGCCGGCCAGATATGCAAAAACACCGTGTA-GGGCCTGGCTATCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtgagttggcttgggatgggcctatcctgcttgggcctatcctgtttgac Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgcgtggactggagtaattgtttcaattatttttagGCACTGGCAGGACTCTGACTACTTGATTGTGTATGTACACTGGCCGGCCAGATATGCAAAAACACCGTGTAGGGCCTGGCTATCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtgagttggcttgggatgggcctatcctgcttgggcctatcctgtttgac Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgcgtggactggagtaattgtttcaattatttttagGCACTGGCAGGACTCTGACTACTTGATTGTGTATGTACACTGGCCGGCCAGATATGCAAAAACACCGTGTAG-GGCCTGGCTATCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtgagttggcttgggatgggcctatcctgcttgggcctatcctgtttgac Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgcgtggactggagtaattgtttcaattatttttagGCACTGGCAGGACTCTGACTACTTGATTGTGTATGTACACTGGCCGGCCAGATATGCAAAAACACCGTGTAG-GGCCTGGCTATCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtgagttggcttgggatgggcctatcctgcttgggcctatcctgtttgac Alignment from Exonerate_protein2genome agcaacttgtcatctgcgtggactggagtaattgtttcaattatttttaggcactggcaggactctgactacttgattgtgtatgtacactggccggccagatatgcaaaaacaccgtgtagggcctggctatcacaacacaccttcccccatggtgttgactctttctgtgatggcctcatgcatgacccattgcgccagaaagccatgtttctgcagagcctggtccaagaggtgagttggcttgggatgggcctatcctgcttgggcctatcctgtttgac Alignment from Exonerate_coding2genome agcaacttgtcatctgcgtggactggagtaattgtttcaattatttttaggcactggcaggactctgactacttgattgtgtatgtacactggccggccagatatgcaaaaacaccgtgtagggcctggctatcacaacacaccttcccccatggtgttgactctttctgtgatggcctcatgcatgacccattgcgccagaaagccatgtttctgcagagcctggtccaagaggtgagttggcttgggatgggcctatcctgcttgggcctatcctgtttgac Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgcgtggactggagtaattgtttcaattatttttagGCACTGGCAGGACTCTGACTACTTGATTGTGTATGTACACTGGCCGGCCAGATATGCAAAAACACCGTGTAGGGCCTGGCTATCACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtgagttggcttgggatgggcctatcctgcttgggcctatcctgtttgac #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGG-TCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTGGCAGTCTACGCAGCATTGGGAC-CTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGG-TCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTGGCAGTCTACGCAGCATTGGGA-CCTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATAT-GGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATgGGCTCCCCAAAAGATGTGGCAGTCTACGCAGCATTGGGACC-TCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTGGCAGTCTACGCAGCATTGGGAC-CTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGG-TCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTGGCAGTCTACGCAGCATTGGGAC-CTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Exonerate_protein2genome tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacaggtagatctgaacatcatagctggatatgggctccccaaaagatgtggcagtctacgcagcattgggacctctccaagccagacctatattattggccgtggcatccgcacattgcaggcacagtgtcaggtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Exonerate_coding2genome tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacaggtagatctgaacatcatagctggatatgggctccccaaaagatgtggcagtctacgcagcattgggacctctccaagccagacctatattattggccgtggcatccgcacattgcaggcacagtgtcaggtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTGGCAGTCTACGCAGCATTGGGACCTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca #### Pkd2l1_ID8954_14 --> 1 - 0 Original Alignment gCTCACAAGGAGAGTTCTGCAGCTG-CAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG catccagacatcaattttggtttcctcggttttatttgcaaatcttacaggCTTACAAGGAGAGTATTGCAGCTGCCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTG-CGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCAGGCATGgtaagtgccctccagtttggcacacagagtcagctactactggagtccat Alignment from CESAR gCTCACAAGGAGAGTTCTGCAGCTG-CAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG catccagacatcaattttggtttcctcggttttatttgcaaatcttacaggCTTACAAGGAGAGTATTGCAGCTGCCAATGTATTCTGGAAGGAGTTGTGTCCCAGATT-GCGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCAGGCATGgtaagtgccctccagtttggcacacagagtcagctactactggagtccat Alignment from Spaln_aa2Genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG catccagacatcaattttggtttcctcggttttatttgcaaatcttacagGCTTACAAGGAGAGTATTGCAGCTGCCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTGCGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCAGGCATGgtaagtgccctccagtttggcacacagagtcagctactactggagtccat Alignment from Spaln_nt2Genome GCTCACAAGGAGAGTTCTGCAGCTGC-AGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG catccagacatcaattttggtttcctcggttttatttgcaaatcttacagGCTTACAAGGAGAGTATTGCAGCTGCCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTG-CGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCAGGCATGgtaagtgccctccagtttggcacacagagtcagctactactggagtccat Alignment from Pairagon GCTCACAAGGAGAGTTCTGCAGCTG-CAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG catccagacatcaattttggtttcctcggttttatttgcaaatcttacagGCTTACAAGGAGAGTATTGCAGCTGCCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTG-CGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCAGGCATGgtaagtgccctccagtttggcacacagagtcagctactactggagtccat Alignment from Exonerate_protein2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG catccagacatcaattttggtttcctcggttttatttgcaaatcttacagGCTTACAAGGAGAGTATTGCAGCTGCCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTGCGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCAGGCATGgtaagtgccctccagtttggcacacagagtcagctactactggagtccat Alignment from Exonerate_coding2genome GCTCACAAGGAGAGTTCTGCAGCTG-CAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG catccagacatcaattttggtttcctcggttttatttgcaaatcttacagGCTTACAAGGAGAGTATTGCAGCTGCCAATGTATTCTGGAAGGAGTTGTGTCCCAGATT-GCGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCAGGCATGgtaagtgccctccagtttggcacacagagtcagctactactggagtccat Alignment from GeneWise GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG catccagacatcaattttggtttcctcggttttatttgcaaatcttacagGCTTACAAGGAGAGTATTGCAGCTGCCAATGTATTCTGGAAGGAGTTGTGTCCCAGATTGCGCTGTAGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCAGGCATGgtaagtgccctccagtttggcacacagagtcagctactactggagtccat #### Pkd2l1_ID8958_10 --> 0 - 0 Original Alignment AACATGTTCCTGGCCATCATCAACGACACATACTCC-GAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGG-TCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from CESAR AACATGTTCCTGGCCATCATCAACGACACATACTCC-GAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAG-GTCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Spaln_aa2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGTCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Spaln_nt2Genome AACATGTTCCTGGCCATCATCAACGACACATACT-CCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGG-TCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Pairagon AACATGTTCCTGGCCATCATCAACGACACATACT-CCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGG-TCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Exonerate_protein2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGTCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Exonerate_coding2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGTCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from GeneWise AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGTCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAAC-AGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG aagtgcctgtgggcaggcttctgacagaattattgtgctgtgttttctagtTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACCAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCG-CTTCTTCGTGCTCCTGgtaagcgtccctcagtaggctggtgatttgggagacctttaaagtgcagt Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAAC-AGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG aagtgcctgtgggcaggcttctgacagaattattgtgctgtgttttctagtTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACCAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC-GCTTCTTCGTGCTCCTGgtaagcgtccctcagtaggctggtgatttgggagacctttaaagtgcagt Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAAC-AGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG aagtgcctgtgggcaggcttctgacagaattattgtgctgtgttttctagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACcAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGC-TTCTTCGTGCTCCTGgtaagcgtccctcagtaggctggtgatttgggagacctttaaagtgcagt Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAA-CAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG aagtgcctgtgggcaggcttctgacagaattattgtgctgtgttttctagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACCAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCG-CTTCTTCGTGCTCCTGgtaagcgtccctcagtaggctggtgatttgggagacctttaaagtgcagt Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAA-CAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG aagtgcctgtgggcaggcttctgacagaattattgtgctgtgttttctagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACCAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCG-CTTCTTCGTGCTCCTGgtaagcgtccctcagtaggctggtgatttgggagacctttaaagtgcagt Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAAC-AGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC--GTCTTCTTCGTGCTCCTG aagtgcctgtgggcaggcttctgacagaattattgtgctgtgttttctagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACCAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGC---TTCTTCGTGCTCCTGgtaagcgtccctcagtaggctggtgatttgggagacctttaaagtgcagt Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAG---AATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG aagtgcctgtgggcaggcttctgacagaattattgtgctgtgttttctagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAAC--CAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGC-TTCTTCGTGCTCCTGgtaagcgtccctcagtaggctggtgatttgggagacctttaaagtgcagt Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG aagtgcctgtgggcaggcttctgacagaattattgtgctgtgttttctagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACCAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGCTTCTTCGTGCTCCTGgtaagcgtccctcagtaggctggtgatttgggagacctttaaagtgcagt #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCC-AAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tcttcctggagcagtctatcccttgactgtccagaccatttcctttacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCCAAGGACATCCTGGGCTTTGCCATCATGTTCT-CATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtaggaatacctgtatcattgtagatcactcatttttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCC-AAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tcttcctggagcagtctatcccttgactgtccagaccatttcctttacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCCAAGGACATCCTGGGCTTTGCCATCATGT-TCTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtaggaatacctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagcagtctatcccttgactgtccagaccatttcctttacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCCAAGGACATCCTGGGCTTTGCCATCATGTTCTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggaatacctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTG-CCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagcagtctatcccttgactgtccagaccatttcctttacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCCAAGGACATCCTGGGCTTTGCCATCATGTTC-TCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggaatacctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTG-CCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagcagtctatcccttgactgtccagaccatttcctttacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCCAAGGACATCCTGGGCTTTGCCATCATGTTC-TCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggaatacctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagcagtctatcccttgactgtccagaccatttcctttacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCCAAGGACATCCTGGGCTTTGCCATCATGTTCTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggaatacctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagcagtctatcccttgactgtccagaccatttcctttacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCCAAGGACATCCTGGGCTTTGCCATCATGTTCTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggaatacctgtatcattgtagatcactcatttttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagcagtctatcccttgactgtccagaccatttcctttacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCCAAGGACATCCTGGGCTTTGCCATCATGTTCTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggaatacctgtatcattgtagatcactcatttttcagatcccagcat #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAACGTTGTCCTGGATACACACACAACCCAATTCAAGAGGC-AAGGGAATTGAAAGAAaggtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from CESAR GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAACGTTGTCCTGGATACACACACAACCCAATTCAAGAGG-CAAGGGAATTGAAAGAAaggtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Spaln_aa2Genome GCTC------------AAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAACGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCA-AGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Spaln_nt2Genome GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAACGTTGTCCTGGATACACACACAACCCAATTCAAGAGGC-AAGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Pairagon GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAACGTTGTCCTGGATACACACACAACCCAATTCAAGAGGC-AAGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGG--CTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAACGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCA---AGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Exonerate_coding2genome GCTCATCAGCGGCTCAAGGAGGT---TGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAA--CGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCA-AGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from GeneWise GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACA gctaacacatcagccccatattacctgctgggactgtgttttaattataggctcatcagtgggtcaaggaacgttgtcctggatacacacacaacccaattcaagaggcaagggaattgaaagaaaggtacgtacagATA---GAAGGTCTGCGGGACTCTGGT---GACCATCATC #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTG-GAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGCGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGC-GAAGCTGGAACATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTG-GAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGCGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGC-GAAGCTGGAACATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTG-GAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGcGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCG-AAGCTGGAACATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTG-GAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGCGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCG-AAGCTGGAACATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTG-GAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGCGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGC-GAAGCTGGAACATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGCGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGAAGCTGGAACATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGCGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGAAGCTGGAACATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGCGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGAAGCTGGAACATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAAC-CAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcaggaTACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTTGTGCTTGCCTGCCTTGCTTATAT-CACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAAC-CAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcaggaTACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTTGTGCTTGCCTGCCTTGCTTATA-TCACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTTGTGCTTGCCTGCCTTGCTTATATCACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCA-ACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTTGTGCTTGCCTGCCTTGCTTATAT-CACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAA-CCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTTGTGCTTGCCTGCCTTGCTTATAT-CACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTTGTGCTTGCCTGCCTTGCTTATATCACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTTGTGCTTGCCTGCCTTGCTTATATCACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from GeneWise GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTTGTGCTTGCCTGCCTTGCTTATATCACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAACGGTGGCAAATTTGTCGGGCACCGTACCCTAC-TGTCTCTGCTATCCACTCAggtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAACGGTGGCAAATTTGTCGGGCACCGTACCCTA-CTGTCTCTGCTATCCACTCAggtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAcGGTGGCAAATTTGTCGGGCACCGTACCCTACT-GTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAACGGTGGCAAATTTGTCGGGCACCGTACCCT-ACTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAG-GGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAACGGTGGCAAATTTGTCGGGCACCGTACCCTA-CTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAACGGTGGCAAATTTGTCGGGCACCGTACCCTACTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAACGGTGGCAAATTTGTCGGGCACCGTACCCTACTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCA--------------------------------------------------- ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAACGGTGGCAAATTTGTCGGGCACCGTACCCTACTGTCTCTGCTATCCACTCAGGTAAGGCCGGGGGCTCCGGCACTAAAGCAGCTTCAAAGTCTTGGCAGAGA #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGG-CAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagaccctgcccattaacttccaatcatttgctttctttttgaagGTGATTCCAGGGCCAGTTCCTGTCTCACAAGAAAGTGGGTA-CTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCGAAGgtgagttacctaggggtggctgatacaccaagactacaagtctgatagca Alignment from CESAR GTGATTTCGGGG-CAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagaccctgcccattaacttccaatcatttgctttctttttgaagGTGATTCCAGGGCCAGTTCCTGTCTCACAAGAAAGTGGGT-ACTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCGAAGgtgagttacctaggggtggctgatacaccaagactacaagtctgatagca Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagaccctgcccattaacttccaatcatttgctttctttttgaaggtgattccag---------GGCCAGTTCCTGTCTCACAAGAAAGTGGGTAC-TATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCGAAGgtgagttacctaggggtggctgatacaccaagactacaagtctgatagca Alignment from Spaln_nt2Genome GTGATTTCGGGGC-AGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagaccctgcccattaacttccaatcatttgctttctttttgaagGTGATTCCAGGGCCAGTTCCTGTCTCACAAGAAAGTGGGTA-CTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCGAAGgtgagttacctaggggtggctgatacaccaagactacaagtctgatagca Alignment from Pairagon GTGATTTCGGGG-CAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagaccctgcccattaacttccaatcatttgctttctttttgaagGTGATTCCAGGGCCAGTTCCTGTCTCACAAGAAAGTGGGTA-CTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCGAAGgtgagttacctaggggtggctgatacaccaagactacaagtctgatagca Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagaccctgcccattaacttccaatcatttgctttctttttgaagGTGATTCCAGGGCCAGTTCCTGTCTCACAAGAAAGTGGGTACTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCGAAGgtgagttacctaggggtggctgatacaccaagactacaagtctgatagca Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagaccctgcccattaacttccaatcatttgctttctttttgaagGTGATTCCAGGGCCAGTTCCTGTCTCACAAGAAAGTGGGTACTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCGAAGgtgagttacctaggggtggctgatacaccaagactacaagtctgatagca Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagaccctgcccattaacttccaatcatttgctttctttttgaagGTGATTCCAGGGCCAGTTCCTGTCTCACAAGAAAGTGGGTACTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCGAAGgtgagttacctaggggtggctgatacaccaagactacaagtctgatagca #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAG-CTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttaggTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCA-CTTCCAGACCTTGggtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAG-CTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttaggTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCC-TCACTTCCAGACCTTGggtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAG-CTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACC---TTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACcCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCACTTCCAGACCTTGGGTAGgcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGC-TCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTC-ACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCA-GCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTC-ACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAG-CTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACC---TTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCACTTCCAGACCTTGGGTAGgcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAG-CTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACC---TTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCACTTCCAGACCTTGGGTAGgcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGC-CGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCCGCTCTATCTTTGGGGATGCACTACTCATTG-CCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGC-CGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCCGCTCTATCTTTGGGGATGCACTACTCATT-GCCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGC-CGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCcCGCTCTATCTTTGGGGATGCACTACTCATTGC-CCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCC-GCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCCGCTCTATCTTTGGGGATGCACTACTCATTG-CCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTG-CCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCCGCTCTATCTTTGGGGATGCACTACTCATTG-CCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCCGCTCTATCTTTGGGGATGCACTACTCATTGCCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCCGCTCTATCTTTGGGGATGCACTACTCATTGCCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCCGCTCTATCTTTGGGGATGCACTACTCATTGCCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTG-GAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg cacgtcttggggtgaccaccaggggagtactgcctttctgtgccctgcagaGGCATGAAGGGCAAGCCATACCTT---CTGCGAGCAGCTCATGGACTTTGTCAACCAGAAGCAGAGAG-CCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtaaactgctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg cacgtcttggggtgaccaccaggggagtactgcctttctgtgccctgcagaGGCATGAAGGGCAAGCCATACCTTCTG--CGAGCAGCTCATGGACTTTGTCAACCAGAAGCAGAGA-GCCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtaaactgctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacgtcttggggtgaccaccaggggagtactgcctttctgtgccctgcagAGGCATGAAGGGCAAGCCATACCTTCTGC--GAGCAGCTCATGGACTTTGTCAACCAGAAGCAGAGAGC-CCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaactgctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTG-GAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacgtcttggggtgaccaccaggggagtactgcctttctgtgccctgcagAGGCATGAAGGGCAAGCCATACCT---TCTGCGAGCAGCTCATGGACTTTGTCAACCAGAAGCAGAGAG-CCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaactgctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTG-GAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacgtcttggggtgaccaccaggggagtactgcctttctgtgccctgcagAGGCATGAAGGGCAAGCCATACCT---TCTGCGAGCAGCTCATGGACTTTGTCAACCAGAAGCAGAGAG-CCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaactgctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Exonerate_protein2genome CCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacgtcttggggtgaccaccaggggagtactgcctttctgtgccctgcagaggcatgaagggcaagccataccttctgcgagcagctcatggactttgtcaaccagaagcagagagcCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaactgctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Exonerate_coding2genome CCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacgtcttggggtgaccaccaggggagtactgcctttctgtgccctgcagaggcatgaagggcaagccataccttctgcgagcagctcatggactttgtcaaccagaagcagagagcCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaactgctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacgtcttggggtgaccaccaggggagtactgcctttctgtgccctgcagAGGCATGAAGGGCAAGCCATACCTT---CTGCGAGCAGCTCATGGACTTTGTCAACCAGAAGCAGAGAGCCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaactgctataggcaaaatggcagtgtgggtgggacccacctagccca #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTAGAGACTGCGCTGGAGTCCT-TGGCCTCAACTTAAACCGGgtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTAGAGACTGCGCTGGAGTCC-TTGGCCTCAACTTAAACCGGgtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACcAAGAAGCGGGTAGAGACTGCGCTGGAGTCCTT-GGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACA-AGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTAGAGACTGCGCTGGAGTCCT-TGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGA-CAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTAGAGACTGCGCTGGAGTCCT-TGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Exonerate_protein2genome ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcattctgaagatgttctcggcggaccaagaagcgggtagagactgcgctggagtccttggcctcaacttaaaccgggtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Exonerate_coding2genome ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcattctgaagatgttctcggcggaccaagaagcgggtagagactgcgctggagtccttggcctcaacttaaaccgggtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTAGAGACTGCGCTGGAGTCCTTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAA-CTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACCTAGCCATGAACATATTGGCTCAGAATGCCTCCCAGA-CACCTTCCTGCGGAAAgcgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAA-CTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACCTAGCCATGAACATATTGGCTCAGAATGCCTCCC-AGACACCTTCCTGCGGAAAgcgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAA-CTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGAcCTAGCCATGAACATATTGGCTCAGAATGCCTCCCA-GACACCTTCCTGCGGAAAGCgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAAC-TGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACCTAGCCATGAACATATTGGCTCAGAATGCCTCCCAGA-CACCTTCCTGCGGAAAGCgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAA-CTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACCTAGCCATGAACATATTGGCTCAGAATGCCTCCCAG-ACACCTTCCTGCGGAAAGCgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Exonerate_protein2genome aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcaggtatggtcagaggagttgtttagacctagccatgaacatattggctcagaatgcctcccagacaccttcctgcggaaagcgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Exonerate_coding2genome aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcaggtatggtcagaggagttgtttagacctagccatgaacatattggctcagaatgcctcccagacaccttcctgcggaaagcgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACCTAGCCATGAACATATTGGCTCAGAATGCCTCCCAGACACCTTCCTGCGGAAAGCgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACACGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGA-CTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACACGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCT-TGACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACACGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGT------TTTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACACGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTG-ACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGT------TTTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACACGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTG-ACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Exonerate_protein2genome gctcctccccttcttgttcattctatactggatctgtcatgtatatataggaccctaagattcgagaagtttttgggggccctgatacacggctggaggagagattgatgacacgtggtggctgggccagatttagtaactaccacattcttgacttcatggctgtgcaggatggcacagtcaaggtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Exonerate_coding2genome gctcctccccttcttgttcattctatactggatctgtcatgtatatataggaccctaagattcgagaagtttttgggggccctgatacacggctggaggagagattgatgacacgtggtggctgggccagatttagtaactaccacattcttgacttcatggctgtgcaggatggcacagtcaaggtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACACGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACA-CTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACCTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATG-CCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from CESAR GAGGTGGACACA-CTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACCTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATG-CCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Spaln_aa2Genome GAGGTGGACACA-CTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACAcCTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGC-CGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Spaln_nt2Genome GAGGTGGACACAC-TGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACCTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATG-CCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Pairagon GAGGTGGACACA-CTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACCTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATG-CCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Exonerate_protein2genome GAGGTGGACACA-CTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAA aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACCTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Exonerate_coding2genome GAGGTGGACACA-CTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAA aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACCTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from GeneWise GAGGTGGACACA-CTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACCTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGC-CGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat #### Pnlip_ID12748_7 --> 2 - 1 Original Alignment gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATC-GAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTCGAAATGCCAGGATGCCAGAAAAATATTCTTT-CCAAATTGTTGATATCGACGGGATCTGGGAAggtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from CESAR gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATC-GAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTCGAAATGCCAGGATGCCAGAAAAATATTCTTT-CCAAATTGTTGATATCGACGGGATCTGGGAAggtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Spaln_aa2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTCGAAATGCCAGGATGCCAGAAAAATATTCTTTCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Spaln_nt2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAAT-CGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTCGAAATGCCAGGATGCCAGAAAAATATTCTTTCC-AAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Pairagon GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGG-AATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTCGAAATGCCAGGATGCCAGAAAAATATTCTTT-CCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Exonerate_protein2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTCGAAATGCCAGGATGCCAGAAAAATATTCTTTCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Exonerate_coding2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTCGAAATGCCAGGATGCCAGAAAAATATTCTTTCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from GeneWise GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTCGAAATGCCAGGATGCCAGAAAAATATTCTTTCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTC-ACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa tgcagaaacttttccctcccagataacaactagattgcattgtcttccaggtTGGCGGTACCAGGTAACTGTCCACCCTCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTT-ATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTC-ACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa tgcagaaacttttccctcccagataacaactagattgcattgtcttccaggtTGGCGGTACCAGGTAACTGTCCACCCTCTCTGGACAGAAGGTCACTGGGCATATCCTAGTT-TATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTC-ACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCcACCCTCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTA-TTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTC-ACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCCACCCTCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTT-ATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGT-CACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCCACCCTCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTA-TTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTC-ACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTT--TCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCCACCCTCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTA---TTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGT---CACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACT--GTCCACCCTCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTA-TTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from GeneWise GTTGGCGGTACCAGGTGACT-GTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCCACCCTCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTA-TTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt #### Pnlip_ID12752_11 --> 1 - 2 Original Alignment gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAA-TTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt gtctcttcaaacatatccacaatgctttgattgcatttctcctatcctaggGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCTGAT------GTTGGAGATTTGCAGAAGGTTAAACTTTATCTGGTACAACAATGTGATAAACCCAACTCTGCCAA-AGTGGGAGCATCAAGGATTACAGTGGAAAGAAATGATGGCAGAgtgtgcagtacttgtgtagtatcagtcctaaagctagcaggacttagagact Alignment from CESAR gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAA-TTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt gtctcttcaaacatatccacaatgctttgattgcatttctcctatcctaggGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAACTTTATCTGGTACAACAATGTGATAAACCCAACTCTGC-CAAAGTGGGAGCATCAAGGATTACAGTGGAAAGAAATGATGGCAGAgtgtgcagtacttgtgtagtatcagtcctaaagctagcaggacttagagact Alignment from Spaln_aa2Genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAA-TTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtctcttcaaacatatccacaatgctttgattgcatttctcctatcctagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAAcTTTATCTGGTACAACAATGTGATAAACCCAACTCTGCCAAA-GTGGGAGCATCAAGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgcagtacttgtgtagtatcagtcctaaagctagcaggacttagagact Alignment from Spaln_nt2Genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAA-TTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtctcttcaaacatatccacaatgctttgattgcatttctcctatcctagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAACTTTATCTGGTACAACAATGTGATAAACCCAACTCT-GCCAAAGTGGGAGCATCAAGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgcagtacttgtgtagtatcagtcctaaagctagcaggacttagagact Alignment from Pairagon GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAA-TTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtctcttcaaacatatccacaatgctttgattgcatttctcctatcctagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAACTTTATCTGGTACAACAATGTGATAAACCCAACTCT-GCCAAAGTGGGAGCATCAAGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgcagtacttgtgtagtatcagtcctaaagctagcaggacttagagact Alignment from Exonerate_protein2genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAA-TTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAA--GTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtctcttcaaacatatccacaatgctttgattgcatttctcctatcctagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAACTTTATCTGGTACAACAATGTGATAAACCCAACTCTGCCAAAGTG---GGAGCATCAAGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgcagtacttgtgtagtatcagtcctaaagctagcaggacttagagact Alignment from Exonerate_coding2genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAA-TTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtctcttcaaacatatccacaatgctttgattgcatttctcctatcctagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAACTTTATCTGGTACAACAATGTGATAAACCCAACTCTG-CCAAAGTGGGAGCATCAAGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgcagtacttgtgtagtatcagtcctaaagctagcaggacttagagact Alignment from GeneWise GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtctcttcaaacatatccacaatgctttgattgcatttctcctatcctagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCTGATGTT------GGAGATTTGCAGAAGGTTAAACTTTATCTGGTACAACAATGTGATAAACCCAACTCTGCCAAAGTGGGAGCATCAAGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgcagtacttgtgtagtatcagtcctaaagctagcaggacttagagact #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCA-GAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcaggtATCACTAGACTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAG-GTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from CESAR gtATCACAAGGCTG---CAGCGCTGGAGTCGGGCA-GAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcaggtATCACTAGACTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCA-GGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Spaln_aa2Genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Spaln_nt2Genome GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCA-GAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAG-GTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCA-GAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAG-GTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Exonerate_protein2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Exonerate_coding2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from GeneWise GTATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATC-CTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCCTCCTGCACCCACGATACTTCGGTCCAAACT-GCTCAACACGGTGAAGCAGAAGCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGaagtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from CESAR ATTTCCCTGGAGCACGAGATC-CTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCCTCCTGCACCCACGATACTTCGGTCCAA-ACTGCTCAACACGGTGAAGCAGAAGCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGaagtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCCTCCTGCACCCACGATACTTCGGTCCAAACTGCTCAACACGGTGAAGCAGAAGCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGAT-CCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCCTCCTGCACCCACGATACTTCGGTCC-AAACTGCTCAACACGGTGAAGCAGAAGCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Pairagon ATTTCCCTGGAGCACGAGATC-CTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCCTCCTGCACCCACGATACTTCGGTCCAAAC-TGCTCAACACGGTGAAGCAGAAGCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Exonerate_protein2genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCCTCCTGCACCCACGATACTTCGGTCCAAACTGCTCAACACGGTGAAGCAGAAGCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Exonerate_coding2genome TTCCCTGGAGCACGAGAT-CCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagatTTCCCTGGAGCACGAGATCCCTCCTGCACCCACGATACTTCGGTCCAAA-CTGCTCAACACGGTGAAGCAGAAGCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctag---------ATTTCCCTGGAGCACGAGATCCCTCCTGCACCCACGATACTTCGGTCCAAACTGCTCAACACGGTGAAGCAGAAGCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGC-CTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagtgCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGG-ACTTGAAGCACCGCTCAAGATCTGTggtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGC-CTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagtgCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGG-ACTTGAAGCACCGCTCAAGATCTGTggtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTG-CCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGA-CTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTG-CCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGA-CTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGC-CTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTG--GAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGA---CTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCT---CAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGT--CCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGA-CTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAG-AGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt cacctggtttacttaatatacttccttatcccctttctttctttcctcaggcGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGCAGCAACTACCTCTTCCTGGGGGATTATTTAGACC-GGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGACGCAtgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAG-AGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt cacctggtttacttaatatacttccttatcccctttctttctttcctcaggcGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGCAGCAACTACCTCTTCCTGGGGGATTATTTAGACC-GGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGACGCAtgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGCAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAG-AGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGCAGCAACTACCTCTTCCTGGGGGATTATTTAGA-CCGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAG-AGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGCAGCAACTACCTCTTCCTGGGGGATTATTTAGACC-GGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGCAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGCAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGCAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag #### Ppp1ca_ID411_5 --> 2 - 0 Original Alignment gcCTGTCTCCAGACTTGCAATCCATG-GAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcaggcCTGTCTCCAGGCTTGCAATCCATGCGAGCAAATCAGGCGTATTATGCGGCCCACAG-TGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from CESAR gcCTGTCTCCAGACTTGCAATCCATG-GAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcaggcCTGTCTCCAGGCTTGCAATCCATGCGAGCAAATCAGGCGTATTATGCGGCCCACA-GTGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Spaln_aa2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGCGAGCAAATCAGGCGTATTATGCGGCCCACAGTGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Spaln_nt2Genome GCCTGTCTCCAGACTTGCAATCCATG-GAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGCGAGCAAATCAGGCGTATTATGCGGCCCACAG-TGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Pairagon GCCTGTCTCCAGACTTGCAATCCATG-GAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGCGAGCAAATCAGGCGTATTATGCGGCCCACAG-TGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Exonerate_protein2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGCGAGCAAATCAGGCGTATTATGCGGCCCACAGTGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Exonerate_coding2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGCGAGCAAATCAGGCGTATTATGCGGCCCACAGTGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from GeneWise GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGCGAGCAAATCAGGCGTATTATGCGGCCCACAGTGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGCTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCC-GCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGCTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCC-CGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGCTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGCTCTGCCAGCATGAGCCACAGATCCTACCGGCC-CCCCCGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGCTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCC-GCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGCTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGCTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGCTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAA-GCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCT-TCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAA-GCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCC-TTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAA-GCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCT-TCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAA-GCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCT-TCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGC-TCTCTCAGAGGGGCAGCTCATTGACATCAAAggtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACC-AGCTCTCTCAGAGGGGCAGCTCATTGACATCAAAggtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGC-TCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAG-CTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Exonerate_protein2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAG--CCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCT---CTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Exonerate_coding2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTA---CATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAG--CTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCT-CTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAG-AAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcacccctTCTCTAGTC---------TCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCT-CTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagtgGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGA-GGCCTTGCAAGATGAGTGGgtaaatcctataataattgataatctcatgtagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagtgGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGA-GGCCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTcCCCTCTGCCACCAGTATCCCAGCCATTCTGAG-GCCTTGCAAGATGAGTGGgtaaatcctataataattgataatctcatgtagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTG-AGGCCTTGCAAGATGAGTGGgtaaatcctataataattgataatctcatgtagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTG-AGGCCTTGCAAGATGAGTGGgtaaatcctataataattgataatctcatgtagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGAGGCCTTGCAAGATGAGTGGgtaaatcctataataattgataatctcatgtagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGAGGCCTTGCAAGATGAGTGGgtaaatcctataataattgataatctcatgtagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGAGGCCTTGCAAGATGAGTGGgtaaatcctataataattgataatctcatgtagGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCT-CTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgaggcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcatcgtaatgtccctatcttttttgctcatttaaact Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCT-CTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcatcgtaatgtccctatctgttaaatgtcaatcccaa Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCT-CTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgaggcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTcCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCG-CTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatcttttttgctcatttaaact Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCT-CTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgaggcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatcttttttgctcatttaaact Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCT-CTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgaggcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatcttttttgctcatttaaact Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCT-CTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGG--CTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgaggcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGCTC---ACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatcttttttgctcatttaaact Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCT---GTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgaggcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCT--CCTGTACCAACACGATGCTGCCTGCCGAGTCATTGC-TCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatcttttttgctcatttaaact Alignment from GeneWise CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgaggcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatcttttttgctcatttaaact #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agacatatttcatcgtaatgtccctatctgttaaatgtcaatcccaacagccCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCT-ACAGCCCAGTGTAGTGgtaggtgttccaccttcagggccccaccagtaaatgacacttcacaagag Alignment from CESAR ctCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatatttcatcgtaatgtccctatctgttaaatgtcaatcccaacagccCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGC-TACAGCCCAGTGTAGTGgtaggtgttccaccttcagggccccaccagtaaatgacacttcacaagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agacatatttcatcgtaatgtccctatctgttaaatgtcaatcccaacagCCCTGGCCACTCTGAAACCCaCAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTA-CAGCCCAGTGTAGTGgtaggtgttccaccttcagggccccaccagtaaatgacacttcacaagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACC-ACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agacatatttcatcgtaatgtccctatctgttaaatgtcaatcccaacagCCCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCT-ACAGCCCAGTGTAGTGgtaggtgttccaccttcagggccccaccagtaaatgacacttcacaagag Alignment from Pairagon CTCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agacatatttcatcgtaatgtccctatctgttaaatgtcaatcccaacagCCCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCT-ACAGCCCAGTGTAGTGgtaggtgttccaccttcagggccccaccagtaaatgacacttcacaagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGT agacatatttcatcgtaatgtccctatctgttaaatgtcaatcccaacagCCCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTACAGCCCAGTGTAGTGgtaggtgttccaccttcagggccccaccagtaaatgacacttcacaagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGT agacatatttcatcgtaatgtccctatctgttaaatgtcaatcccaacagCCCTGGCCACTCTGAAACCCACAGGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTACAGCCCAGTGTAGTGgtaggtgttccaccttcagggccccaccagtaaatgacacttcacaagag Alignment from GeneWise CT agacatatttcatcgtaatgtccctatctgttaaatgtcaatcccaacagccctggccactctgaaacccacaggctggccttattgtacctcaggctgtgccaagctacagcccagtgtagtggtaggtgttccaccttcagggccccaccagtaaatgacacttcacaagAG #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCCTGGGATTCTTGCTCTCGACCTGTGTCCCTCAG-CACTAACAAGATTCTCACTggtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from CESAR GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCCTGGGATTCTTGCTCTCGACCTGTGTCCCTCA-GCACTAACAAGATTCTCACTggtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCT-GGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCCtGGGATTCTTGCTCTCGACCTGTGTCCCTCAGC-ACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCC-TGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCCTGGGATTCTTGCTCTCGACCTGTGTCCCTCAG-CACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Pairagon GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCCTGGGATTCTTGCTCTCGACCTGTGTCCCTCAG-CACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCCTGGGATTCTTGCTCTCGACCTGTGTCCCTCAGCACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCCTGGGATTCTTGCTCTCGACCTGTGTCCCTCAGCACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCCTGGGATTCTTGCTCTCGACCTGTGTCCCTCAGCACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGAT-GATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATCGATTCCCCAGTCAAGCTCTGGGACTTACGAA-GTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGAT-GATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATCGATTCCCCAGTCAAGCTCTGGGACTTAC-GAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATCGATTCCCCAGTCAAGCTCTGGGACTTACGAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGAT-GATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATCGATTCCCCAGTCAAGCTCTGGGACTTACG-AAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGAT-GATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATCGATTCCCCAGTCAAGCTCTGGGACTTACG-AAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATCGATTCCCCAGTCAAGCTCTGGGACTTACGAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATCGATTCCCCAGTCAAGCTCTGGGACTTACGAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATCGATTCCCCAGTCAAGCTCTGGGACTTACGAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCC-ACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagctTGCTTTCTGGACTCTATGGCCCACCCTAGGGCTTGCTGCTTATGGCTATGGGA-CCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from CESAR ctTGCTTTTTGGACTCCATGGCC-ACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagctTGCTTTCTGGACTCTATGGCCCACCCTAGGGCTTGCTGCTTATGGCTATGGG-ACCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCCACCCTAGGGCTTGCTGCTTATGGCTATGGGACCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCC-ACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCCACCCTAGGGCTTGCTGCTTATGGCTATGGGA-CCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from Pairagon CTTGCTTTTTGGACTCCATGG-CCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCCACCCTAGGGCTTGCTGCTTATGGCTATGGGA-CCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCCACCCTAGGGCTTGCTGCTTATGGCTATGGGACCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTGATGCACCCTGACCCTAACcttgtggtgtttagtcacaataacaagac Alignment from Exonerate_coding2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCCACCCTAGGGCTTGCTGCTTATGGCTATGGGACCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTGATGCACCCTGACCCTAACcttgtggtgtttagtcacaataacaagac Alignment from GeneWise CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCCACCCTAGGGCTTGCTGCTTATGGCTATGGGACCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTC-CAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgttattaatagttggcaactgtggcttactcttgtttagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCCAAGACATCATCCGACGTTTCAAGTCCTCCA-GTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagcttctggcctgaagtgtcttcctctccctagcatcccatggcatt Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTC-CAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgttattaatagttggcaactgtggcttactcttgtttagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCCAAGACATCATCCGACGTTTCAAGTCCT-CCAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagcttctggcctgaagtgtcttcctctccctagcatcccatggcatt Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgttattaatagttggcaactgtggcttactcttgtttagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCCAAGACATCATCCGACGTTTCAAGTCCTCCAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagcttctggcctgaagtgtcttcctctccctagcatcccatggcatt Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCT-CCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgttattaatagttggcaactgtggcttactcttgtttagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCCAAGACATCATCCGACGTTTCAAGTCCTCC-AGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagcttctggcctgaagtgtcttcctctccctagcatcccatggcatt Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCT-CCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgttattaatagttggcaactgtggcttactcttgtttagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCCAAGACATCATCCGACGTTTCAAGTCCTCC-AGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagcttctggcctgaagtgtcttcctctccctagcatcccatggcatt Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgttattaatagttggcaactgtggcttactcttgtttagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCCAAGACATCATCCGACGTTTCAAGTCCTCCAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagcttctggcctgaagtgtcttcctctccctagcatcccatggcatt Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgttattaatagttggcaactgtggcttactcttgtttagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCCAAGACATCATCCGACGTTTCAAGTCCTCCAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagcttctggcctgaagtgtcttcctctccctagcatcccatggcatt Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatttgctgttattaatagttggcaactgtggcttactcttgtttagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCCAAGACATCATCCGACGTTTCAAGTCCTCCAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagcttctggcctgaagtgtcttcctctccctagcatcccatggcatt #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAAT-GACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATCGACACACATCACTCTTTGGCCATCCCGGAGCTGA-GAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from CESAR GTGGCCATCCAGCTCAAT-GACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATCGACACACATCACTCTTTGGCCATCCCGGAGCTG-AGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATCGACACACATCACTCTTTGGCCATCCCGGAGCTGAGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAAT-GACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATCGACACACATCACTCTTTGGCCATCCCGGAGCTGA-GAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Pairagon GTGGCCATCCAGCTCAAT-GACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATCGACACACATCACTCTTTGGCCATCCCGGAGCTGA-GAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATCGACACACATCACTCTTTGGCCATCCCGGAGCTGAGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Exonerate_coding2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATCGACACACATCACTCTTTGGCCATCCCGGAGCTGAGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATCGACACACATCACTCTTTGGCCATCCCGGAGCTGAGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAA-GCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAACGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGC-CCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAA-GCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAACGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGC-CCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAA-GCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAcGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCC-CGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTG-CCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAACGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTG-CCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAA-GCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAACGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTG-CCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAA-GCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCC--CGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAACGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCGT---CACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAA-GCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCC--CGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAACGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCGT---CACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAA-GCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAACGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCGT-CACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta #### Pygm_ID1687_11 --> 0 - 2 Original Alignment CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGA-GCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat aaaagaggaagaccactgaagctgggtcatgactgtgttgtgttcttcagCGGGTGGCAGCTGCGTTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGACGGACGCAGTGAGACGTATCAATATGTCTCACCTGTGCATTGCTG-CTCACATGCTGTCAATAGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCatgtaagatctccagaagcaaaaacaccttaaaaacctctcttctgagatag Alignment from CESAR CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGA-GCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat aaaagaggaagaccactgaagctgggtcatgactgtgttgtgttcttcagCGGGTGGCAGCTGCGTTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGACGGACGCAGTGAGACGTATCAATATGTCTCACCTGTGCATTGCT-GCTCACATGCTGTCAATAGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCatgtaagatctccagaagcaaaaacaccttaaaaacctctcttctgagatag Alignment from Spaln_aa2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagaggaagaccactgaagctgggtcatgactgtgttgtgttcttcagCGGGTGGCAGCTGCGTTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGACGGACGCAGTGAGACGTATCAATATGTCTCACCTGTGCATTGCTGCTCACATGCTGTCAATAGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtaagatctccagaagcaaaaacaccttaaaaacctctcttctgagatag Alignment from Spaln_nt2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGA-GCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagaggaagaccactgaagctgggtcatgactgtgttgtgttcttcagCGGGTGGCAGCTGCGTTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGACGGACGCAGTGAGACGTATCAATATGTCTCACCTGTGCATTGCT-GCTCACATGCTGTCAATAGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtaagatctccagaagcaaaaacaccttaaaaacctctcttctgagatag Alignment from Pairagon CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGA-GCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagaggaagaccactgaagctgggtcatgactgtgttgtgttcttcagCGGGTGGCAGCTGCGTTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGACGGACGCAGTGAGACGTATCAATATGTCTCACCTGTGCATTGCT-GCTCACATGCTGTCAATAGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtaagatctccagaagcaaaaacaccttaaaaacctctcttctgagatag Alignment from Exonerate_protein2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGA-GCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT--GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagaggaagaccactgaagctgggtcatgactgtgttgtgttcttcagCGGGTGGCAGCTGCGTTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGACGGACGCAGTGAGACGTATCAATATGTCTCACCTGTGCATTGCTGC---TCACATGCTGTCAATAGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtaagatctccagaagcaaaaacaccttaaaaacctctcttctgagatag Alignment from Exonerate_coding2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGA-GCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT--GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagaggaagaccactgaagctgggtcatgactgtgttgtgttcttcagCGGGTGGCAGCTGCGTTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGACGGACGCAGTGAGACGTATCAATATGTCTCACCTGTGCATTGCTGC---TCACATGCTGTCAATAGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtaagatctccagaagcaaaaacaccttaaaaacctctcttctgagatag Alignment from GeneWise CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGA---------GCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagaggaagaccactgaagctgggtcatgactgtgttgtgttcttcagCGGGTGGCAGCTGCGTTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGACGGACGCAGTGAGACGTATCAATATGTCTCACCTGTGCATTGCTGC---------TCACATGCTGTCAATAGTGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtaagatctccagaagcaaaaacaccttaaaaacctctcttctgagatag #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGA-GGAGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from CESAR GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGA-GGAGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTcCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGAG-GAGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCG-GGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTG-AGGAGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Pairagon GAAGCTCACAAGATGGTT-CGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTG-AGGAGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGAGGAGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGAGGAGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGAGGAGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc #### Rasgrp2_ID1706_5 --> 1 - 0 Original Alignment cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAG-CTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG aggagttgacatcatttccagcacaagattgtcacttttctgttttaaagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCCTAGCAGAACATCTCACCTACCTGGAGTATC-TTCCTTCTGCAAGATTCTGgtcagtcctgaaggcttgttgtcagggtcaaggtcaagtgtgggttcatg Alignment from CESAR cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAG-CTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG aggagttgacatcatttccagcacaagattgtcacttttctgttttaaagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCCTAGCAGAACATCTCACCTACCTGGAGTAT-CTTCCTTCTGCAAGATTCTGgtcagtcctgaaggcttgttgtcagggtcaaggtcaagtgtgggttcatg Alignment from Spaln_aa2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAG-CTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG aggagttgacatcatttccagcacaagattgtcacttttctgttttaaagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGcCTAGCAGAACATCTCACCTACCTGGAGTATCT-TCCTTCTGCAAGATTCTGgtcagtcctgaaggcttgttgtcagggtcaaggtcaagtgtgggttcatg Alignment from Spaln_nt2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGC-TGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG aggagttgacatcatttccagcacaagattgtcacttttctgttttaaagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCCTAGCAGAACATCTCACCTACCTGGAGTATC-TTCCTTCTGCAAGATTCTGgtcagtcctgaaggcttgttgtcagggtcaaggtcaagtgtgggttcatg Alignment from Pairagon CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAG-CTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG aggagttgacatcatttccagcacaagattgtcacttttctgttttaaagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCCTAGCAGAACATCTCACCTACCTGGAGTATC-TTCCTTCTGCAAGATTCTGgtcagtcctgaaggcttgttgtcagggtcaaggtcaagtgtgggttcatg Alignment from Exonerate_protein2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG aggagttgacatcatttccagcacaagattgtcacttttctgttttaaagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCCTAGCAGAACATCTCACCTACCTGGAGTATCTTCCTTCTGCAAGATTCTGgtcagtcctgaaggcttgttgtcagggtcaaggtcaagtgtgggttcatg Alignment from Exonerate_coding2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG aggagttgacatcatttccagcacaagattgtcacttttctgttttaaagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCCTAGCAGAACATCTCACCTACCTGGAGTATCTTCCTTCTGCAAGATTCTGgtcagtcctgaaggcttgttgtcagggtcaaggtcaagtgtgggttcatg Alignment from GeneWise CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG aggagttgacatcatttccagcacaagattgtcacttttctgttttaaagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCCTAGCAGAACATCTCACCTACCTGGAGTATCTTCCTTCTGCAAGATTCTGgtcagtcctgaaggcttgttgtcagggtcaaggtcaagtgtgggttcatg #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTC-AACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG ggatgatggaagtggccaacaggatgctattctacccttttcatctacagTTTCACGACTACCACAGTTTTGTGACCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCCAACAGTGTGCCTCAGTGGGTCCAGCTAATGA-CCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtgcatacctttccgttgtgtccagaccagattctatgtacacatccaag Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTC-AACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG ggatgatggaagtggccaacaggatgctattctacccttttcatctacagTTTCACGACTACCACAGTTTTGTGACCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCCAACAGTGTGCCTCAGTGGGTCCAGCTAATG-ACCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtgcatacctttccgttgtgtccagaccagattctatgtacacatccaag Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG ggatgatggaagtggccaacaggatgctattctacccttttcatctacagTTTCACGACTACCACAGTTTTGTGACCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCCAACAGTGTGCCTCAGTGGGTCCAGCTAATGACCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtgcatacctttccgttgtgtccagaccagattctatgtacacatccaag Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTT-CAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG ggatgatggaagtggccaacaggatgctattctacccttttcatctacagTTTCACGACTACCACAGTTTTGTGACCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCCAACAGTGTGCCTCAGTGGGTCCAGCTAATGA-CCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtgcatacctttccgttgtgtccagaccagattctatgtacacatccaag Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTT-CAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG ggatgatggaagtggccaacaggatgctattctacccttttcatctacagTTTCACGACTACCACAGTTTTGTGACCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCCAACAGTGTGCCTCAGTGGGTCCAGCTAATGA-CCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtgcatacctttccgttgtgtccagaccagattctatgtacacatccaag Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG ggatgatggaagtggccaacaggatgctattctacccttttcatctacagTTTCACGACTACCACAGTTTTGTGACCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCCAACAGTGTGCCTCAGTGGGTCCAGCTAATGACCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtgcatacctttccgttgtgtccagaccagattctatgtacacatccaag Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG ggatgatggaagtggccaacaggatgctattctacccttttcatctacagTTTCACGACTACCACAGTTTTGTGACCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCCAACAGTGTGCCTCAGTGGGTCCAGCTAATGACCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtgcatacctttccgttgtgtccagaccagattctatgtacacatccaag Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG ggatgatggaagtggccaacaggatgctattctacccttttcatctacagTTTCACGACTACCACAGTTTTGTGACCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCCAACAGTGTGCCTCAGTGGGTCCAGCTAATGACCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtgcatacctttccgttgtgtccagaccagattctatgtacacatccaag #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGG-GCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGCGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGC-TGAC------TTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGG-GCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGCGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAG-CTGAC------TTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGG-GCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGcGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCT-------GACTTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGG-GCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGCGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGC-TGACT------TGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGG-GCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGCGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGC-TGACT------TGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGCGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCTGAC------TTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Exonerate_coding2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGCGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCTGAC------TTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGCGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCTGAC------TTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta #### Rce1_ID576_6 --> 2 - 1 Original Alignment TCTTTTTTGGAGTCg ccCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtgtgtctcaccttgtgtccctgccccctttgcagccCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTA-CTTTGTGTCTGCAggtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from CESAR TCTTTTTTGGAGTCg ccCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtacgtctcaccttgtgtccctgccccctttgcagccCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGT-ACTTTGTGTCTGCAggtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Spaln_aa2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTC---GTGTCTGCAG TCTTTTTTGGAGTTGgtgtgtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTcGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTACTTTGTGTCTGCAGGTTTgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Spaln_nt2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgtgtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTA-CTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Pairagon TCTTTTTTGGAGTCG CCCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgtgtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTA-CTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Exonerate_protein2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgtgtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTACTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Exonerate_coding2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgtgtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTACTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from GeneWise TCTTTTTTGGAGTC------GCCCAT------------------------------TTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAGCG- TCTTTTTTGGAGTTGGTGTGTCTCACCTTGTGTCCCTGCCCCCTTTGCAGCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTACTTTGTGTCTGCAGGTTTgtccctggaaacatacttagttgaccagggggacaaagggtagagt #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGC-TGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagccCCTTGTTCGTGGGCCCGCCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTA-TGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTggtacgtctcacctcgttgactggggcttgttgcagccCATTTTCACCACA Alignment from CESAR ccCCTCGTTCTTGGGCCCGC-TGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagccCCTTGTTCGTGGGCCCGCCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTA-TGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTggtacgtctcaccttgtgtccctgccccctttgcagccCATTTTCACCACA Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGC-TGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCcTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTAT-GCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctcgttgactggggcttgttgcagCCCATTTTCACCACA Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGC-TGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTA-TGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctcgttgactggggcttgttgcagCCCATTTTCACCACA Alignment from Pairagon CCCCTCGTTCTTGGGCCCG-CTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTA-TGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctcgttgactggggcttgttgcagCCCATTTTCACCACA Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGC-TGCCTCACAGACATGCGCTGGCTACGAAACCAAGTT--ATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTAT---GCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctcgttgactggggcttgttgcagCCCATTTTCACCACA Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGC-TGCCTCACAGACATGCGCTGGCTACGAAACCAAGTT--ATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTAT---GCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctcgttgactggggcttgttgcagCCCATTTTCACCACA Alignment from GeneWise CCCCTCGTTCTTGGGCC-CGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTAT-GCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctcgttgactggggcttgttgcagCCCATTTTCACCACA #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCC-AGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from CESAR CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGACTGGAGGGCATTT-TCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Spaln_aa2Genome CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGcCTCACCTTGATGGGTTTCAGACTGGAGGGCAT-TTTCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTT-ACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGACTGGAGGGCA-TTTTCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Pairagon CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTT-CCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Exonerate_coding2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcaggGACCACCCCTCTGTTATCAAGCGGCATTCCACTCAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGC-CTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcaggGACCACCCCTCTGTTATCAAGCGGCATTCCACTCAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTG-CCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTcAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCC-TGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCAC-CAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTCAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGC-CTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCAC-CAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTCAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGC-CTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTCAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTCAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTCAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTG-AAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGCAAATATTACTACTCTTGGAAGAAGACCCGTA-TCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTG-AAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGCAAATATTACTACTCTTGGAAGAAGACCCGT-ATCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGCAAATATTACTACTCTTGGAAGAAGACCCGTATCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTG-AAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGCAAATATTACTACTCTTGGAAGAAGACCCGTA-TCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTG-AAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGCAAATATTACTACTCTTGGAAGAAGACCCGTA-TCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGCAAATATTACTACTCTTGGAAGAAGACCCGTATCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGCAAATATTACTACTCTTGGAAGAAGACCCGTATCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGCAAATATTACTACTCTTGGAAGAAGACCCGTATCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAG-CAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAG-GGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAG-CAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAA-GGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAG-CAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAG-GGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAG-CAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAG-GGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCAC-TCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from CESAR ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCA-CTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACC-AGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCA-CTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Pairagon ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCA-CTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCA--CCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACT---CACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Exonerate_coding2genome ATCAATGGCTACACAGGACCAGG---AACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCC--AGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACT-CACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac #### Rela_ID1128_5 --> 1 - 1 Original Alignment cTTCCAGAACCTGGGGATCCAG-TGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagcTTCCAGAACCTGGGCATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAG-CATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATggtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from CESAR cTTCCAGAACCTGGGGATCCAG-TGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagcTTCCAGAACCTGGGCATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAG-CATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATggtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Spaln_aa2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Spaln_nt2Genome CTTCCAGAACCTGGGGATCCAG-TGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGC-ATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Pairagon CTTCCAGAACCTGGGGATCCAG-TGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAG-CATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Exonerate_protein2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Exonerate_coding2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from GeneWise CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGCTGTGTGAAGAAGCGAGACCTGGAGCAAGCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGA-GTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGACGTAAACCGGAACTCTGGGAGCTGTCTTGGTG-GGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGggtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGA-GTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGACGTAAACCGGAACTCTGGGAGCTGTCTTGGTG-GGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGggtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGACGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGA-GTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGACGTAAACCGGAACTCTGGGAGCTGTCTTGGT-GGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGA-GTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGACGTAAACCGGAACTCTGGGAGCTGTCTTGGT-GGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGACGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGACGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGACGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttaggCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGCATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAG-CGCCGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttaggCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGCATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAG-CGCCGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGCATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCGCCGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGCATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGC-GCCGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGCATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGC-GCCGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCT--GCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGCATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGC---GCCGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Exonerate_coding2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCT--GCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGCATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGC---GCCGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGCATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCGCCGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCT-AACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTCAACACCCGCCAGTGCCAGGCTCTGTGTGTGC-GTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from CESAR ACCTTCCTGGTGCGGAAATCT-AACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTCAACACCCGCCAGTGCCAGGCTCTGTGTGTGC-GTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAATCT-AACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTCAACACCCGCCAGTGCCAGGCTCTGTGTGTGC-GTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Pairagon ACCTTCCTGGTGCGGAAATCT-AACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTCAACACCCGCCAGTGCCAGGCTCTGTGTGTGC-GTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGC-TCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag cacatgcaggaggtcctcagtgaaacagactgggcccctctctccctcaggtGTCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTCGTAC-GCTCATC------TATTGTCGTACCaggtgaggctacctgtgggcacctgctgagctttcaggcccactcactgcac Alignment from CESAR gtGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag cacatgcaggaggtcctcagtgaaacagactgggcccctctctccctcaggtGTCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTCGTA-CGCTCATC------TATTGTCGTACCaggtgaggctacctgtgggcacctgctgagctttcaggcccactcactgcac Alignment from Spaln_aa2Genome GTGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcaggaggtcctcagtgaaacagactgggcccctctctccctcagGTGTCTCTTTGGAGgTCCTCAGAACTCATGTTCCAGGACCTCGTACGCTCATC-------TATTGTCGTACCAGgtgaggctacctgtgggcacctgctgagctttcaggcccactcactgcac Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGC-TCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcaggaggtcctcagtgaaacagactgggcccctctctccctcagGTGTCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTCGTAC-GCTCATC------TATTGTCGTACCAGgtgaggctacctgtgggcacctgctgagctttcaggcccactcactgcac Alignment from Pairagon GTGTCTCTTTGGAGG-GCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcaggaggtcctcagtgaaacagactgggcccctctctccctcagGTGTCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTCGTAC-GCTCATC------TATTGTCGTACCAGgtgaggctacctgtgggcacctgctgagctttcaggcccactcactgcac Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG cacatgcaggaggtcctcagtgaaacagactgggcccctctctccctcagGTGTCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTCGTACGCTCATC------TATTGTCGTACCAGgtgaggctacctgtgggcacctgctgagctttcaggcccactcactgcac Alignment from Exonerate_coding2genome cacatgcaggaggtcctcagtgaaacagactgggcccctctctccctcaggtgtctctttggaggtcctcagaactcatgttccaggacctcgtacgctcatctattgtcgtaccaggtgaggctacctgtgggcacctgctgagctttcaggcccactcactgcac Alignment from GeneWise cacatgcaggaggtcctcagtgaaacagactgggcccctctctccctcaggtgtctctttggaggtcctcagaactcatgttccaggacctcgtacgctcatctattgtcgtaccaggtgaggctacctgtgggcacctgctgagctttcaggcccactcactgcac #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTG-CATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcgtacaaactcccctaatactgacccatccccattgcagaaCTGGTCCTGGAGAAATCCCTGCCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCCC-CCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGAGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaagcgccgcccatcttcccctgtaccactctgctagagtacgagccat Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTG-CATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcgtacaaactcccctaatactgacccatccccattgcagaaCTGGTCCTGGAGAAATCCCTGCCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCC-CCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGAGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaagcgccgcccatcttcccctgtaccactctgctagagtacgagccat Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTG-CATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgtacaaactcccctaatactgacccatccccattgcagAACTGGTCCTGGAGAAATCCCTGcCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCCCC-CTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGAGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagcgccgcccatcttcccctgtaccactctgctagagtacgagccat Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTG-CATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgtacaaactcccctaatactgacccatccccattgcagAACTGGTCCTGGAGAAATCCCTGCCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCCC-CCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGAGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagcgccgcccatcttcccctgtaccactctgctagagtacgagccat Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTG-CATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgtacaaactcccctaatactgacccatccccattgcagAACTGGTCCTGGAGAAATCCCTGCCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCCC-CCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGAGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagcgccgcccatcttcccctgtaccactctgctagagtacgagccat Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTG-CATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCC--CGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgtacaaactcccctaatactgacccatccccattgcagAACTGGTCCTGGAGAAATCCCTGCCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCCCC---CTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGAGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagcgccgcccatcttcccctgtaccactctgctagagtacgagccat Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTG-CATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCC--CGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgtacaaactcccctaatactgacccatccccattgcagAACTGGTCCTGGAGAAATCCCTGCCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCCCC---CTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGAGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagcgccgcccatcttcccctgtaccactctgctagagtacgagccat Alignment from GeneWise AATTGGTCCTGGAGAAGTCC-CTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgtacaaactcccctaatactgacccatccccattgcagAACTGGTCCTGGAGAAATCCCTGCCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCCCC-CTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGAGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagcgccgcccatcttcccctgtaccactctgctagagtacgagccat #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTTGAT-GCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATCGCACGATTCACACGGCAAACACCGGTGGATA-CCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGAT-GCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATCGCACGATTCACACGGCAAACACCGGTGGATA-CCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATCGCACGATTCACACGGCAAACACCGGTGGATACCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGAT-GCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATCGCACGATTCACACGGCAAACACCGGTGGATA-CCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGAT-GCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATCGCACGATTCACACGGCAAACACCGGTGGATA-CCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATCGCACGATTCACACGGCAAACACCGGTGGATACCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATCGCACGATTCACACGGCAAACACCGGTGGATACCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATCGCACGATTCACACGGCAAACACCGGTGGATACCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAG-TGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from CESAR TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGGA-GTGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Spaln_aa2Genome TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAcAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGT-GCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Spaln_nt2Genome TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAG-TGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Pairagon TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAG-TGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGTGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGTGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGTGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGG-GCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctaggGCGCCAGAGATTCTATTGCGCACAGGTCATAATCGGCGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATG-CATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGG-GCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctaggGCGCCAGAGATTCTATTGCGCACAGGTCATAATCGGCGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTAT-GCATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGG-GCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTATTGCGCACAGGTCATAATCGGcGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGC-ATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGG-GCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTATTGCGCACAGGTCATAATCGGCGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATG-CATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Pairagon GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGG-GCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTATTGCGCACAGGTCATAATCGGCGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATG-CATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGG-GCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTATTGCGCACAGGTCATAATCGGCGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGCATGCTCACTGAATCAGtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGG-GCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTATTGCGCACAGGTCATAATCGGCGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGCATGCTCACTGAATCAGtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGG-GCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTATTGCGCACAGGTCATAATCGGCGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGC-ATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCC-CTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagcTTCTACCTGGCAGAGATCACACTGGCGCCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCA-GCCTGAAAACATCATGCTCACCAGCCAGggtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCC-CTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagcTTCTACCTGGCAGAGATCACACTGGCGCCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGAC-CGCAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGC-CCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCA-GCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGC-CCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGC-AGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCC-CTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAG--CCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGAC---CGCAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGC---CCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTG--GCGCCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAG-CCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTA-GCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCG-CAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGG-AAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctgaagttagatggccctattatttgattgtttatttttctatttcagcATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGCAAGTTGGCGCAACAGAGGAGCCGAGCATGG---AAGGACG-TGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTggtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGG-AAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctgaagttagatggccctattatttgattgtttatttttctatttcagcATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGCAAGTTGGCGCAACAGAGGAGCCGAGCATGG---AAGGAC-GTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTggtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGCAAGTTGGCGCAACAGAGGAGCCGAGC---ATGGAAGGACGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGG-AAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGCAAGTTGGCGCAACAGAGGAGCCGAGCATG---GAAGG-ACGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGG-AAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGCAAGTTGGCGCAACAGAGGAGCCGAGCATGG----AAGGACGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGCAAGTTGGCGCAACAGAGGAGCCGAGC---ATGGAAGGACGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGCAAGTTGGCGCAACAGAGGAGCCGAGC---ATGGAAGGACGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGCAAGTTGGCGCAACAGAGGAGCCGAGC---ATGGAAGGACGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga #### Rrp12_ID8300_23 --> 0 - 1 Original Alignment GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCG-TTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCACTTTACCTTGCTTGTGAAGATGGGACATGCTT-CCTGTGCTTTGGCTCCAACCAGGAAggttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from CESAR GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCG-TTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCACTTTACCTTGCTTGTGAAGATGGGACATG-CTTCCTGTGCTTTGGCTCCAACCAGGAAggttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Spaln_aa2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCACTTTACCTTGCTTGTGAAGATGGGACATGCTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Spaln_nt2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCG-TTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCACTTTACCTTGCTTGTGAAGATGGGACATGCTTC-CTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Pairagon GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCG-TTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCACTTTACCTTGCTTGTGAAGATGGGACATGC-TTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Exonerate_protein2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCACTTTACCTTGCTTGTGAAGATGGGACATGCTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Exonerate_coding2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCACTTTACCTTGCTTGTGAAGATGGGACATGCTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from GeneWise GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCACTTTACCTTGCTTGTGAAGATGGGACATGCTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAG-TGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAACTGCCTCATACATATTGTGAAGACACTATTGGCTG-GCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from CESAR CCCCGTTTGAAG-TGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAACTGCCTCATACATATTGTGAAGACACTATTGGCT-GGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Spaln_aa2Genome CCCCGTTTGAAG-TGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAAcTGCCTCATACATATTGTGAAGACACTATTGGCTGG-CATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Spaln_nt2Genome CCCCGTTTGAAG-TGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAACTGCCTCATACATATTGTGAAGACACTATTGGCTG-GCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Pairagon CCCCGTTTGAAG-TGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAACTGCCTCATACATATTGTGAAGACACTATTGGCTG-GCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAACTGCCTCATACATATTGTGAAGACACTATTGGCTGGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAACTGCCTCATACATATTGTGAAGACACTATTGGCTGGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAACTGCCTCATACATATTGTGAAGACACTATTGGCTGGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga #### Rrp12_ID8302_21 --> 0 - 0 Original Alignment AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gaacccagtcctgttccttcttacctggagtttcctctcttgatcttcagAGTAAGGTCCATGGAATACAGCAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGCGCCAGTTCTC-GGGCCCAGCAGCTCACTTTGTGGAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCTGCTAAAAGGgtgagtgttctgggttgacttcccacaggcgagggagggcatgtgcaagc Alignment from CESAR AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gaacccagtcctgttccttcttacctggagtttcctctcttgatcttcagAGTAAGGTCCATGGAATACAGCAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGCGCCAGTTCT-CGGGCCCAGCAGCTCACTTTGTGGAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCTGCTAAAAGGgtgagtgttctgggttgacttcccacaggcgagggagggcatgtgcaagc Alignment from Spaln_aa2Genome AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gaacccagtcctgttccttcttacctggagtttcctctcttgatcttcagAGTAAGGTCCATGGAATACAGcAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGCGCCAGTTCTCG-GGCCCAGCAGCTCACTTTGTGGAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCTGCTAAAAGGgtgagtgttctgggttgacttcccacaggcgagggagggcatgtgcaagc Alignment from Spaln_nt2Genome AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gaacccagtcctgttccttcttacctggagtttcctctcttgatcttcagAGTAAGGTCCATGGAATACAGCAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGCGCCAGTTCTC-GGGCCCAGCAGCTCACTTTGTGGAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCTGCTAAAAGGgtgagtgttctgggttgacttcccacaggcgagggagggcatgtgcaagc Alignment from Pairagon AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gaacccagtcctgttccttcttacctggagtttcctctcttgatcttcagAGTAAGGTCCATGGAATACAGCAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGCGCCAGTTCTC-GGGCCCAGCAGCTCACTTTGTGGAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCTGCTAAAAGGgtgagtgttctgggttgacttcccacaggcgagggagggcatgtgcaagc Alignment from Exonerate_protein2genome AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGT--TCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gaacccagtcctgttccttcttacctggagtttcctctcttgatcttcagAGTAAGGTCCATGGAATACAGCAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGCGCCAGTTCTCG---GGCCCAGCAGCTCACTTTGTGGAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCTGCTAAAAGGgtgagtgttctgggttgacttcccacaggcgagggagggcatgtgcaagc Alignment from Exonerate_coding2genome AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGT--TCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gaacccagtcctgttccttcttacctggagtttcctctcttgatcttcagAGTAAGGTCCATGGAATACAGCAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGCGCCAGTTCTCG---GGCCCAGCAGCTCACTTTGTGGAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCTGCTAAAAGGgtgagtgttctgggttgacttcccacaggcgagggagggcatgtgcaagc Alignment from GeneWise AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gaacccagtcctgttccttcttacctggagtttcctctcttgatcttcagAGTAAGGTCCATGGAATACAGCAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGCGCCAGTTCTCGGGCCCAGCAGCTCACTTTGTGGAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCTGCTAAAAGGgtgagtgttctgggttgacttcccacaggcgagggagggcatgtgcaagc #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGC-TTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCCTTCCTGGACAAGGCAACCGAGAAGGTTCTCGACCCTGCCA-CTCGGATTTCACCaggtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from CESAR TTGGTGAATAGC-TTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCCTTCCTGGACAAGGCAACCGAGAAGGTTCTCGACCCTGCCA-CTCGGATTTCACCaggtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Spaln_aa2Genome CGGGGATCCCAGGCGGGACACAAACTCCGCAGAAAGGATCGGCGGCGGCCC aaccttcccagttgctcaacaaagtaaatcccttattctctgaatccctag Alignment from Spaln_nt2Genome TTGGTGAATAGC-TTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCCTTCCTGGACAAGGCAACCGAGAAGGTTCTCGACCCTGCCA-CTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Pairagon TTGGTGAATAG-CTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCCTTCCTGGACAAGGCAACCGAGAAGGTTCTCGACCCTGCCA-CTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCCTTCCTGGACAAGGCAACCGAGAAGGTTCTCGACCCTGCCACTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCCTTCCTGGACAAGGCAACCGAGAAGGTTCTCGACCCTGCCACTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from GeneWise gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagctggtgaatagccttcctggacaaggcaaccgagaaggttctcgaccctgccactcggatttcaccaggtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCG-GCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagagGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACACGCC---CCCCGCCGTGCTGTGCTGGAA---ATCAAAA-TTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagagGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACA--CGCCCCCCGCCGTGCTGTGCTGGAA---ATCA-AAATTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACACGCCCCCCGCCGTGCTGTGCT------GGAAATCAAAATTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGAC--ACGCCCCCCGCCGTGCTGTGCTGGAA---ATCAAAA-TTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACA--CGCCCCCCGCCGTGCTGTGCTGGAAATC----AAAATTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACACGCCCCCCG------CCGTGCTGTGCTGGAAATCAAAATTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACA--CGCCCCCCGCCGTGCTGTGCTGGAAAT----CAAAATTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACACGCCCCCCGCCGTGCTGTGCTGGAAAT------CAAAATTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt #### Rrp12_ID8306_17 --> 0 - 1 Original Alignment ATCTGGACCCTCCTGCCTGGGTTCTGC-ACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCC-GGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from CESAR ATCTGGACCCTCCTGCCTGGGTTCTGC-ACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGC-CGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Spaln_aa2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Spaln_nt2Genome ATCTGGACCCTCCTGCCTGGGTTCTG-CACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCC-GGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Pairagon ATCTGGACCCTCCTGCCTGGGTTCTG-CACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCC-GGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Exonerate_protein2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Exonerate_coding2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from GeneWise ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCT caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTgtgaggcaggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAG-CAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCA-TGGCAAGAGTATGAATgcgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAG-CAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGC-ATGGCAAGAGTATGAATgcgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAG-CAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGcCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAT-GGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAG-CAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCA-TGGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAG-CAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCA-TGGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAG-CAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCATGGCAAGAgtatgaatgcgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAG-CAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCATGGCAAGAgtatgaatgcgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCATGGCAAGAGTATGAATGCGtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCC-CACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccagccgccaggccttttttgctgcctgctgaccttttgctcttcccagGCATTCCGGCAGCTGTCCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTG-GCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgagccttggaagcgaggtggcaactctgcatttctacgaaatgtaata Alignment from CESAR GCATTCCGGCAGCTGTCC-CACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccagccgccaggccttttttgctgcctgctgaccttttgctcttcccagGCATTCCGGCAGCTGTCCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACT-GGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgagccttggaagcgaggtggcaactctgcatttctacgaaatgtaata Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCC-CACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccagccgccaggccttttttgctgcctgctgaccttttgctcttcccagGCATTCCGGCAGCTGTCCcCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGG-CGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgagccttggaagcgaggtggcaactctgcatttctacgaaatgtaata Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGT-CCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccagccgccaggccttttttgctgcctgctgaccttttgctcttcccagGCATTCCGGCAGCTGTCCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTG-GCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgagccttggaagcgaggtggcaactctgcatttctacgaaatgtaata Alignment from Pairagon GCATTCCGGCAGCTGT-CCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccagccgccaggccttttttgctgcctgctgaccttttgctcttcccagGCATTCCGGCAGCTGTCCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTG-GCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgagccttggaagcgaggtggcaactctgcatttctacgaaatgtaata Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCC-CACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACT--GAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccagccgccaggccttttttgctgcctgctgaccttttgctcttcccagGCATTCCGGCAGCTGTCCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGG---CGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgagccttggaagcgaggtggcaactctgcatttctacgaaatgtaata Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCC-CACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACT--GAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccagccgccaggccttttttgctgcctgctgaccttttgctcttcccagGCATTCCGGCAGCTGTCCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGG---CGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgagccttggaagcgaggtggcaactctgcatttctacgaaatgtaata Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccagccgccaggccttttttgctgcctgctgaccttttgctcttcccagGCATTCCGGCAGCTGTCCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgagccttggaagcgaggtggcaactctgcatttctacgaaatgtaata #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGCGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACC-GGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGCGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAAC-CGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGcGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCG-GATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGCGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACC-GGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGCGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACC-GGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAAC--CTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGCGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCG---GATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATC---AGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAA--TCGCGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCG-GATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAA-TCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGCGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCG-GATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCT-GAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCACGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCT-CTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCT-GAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCACGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTCT-GTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCACGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCT-GAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCACGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCT-CTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCC-TGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCACGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCT-CTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCT-GAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTC--TGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCACGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTCTGT---ACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCT-GAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTC--TGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCACGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTCTGT---ACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCACGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGC-CGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccaggCTTCGGGGCCGGGGTCGACACCCGAGTTCCC------AAGGAGGAGACCCTTG-GGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGC-CGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccaggCTTCGGGGCCGGGGTCGACACCCGAGTTCCC------AAGGAGGAGACCCTT-GGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGT------CGACACCCGAGTTCCCAAGGAGGAGACCCTTGGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCC-GAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACACCCGAGTTCC------CAAGGAGGAGACCCTTG-GGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCG-CCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACACCCGAGTTCCC------AAGGAGGAGACCCTTG-GGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACAC------CCGAGTTCCCAAGGAGGAGACCCTTGGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACAC------CCGAGTTCCCAAGGAGGAGACCCTTGGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACAC------CCGAGTTCCCAAGGAGGAGACCCTTGGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGA-AAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCAGACAAGAAGGAGCAGGAGGTGATAATGCGGGCTG-TGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAaggtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGA-AAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCAGACAAGAAGGAGCAGGAGGTGATAATGCGGGCT-GTGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAaggtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCAGACAAGAAGGAGCAGGAGGTGATAATGCGGGCTGTGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGA-AAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCAGACAAGAAGGAGCAGGAGGTGATAATGCGGGCTG-TGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGG---CTTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGA-AAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCAGACAAGAAGGAGCAGGAGGTGATAATGCGGGCTG-TGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGG---CTTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCAGACAAGAAGGAGCAGGAGGTGATAATGCGGGCTGTGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCAGACAAGAAGGAGCAGGAGGTGATAATGCGGGCTGTGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCAGACAAGAAGGAGCAGGAGGTGATAATGCGGGCTGTGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGAT-GGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATCGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTAC-GCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGAT-GGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATCGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTAC-GCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATCGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGAT-GGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATCGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTAC-GCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGAT-GGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATCGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTAC-GCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGAT-GGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAG--GCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATCGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGCTGCCAGCC---CAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGAT-GGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAG--GCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATCGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGCTGCCAGCC---CAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATCGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAG-ATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGCATGGATCAAGAGTTTGGTGTGAGCACTTTAG-TGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAGGAG-ATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGCATGGATCAAGAGTTTGGTGTGAGCACTTTAG-TGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAG-ATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGcATGGATCAAGAGTTTGGTGTGAGCACTTTAGT-GAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAG-ATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGCATGGATCAAGAGTTTGGTGTGAGCACTTTAGT-GAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAGGAG-ATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGCATGGATCAAGAGTTTGGTGTGAGCACTTTAGT-GAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGCATGGATCAAGAGTTTGGTGTGAGCACTTTAGTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGCATGGATCAAGAGTTTGGTGTGAGCACTTTAGTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGCATGGATCAAGAGTTTGGTGTGAGCACTTTAGTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCC-ATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagagGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGG-AGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGgggtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from CESAR agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCC-ATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagagGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTG-GAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGgggtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAAC-CCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACcCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGA-GCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCC-ATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGG-AGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Pairagon AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAA-CCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGG-AGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCCGTCATC--AACCCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGA-GCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGT-AGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGT-TTCGGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGT-AGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGT-TTCGGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGT-AGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTcCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGTTTCGGGG-CCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAA-GAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGT---CCGACTGAACTGGAGAGAGGCACTGGCCTTGCTACTAACGTT-TCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAA-GAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGT---CCGACTGAACTGGAGAGAGGCACTGGCCTTGCTACTAACGT-TTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCCGACTGAACTGGAGAGA---GGCACTGGCCTTGCTACTAACGTTTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGT--CCGACTGAACTGGAGAGAGGCACTGGCCTTGCTACTAACGTT-TCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCCGACTGAACTGGAGAGA---GGCACTGGCCTTGCTACTAACGTTTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCT-GAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagagGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGTTGGAGGAGGCTTCTCGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGT-CTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCT-GAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagagGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGTTGGAGGAGGCTTCTCGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTG-TCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGTTGGAGGAGGCTTCTCGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCT-GAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGTTGGAGGAGGCTTCTCGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGT-CTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCT-GAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGTTGGAGGAGGCTTCTCGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTG-TCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGTTGGAGGAGGCTTCTCGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGTTGGAGGAGGCTTCTCGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGTTGGAGGAGGCTTCTCGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACT-AGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTCAGTTTCGAGGAGGGAAAAGAGGAATGTCCTTATG-CCCGGCCCGGGGCTTCACAGGCCTTATCATTggtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACT-AGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTCAGTTTCGAGGAGGGAAAAGAGGAATGTCCTTAT-GCCCGGCCCGGGGCTTCACAGGCCTTATCATTggtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTCAGTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGCCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACT-AGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTCAGTTTCGAGGAGGGAAAAGAGGAATGTCCTTATG-CCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACT-AGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTCAGTTTCGAGGAGGGAAAAGAGGAATGTCCTTATG-CCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTCAGTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGCCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTCAGTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGCCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTCAGTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGCCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAG-AAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGCAAGAAGTGGAAATCCTTCCTGAAGGCTC-ACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGtggtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAG-AAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGCAAGAAGTGGAAATCCTTCCTGAAGGCTC-ACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGtggtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGCAAGAAGTGGAAATCCTTCCTGAAGGCTCACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAG-AAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGCAAGAAGTGGAAATCCTTCCTGAAGGCTC-ACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAG-AAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGCAAGAAGTGGAAATCCTTCCTGAAGGCTCA-CTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGCAAGAAGTGGAAATCCTTCCTGAAGGCTCACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGCAAGAAGTGGAAATCCTTCCTGAAGGCTCACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGCAAGAAGTGGAAATCCTTCCTGAAGGCTCACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCT-GAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTCGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGT-CCAAGATGGTGCCCGGTGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCT-GAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTCGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAG-TCCAAGATGGTGCCCGGTGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTCGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTCCAAGATGGTGCCCGGTGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCT-GAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTCGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGT-CCAAGATGGTGCCCGGTGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCT-GAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTCGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGT-CCAAGATGGTGCCCGGTGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTCGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTCCAAGATGGTGCCCGGTGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTCGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTCCAAGATGGTGCCCGGTGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTCGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTCCAAGATGGTGCCCGGTGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGT-GGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTGTGGTGCCCACACGTCGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTT-CACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGT-GGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTGTGGTGCCCACACGTCGGGCAGCCCTTGCTGCTGAAGCGCAATGTAC-GTTCACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTGTGGTGCCCACACGTCGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTCACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGT-GGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTGTGGTGCCCACACGTCGGGCAGCCCTTGCTGCTGAAGCGCAATGTACG-TTCACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGT-GGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTGTGGTGCCCACACGTCGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTT-CACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTGTGGTGCCCACACGTCGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTCACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTGTGGTGCCCACACGTCGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTCACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTGTGGTGCCCACACGTCGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTCACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCC-TACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggtggctgcgagtgagacatgtcttgttctcttatcttcttgtctttgagCATAGCCTATATGTGGGGGCTGCTAGTGGAATTCTTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGG-GGCCACCACTGTAGCCAACaggtatgtgggtgctggatgagagacagggtagataggtgcctcaagtggag Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGAC-CCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggtggctgcgagtgagacatgtcttgttctcttatcttcttgtctttgagCATAGCCTATATGTGGGGGCTGCTAGTGGAATTCTTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATG-GGGCCACCACTGTAGCCAACaggtatgtgggtgctggatgagagacagggtagataggtgcctcaagtggag Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggtggctgcgagtgagacatgtcttgttctcttatcttcttgtctttgagCATAGCCTATATGTGGGGGCTGCTAGTGGAATTCTTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGGGCCACCACTGTAGCCAACAGgtatgtgggtgctggatgagagacagggtagataggtgcctcaagtggag Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGA-CCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggtggctgcgagtgagacatgtcttgttctcttatcttcttgtctttgagCATAGCCTATATGTGGGGGCTGCTAGTGGAATTCTTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGG-GGCCACCACTGTAGCCAACAGgtatgtgggtgctggatgagagacagggtagataggtgcctcaagtggag Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGA-CCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggtggctgcgagtgagacatgtcttgttctcttatcttcttgtctttgagCATAGCCTATATGTGGGGGCTGCTAGTGGAATTCTTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGG-GGCCACCACTGTAGCCAACAGgtatgtgggtgctggatgagagacagggtagataggtgcctcaagtggag Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGAC-CCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATG--GTGGCCACCACCGTAGCCAACAG ggtggctgcgagtgagacatgtcttgttctcttatcttcttgtctttgagCATAGCCTATATGTGGGGGCTGCTAGTGGAATTCTTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGG---GCCACCACTGTAGCCAACAGgtatgtgggtgctggatgagagacagggtagataggtgcctcaagtggag Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGAC-CCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATG--GTGGCCACCACCGTAGCCAACAG ggtggctgcgagtgagacatgtcttgttctcttatcttcttgtctttgagCATAGCCTATATGTGGGGGCTGCTAGTGGAATTCTTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGG---GCCACCACTGTAGCCAACAGgtatgtgggtgctggatgagagacagggtagataggtgcctcaagtggag Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTG---GCCACCACCGTAGCCAACAG ggtggctgcgagtgagacatgtcttgttctcttatcttcttgtctttgagCATAGCCTATATGTGGGGGCTGCTAGTGGAATTCTTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCCTACTG---TGGCTGGGACTCCAGCATCCATGTGTGCATGGGGCCACCACTGTAGCCAACAGgtatgtgggtgctggatgagagacagggtagataggtgcctcaagtggag #### Sf1_ID1665_6 --> 1 - 0 Original Alignment aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATC-ATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagaGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGA-AGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from CESAR aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATC-ATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagaGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGA-AGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Spaln_aa2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Spaln_nt2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATC-ATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGG-AAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Pairagon AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGAT-CATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGG-AAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Exonerate_protein2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Exonerate_coding2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from GeneWise AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag caaactgccctcaagttctttgataagtatggctctgttgctacccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATGATCTACAACAAAATGCAGCTTCGAGAATTGGCTCGCCTGAATGGCACTC-ACGGGAAGAAGACAACcggtaacaggaatgttgaaaaaaatgcatagaaagtttgagttttgttgaag Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag caaactgccctcaagttctttgataagtatggctctgttgctacccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATGATCTACAACAAAATGCAGCTTCGAGAATTGGCTCGCCTGAATGGCACT-CACGGGAAGAAGACAACcggtaacaggaatgttgaaaaaaatgcatagaaagtttgagttttgttgaag Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactgccctcaagttctttgataagtatggctctgttgctacccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATGATCTACAAcAAAATGCAGCTTCGAGAATTGGCTCGCCTGAATGGCACTCA-CGGGAAGAAGACAACCGgtaacaggaatgttgaaaaaaatgcatagaaagtttgagttttgttgaag Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactgccctcaagttctttgataagtatggctctgttgctacccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATGATCTACAACAAAATGCAGCTTCGAGAATTGGCTCGCCTGAATGGCACTC-ACGGGAAGAAGACAACCGgtaacaggaatgttgaaaaaaatgcatagaaagtttgagttttgttgaag Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactgccctcaagttctttgataagtatggctctgttgctacccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATGATCTACAACAAAATGCAGCTTCGAGAATTGGCTCGCCTGAATGGCACTC-ACGGGAAGAAGACAACCGgtaacaggaatgttgaaaaaaatgcatagaaagtttgagttttgttgaag Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACT--CTACGGGAAGATGATAATAG caaactgccctcaagttctttgataagtatggctctgttgctacccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATGATCTACAACAAAATGCAGCTTCGAGAATTGGCTCGCCTGAATGGCACTCA---CGGGAAGAAGACAACCGgtaacaggaatgttgaaaaaaatgcatagaaagtttgagttttgttgaag Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACT--CTACGGGAAGATGATAATAG caaactgccctcaagttctttgataagtatggctctgttgctacccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATGATCTACAACAAAATGCAGCTTCGAGAATTGGCTCGCCTGAATGGCACTCA---CGGGAAGAAGACAACCGgtaacaggaatgttgaaaaaaatgcatagaaagtttgagttttgttgaag Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactgccctcaagttctttgataagtatggctctgttgctacccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATGATCTACAACAAAATGCAGCTTCGAGAATTGGCTCGCCTGAATGGCACTCACGGGAAGAAGACAACCGgtaacaggaatgttgaaaaaaatgcatagaaagtttgagttttgttgaag #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGT-GGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGAC-ACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGT-GGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGA-CACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGT-GGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCcGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACA-CCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGT-GGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGA-CACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGG-TGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGA-CACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGT-GGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGA--CCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACA---CCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGT-GGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGA--CCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACA---CCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGT-GGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACA-CCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTAT-GGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from CESAR GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTA-TGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Spaln_aa2Genome GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTcGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATG-GATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Spaln_nt2Genome GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTAT-GGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Pairagon GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATG-GATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACCTGTCAAGGAAGAAGTTGCGCCGAATGAATC-GTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACCTGTCAAGGAAGAAGTTGCGCCGAATGAATC-GTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAAcCTGTCAAGGAAGAAGTTGCGCCGAATGAATCG-TTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAAC-TGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACCTGTCAAGGAAGAAGTTGCGCCGAATGAATCGTTT-ACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACCTGTCAAGGAAGAAGTTGCGCCGAATGAATCG-TTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACCTGTCAAGGAAGAAGTTGCGCCGAATGAATCGTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACCTGTCAAGGAAGAAGTTGCGCCGAATGAATCGTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACCTGTCAAGGAAGAAGTTGCGCCGAATGAATCGTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac #### Sf3b2_ID908_10 --> 0 - 0 Original Alignment CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATG-GAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aagggggcatggggacatattcccagagccccatctgctcctgttttcagCTAACAGATGATGTGAGGAAGGAAAAAGAAAAAGAGCCAGAGAAGCTTGACAAGATGCGAAAGCTCTGCAGTTCCCAAGAAAAAGGGCT-TGAAGAGGAGCATAAAGACAGTGATGATGATAGCAGTGATGATGAACAGgtaagaacccctatgtgggagtgagctgcagggggggcctggggaaatgg Alignment from CESAR CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATG-GAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aagggggcatggggacatattcccagagccccatctgctcctgttttcagCTAACAGATGATGTGAGGAAGGAAAAAGAAAAAGAGCCAGAGAAGCTTGACAAGATGCGAAAGCTCTGCAGTTCCCAAGAAAAAGG-GCTTGAAGAGGAGCATAAAGACAGTGATGATGATAGCAGTGATGATGAACAGgtaagaacccctatgtgggagtgagctgcagggggggcctggggaaatgg Alignment from Spaln_aa2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aagggggcatggggacatattcccagagccccatctgctcctgttttcagCTAACAGATGATGTGAGGAAGGAAAAAGAAAAAGAGCCAGAGAAGCTTGACAAGATGCGAAAGCTCTGCAGTTCCCAAGAAAAAGGGCTTGAAGAGGAGCATAAAGACAGTGATGATGATAGCAGTGATGATGAACAGgtaagaacccctatgtgggagtgagctgcagggggggcctggggaaatgg Alignment from Spaln_nt2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATG-GAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aagggggcatggggacatattcccagagccccatctgctcctgttttcagCTAACAGATGATGTGAGGAAGGAAAAAGAAAAAGAGCCAGAGAAGCTTGACAAGATGCGAAAGCTCTGCAGTTCCCAAGAAAAAGGGC-TTGAAGAGGAGCATAAAGACAGTGATGATGATAGCAGTGATGATGAACAGgtaagaacccctatgtgggagtgagctgcagggggggcctggggaaatgg Alignment from Pairagon CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATG-GAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aagggggcatggggacatattcccagagccccatctgctcctgttttcagCTAACAGATGATGTGAGGAAGGAAAAAGAAAAAGAGCCAGAGAAGCTTGACAAGATGCGAAAGCTCTGCAGTTCCCAAGAAAAAGGGC-TTGAAGAGGAGCATAAAGACAGTGATGATGATAGCAGTGATGATGAACAGgtaagaacccctatgtgggagtgagctgcagggggggcctggggaaatgg Alignment from Exonerate_protein2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aagggggcatggggacatattcccagagccccatctgctcctgttttcagCTAACAGATGATGTGAGGAAGGAAAAAGAAAAAGAGCCAGAGAAGCTTGACAAGATGCGAAAGCTCTGCAGTTCCCAAGAAAAAGGGCTTGAAGAGGAGCATAAAGACAGTGATGATGATAGCAGTGATGATGAACAGgtaagaacccctatgtgggagtgagctgcagggggggcctggggaaatgg Alignment from Exonerate_coding2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aagggggcatggggacatattcccagagccccatctgctcctgttttcagCTAACAGATGATGTGAGGAAGGAAAAAGAAAAAGAGCCAGAGAAGCTTGACAAGATGCGAAAGCTCTGCAGTTCCCAAGAAAAAGGGCTTGAAGAGGAGCATAAAGACAGTGATGATGATAGCAGTGATGATGAACAGgtaagaacccctatgtgggagtgagctgcagggggggcctggggaaatgg Alignment from GeneWise CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aagggggcatggggacatattcccagagccccatctgctcctgttttcagCTAACAGATGATGTGAGGAAGGAAAAAGAAAAAGAGCCAGAGAAGCTTGACAAGATGCGAAAGCTCTGCAGTTCCCAAGAAAAAGGGCTTGAAGAGGAGCATAAAGACAGTGATGATGATAGCAGTGATGATGAACAGgtaagaacccctatgtgggagtgagctgcagggggggcctggggaaatgg #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAA-AAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAACAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGA-GAACTCTCAG---ggtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAA-AAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAACAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAG-AGAACTCTCAG---ggtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAA-AAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAcAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGAGAACTCTCAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAA-AAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagAT---TGACCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAACAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGA-GAACTCT---CAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAA-AAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagAT---TGACCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAACAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGA-GAACTCT---CAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAA-AAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAACAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGAGAACTCTCAGGGTAAatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAA-AAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAACAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGAGAACTCTCAGGGTAAatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAACAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGAGAACTCT---CAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACAA-GGCAGCCCCTGCTGGCATGagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from CESAR AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACA-AGGCAGCCCCTGCTGGCATGagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACC--ATGGCAGCCCCTGGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagagagCGGCAACCGTGC---GGCATCGCACAAGTGGTCATCTCTCGGATCACAagGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCA-CAAGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Pairagon AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCC---CTGGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACAA-GGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACC--ATGGCAGCCCCTGGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACAAGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Exonerate_coding2genome AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACC--ATGGCAGCCCCTGGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGCGGCATCGCACAAGTGGTCATCTCTCGGATCACAAGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from GeneWise cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagagagcggcaaccgtgcggcatcgcacaagtggtcatctctcggatcacaaggcagcccctgctggcatgagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacaggCAGTTGGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAA-GTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacaggCAGTTGGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGAC-TAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTcGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGC---CACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGT--CGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGG-AGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcgtctgcttctgctgtgtcattcacttaactgctgttttgcaggCCA---CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGC-CTGGAAACTCCAAGAGGACTTGCAGAGGgtaagttgtctacctgggaagggtgcacagggctgccctggacaagggct Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcgtctgcttctgctgtgtcattcacttaactgctgttttgcaggCCA--CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATG-CCTGGAAACTCCAAGAGGACTTGCAGAGGgtaagttgtctacctgggaagggtgcacagggctgccctggacaagggct Alignment from Spaln_aa2Genome ---CCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcgtctgcttctgctgtgtcattcacttaactgctgttttgcagGCCACCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCC-TGGAAACTCCAAGAGGACTTGCAGAGGgtaagttgtctacctgggaagggtgcacagggctgccctggacaagggct Alignment from Spaln_nt2Genome GCCAGAACCCGGG-AGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcgtctgcttctgctgtgtcattcacttaactgctgttttgcagGCC---ACCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGC-CTGGAAACTCCAAGAGGACTTGCAGAGGgtaagttgtctacctgggaagggtgcacagggctgccctggacaagggct Alignment from Pairagon GCCAGAACCCGGG-AGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcgtctgcttctgctgtgtcattcacttaactgctgttttgcagGCC---ACCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGC-CTGGAAACTCCAAGAGGACTTGCAGAGGgtaagttgtctacctgggaagggtgcacagggctgccctggacaagggct Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcgtctgcttctgctgtgtcattcacttaactgctgttttgcagGCCA---CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCCTGGAAACTCCAAGAGGACTTGCAGAGGgtaagttgtctacctgggaagggtgcacagggctgccctggacaagggct Alignment from Exonerate_coding2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcgtctgcttctgctgtgtcattcacttaactgctgttttgcagGCCA--CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCC-TGGAAACTCCAAGAGGACTTGCAGAGGgtaagttgtctacctgggaagggtgcacagggctgccctggacaagggct Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tgtggagcgtctgcttctgctgtgtcattcacttaactgctgttttgcagGCCA---CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCCTGGAAACTCCAAGAGGACTTGCAGAGGgtaagttgtctacctgggaagggtgcacagggctgccctggacaagggct #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttATGCCAGAAGCTGGTAGTGAGACCTTGGAGGATGAATGGCAGTCCATCCTCAGAGATCACCTCCACTTGCAACACAATTCTGGAGT-ACTGTCACGGGAAggtaagtctgccagttggatgtttactccctcagaccaagcttccctttct Alignment from CESAR ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaatggcagtccatcctcagagatcacctccacttgcaacacaattctggagtactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccagagctctgtgtct Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagTTATGCCAGAAGCTGGTAGTGAGACCTTGGAGGATGAATGGCAGTCCATCcTCAGAGATCACCTCCACTTGCAACACAATTCTGGAGTA-CTGTCACGGGAAGgtaagtctgccagttggatgtttactccctcagaccaagcttccctttct Alignment from Spaln_nt2Genome GTCCATCTCAGAGATCGCCTCCACTTG-CAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaatggcagTCCAT-CCTCAGAGATCACCTCCACTTGCAACACAATTCTGGAGT-ACTGTCACGGGAAGgtaagtctgccagttggatgtttactccctcagaccaagcttccctttct Alignment from Pairagon ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaatggcagtccatcctcagagatcacctccacttgcaacacaattctggagtactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccaagcttccctttct Alignment from Exonerate_protein2genome ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaatggcagtccatcctcagagatcacctccacttgcaacacaattctggagtactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccaagcttccctttct Alignment from Exonerate_coding2genome ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaatggcagtccatcctcagagatcacctccacttgcaacacaattctggagtactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccaagcttccctttct Alignment from GeneWise ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaatggcagtccatcctcagagatcacctccacttgcaacacaattctggagtactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccaagcttccctttct #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGCAAGGCCTCCATCCTGCCCAGGACTCTGTCTC-ACGGAATTCCATCAGTAAGagtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGCAAGGCCTCCATCCTGCCCAGGACTCTGTCT-CACGGAATTCCATCAGTAAGagtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGcAAGGCCTCCATCCTGCCCAGGACTCTGTCTCA-CGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGCAAGGCCTCCATCCTGCCCAGGACTCTGTCTC-ACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGCAAGGCCTCCATCCTGCCCAGGACTCTGTCTC-ACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGCAAGGCCTCCATCCTGCCCAGGACTCTGTCTCACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGCAAGGCCTCCATCCTGCCCAGGACTCTGTCTCACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from GeneWise -----------------------------------------------CAGGACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA GCCAAGTTAACATTGGATGCCATATTATGTGTTCTCACTTTACCCTACAGGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGCAAGGCCTCCATCCTGCCCAGGACTCTGTCTCACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACC-ACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagcTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCCACACCAGACCTCCTCCTTGTCACCACAG-CAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattattgcatcaaccctttt Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACC-ACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagcTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCCACACCAGACCTCCTCCTTGTCACCACAG-CAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattatgtgttctcactttac Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCCACACCAGACCTCCTCCTTGTCACCACAGCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattattgcatcaaccctttt Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACA-CCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCCACACCAGACCTCCTCCTTGTCACCACAG-CAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattattgcatcaaccctttt Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACA-CCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCCACACCAGACCTCCTCCTTGTCACCACAG-CAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattattgcatcaaccctttt Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCCACACCAGACCTCCTCCTTGTCACCACAGCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattattgcatcaaccctttt Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACC---ACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCCACACC--AGACCTCCTCCTTGTCACCAC-AGCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattattgcatcaaccctttt Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCCACACCAGACCTCCTCCTTGTCACCACAGCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGGTAGGCTGCCAAGTTAACATTGGATGCCATATTATTGCATCAACCCTTTT #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGC-CGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttaggGTGGCAGTGAGTCCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAG-AGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from CESAR gGTGGCAGTGAGC-CGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttaggGTGGCAGTGAGTCCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAG-AGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGC-CGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTcCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGA-GGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAG-CCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAG-AGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Pairagon GGTGGCAGTGAG-CCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAG-AGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCC-GTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagaaCATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTCTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGG-CCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactctccactctgctctc Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCC-GTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagaaCATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTCTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAG-GGGCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactattttgcttgtttct Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTCTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactctccactctgctctc Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGC-CGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTCTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCC-CCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactctccactctgctctc Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGC-CGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTCTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGA-GGGGCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactctccactctgctctc Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTCTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactctccactctgctctc Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTCTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactctccactctgctctc Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTCTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactctccactctgctctc #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCCTTC-CTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagtgTTTGCCTTTTCTAGTAGTTATGCCTTTCCTGTTGATTGCCAAGTCACTGCAGGGAA-TGGCTCATCCTGCTCATCTGTGGCTggtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagtgTTTGCCTTTTCTAGTAGTTATGCCTTTCCTGTTGATTGCCAAGTCACTGCAGGGAA-TGGCTCATCCTGCTCATCTGTGGCTggtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCCTGTTGATTGCCAAGTCACTGCAGGGAATGGCTCATCCTGCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTT-CCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCCTGTTGATTGCCAAGTCACTGCAGGGAAT-GGCTCATCCTGCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCCTGTTGATTGCCAAGTCACTGCAGGGAAT-GGCTCATCCTGCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCCTGTTGATTGCCAAGTCACTGCAGGGAATGGCTCATCCTGCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCCTGTTGATTGCCAAGTCACTGCAGGGAATGGCTCATCCTGCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCCTGTTGATTGCCAAGTCACTGCAGGGAATGGCTCATCCTGCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagggATGGGGGTCCTTCGCTCAGCCCTGCGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCT-CACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCaggtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagggATGGGGGTCCTTCGCTCAGCCCTGCGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCG-CCTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCaggtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGCGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGCGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCC-TCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGCGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCC-TCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGCGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGCGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGCGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTG-GACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtaggTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTGGAAGCAATATATTCCTCCTCCAGTCAATTATTGGGATTGTGCGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCA-CCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATggtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTG-GACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtaggTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTGGAAGCAATATATTCCTCCTCCAGTCAATTATTGGGATTGTGCGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCA-CCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATggtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTG-GACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTGGAAGCAATATATTCCTCCTCCAGTCAATTATTGGGATTGTGcGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCAC-CGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTG-GACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTGGAAGCAATATATTCCTCCTCCAGTCAATTATTGGGATTGTGCGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCA-CCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTG-GACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTGGAAGCAATATATTCCTCCTCCAGTCAATTATTGGGATTGTGCGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCA-CCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTGGAAGCAATATATTCCTCCTCCAGTCAATTATTGGGATTGTGCGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTGGAAGCAATATATTCCTCCTCCAGTCAATTATTGGGATTGTGCGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTGGAAGCAATATATTCCTCCTCCAGTCAATTATTGGGATTGTGCGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCA-GCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCACGCTATGGACAAGGAACCAAGCAGGGACCAGG-TGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from CESAR GTGCTGCGGTCA-GCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCACGCTATGGACAAGGAACCAAGCAGGGACCAGG-TGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCACGCTATGGACAAGGAACCAAGCAGGGACCAGGTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Spaln_nt2Genome GTGCTGCGGTCA-GCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCACGCTATGGACAAGGAACCAAGCAGGGAC-CAGGTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Pairagon GTGCTGCGGTCA-GCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCACGCTATGGACAAGGAACCAAGCAGGGAC-CAGGTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCACGCTATGGACAAGGAACCAAGCAGGGACCAGGTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCACGCTATGGACAAGGAACCAAGCAGGGACCAGGTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCACGCTATGGACAAGGAACCAAGCAGGGACCAGGTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACC-TTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCAT-TTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCcgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACC-TTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCA-TTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCcgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCAC-CTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCAT-TTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCA-CCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATTT-CAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCT---GCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCCTTCCCGCT---GCACTGTCTGTTTTCCTTCCTGCTGGCATTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAG-TCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAACTCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGT-CGGTTGTCTAGCAGACaggtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAG-TCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAACTCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTG-TCGGTTGTCTAGCAGACaggtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAG-TCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAAcTCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTC-GGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAG-TCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAACTCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTG-TCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAG-TCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAACTCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTG-TCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAACTCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAACTCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGA---GCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAA---CTCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACC-CAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagtgTTAGAATGGACAAGCCCTAAAACCCCAAGCCTTGGTGACCACACTGTCAATGA-TTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCaggtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACC-CAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagtgTTAGAATGGACAAGCCCTAAAACCCCAAGCCTTGGTGACCACACTGTCAATG-ATTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCaggtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCCAAGCCTTGGTGACCACACTGTCAATGATTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCT-AAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCCAAGCCTTGGTGACCACACTGTCAATGA-TTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAA-CCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCCAAGCCTTGGTGACCACACTGTCAATGA-TTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCCAAGCCTTGGTGACCACACTGTCAATGATTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCCAAGCCTTGGTGACCACACTGTCAATGATTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from GeneWise -------------------------------------------------ATGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG TACGGTGCTCACAATTTCACCTGCTAAGTCAACTGTTGGTTTCCTTACAGTGTTAGAATGGACAAGCCCTAAAACCCCAAGCCTTGGTGACCACACTGTCAATGATTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGA-GTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaaagagaccataccaacatcagtgtttatcccaccattccaggTTCTTCATTGAATCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGACGTGGCCTGCATCAATGGGAAACAAGAAG-GGGGCCTAAGCTGTGTATAGAGgtgagttctatttattcctagacactgcctgaaatccgacccaggtcctc Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGA-GTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaaagagaccataccaacatcagtgtttatcccaccattccaggTTCTTCATTGAATCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGACGTGGCCTGCATCAATGGGAAACAAGAA-GGGGGCCTAAGCTGTGTATAGAGgtgagttctatttattcctagacactgcctgaaatccgacccaggtcctc Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGA-GTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaaagagaccataccaacatcagtgtttatcccaccattccagGTTCTTCATTGAATCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAcGTGGCCTGCATCAATGGGAAACAAGAAGG-GGGCCTAAGCTGTGTATAGAGgtgagttctatttattcctagacactgcctgaaatccgacccaggtcctc Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGA-GTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaaagagaccataccaacatcagtgtttatcccaccattccagGTTCTTCATTGAATCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGACGTGGCCTGCATCAATGGGAAACAAGAAGG-GGGCCTAAGCTGTGTATAGAGgtgagttctatttattcctagacactgcctgaaatccgacccaggtcctc Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGA-GTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaaagagaccataccaacatcagtgtttatcccaccattccagGTTCTTCATTGAATCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGACGTGGCCTGCATCAATGGGAAACAAGAAG-GGGGCCTAAGCTGTGTATAGAGgtgagttctatttattcctagacactgcctgaaatccgacccaggtcctc Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaaagagaccataccaacatcagtgtttatcccaccattccagGTTCTTCATTGAATCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGACGTGGCCTGCATCAATGGGAAACAAGAAGGGGGCCTAAGCTGTGTATAGAGgtgagttctatttattcctagacactgcctgaaatccgacccaggtcctc Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaaagagaccataccaacatcagtgtttatcccaccattccagGTTCTTCATTGAATCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGACGTGGCCTGCATCAATGGGAAACAAGAAGGGGGCCTAAGCTGTGTATAGAGgtgagttctatttattcctagacactgcctgaaatccgacccaggtcctc Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG atattgaaaaagagaccataccaacatcagtgtttatcccaccattccagGTTCTTCATTGAATCAGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGACGTGGCCTGCATCAATGGGAAACAAGAAGGGGGCCTAAGCTGTGTATAGAGgtgagttctatttattcctagacactgcctgaaatccgacccaggtcctc #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTG-GCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagagATGGAGATTGTGAGGACAGCACTGCGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCC-CTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCaggtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTG-GCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagagATGGAGATTGTGAGGACAGCACTGCGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGC-CCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCaggtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGCGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTG-GCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGCGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCC-CTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTG-GCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGCGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCC-CTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTG-GCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGC--CTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGCGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCC---TTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGC---TGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTG--CGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCC-TTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTG-GCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGCGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCC-TTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAG-ACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGCACCCAAAGCACGTATCGGGGCATTGTGG-CTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from CESAR GTGCGGTTACAG-ACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGCACCCAAAGCACGTATCGGGGCATTGTG-GCTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGCACCCAAAGCACGTATCGGGGCATTGTGGCTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Spaln_nt2Genome GTGCGGTTACAG-ACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGCACCCAAAGCACGTATCGGGGCATTGTGG-CTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Pairagon GTGCGGTTACAG-ACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGCACCCAAAGCACGTATCGGGGCATTGTGG-CTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGCACCCAAAGCACGTATCGGGGCATTGTGGCTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Exonerate_coding2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGCACCCAAAGCACGTATCGGGGCATTGTGGCTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGCACCCAAAGCACGTATCGGGGCATTGTGGCTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC-CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTGAACTCTGTCCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCA-GTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC-CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTGAACTCTGTCCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCC-AGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTGAACTCTGTCCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCAGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC-CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTGAACTCTGTCCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCA-GTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGT-CCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTGAACTCTGTCCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCA-GTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC-CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCC--ACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTGAACTCTGTCCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCAG---TCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC-CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCC--ACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTGAACTCTGTCCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCAG---TCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTGAACTCTGTCCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCAGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtaggtGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCC-CCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtaggtGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTC-CCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTcCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCC-CCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCC-CCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCC-CCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTC--CTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCC---CCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCT-TGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCC-CCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTC-ACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCCACAGTAACCCTATCTGTTTTTCCTGCTATCACAG-CATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTC-ACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCCACAGTAACCCTATCTGTTTTTCCTGCTATCACAG-CATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTT-CACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCCACAGTAACCCTATCTGTTTTTCCTGCTATCACAG-CATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTT-CACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCCACAGTAACCCTATCTGTTTTTCCTGCTATCACAG-CATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATC-TGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacaggtCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATT-GTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from CESAR gtCTGTTCTTCAACCCTATC-TGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacaggtCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGAT-TGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTAT-CTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATT-GTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Pairagon GTCTGTTCTTCAACCCTAT-CTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATT-GTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCT-TGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGC-TTGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTTGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCT-TGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCT-TGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTTGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTTGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTTGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAAC-GGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat cgttgctaagggggaccctccagcttccatggccttaactatcaacccagtCACTTGGAGTTGAATCGGAATCAGATCTATCCCACCGAGAGCCTTCT-TCCCTACAGAAAGCTGCGGAGGatgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from CESAR cCGCCTGGAGTTGAAC-GGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat cgttgctaagggggaccctccagcttccatggccttaactatcaacccagtCACTTGGAGTTGAATCGGAATCAGATCTATCCCACCGAGAGCCTTC-TTCCCTACAGAAAGCTGCGGAGGatgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATCGGAATCAGATCTATCCCACCGAGAGCCTTCTTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAA-CGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATCGGAATCAGATCTATCCCACCGAGAGCCTTCT-TCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Pairagon CCGCCTGGAGTTGAA-CGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATCGGAATCAGATCTATCCCACCGAGAGCCTTCT-TCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATCGGAATCAGATCTATCCCACCGAGAGCCTTCTTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATCGGAATCAGATCTATCCCACCGAGAGCCTTCTTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATCGGAATCAGATCTATCCCACCGAGAGCCTTCTTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcaggACACTGAACAACAATCAACATCAGCACCATTCCTGTGTCGAGTTTCA-TCATATTCCTAAGCTTCGTACTttgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from CESAR gACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcaggACACTGAACAACAATCAACATCAGCACCATTCCTGTGTCGAGTTTC-ATCATATTCCTAAGCTTCGTACTttgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Spaln_aa2Genome GACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATcAACATCAGCACCATTCCTGTGTCGAGTTTCAT-CATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Spaln_nt2Genome GACCCTGAACAACAA-CAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATCAACATCAGCACCATTCCTGTGTCGAGTTTC-ATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Pairagon GACCCTGAACAACAA-CAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATCAACATCAGCACCATTCCTGTGTCGAGTTTC-ATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATCAACATCAGCACCATTCCTGTGTCGAGTTTCATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Exonerate_coding2genome ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcaggacactgaacaacaatcaacatcagcaccattcctgtgtcgagtttcatcatattcctaagcttcgtactttgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATCAACATCAGCACCATTCCTGTGTCGAGTTTCATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCT-GGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTCGGTGGCAAAGCGACTTTGGTGATGAAGAAAG-TGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCT-GGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTCGGTGGCAAAGCGACTTTGGTGATGAAGAAA-GTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTCGGTGGCAAAGCGACTTTGGTGATGAAGAAAGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCT-GGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTCGGTGGCAAAGCGACTTTGGTGATGAAGAAA-GTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCT-GGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTCGGTGGCAAAGCGACTTTGGTGATGAAGAAA-GTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTCGGTGGCAAAGCGACTTTGGTGATGAAGAAAGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTCGGTGGCAAAGCGACTTTGGTGATGAAGAAAGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTCGGTGGCAAAGCGACTTTGGTGATGAAGAAAGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTG-CGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accagcacagcaacactgacactgatgcgatatattttttttcttcccagggCGGTTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCCGCTTCACAGTGCCCATCCCTGCACTCAACAACAGCCCTC-AGTCAAGGAATTTTTCCGAgtgagcatgtgtgctaacaagggtccccctcaatcaaatccacctgcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTG-CGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accagcacagcaacactgacactgatgcgatatattttttttcttcccagggCGGTTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCCGCTTCACAGTGCCCATCCCTGCACTCAACAACAGCCCTCAG-TCAAGGAATTTTTCCGAgtgagcatgtgtgctaacaagggtccccctcaatcaaatccacctgcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTG-CGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTT----- accagcacagcaacactgacactgatgcgatatattttttttcttcccagGGCGGTTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGcCGCTTCACAGTGCCCATCCCTGCACTCAACAACAGCCCTCAGTCAAGGAATTTTTCCGAgtgagcatgtgtgctaacaagggtccccctcaatcaaatccacctgcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGC-GCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accagcacagcaacactgacactgatgcgatatattttttttcttcccagGGCGGTTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCCGCTTCACAGTGCCCATCCCTGCACTCAACAACAGCCCTC-AGTCAAGGAATTTTTCCGAgtgagcatgtgtgctaacaagggtccccctcaatcaaatccacctgcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTG-CGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accagcacagcaacactgacactgatgcgatatattttttttcttcccagGGCGGTTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCCGCTTCACAGTGCCCATCCCTGCACTCAACAACAGCCCTC-AGTCAAGGAATTTTTCCGAgtgagcatgtgtgctaacaagggtccccctcaatcaaatccacctgcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTG-CGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAA accagcacagcaacactgacactgatgcgatatattttttttcttcccagGGCGGTTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCCGCTTCACAGTGCCCATCCCTGCACTCAACAACAGCCCTCAGtcaaggaatttttccgagtgagcatgtgtgctaacaagggtccccctcaatcaaatccacctgcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTG-CGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAA accagcacagcaacactgacactgatgcgatatattttttttcttcccagGGCGGTTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCCGCTTCACAGTGCCCATCCCTGCACTCAACAACAGCCCTCAGtcaaggaatttttccgagtgagcatgtgtgctaacaagggtccccctcaatcaaatccacctgcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accagcacagcaacactgacactgatgcgatatattttttttcttcccagGGCGGTTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCCGCTTCACAGTGCCCATCCCTGCACTCAACAACAGCCCTCAGTCAAGGAATTTTTCCGAgtgagcatgtgtgctaacaagggtccccctcaatcaaatccacctgcctc #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAG-CTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCCTTCATGGGGACTTGGCCTATACTCACCGGAATC-CTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCggtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAG-CTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCCTTCATGGGGACTTGGCCTATACTCACCGGAAT-CCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCggtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCCTTCATGGGGACTTGGCCTATACTCACCGGAATCCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGC-TCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCCTTCATGGGGACTTGGCCTATACTCACCGGAATC-CTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAG-CTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCCTTCATGGGGACTTGGCCTATACTCACCGGAATC-CTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCCTTCATGGGGACTTGGCCTATACTCACCGGAATCCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Exonerate_coding2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCCTTCATGGGGACTTGGCCTATACTCACCGGAATCCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from GeneWise TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagTTCAGGCTTAGGTCACGCTTGCACTTGTCTTTCCAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCCTTCATGGGGACTTGGCCTATACTCACCGGAATCCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcCTGGCAGACAACTATCATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGG-AGTGAACCAACTCAAGaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from CESAR gcCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcCTGGCAGACAACTATCATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGG-AGTGAACCAACTCAAGaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Spaln_aa2Genome GACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcctggcagACAACTATCATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAGTG-AACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Spaln_nt2Genome GCCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATCATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGA-GTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Pairagon GCCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATCATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGG-AGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATCATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATCATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from GeneWise ----------------------------------------------------CTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG TGGTGGCACTGGGTGTGCACATTCATCCGTGCTTCTCTGTCTCCACTTAGGCCTGGCAGACAACTATCATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCAC-ACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccacacctcatacctggaaaagaacacctgtgttcaatttctagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCCTTCCTAGTTGAATATCACCACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGA-GCACTCCCACAAGtgtatgctacatgtgaggctggttggtggcactgggtgtgcacattcatcc Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCAC-ACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccacacctcatacctggaaaagaacacctgtgttcaatttctagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCCTTCCTAGTTGAATATCACCACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTG-AGCACTCCCACAAGtgtatgctacatgtgaggctggttggtggcactgggtgtgcacattcatcc Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCAC-ACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctcatacctggaaaagaacacctgtgttcaatttctagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCCTTCCTAGTTGAATATCACcACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGAG-CACTCCCACAAGTgtatgctacatgtgaggctggttggtggcactgggtgtgcacattcatcc Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCA-CACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctcatacctggaaaagaacacctgtgttcaatttctagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCCTTCCTAGTTGAATATCACCACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGA-GCACTCCCACAAGTgtatgctacatgtgaggctggttggtggcactgggtgtgcacattcatcc Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCA-CACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctcatacctggaaaagaacacctgtgttcaatttctagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCCTTCCTAGTTGAATATCACCACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGA-GCACTCCCACAAGTgtatgctacatgtgaggctggttggtggcactgggtgtgcacattcatcc Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCAC-ACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTT--ATGCACTCCCACAAGT actgcaccacacctcatacctggaaaagaacacctgtgttcaatttctagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCCTTCCTAGTTGAATATCACCACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGAG---CACTCCCACAAGTgtatgctacatgtgaggctggttggtggcactgggtgtgcacattcatcc Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCAC-ACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTT--ATGCACTCCCACAAGT actgcaccacacctcatacctggaaaagaacacctgtgttcaatttctagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCCTTCCTAGTTGAATATCACCACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGAG---CACTCCCACAAGTgtatgctacatgtgaggctggttggtggcactgggtgtgcacattcatcc Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCAC-ACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTGC------------------------------------------------ actgcaccacacctcatacctggaaaagaacacctgtgttcaatttctagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCCTTCCTAGTTGAATATCACCACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGAG-CACTCCCACAAGTGTATGCTACATGTGAGGCTGGTTGGTGGCACTGGGTGTGCACATTCATCC #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAG-GTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAACGTATCAGGGGGGCTCCTGAGAAGCATTGTAA-GTATGCGGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAG-GTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAACGTATCAGGGGGGCTCCTGAGAAGCATTG-TAAGTATGCGGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAACGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGTATGCGGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAG-GTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGG---CATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAACGTATCAGGGGGGCTCCTGAGAAGCATTGT-AAGTATGCGGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAG-GTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC---CGGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAACGTATCAGGGGGGCTCCTGAGAAGCATTGT-AAGTATGCGGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAACGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGTATGCGGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAACGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGTATGCGGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAACGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGTATGCGGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCC-ACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgatgaagtccagtaggaggtatctgccctctgccttctgcaggGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCT-GGAATATAGCCAGGATgtcaggtgattgattcggcataatgggattaaagacaggctaggggaaat Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCC-ACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgatgaagtccagtaggaggtatctgccctctgccttctgcaggGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCCACCCTGCGTCGGGACCACAACTTCTCCGTCT-TCTGGAATATAGCCAGGATgtcaggtgattgattcggcataatgggattaaagacaggctaggggaaat Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCC-ACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgatgaagtccagtaggaggtatctgccctctgccttctgcagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCcACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTG-GAATATAGCCAGGATgtcaggtgattgattcggcataatgggattaaagacaggctaggggaaat Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCAT-CCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgatgaagtccagtaggaggtatctgccctctgccttctgcagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTC-TGGAATATAGCCAGGATgtcaggtgattgattcggcataatgggattaaagacaggctaggggaaat Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCAT-CCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgatgaagtccagtaggaggtatctgccctctgccttctgcagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTC-TGGAATATAGCCAGGATgtcaggtgattgattcggcataatgggattaaagacaggctaggggaaat Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCAT-CCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGA gaagctatgatgaagtccagtaggaggtatctgccctctgccttctgcagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTGGAATATAGCCAGGATgtcaggtgattgattcggcataatgggattaaagacaggctaggggaaat Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCAT-CCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGA gaagctatgatgaagtccagtaggaggtatctgccctctgccttctgcagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTGGAATATAGCCAGGATgtcaggtgattgattcggcataatgggattaaagacaggctaggggaaat Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgatgaagtccagtaggaggtatctgccctctgccttctgcagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTGGAATATAGCCAGGATgtcaggtgattgattcggcataatgggattaaagacaggctaggggaaat #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAG-GAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGCAAGAAACTAGAGCAACTGGCTGCTCGATTTG-CCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAG-GAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGCAAGAAACTAGAGCAACTGGCTGCTCGATTT-GCCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGCAAGAAACTAGAGCAACTGGCTGCTCGATTTGCCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGA-GAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGCAAGAAACTAGAGCAACTGGCTGCTCGATTTG-CCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAG-GAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGCAAGAAACTAGAGCAACTGGCTGCTCGATTTG-CCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Exonerate_protein2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGCAAGAAACTAGAGCAACTGGCTGCTCGATTTGCCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Exonerate_coding2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGCAAGAAACTAGAGCAACTGGCTGCTCGATTTGCCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGCAAGAAACTAGAGCAACTGGCTGCTCGATTTGCCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag #### Sptbn2_ID626_21 --> 0 - 0 Original Alignment TTGTGGGTGACTGAG-CGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tagttgctgtttgtggctgtggcgctatctgcaaatcctctttcctctagTTGTGGGTGACAGAGCCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACT-GCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtcagtccaagggcaagggcacaaacagagtccaaaagagcattttaata Alignment from CESAR TTGTGGGTGACTGAG-CGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tagttgctgtttgtggctgtggcgctatctgcaaatcctctttcctctagTTGTGGGTGACAGAGCCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGG-ACTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtcagtccaagggcaagggcacaaacagagtccaaaagagcattttaata Alignment from Spaln_aa2Genome TTGTGGGTGACTGAG-CGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tagttgctgtttgtggctgtggcgctatctgcaaatcctctttcctctagTTGTGGGTGACAGAGcCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTGCCC-AGTGTCCAGCTTCTTATGAAAAAAAACCAGgtcagtccaagggcaagggcacaaacagagtccaaaagagcattttaata Alignment from Spaln_nt2Genome TTGTGGGTGACTGAGCG-GCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tagttgctgtttgtggctgtggcgctatctgcaaatcctctttcctctagTTGTGGGTGACAGAGCCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGAC-TGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtcagtccaagggcaagggcacaaacagagtccaaaagagcattttaata Alignment from Pairagon TTGTGGGTGACTGAG-CGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tagttgctgtttgtggctgtggcgctatctgcaaatcctctttcctctagTTGTGGGTGACAGAGCCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGAC-TGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtcagtccaagggcaagggcacaaacagagtccaaaagagcattttaata Alignment from Exonerate_protein2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tagttgctgtttgtggctgtggcgctatctgcaaatcctctttcctctagTTGTGGGTGACAGAGCCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtcagtccaagggcaagggcacaaacagagtccaaaagagcattttaata Alignment from Exonerate_coding2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tagttgctgtttgtggctgtggcgctatctgcaaatcctctttcctctagTTGTGGGTGACAGAGCCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtcagtccaagggcaagggcacaaacagagtccaaaagagcattttaata Alignment from GeneWise TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tagttgctgtttgtggctgtggcgctatctgcaaatcctctttcctctagTTGTGGGTGACAGAGCCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtcagtccaagggcaagggcacaaacagagtccaaaagagcattttaata #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGT-CAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ccatcccctaacctacgaactctctatatatatccctctctgaatttcagttTTGGAGGTGCTTGTATTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCCAGGCACCATTGGTGCGAAGTGCAGAATTGG-TTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtgagtactgcagtaccccagaagtgaccaaccccattactgccatattt Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGT-CAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ccatcccctaacctacgaactctctatatatatccctctctgaatttcagttTTGGAGGTGCTTGTATTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCCAGGCACCATTGGTGCGAAGTGCAGAAT-TGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtgagtactgcagtaccccagaagtgaccaaccccattactgccatattt Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ccatcccctaacctacgaactctctatatatatccctctctgaatttcagTTTTGGAGGTGCTTGTATTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCCAGGCACCATTGGTGCGAAGTGCAGAATTGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtgagtactgcagtaccccagaagtgaccaaccccattactgccatattt Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGT-CAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ccatcccctaacctacgaactctctatatatatccctctctgaatttcagTTTTGGAGGTGCTTGTATTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCCAGGCACCATTGGTGCGAAGTGCAGAA-TTGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtgagtactgcagtaccccagaagtgaccaaccccattactgccatattt Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGT-CAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ccatcccctaacctacgaactctctatatatatccctctctgaatttcagTTTTGGAGGTGCTTGTATTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCCAGGCACCATTGGTGCGAAGTGCAGAATT-GGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtgagtactgcagtaccccagaagtgaccaaccccattactgccatattt Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ccatcccctaacctacgaactctctatatatatccctctctgaatttcagTTTTGGAGGTGCTTGTATTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCCAGGCACCATTGGTGCGAAGTGCAGAATTGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtgagtactgcagtaccccagaagtgaccaaccccattactgccatattt Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ccatcccctaacctacgaactctctatatatatccctctctgaatttcagTTTTGGAGGTGCTTGTATTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCCAGGCACCATTGGTGCGAAGTGCAGAATTGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtgagtactgcagtaccccagaagtgaccaaccccattactgccatattt Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ccatcccctaacctacgaactctctatatatatccctctctgaatttcagTTTTGGAGGTGCTTGTATTTGGGAGGGATGCAGGGATGGCAGAGGCCTGGCTGTGCAGTCCAGGCACCATTGGTGCGAAGTGCAGAATTGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtgagtactgcagtaccccagaagtgaccaaccccattactgccatattt #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGG-AAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGCAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTC-CACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtaagcattgataccaaatgctaaagccggtaaatgatcctcttgtatgt Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGG-AAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGCAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTC-CACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtaagcattgataccaaatgctaaagccggtaaatgatccttgctgcctt Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGCAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctcttgtatgt Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGG-AAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGCAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCC-ACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctcttgtatgt Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGG-AAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGCAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCC-ACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctcttgtatgt Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGCAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctcttgtatgt Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGCAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctcttgtatgt Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGCAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctcttgtatgt #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAG-TCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aggaaggatacaattgatgtcatcctttcccgtgccggcccgacccacagGGCTCTGGTACAGGAGATGAGCTCCCGTGGGCCCCAGGGCGAGAGACAGACCCTGC-ACGTGGCCCTGCTCCTTCTCCCATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACaggtactgatcatgccttggctgtactgacgcctgtggcctctctggttctg Alignment from CESAR GGATCTGGCACAGGAGACGAG-TCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aggaaggatacaattgatgtcatcctttcccgtgccggcccgacccacagGGCTCTGGTACAGGAGATGAGCTCCCGTGGGCCCCAGGGCGAGAGACAGACCCTG-CACGTGGCCCTGCTCCTTCTCCCATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACaggtactgatcatgccttggctgtactgacgcctgtggcctctctggttctg Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aggaaggatacaattgatgtcatcctttcccgtgccggcccgacccacagGGCTCTGGTACAGGAGATGAGCTCCCGTGGGCCCCAGGGCGAGAGACAGACCCTGCACGTGGCCCTGCTCCTTCTCCCATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtactgatcatgccttggctgtactgacgcctgtggcctctctggttctg Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAG-TCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aggaaggatacaattgatgtcatcctttcccgtgccggcccgacccacagGGCTCTGGTACAGGAGATGAGCTCCCGTGGGCCCCAGGGCGAGAGACAGACCCTG-CACGTGGCCCTGCTCCTTCTCCCATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtactgatcatgccttggctgtactgacgcctgtggcctctctggttctg Alignment from Pairagon GGATCTGGCACAGGAGACGAG-TCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aggaaggatacaattgatgtcatcctttcccgtgccggcccgacccacagGGCTCTGGTACAGGAGATGAGCTCCCGTGGGCCCCAGGGCGAGAGACAGACCCTG-CACGTGGCCCTGCTCCTTCTCCCATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtactgatcatgccttggctgtactgacgcctgtggcctctctggttctg Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aggaaggatacaattgatgtcatcctttcccgtgccggcccgacccacagGGCTCTGGTACAGGAGATGAGCTCCCGTGGGCCCCAGGGCGAGAGACAGACCCTGCACGTGGCCCTGCTCCTTCTCCCATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtactgatcatgccttggctgtactgacgcctgtggcctctctggttctg Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aggaaggatacaattgatgtcatcctttcccgtgccggcccgacccacagGGCTCTGGTACAGGAGATGAGCTCCCGTGGGCCCCAGGGCGAGAGACAGACCCTGCACGTGGCCCTGCTCCTTCTCCCATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtactgatcatgccttggctgtactgacgcctgtggcctctctggttctg Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aggaaggatacaattgatgtcatcctttcccgtgccggcccgacccacagGGCTCTGGTACAGGAGATGAGCTCCCGTGGGCCCCAGGGCGAGAGACAGACCCTGCACGTGGCCCTGCTCCTTCTCCCATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtactgatcatgccttggctgtactgacgcctgtggcctctctggttctg #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTT-CGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactttgtggggacttctcctttgagaacgacttttctatcctttcttaggTCATGGCAGAATGTGTACTGTGTACTTCAGGTGTGGGAGCCTTGGCTTCTACAAGG-CGCCAGGGCAGCTAGTGCTGGAGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCCTTTGATTATAGGAAACGCAAACATGTTTTCAAGCTGgggtgagttttacaagctggattaagcacccgggctcttcttgggttggggg Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTT-CGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactttgtggggacttctcctttgagaacgacttttctatcctttcttaggTCATGGCAGAATGTGTACTGTGTACTTCAGGTGTGGGAGCCTTGGCTTCTACAAG-GCGCCAGGGCAGCTAGTGCTGGAGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCCTTTGATTATAGGAAACGCAAACATGTTTTCAAGCTGgggtgagttttacaagctggattaagcacccgggctcttcttgggttggggg Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtggggacttctcctttgagaacgacttttctatcctttcttagGTCATGGCAGAATGTGTACTGTGTACTTCAGGTGTGGGAGCCTTGGCTTCTACAAGGCGCCAGGGCAGCTAGTGCTGGAGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCCTTTGATTATAGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttacaagctggattaagcacccgggctcttcttgggttggggg Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTC-GGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtggggacttctcctttgagaacgacttttctatcctttcttagGTCATGGCAGAATGTGTACTGTGTACTTCAGGTGTGGGAGCCTTGGCTTCTACAAGG-CGCCAGGGCAGCTAGTGCTGGAGTGCCATA------TGAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCCTTTGATTATAGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttacaagctggattaagcacccgggctcttcttgggttggggg Alignment from Pairagon GTCATGGCAGAATGTGTACTGTGTACTTC-GGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtggggacttctcctttgagaacgacttttctatcctttcttagGTCATGGCAGAATGTGTACTGTGTACTTCAGGTGTGGGAGCCTTGGCTTCTACAAGG-CGCCAGGGCAGCTAGTGCTGGAGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCCTTTGATTATAGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttacaagctggattaagcacccgggctcttcttgggttggggg Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtggggacttctcctttgagaacgacttttctatcctttcttagGTCATGGCAGAATGTGTACTGTGTACTTCAGGTGTGGGAGCCTTGGCTTCTACAAGGCGCCAGGGCAGCTAGTGCTGGAGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCCTTTGATTATAGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttacaagctggattaagcacccgggctcttcttgggttggggg Alignment from Exonerate_coding2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtggggacttctcctttgagaacgacttttctatcctttcttagGTCATGGCAGAATGTGTACTGTGTACTTCAGGTGTGGGAGCCTTGGCTTCTACAAGGCGCCAGGGCAGCTAGTGCTGGAGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCCTTTGATTATAGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttacaagctggattaagcacccgggctcttcttgggttggggg Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtggggacttctcctttgagaacgacttttctatcctttcttagGTCATGGCAGAATGTGTACTGTGTACTTCAGGTGTGGGAGCCTTGGCTTCTACAAGGCGCCAGGGCAGCTAGTGCTGGAGTGCCATAT------GAAGTGCCTGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCCTTTGATTATAGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttacaagctggattaagcacccgggctcttcttgggttggggg #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCC-ACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagaGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCACACAGTACTAGCCTATGCCATGAAACAGTATGGCT-GGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCaggtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCC-ACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagaGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCACACAGTACTAGCCTATGCCATGAAACAGTATGGCT-GGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCaggtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCACACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGC-CACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCACACAGTACTAGCCTATGCCATGAAACAGTATGGCTGG-ACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGC-CACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCACACAGTACTAGCCTATGCCATGAAACAGTATGGCT-GGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCC-ACGGTACTAGCCTATGCCATGAAACAGTATGGCTGG--GACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCACACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGACCCA---GAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGC---CACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCT--GCACACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGACCCA-GAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGCCGATCAGCTGCACACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTG-CTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCC-ACACCTCTACTTGgtgagttgtcctttacacaaacctctctcttttgtagGGCTCTGAATGGA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTG-CTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCCTCATGGCCCAGCAAGATCGGACATCTCGCATCT-TCCACACCTCTACTTGgtgagttgtcctttactgaattttctttccactgcagGGCTCTGAATGGA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCACACCTCTACTTGgtgagttgtcctttacacaaacctctctcttttgtagGGCTCTGAATGGA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGC-TCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCCTCATGGCCCAGCAAGATCGGACATCTCGCATCTT-CCACACCTCTACTTGgtgagttgtcctttacacaaacctctctcttttgtagGGCTCTGAATGGA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGC-TGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCCTCATGGCCCAGCAAGATCGGACATCTCGCATCTT-CCACACCTCTACTTGgtgagttgtcctttacacaaacctctctcttttgtagGGCTCTGAATGGA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCACACCTCTACTTGgtgagttgtcctttacacaaacctctctcttttgtagGGCTCTGAATGGA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCACACCTCTACTTGgtgagttgtcctttacacaaacctctctcttttgtagGGCTCTGAATGGA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCACACCTCTACTTGgtgagttgtcctttacacaaacctctctcttttgtagGGCTCTGAATGGA #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAG-CAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaaggGCCTCAGAGCAGGAAAAGATGGAGCCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAG-TACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAG-CAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaaggGCCTCAGAGCAGGAAAAGATGGAGCCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTA-GTACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGTACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAG-CAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAG-TACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAG-CAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAG-TACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGTACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGTACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGTACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGC-AGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCCAGTGCTCTTGCATGGGCTACTTACTACC-GGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGAcagtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGC-AGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCCAGTGCTCTTGCATGGGCTACTTACTACCGG-CGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGAcagtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCCAGTGCTCTTGCATGGGCTACTTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGG-CAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCCAGTGCTCTTGCATGGGCTACTTACTACC-GGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGG-CAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCCAGTGCTCTTGCATGGGCTACTTACTACC-GGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCCAGTGCTCTTGCATGGGCTACTTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCCAGTGCTCTTGCATGGGCTACTTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCCAGTGCTCTTGCATGGGCTACTTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ggcaactaatagcctggtattgggttctagcatctctctcttccctacagaGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCT-TATCCAGACCATGtggtaactgctgcacagctataaggcttgccagcacacttagttggcagcct Alignment from CESAR gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ggcaactaatagcctggtattgggttctagcatctctctcttccctacagaGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTC-TTATCCAGACCATGtggtaactgctgcacagctataaggcttgccagcacacttagttggcagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ggcaactaatagcctggtattgggttctagcatctctctcttccctacagAGGCTTAAGTGTGcACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTT-ATCCAGACCATGTGgtaactgctgcacagctataaggcttgccagcacacttagttggcagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ggcaactaatagcctggtattgggttctagcatctctctcttccctacagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCT-TATCCAGACCATGTGgtaactgctgcacagctataaggcttgccagcacacttagttggcagcct Alignment from Pairagon GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ggcaactaatagcctggtattgggttctagcatctctctcttccctacagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCT-TATCCAGACCATGTGgtaactgctgcacagctataaggcttgccagcacacttagttggcagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTC--TCTATCCAGACCATGTG ggcaactaatagcctggtattgggttctagcatctctctcttccctacagAGGCTTAAGTGTGCACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTT---ATCCAGACCATGTGgtaactgctgcacagctataaggcttgccagcacacttagttggcagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGAC---ATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ggcaactaatagcctggtattgggttctagcatctctctcttccctacagAGGCTTAAGTGTG--CACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTT-ATCCAGACCATGTGgtaactgctgcacagctataaggcttgccagcacacttagttggcagcct Alignment from GeneWise ggcaactaatagcctggtattgggttctagcatctctctcttccctacagaggcttaagtgtgcacatctggtggtcaaagccgaatcttcaagcctgtcttatccagaccatgtggtaactgctgcacagctataaggcttgccagcacacttagttggcagcct #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagacAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCA-GCAC------CAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagacAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCC-------AGCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTcCTGGAAGCCATGAAGGACTATACAAAAGCCAG-------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCA-------GCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCT-CTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCA-------GCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCAG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCAG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCCTGGAAGCCATGAAGGACTATACAAAAGCCAG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGACAGT-CAGTGAACTTACCCTTATGGCTaggtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from CESAR AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGACAG-TCAGTGAACTTACCCTTATGGCTaggtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Spaln_aa2Genome AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAcAGCAAACCAGCTCTGCATGCAGCCCGACAGTC-AGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Spaln_nt2Genome AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGACAGT-CAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Pairagon AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGACAGT-CAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGACAGTCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGACAGTCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGACAGTCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAA-CAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCCAGTTATCCAGGGCACCAGTGTCTGCCCTGC-TCTAGCCCCCAACAACCTTggtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAA-CAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCCAGTTATCCAGGGCACCAGTGTCTGCCC-TGCTCTAGCCCCCAACAACCTTggtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCCAGTTATCCAGGGCACCAGTGTCTGCCCTGCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAAC-AGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCCAGTTATCCAGGGCACCAGTGTCTGCCCTGC-TCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGG-AACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCCAGTTATCCAGGGCACCAGTGTCTGCCCTG-CTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCCAGTTATCCAGGGCACCAGTGTCTGCCCTGCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCCAGTTATCCAGGGCACCAGTGTCTGCCCTGCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCCAGTTATCCAGGGCACCAGTGTCTGCCCTGCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTG-GGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGCGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGG-AGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTG-GGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGCGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGG-GAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTG-GGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGcGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGA-GCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTG-GGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGCGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGG-AGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTG-GGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGCGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGG-AGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTG-GGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGA caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGCGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGAGCAGAGATggaggtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGG-CAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGCGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGA-GCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGCGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGACGACTCAAGTCCCCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTT-CCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttg Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGACGACTCAAGTCCCCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAAT-GTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggacctct Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGACGACTCAAGTCCCCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttg Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGACGACTCAAGTCCCCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTC-CAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttg Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGACGACTCAAGTCCCCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATG-TTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttg Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGACGACTCAAGTCCCCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttg Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGACGACTCAAGTCCCCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttg Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGACGACTCAAGTCCCCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttg #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACC-ATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCTG-GGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACC-ATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCT-GGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCTGGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACC-ATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCTG-GGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTA-CCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCTG-GGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCTGGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCTGGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCTGGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccaggcTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACA-ATTCCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtaactcgggccttgtctttgtcactcccatgttccccttcatctgtttg Alignment from CESAR gcTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccaggcTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCAC-AATTCCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtaactcgggccttgtctttgtcactcccatgttccccttctgcttctgt Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGcCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACAA-TTCCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttcatctgtttg Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGC-TGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACA-ATTCCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttcatctgtttg Alignment from Pairagon GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACA-ATTCCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttcatctgtttg Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCAC--ACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACAA---TTCCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttcatctgtttg Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTG---CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCCTGTATAT--GGCCTTCATGACCATCATGATCAAGGTGCACAA-TTCCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttcatctgtttg Alignment from GeneWise CATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccaggcttcatcaagGTGC------TGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACAA-TTCCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttcatctgtttg #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAG-AGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaatggggacctactgacctgtgtctcactctctccccagcTGCTTGCACTCCTGGTTCCGGCAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGG-ATCATTGCCAGCCCAGTTACCACCGCCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATtgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAG-AGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaatggggacctactgacctgtgtctcactctctccccagcTGCTTGCACTCCTGGTTCCGGCAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGG-GATCATTGCCAGCCCAGTTACCACCGCCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATtgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGCAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGATCATTGCCAGCCCAGTTACCACCGCCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAG-AGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGCAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGG-ATCATTGCCAGCCCAGTTACCACCGCCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAG-AGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGCAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGG-ATCATTGCCAGCCCAGTTACCACCGCCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAG-AGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGG--GCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGCAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGA---TCATTGCCAGCCCAGTTACCACCGCCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTC---CAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGCAG--ACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGA-TCATTGCCAGCCCAGTTACCACCGCCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGCAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGATCATTGCCAGCCCAGTTACCACCGCCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTC-CCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCC-ACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAggtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTC-CCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTG-TCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAggtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCC-CACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGT-CCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTT-CCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGT-CCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGC-GCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcgatcccggaaggccaaggttgggattctctttatctatcgttacaggCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTCGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAG-ATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGC-GCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcgatcccggaaggccaaggttgggattctctttatctatcgttacaggCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTCGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGA-GATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTCGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAG-CGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTCGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAG-ATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAG-CGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTCGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGA-TCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTCGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTCGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTCGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTC-CTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tccactttagtctgatcagataaattgagtagatgtttaatattccttagGGCCCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTC-TTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACCGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAggtgagtcattgcaggtccatatagtagagaagtcacaacaaacgcaaata Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTC-CTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tccactttagtctgatcagataaattgagtagatgtttaatattccttagGGCCCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTC-TTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACCGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAggtgagtcattgcaggtccatatagtagagaagtcacaacaaacgcaaata Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaattgagtagatgtttaatattccttagGGCCCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACCGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgcaggtccatatagtagagaagtcacaacaaacgcaaata Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATT-CCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaattgagtagatgtttaatattccttagGGCCCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTC-TTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACCGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgcaggtccatatagtagagaagtcacaacaaacgcaaata Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATT-CCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaattgagtagatgtttaatattccttagGGCCCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTC-TTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACCGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgcaggtccatatagtagagaagtcacaacaaacgcaaata Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaattgagtagatgtttaatattccttagGGCCCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACCGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgcaggtccatatagtagagaagtcacaacaaacgcaaata Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaattgagtagatgtttaatattccttagGGCCCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACCGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgcaggtccatatagtagagaagtcacaacaaacgcaaata Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaattgagtagatgtttaatattccttagGGCCCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACCGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgcaggtccatatagtagagaagtcacaacaaacgcaaata #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTG-CAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccataggCAGCAGGGGCTACTGCCAGGTTATGAAAGCTTACAACCTATACC-GCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from CESAR gCAGCAGGGGCTGCTG-CAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccataggCAGCAGGGGCTACTGCCAGGTTATGAAAGCTTACAACCTATACC-GCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Spaln_aa2Genome GCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccataggcagCAGGGGCTACTGCCAGGTTATGAAAGCTTACAACCTATACCG-CCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGC-AGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATA------CTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCCAGGTTATGAAAGCTTACAACCTATACC-GCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Pairagon GCAGCAGGGGCTGCTG-CAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCCAGGTTATGAAAGCTTACAACCTATACC-GCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Exonerate_protein2genome GGCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGA-----TACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCCAGGTTATGAAAGCTTACAACCTATACCGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Exonerate_coding2genome GGCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGA-----TACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCCAGGTTATGAAAGCTTACAACCTATACCGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from GeneWise -CAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCCAGGTTATGAAAGCTTACAACCTATACCGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment GAGCTGGCAGCAGCCCCCGGGGAC-CCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCGAC-GTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATgggtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from CESAR GAGCTGGCAGCAGCCCCCGGGGACCCG-CAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCGA-CGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATgggtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Spaln_aa2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCGACGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Spaln_nt2Genome GAGCTGGCAGCAGCCCCCGGGGACCC-GCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCGAC-GTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Pairagon GAGCTGGCAGCAGCCCCCGGGGA-CCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCGAC-GTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Exonerate_protein2genome GAGCTGGCAGCAGCCCCCGGGGAC-CCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGT--CAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCGACG---TTTCCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Exonerate_coding2genome GAGCTGGCAGCAGCCCCCGGGGAC-CCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGT--CAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCGACG---TTTCCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from GeneWise GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCGACGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCC-TCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcatgagagcagaggaacccctgagacatctcttcatttcccatagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTG-GGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaagctaggaggcgcccttcaagacttactgagagcacctcactg Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcatgagagcagaggaacccctgagacatctcttcatttcccatagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTG-GGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaagctaggaggcgcccttcaagacttactgagagcacctcactg Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcatgagagcagaggaacccctgagacatctcttcatttcccatagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaagctaggaggcgcccttcaagacttactgagagcacctcactg Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCAT-CCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcatgagagcagaggaacccctgagacatctcttcatttcccatagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGT-GGGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaagctaggaggcgcccttcaagacttactgagagcacctcactg Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCA-TCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcatgagagcagaggaacccctgagacatctcttcatttcccatagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGT-GGGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaagctaggaggcgcccttcaagacttactgagagcacctcactg Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGG--GCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcatgagagcagaggaacccctgagacatctcttcatttcccatagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGCC---CGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaagctaggaggcgcccttcaagacttactgagagcacctcactg Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGG--GCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcatgagagcagaggaacccctgagacatctcttcatttcccatagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGCC---CGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaagctaggaggcgcccttcaagacttactgagagcacctcactg Alignment from GeneWise GGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcatgagagcagaggaacccctgagacatctcttcatttcccataggtaaagatacagtgccgcaagGGCATTCCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGCC-CGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaagctaggaggcgcccttcaagacttactgagagcacctcactg #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCT-GATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacaggttatttcaggaggcagcctgtattttctctttgatgcagGATGAGGACACAGATAAGCTACTTGCCTCCCCTCGATGCATCAACCTTGGAGAACAGCTGGAGCC-CGATGAGGAGGAGGCTGGGAGCCCAGGGGAGGAAGAAACTGAAgtaagcagaactatagcttgttgaggaaggcctgccaggtcagattattg Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCT-GATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacaggttatttcaggaggcagcctgtattttctctttgatgcagGATGAGGACACAGATAAGCTACTTGCCTCCCCTCGATGCATCAACCTTGGAGAACAGCTGGA-GCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAGGAAGAAACTGAAgtaagcagaactatagcttgttgaggaaggcctgccaggtcagattattg Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacaggttatttcaggaggcagcctgtattttctctttgatgcagGATGAGGACACAGATAAGCTACTTGCCTCCCCTCGATGCATCAACCTTGGAGAACAGCTGGAGCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAGGAAGAAACTGAAgtaagcagaactatagcttgttgaggaaggcctgccaggtcagattattg Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCT-GATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacaggttatttcaggaggcagcctgtattttctctttgatgcagGATGAGGACACAGATAAGCTACTTGCCTCCCCTCGATGCATCAACCTTGGAGAACAGCTGGAG-CCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAGGAAGAAACTGAAgtaagcagaactatagcttgttgaggaaggcctgccaggtcagattattg Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCT-GATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacaggttatttcaggaggcagcctgtattttctctttgatgcagGATGAGGACACAGATAAGCTACTTGCCTCCCCTCGATGCATCAACCTTGGAGAACAGCTGGAGCCC-GATGAGGAGGAGGCTGGGAGCCCAGGGGAGGAAGAAACTGAAgtaagcagaactatagcttgttgaggaaggcctgccaggtcagattattg Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacaggttatttcaggaggcagcctgtattttctctttgatgcagGATGAGGACACAGATAAGCTACTTGCCTCCCCTCGATGCATCAACCTTGGAGAACAGCTGGAGCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAGGAAGAAACTGAAgtaagcagaactatagcttgttgaggaaggcctgccaggtcagattattg Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacaggttatttcaggaggcagcctgtattttctctttgatgcagGATGAGGACACAGATAAGCTACTTGCCTCCCCTCGATGCATCAACCTTGGAGAACAGCTGGAGCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAGGAAGAAACTGAAgtaagcagaactatagcttgttgaggaaggcctgccaggtcagattattg Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacaggttatttcaggaggcagcctgtattttctctttgatgcagGATGAGGACACAGATAAGCTACTTGCCTCCCCTCGATGCATCAACCTTGGAGAACAGCTGGAGCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAGGAAGAAACTGAAgtaagcagaactatagcttgttgaggaaggcctgccaggtcagattattg #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGC-ACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAA-AAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGC-ACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCCACACCCTTGTACCTCCTACGCGAGCACCGACACA-GAAAAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGC-ACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCcACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAAAACA------------CCCAAAGAAGAGCAGgccaacaggtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGG-CACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAA-AAACACCCAAAGAAG---AGCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGG-CACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAA-AAACACCCAAAGAAG---AGCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGC-ACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCA catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAAAACACCCAAAGAAGAGCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGC-ACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCA catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAAAACACCCAAAGAAGAGCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAAAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATC-CTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCC------CATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACC-CACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCC--CATT---ATTCACTTCATCAATATGTTCCTCTTCTCCCAAA-ACCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCC-----ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCC-ACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCC-----CATTATTCACTTCATCAATATGTTCCTCTTCTCCC-AAAACCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCC-----CATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAA-CCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCCATTATTCACTTCATCAATATGTTCCTCTTCTC------CCAAAACCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCCAT-----TATTCACTTCATCAATATGTTCCTCTTCTCCCAAAA-CCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCCATTATTCACTTCATCAATATGTTCCTCTTCTC------CCAAAACCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTG-GGTTTTCCTCAGCATCTTCAATCATgtgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTG-GGTTTTCCTCAGCATCTTCAATCATgtgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGcATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGG-GTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCATCCTAGGGGTCACACACATGGCC-TTTGGGTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCATCCTAGGGGTCACACACATGGCCTTT-GGGTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGG--GTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGTT---TTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGAT---GTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG--CATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGG-GTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGG ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGgttttcctcagcatcttcaatcatgtgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAG-ATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagcgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGCATCCACAAGATGAAGGCCGTCTACCTAACCCTCA-TCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAG-ATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaagtgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGCATCCACAAGATGAAGGCCGTCTACCTAACCCTC-ATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagcgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGCATCCACAAGATGAAGGCCGTCTACCTAACCCTCATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAG-ATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagcgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGCATCCACAAGATGAAGGCCGTCTACCTAACCCTCATCCA-TGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAG-ATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagcgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGCATCCACAAGATGAAGGCCGTCTACCTAACCCTCATCCA-TGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagcgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGCATCCACAAGATGAAGGCCGTCTACCTAACCCTCATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagcgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGCATCCACAAGATGAAGGCCGTCTACCTAACCCTCATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagcgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGCATCCACAAGATGAAGGCCGTCTACCTAACCCTCATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTG-GAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT ccgttatcctcagcttccacacaaggtctaataacatcttttcatcacagcTTTCATTGCCATGTCTTCTCATATCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTCAC-GCAGTTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtaagtgcccatgtaaactgaagtcctttcttccttcccacccagGTCTT Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTG-GAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT ccgttatcctcagcttccacacaaggtctaataacatcttttcatcacagcTTTCATTGCCATGTCTTCTCATATCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTCA-CGCAGTTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtaagtgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTT Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT ccgttatcctcagcttccacacaaggtctaataacatcttttcatcacagCTTTCATTGCCATGTCTTCTCATATCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTCACGCAGTTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtaagtgcccatgtaaactgaagtcctttcttccttcccacccagGTCTT Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTG-GAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT ccgttatcctcagcttccacacaaggtctaataacatcttttcatcacagCTTTCATTGCCATGTCTTCTCATATCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTCAC-GCAGTTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtaagtgcccatgtaaactgaagtcctttcttccttcccacccagGTCTT Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTG-GAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT ccgttatcctcagcttccacacaaggtctaataacatcttttcatcacagCTTTCATTGCCATGTCTTCTCATATCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTCAC-GCAGTTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtaagtgcccatgtaaactgaagtcctttcttccttcccacccagGTCTT Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT ccgttatcctcagcttccacacaaggtctaataacatcttttcatcacagCTTTCATTGCCATGTCTTCTCATATCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTCACGCAGTTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtaagtgcccatgtaaactgaagtcctttcttccttcccacccagGTCTT Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT ccgttatcctcagcttccacacaaggtctaataacatcttttcatcacagCTTTCATTGCCATGTCTTCTCATATCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTCACGCAGTTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtaagtgcccatgtaaactgaagtcctttcttccttcccacccagGTCTT Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT ccgttatcctcagcttccacacaaggtctaataacatcttttcatcacagCTTTCATTGCCATGTCTTCTCATATCTGCGAGCAGGAGGAAGCCCGGTTCAGGACCTCACGCAGTTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtaagtgcccatgtaaactgaagtcctttcttccttcccacccagGTCTT #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCC-TACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagtTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCC-TGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagacttacaattatctctttaaacagGGTGAGCCT Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCC-TACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagtTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGC-CTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCT Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGcCCCTACAAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCT-GGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagacttacaattatctctttaaacagGGTGAGCCT Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCC-TGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagacttacaattatctctttaaacagGGTGAGCCT Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGAC-----------------------------------------GGGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCC-TGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAGTAAGTTTAAATGGAAGACTTACAATTATCTCTTTAAACAGGGTGAGCCT Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGC--CGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCT---GGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagacttacaattatctctttaaacagGGTGAGCCT Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAG-CCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGC--CGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCT---GGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagacttacaattatctctttaaacagGGTGAGCCT Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagacttacaattatctctttaaacagGGTGAGCCT #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAACGGCCCTTTCTCAGAGACAACACCCCTGCTTCCAGGCACCC-GGGGCCACATTCTGACCTGAAAGTCaagtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from CESAR GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAACGGCCCTTTCTCAGAGACAACACCCCTGCTTCCAGGCACCC-GGGGCCACATTCTGACCTGAAAGTCaagtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAcGGCCCTTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGG-CCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTT-CTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAACGGCCCTTTCTCAGAGACAACACCCCTGCTTCCAGGCACCC-GGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Pairagon GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAACGGCCCTTTCTCAGAGACAACACCCCTGCTTCCAGGCACCC-GGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAACGGCCCTTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGCCACATTCTGACCTGAAAGTCAAGtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAACGGCCCTTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGCCACATTCTGACCTGAAAGTCAAGtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAACGGCCCTTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTT-CGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagccTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGC-ACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTT-CGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagccTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAG-CACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCG-TGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGC-ACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTT-CGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGC-ACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCG---TGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTT--CCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCA-CGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGC-GCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTCGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCACT-TGAGGAACTGGAAAAGACATTTagtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from CESAR CTCAACGAATCCGTGAGC-GCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTCGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCAC-TTGAGGAACTGGAAAAGACATTTagtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGC-GCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTcGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCACTT-GAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAG-CGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTCGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCACT-TGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Pairagon CTCAACGAATCCGTGAG-CGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTCGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCACT-TGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTCGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCACTTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTCGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCACTTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTCGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCACTTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCACAGTTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAG-TGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAggtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCACAGTTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAG-TGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAggtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCACAGTTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCACAGTTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAG-TGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCACAGTTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGT-GTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCACAGTTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCACAGTTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCACAGTTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACT-GGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTCGGAGAGTGGCTTGCAGTGGGGATGGAGA-CAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACT-GGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTCGGAGAGTGGCTTGCAGTGGGGATGG-AGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTCGGAGAGTGGCTTGCAGTGGGGATGGAGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACT-GGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTCGGAGAGTGGCTTGCAGTGGGGATGGAG-ACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACT-GGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTCGGAGAGTGGCTTGCAGTGGGGATGGAG-ACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTCGGAGAGTGGCTTGCAGTGGGGATGGAGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTCGGAGAGTGGCTTGCAGTGGGGATGGAGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTCGGAGAGTGGCTTGCAGTGGGGATGGAGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACC-CCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaacattttcttggctttgtccatctactgtagcgTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGA-CAGCCCTGGAGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttataattgttttagaatgcacagtacttcattt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCC-TTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaacattttcttggctttgtccatctactgtagcgTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGA-CAGCCCTGGAGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttataattgttttagaatgcacagtacttcattt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACC-CCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaacattttcttggctttgtccatctactgtagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTcCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGAC-AGCCCTGGAGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttataattgttttagaatgcacagtacttcattt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACC-CCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaacattttcttggctttgtccatctactgtagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGA-CAGCCCTGGAGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttataattgttttagaatgcacagtacttcattt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCC-TTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaacattttcttggctttgtccatctactgtagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGA-CAGCCCTGGAGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttataattgttttagaatgcacagtacttcattt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACC-CCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACC--AGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaacattttcttggctttgtccatctactgtagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACAGC---CCTGGAGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttataattgttttagaatgcacagtacttcattt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACC-CCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACC--AGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaacattttcttggctttgtccatctactgtagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACAGC---CCTGGAGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttataattgttttagaatgcacagtacttcattt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaacattttcttggctttgtccatctactgtagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACAGC-CCTGGAGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttataattgttttagaatgcacagtacttcattt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttataggtCTAGACACCATCCCCACTGCCACAGGAAGACATCTGCTGGTGTCTGGGTGGTGGCGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCA-GGCTCTGGCTTGGTCTTTGCCCTGTggtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttataggtCTAGACACCATCCCCACTGCCACAGGAAGACATCTGCTGGTGTCTGGGTGGTGGCGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATC-AGGCTCTGGCTTGGTCTTTGCCCTGTggtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACATCTGCTGGTGTCTGGGTGGTGGcGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCAG-GCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACATCTGCTGGTGTCTGGGTGGTGGCGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCA-GGCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACATCTGCTGGTGTCTGGGTGGTGGCGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCA-GGCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATC--ATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACATCTGCTGGTGTCTGGGTGGTGGCGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCAG---GCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATC--ATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACATCTGCTGGTGTCTGGGTGGTGGCGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCAG---GCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACATCTGCTGGTGTCTGGGTGGTGGCGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCAG-GCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTCCGAGGGGCC-AACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagttATTGGTTATTATATCTTCCGAGGGGCCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCCG-GCCCAGTGTGGCTggtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGGGCC-AACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagttATTGGTTATTATATCTTCCGAGGGGCCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCC-GGCCCAGTGTGGCTggtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGAGGGGCC-AACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGC---GTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCcAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCCGGCCCAGTGTGGCTGGTAAgttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGA-GGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCCG-GCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGGG-CCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCCG-GCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCCGGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCCGGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCCGGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTG-GGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacaggtTTCCAGGCTGTGGTGCTATCAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGCGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCT-GGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAggtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTG-GGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacaggtTTCCAGGCTGTGGTGCTATCAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGCGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGC-CCTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAggtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGCGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGG-GGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGCGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCC-TGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTG-GGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGCGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCC-TGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGCGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGCGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGATGGGGCTGGGTGTGTCAGTGCGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGC-CTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCTACCAGCCTATCTGCCTGGGC-GGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGC-CTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCTACCAGCCTATCTGCCTGGG-CGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCTACCAGCCTATCTGCCTGGGCGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCG-CCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCTACCAGCCTATCTGCCT-GGGCGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCG-CCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCTACCAGCCTATCTGCCTGGGC-GGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCTACCAGCCTATCTGCCTGGGCGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCTACCAGCCTATCTGCCTGGGCGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCTACCAGCCTATCTGCCTGGGCGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagcTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTG-GCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from CESAR cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagcTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCT-GGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Spaln_nt2Genome CTGCTCTGAAGCCC-AGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTG-GCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Pairagon CTGCTCTGAAG-CCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTG-GCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCC-CCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCT-GGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCC-CCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCA-TCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCC-TTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATC-TGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCC-CTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATC-TGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAGA ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATAGATTCCCACAGGCAAgtgcccatgagaaatactcgggaaagattatcaacataactcagaa #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGA-AGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGACAGGACACGCATTCACCTGGCTTCAGGAT-GCCA---GACCCTGGTGTTATCAGTggtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGA-AGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGACAGGACACGCATTCACCTGGCTTCAG-GATGCCA---GACCCTGGTGTTATCAGTggtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGACAGGACACGCATTCACCTGGCTTCAGGATGCCA---GACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGA-AGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGACAGGACACGCATTCACCTGGCTTCAGGA-TGCC---AGACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGA-AGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGACAGGACACGCATTCACCTGGCTTCAGGATGCC----AGACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGACAGGACACGCATTCACCTGGCTTCAGGATGCCA---GACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGACAGGACACGCATTCACCTGGCTTCAGGATGCCA---GACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGACAGGACACGCATTCACCTGGCTTCAGGATGCCA---GACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCA-AATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgcagACCAACGCCCGACTAACTGGACAATCGGCGCTTCTCCCAGGTTTTGTCGGCACTGG-GGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from CESAR ACCAACGCCAGACTCACTGCA-AATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgcagACCAACGCCCGACTAACTGGACAATCGGCGCTTCTCCCAGGTTTTGTCGGCACTGG-GGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGACAATCGGCGCTTCTCCCAGGTTTTGTCGGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACTGCA-AATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGACAATCGGCGCTTCTCCCAGGTTTTGTCGGCACT-GGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Pairagon CAGACCAACGCCAGACTCACTGCA-AATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGACAATCGGCGCTTCTCCCAGGTTTTGTCGGCACT-GGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGACAATCGGCGCTTCTCCCAGGTTTTGTCGGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGACAATCGGCGCTTCTCCCAGGTTTTGTCGGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGACAATCGGCGCTTCTCCCAGGTTTTGTCGGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCC-TTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg tggtcttgtaaatagttactttccaactctcttactgtctgcctcctcaggaGGTGGCCCCCTCCTCAATAACTATGCCCTTAACCTTGTTGGTCATCTACTTGCTTCAGACCAGAGACC-TCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAggtagggcagaatggcctctacaatcatgatcacagcttcatcttatccct Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCC-TTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg tggtcttgtaaatagttactttccaactctcttactgtctgcctcctcaggaGGTGGCCCCCTCCTCAATAACTATGCCCTTAACCTTGTTGGTCATCTACTTGCTTCAGACCAGAG-ACCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAggtagggcagaatggcctctacaatcatgatcacagcttcatcttatccct Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagttactttccaactctcttactgtctgcctcctcagGAGGTGGCCCCCTCCTCAATAACTATGCCCTTAACCTTGTTGGTCATCTACTTGCTTCAGACCAGAGACCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtagggcagaatggcctctacaatcatgatcacagcttcatcttatccct Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCC-TTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagttactttccaactctcttactgtctgcctcctcagGAGGTGGCCCCCTCCTCAATAACTATGCCCTTAACCTTGTTGGTCATCTACTTGCTTCAGACCAGAGA-CCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtagggcagaatggcctctacaatcatgatcacagcttcatcttatccct Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACG-CCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagttactttccaactctcttactgtctgcctcctcagGAGGTGGCCCCCTCCTCAATAACTATGCCCTTAACCTTGTTGGTCATCTACTTGCTTCAGACCAGAGA-CCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtagggcagaatggcctctacaatcatgatcacagcttcatcttatccct Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagttactttccaactctcttactgtctgcctcctcagGAGGTGGCCCCCTCCTCAATAACTATGCCCTTAACCTTGTTGGTCATCTACTTGCTTCAGACCAGAGACCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtagggcagaatggcctctacaatcatgatcacagcttcatcttatccct Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagttactttccaactctcttactgtctgcctcctcagGAGGTGGCCCCCTCCTCAATAACTATGCCCTTAACCTTGTTGGTCATCTACTTGCTTCAGACCAGAGACCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtagggcagaatggcctctacaatcatgatcacagcttcatcttatccct Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagttactttccaactctcttactgtctgcctcctcagGAGGTGGCCCCCTCCTCAATAACTATGCCCTTAACCTTGTTGGTCATCTACTTGCTTCAGACCAGAGACCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtagggcagaatggcctctacaatcatgatcacagcttcatcttatccct #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGT-TCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctatctgtttctcccaacatctaggATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGAGCAAGGACCTCAACAACGCCCACCACGAGGACCCCCACACGCCCTTTCTCCTGGTTTTCCAGG-CAACTTTTATAGCTTCTTTCATgtaagggtgctacaggaagccttgtgggggatgggagggggatatagtct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGT-TCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctatctgtttctcccaacatctaggATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGAGCAAGGACCTCAACAACGCCCACCACGAGGACCCCCACACGCCCTTTCTCCTGGTTTTCCAGGCA-ACTTTTATAGCTTCTTTCATgtaagggtgctacaggaagccttgtgggggatgggagggggatatagtct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCC-CACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctatctgtttctcccaacatctagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGAGCAAGGACCTCAACAACGCCCACCACGAGGACCCcCACACGCCCTTTCTCCTGGTTTTCCAGGCAAC-TTTTATAGCTTCTTTCATgtaagggtgctacaggaagccttgtgggggatgggagggggatatagtct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCC-ACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctatctgtttctcccaacatctagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGAGCAAGGACCTCAACAACGCCCACCACGAGGACCCCCACACGCCCTTTCTCCTGGTTTTCCAGG-CAACTTTTATAGCTTCTTTCATgtaagggtgctacaggaagccttgtgggggatgggagggggatatagtct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGG-TTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctatctgtttctcccaacatctagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGAGCAAGGACCTCAACAACGCCCACCACGAGGACCCCCACACGCCCTTTCTCCTGGTTTTCCAGGCAA-CTTTTATAGCTTCTTTCATgtaagggtgctacaggaagccttgtgggggatgggagggggatatagtct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctatctgtttctcccaacatctagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGAGCAAGGACCTCAACAACGCCCACCACGAGGACCCCCACACGCCCTTTCTCCTGGTTTTCCAGGCAACTTTTATAGCTTCTTTCATgtaagggtgctacaggaagccttgtgggggatgggagggggatatagtct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctatctgtttctcccaacatctagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGAGCAAGGACCTCAACAACGCCCACCACGAGGACCCCCACACGCCCTTTCTCCTGGTTTTCCAGGCAACTTTTATAGCTTCTTTCATgtaagggtgctacaggaagccttgtgggggatgggagggggatatagtct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctatctgtttctcccaacatctagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGAGCAAGGACCTCAACAACGCCCACCACGAGGACCCCCACACGCCCTTTCTCCTGGTTTTCCAGGCAACTTTTATAGCTTCTTTCATgtaagggtgctacaggaagccttgtgggggatgggagggggatatagtct #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAG-CTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCCTGCCGATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from CESAR TTGAGCTTCGCGTGTGCCCAG-CTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCCTGCCGATGATTTACTTCCTCAACAACTAT-CGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAG-CTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGcCTGCCGATGATTTACTTCCTCAACAACTATCG-TATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGC-TGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCCTGCCGATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAG-CTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCCTGCCGATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCCTGCCGATGATTTACTTCCTCAACAACTATCGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCCTGCCGATGATTTACTTCCTCAACAACTATCGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCCTGCCGATGATTTACTTCCTCAACAACTATCGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat #### Unc93b1_ID217_8 --> 0 - 0 Original Alignment GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGAC-TTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagacctgttttttgtatttcttccagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACACGACCTTTTGCTTACGGCACCTGGTGCCATTCT-TATCTACAGTGGATTCGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacctccagcttaca Alignment from CESAR GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGAC-TTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagacctgttttttgtatttcttccagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACACGACCTTTTGCTTACGGCACCTGGTGCCAT-TCTTATCTACAGTGGATTCGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacctccagcttaca Alignment from Spaln_aa2Genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagacctgttttttgtatttcttccagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACACGACCTTTTGCTTACGGCACCTGGTGCCATTCTTATCTACAGTGGATTCGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacctccagcttaca Alignment from Spaln_nt2Genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGAC-TTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagacctgttttttgtatttcttccagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACACGACCTTTTGCTTACGGCACCTGGTGCCATTC-TTATCTACAGTGGATTCGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacctccagcttaca Alignment from Pairagon GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGA-CTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagacctgttttttgtatttcttccagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACACGACCTTTTGCTTACGGCACCTGGTGCCATTC-TTATCTACAGTGGATTCGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacctccagcttaca Alignment from Exonerate_protein2genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagacctgttttttgtatttcttccagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACACGACCTTTTGCTTACGGCACCTGGTGCCATTCTTATCTACAGTGGATTCGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacctccagcttaca Alignment from Exonerate_coding2genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagacctgttttttgtatttcttccagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACACGACCTTTTGCTTACGGCACCTGGTGCCATTCTTATCTACAGTGGATTCGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacctccagcttaca Alignment from GeneWise GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagacctgttttttgtatttcttccagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACACGACCTTTTGCTTACGGCACCTGGTGCCATTCTTATCTACAGTGGATTCGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacctccagcttaca #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAG-TACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGCTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGG-AGAACACAGCCAATGTGAATGCaggtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from CESAR ATCCTCATGATCCAG-TACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGCTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGG-AGAACACAGCCAATGTGAATGCaggtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Spaln_aa2Genome ATCCTCATGATCCAG-TACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGcTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAGAA-CACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Spaln_nt2Genome ATCCTCATGATCCAG-TACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGCTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGA-GAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Pairagon ATCCTCATGATCCAG-TACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGCTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGG-AGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGCTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGCTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGC-- ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGCTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAG-GAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGCGAATATATCCAACTTGTAGAGCAACTGAGGAACACAG-GGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTaggtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAG-GAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGCGAATATATCCAACTTGTAGAGCAACTGAGGAACACA-GGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTaggtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Spaln_aa2Genome cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacaggcaaagagccaagtctgatctttactaatcgaagagacatcaggaagattggcctagagagaaagcgaatatatccaacttgtagagcaactgaggaacacagggctcttgatgcagacattgcagctcagaagctgttttgggctgatctcagccagaaggccatctttaggtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Spaln_nt2Genome cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacaggcaaagagccaagtctgatctttactaatcgaagagacatcaggaagattggcctagagagaaagcgaatatatccaacttgtagagcaactgaggaacacagggctcttgatgcagacattgcagctcagaagctgttttgggctgatctcagccagaaggccatctttaggtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAG-GAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGCGAATATATCCAACTTGTAGAGCAACTGAGGAACACAG-GGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGCGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGCGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from GeneWise GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGCGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctaggtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAA-AGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctaggtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAAGGCATCACTCGAGGGG-GAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCT-GCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAA catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCtGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAGgtctggtctctgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGC-CTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAAGGCATCACTCGAGG-GGGAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAAGGCATCACTCGAGG-GGGAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAA catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAGgtctggtctctgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Exonerate_coding2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAA catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAGgtctggtctctgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCGTTAGGATTGAAAGCACTAG-TGGTGGAGCCGTTggtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCGTTAGGATTGAAAGCACTAG-TGGTGGAGCCGTTggtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTT------G cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAAcTTTGTGGCGGGAATGGCGTTAGGATTGAAAGCACTAGTGGTGGAGCCGTTGGTAGGAAgcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCGTTAGGATTGAAAGCACTAG-TGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCGTTAGGATTGAAAGCACTAG-TGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCGTTAGGATTGAAAGCACTAGTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCGTTAGGATTGAAAGCACTAGTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCGTTAGGATTGAAAGCACTAGTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgtttatttattatgttactctttagctTTAAAGCTACCCACAAATGAAGATATTCATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGA-TCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAggtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgtttatttattatgttactctttagctTTAAAGCTACCCACAAATGAAGATATTCATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATC-TCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAggtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTcATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATCTC-ATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTCATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGA-TCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTCATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGA-TCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATT--TTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTCATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATCTC---ATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATT--TTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTCATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATCTC---ATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTCATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAA-AACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccaggtAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTATACTCAACCAGTTGGAGCTG-TTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAA-AACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccaggtAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTATACTCAACCAGTTGGAGCTG-TTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTATACTCAACCAGTTGGAGCTGTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGG-AAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTATACTCAACCAGTTGGAGCTG-TTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAA-AACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTATACTCAACCAGTTGGAGCTG-TTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTATACTCAACCAGTTGGAGCTGTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTATACTCAACCAGTTGGAGCTGTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from GeneWise GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTATACTCAACCAGTTGGAGCTGTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttggtccattttgtcgccccagtataccggaggtcttcgtctctcagggGTGAACCTTCAGCGGAAACATACAGCTAATTTCGCACCATCGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCA-CGGCAGTGAGACCCAAgtaattaggctatggctcggctagagctatagaatgcctgacaatcccga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttggtccattttgtcgccccagtataccggaggtcttcgtctctcagggGTGAACCTTCAGCGGAAACATACAGCTAATTTCGCACCATCGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCA-CGGCAGTGAGACCCAAgtaattaggctatggctcggctagagctatagaatgcctgacaatcccga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGC cagttggtccattttgtcgccccagtataccggaggtcttcgtctctcagGGGTGAACCTTCAGCGGAAACATACAGCTAATTTCGCACCATCGGGACAGcCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACGGCAgtgagacccaagtaattaggctatggctcggctagagctatagaatgcctgacaatcccga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttggtccattttgtcgccccagtataccggaggtcttcgtctctcagGGGTGAACCTTCAGCGGAAACATACAGCTAATTTCGCACCATCGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCAC-GGCAGTGAGACCCAAgtaattaggctatggctcggctagagctatagaatgcctgacaatcccga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttggtccattttgtcgccccagtataccggaggtcttcgtctctcagGGGTGAACCTTCAGCGGAAACATACAGCTAATTTCGCACCATCGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCAC-GGCAGTGAGACCCAAgtaattaggctatggctcggctagagctatagaatgcctgacaatcccga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttggtccattttgtcgccccagtataccggaggtcttcgtctctcagGGGTGAACCTTCAGCGGAAACATACAGCTAATTTCGCACCATCGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACGGCAGTGAGACCCAAGtaattaggctatggctcggctagagctatagaatgcctgacaatcccga Alignment from Exonerate_coding2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttggtccattttgtcgccccagtataccggaggtcttcgtctctcagGGGTGAACCTTCAGCGGAAACATACAGCTAATTTCGCACCATCGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACGGCAGTGAGACCCAAGtaattaggctatggctcggctagagctatagaatgcctgacaatcccga Alignment from GeneWise ----------------------------------------------------GTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA CAGTTGGTCCATTTTGTCGCCCCAGTATACCGGAGGTCTTCGTCTCTCAGGGGTGAACCTTCAGCGGAAACATACAGCTAATTTCGCACCATCGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACGGCAGTGAGACCCAAgtaattaggctatggctcggctagagctatagaatgcctgacaatcccga #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaagcaaagataatttttatattttcaataagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTCGTTGCCACATGTGGGAAGGAACAATGCTTTGAAAGTATGGGACTTACAGGGGTCTG-GGAGCCTGTTTTTAGGGCCAAAAATgtgagggagggataaaggattggggaaataccatttttaagggctggaga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaagcaaagataatttttatattttcaataagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTCGTTGCCACATGTGGGAAGGAACAATGCTTTGAAAGTATGGGACTTACAGGGGTCT-GGGAGCCTGTTTTTAGGGCCAAAAATgtgagggagggataaaggattggggaaataccatttttaagggctggaga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaagcaaagataatttttatattttcaataagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTCGTTGCCACATGTGGGAAGGAACAATGCTTTGAAAGTATGGGACTTACAGGGGTCTGGGAGCCTGTTTTTAGGGCCAAAAATgtgagggagggataaaggattggggaaataccatttttaagggctggaga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaagcaaagataatttttatattttcaataagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTCGTTGCCACATGTGGGAAGGAACAATGCTTTGAAAGTATGGGACTTACAGGGGTCTGGG-AGCCTGTTTTTAGGGCCAAAAATgtgagggagggataaaggattggggaaataccatttttaagggctggaga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaagcaaagataatttttatattttcaataagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTCGTTGCCACATGTGGGAAGGAACAATGCTTTGAAAGTATGGGACTTACAGGGGTCTG-GGAGCCTGTTTTTAGGGCCAAAAATgtgagggagggataaaggattggggaaataccatttttaagggctggaga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaagcaaagataatttttatattttcaataagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTCGTTGCCACATGTGGGAAGGAACAATGCTTTGAAAGTATGGGACTTACAGGGGTCTGGGAGCCTGTTTTTAGGGCCAAAAATgtgagggagggataaaggattggggaaataccatttttaagggctggaga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaagcaaagataatttttatattttcaataagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTCGTTGCCACATGTGGGAAGGAACAATGCTTTGAAAGTATGGGACTTACAGGGGTCTGGGAGCCTGTTTTTAGGGCCAAAAATgtgagggagggataaaggattggggaaataccatttttaagggctggaga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaagcaaagataatttttatattttcaataagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTCGTTGCCACATGTGGGAAGGAACAATGCTTTGAAAGTATGGGACTTACAGGGGTCTGGGAGCCTGTTTTTAGGGCCAAAAATgtgagggagggataaaggattggggaaataccatttttaagggctggaga #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTG-CAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctataggtAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCAT-TGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTG-CAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctataggtAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCA-TTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTG-CAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCAT-TGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTG-CAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCAT-TGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATAC-AGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACCAGCAATCAGAAGGCTGTTGCAAATTACA-CCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAggtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATAC-AGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACCAGCAATCAGAAGGCTGTTGCAAATTACA-CCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAggtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACCAGCAATCAGAAGGCTGTTGCAAATTACACCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATA-CAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACCAGCAATCAGAAGGCTGTTGCAAATTACA-CCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATA-CAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACCAGCAATCAGAAGGCTGTTGCAAATTACA-CCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACCAGCAATCAGAAGGCTGTTGCAAATTACACCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACCAGCAATCAGAAGGCTGTTGCAAATTACACCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACCAGCAATCAGAAGGCTGTTGCAAATTACACCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac #### Yif1a_ID831_3 --> 0 - 0 Original Alignment CTGCACCGTTTTGTGTCCGTGAACAAA-CTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACCTCAAGTATTTCTTTGCTGTGGACACAGCCTACG-TGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from CESAR CTGCACCGTTTTGTGTCCGTGAACAAA-CTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACCTCAAGTATTTCTTTGCTGTGGACACAGCCTACG-TGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Spaln_aa2Genome CTGCACCGTTTTGTGTCCGTGAACAAA-CTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAAcCTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTGCTAAG-AAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Spaln_nt2Genome CTGCACCGTTTTGTGTCCGTGAAC-AAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACCTCAAGTATTTCTTTGCTGTGGACACAGCCTACGT-GCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Pairagon CTGCACCGTTTTGTGTCCGTGAACAAA-CTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACCTCAAGTATTTCTTTGCTGTGGACACAGCCTACGT-GCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Exonerate_protein2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACCTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Exonerate_coding2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACCTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from GeneWise CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACCTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttaactgtcctttctacttaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCG-ACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttaactgtcctttctacttaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCG-ACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAcGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGA-CTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCG-ACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCG-ACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACCT-CTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACC-TCTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACCTCTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACCT-CTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACCT-CTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACCTCTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACCTCTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACCTCTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGT-AAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactataattgtggtcaaggtgacttgttggtgtattacagGGCAGGAATGACATTAGCACTGTATCCATCTGCCAAGAAATGTATTTATCCCAAGCCGGCACGCA-ACACCACTGCAGCATCTGTAACaggtgaggctgagctttgctctgtgcctcactcattttgggccaaactgacc Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGT-AAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactataattgtggtcaaggtgacttgttggtgtattacagGGCAGGAATGACATTAGCACTGTATCCATCTGCCAAGAAATGTATTTATCCCAAGCCGGCACGC-AACACCACTGCAGCATCTGTAACaggtgaggctgagctttgctctgtgcctcactcattttgggccaaactgacc Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataattgtggtcaaggtgacttgttggtgtattacagGGCAGGAATGACATTAGCACTGTATCCATCTGCCAAGAAATGTATTTATCCCAAGCCGGCACGCAACACCACTGCAGCATCTGTAACAGgtgaggctgagctttgctctgtgcctcactcattttgggccaaactgacc Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGT-AAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataattgtggtcaaggtgacttgttggtgtattacagGGCAGGAATGACATTAGCACTGTATCCATCTGCCAAGAAATGTATTTATCCCAAGCCGGCACGCA-ACACCACTGCAGCATCTGTAACAGgtgaggctgagctttgctctgtgcctcactcattttgggccaaactgacc Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTG-TAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataattgtggtcaaggtgacttgttggtgtattacagGGCAGGAATGACATTAGCACTGTATCCATCTGCCAAGAAATGTATTTATCCCAAGCCGGCACGCA-ACACCACTGCAGCATCTGTAACAGgtgaggctgagctttgctctgtgcctcactcattttgggccaaactgacc Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataattgtggtcaaggtgacttgttggtgtattacagGGCAGGAATGACATTAGCACTGTATCCATCTGCCAAGAAATGTATTTATCCCAAGCCGGCACGCAACACCACTGCAGCATCTGTAACAGgtgaggctgagctttgctctgtgcctcactcattttgggccaaactgacc Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataattgtggtcaaggtgacttgttggtgtattacagGGCAGGAATGACATTAGCACTGTATCCATCTGCCAAGAAATGTATTTATCCCAAGCCGGCACGCAACACCACTGCAGCATCTGTAACAGgtgaggctgagctttgctctgtgcctcactcattttgggccaaactgacc Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataattgtggtcaaggtgacttgttggtgtattacagGGCAGGAATGACATTAGCACTGTATCCATCTGCCAAGAAATGTATTTATCCCAAGCCGGCACGCAACACCACTGCAGCATCTGTAACAGgtgaggctgagctttgctctgtgcctcactcattttgggccaaactgacc #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTG-GGAGCCTCGGATTAGGCTGCAAAAAGGTGAGTTCATCTTAGCAATGAGAGGGCTGcggtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaaaaatat Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACT-GGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGTTCATCTTAGCAATGAGAGGGCTGcggtgagtgaggggggtgtccttcgttgaaaaactggcattgtaatgaccat Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaaaaatat Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAG-GAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGG-GAGCCTCGGATTAGGCTGCAAAAAGGTGAGTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaaaaatat Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTG-GGAGCCTCGGATTAGGCTGCAAAAAGGTGAGTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaaaaatat Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaaaaatat Alignment from Exonerate_coding2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaaaaatat Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaaaaatat #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttaggaACAGCTAGCGGTTCTAACAGTCCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTT-GAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttaggaACAGCTAGCGGTTCTAACAGTCCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTG-GTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTG-AATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGG-TTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCCTTCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCT-CATGGGAGCCACAggtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCCTTCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCT-CATGGGAGCCACAggtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCcTTCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTC-ATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCCTTCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTC-ATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAG-CTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCCTTCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTC-ATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACA gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCCTTCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCCTTCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCA-TGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAAC-AGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACA---------------G gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCCTTCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCATGGGAGCCACAGGTAAGAGAGGAAGTCTgtggataggactggggccgctgagagcaagagag ####