#### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCATCTGGAAGCGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATC-TGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAggtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCATCTGGAAGCGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACT-ATCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAggtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCATCTGGAAGcGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCT-GTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCATCTGGAAGCGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTAT-CTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCATCTGGAAGCGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTAT-CTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTAT--CCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCATCTGGAAGCGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCT---GTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTAT--CCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCATCTGGAAGCGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCT---GTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATC-CGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCATCTGGAAGCGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCT-GTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg accatggttggccaagtgagcccttttcaatactgtatttttttttccaggTCCAGTTCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCC-GAAACAAGAAGCAGCCATGAAAggtaccacttgggggcaaaggctatcaaaaatgacactggattttccctga Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg accatggttggccaagtgagcccttttcaatactgtatttttttttccaggTCCAGTTCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCC-CGAAACAAGAAGCAGCCATGAAAggtaccacttgggggcaaaggctatcaaaaatgacactggattttccctga Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGC-AGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG accatggttggccaagtgagcccttttcaatactgtatttttttttccagGTCCAGTTCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCcAGGAAACTCTTGCAGCAGATCCGACTTGCCCG-AAACAAGAAGCAGCCATGAAAGgtaccacttgggggcaaaggctatcaaaaatgacactggattttccctga Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCG-CAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG accatggttggccaagtgagcccttttcaatactgtatttttttttccagGTCCAGTTCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCC-GAAACAAGAAGCAGCCATGAAAGgtaccacttgggggcaaaggctatcaaaaatgacactggattttccctga Alignment from Pairagon GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCG-CAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG accatggttggccaagtgagcccttttcaatactgtatttttttttccagGTCCAGTTCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCC-GAAACAAGAAGCAGCCATGAAAGgtaccacttgggggcaaaggctatcaaaaatgacactggattttccctga Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG accatggttggccaagtgagcccttttcaatactgtatttttttttccagGTCCAGTTCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCCGAAACAAGAAGCAGCCATGAAAGgtaccacttgggggcaaaggctatcaaaaatgacactggattttccctga Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG accatggttggccaagtgagcccttttcaatactgtatttttttttccagGTCCAGTTCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCCGAAACAAGAAGCAGCCATGAAAGgtaccacttgggggcaaaggctatcaaaaatgacactggattttccctga Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG accatggttggccaagtgagcccttttcaatactgtatttttttttccagGTCCAGTTCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCCAGGAAACTCTTGCAGCAGATCCGACTTGCCCGAAACAAGAAGCAGCCATGAAAGgtaccacttgggggcaaaggctatcaaaaatgacactggattttccctga #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAA-AAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagttACCCCAGTCATAGAGCAGGGGAATAAGCAAGCCCCGTGGCCAAAGATGGAAAGAGTCCC-TGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAggtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAA-AAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagttACCCCAGTCATAGAGCAGGGGAATAAGCAAGCCCCGTGGCCAAAGATGGAAAGAGT-CCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAggtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGCAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAA-AAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGCAAGCCCCGTGGCCAAAGATGGAAAGAGT-CCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAA-AAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGCAAGCCCCGTGGCCAAAGATGGAAAGAGT-CCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGCAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGCAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGCAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagaaTCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTGGTGCTTTTAGATTCTC-AGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGagtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagaaTCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTGGTGCTTTTAGATTCTC-AGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGagtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGC-CAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTGGTGCTTTTAGATTCTCA-GACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCC---TGAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTGGTGCTTTTAGATTCTCA-GACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCC---TGAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCC-ATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCCATTTTAGAGGACTTGCAGAAAATTGGGA-GGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from CESAR TGTGTAAAGGAAGCC-ATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCCATTTTAGAGGACTTGCAGAAAATTGGGA-GGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCC-ATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCcATTTTAGAGGACTTGCAGAAAATTGGGAG-GAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCC-ATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCCATTTTAGAGGACTTGCAGAAAATTGGG-AGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Pairagon TGTGTAAAGGAAG-CCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCCATTTTAGAGGACTTGCAGAAAATTGGG-AGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCCATTTTAGAGGACTTGCAGAAAATTGGGAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCCATTTTAGAGGACTTGCAGAAAATTGGGAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCCATTTTAGAGGACTTGCAGAAAATTGGGAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta #### Actn3_ID690_20 --> 0 - 0 Original Alignment GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGAC-CCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctaatttagcatctatgctcacagtctgtgacctgtcccaacccagGGAGAAGTGGAGTTTGCTCGTATCATGACGATGGTTGACCCCCAATGCAGCTGGAGTTGTGAACTTCC-GGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGAGATAAAgtgagcctcattggtgggaggggctgtaatgctaggacatgacccaaaac Alignment from CESAR GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGAC-CCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctaatttagcatctatgctcacagtctgtgacctgtcccaacccagGGAGAAGTGGAGTTTGCTCGTATCATGACGATGGTTGACCCCCAATGCAGCTGGAGTTGTGAACTTC-CGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGAGATAAAgtgagcctcattggtgggaggggctgtaatgctaggacatgacccaaaac Alignment from Spaln_aa2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctaatttagcatctatgctcacagtctgtgacctgtcccaacccagGGAGAAGTGGAGTTTGCTCGTATCATGACGATGGTTGACCCCCAATGCAGCTGGAGTTGTGAACTTCCGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGAGATAAAgtgagcctcattggtgggaggggctgtaatgctaggacatgacccaaaac Alignment from Spaln_nt2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCC-CAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctaatttagcatctatgctcacagtctgtgacctgtcccaacccagGGAGAAGTGGAGTTTGCTCGTATCATGACGATGGTTGACCCCCAATGCAGCTGGAGTTGTGAACTTCC-GGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATT---AATCCTGACAGGAGATAAAgtgagcctcattggtgggaggggctgtaatgctaggacatgacccaaaac Alignment from Pairagon GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGA-CCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctaatttagcatctatgctcacagtctgtgacctgtcccaacccagGGAGAAGTGGAGTTTGCTCGTATCATGACGATGGTTGACCCCCAATGCAGCTGGAGTTGTGAACTTCC-GGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATT---AATCCTGACAGGAGATAAAgtgagcctcattggtgggaggggctgtaatgctaggacatgacccaaaac Alignment from Exonerate_protein2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctaatttagcatctatgctcacagtctgtgacctgtcccaacccagGGAGAAGTGGAGTTTGCTCGTATCATGACGATGGTTGACCCCCAATGCAGCTGGAGTTGTGAACTTCCGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGAGATAAAgtgagcctcattggtgggaggggctgtaatgctaggacatgacccaaaac Alignment from Exonerate_coding2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctaatttagcatctatgctcacagtctgtgacctgtcccaacccagGGAGAAGTGGAGTTTGCTCGTATCATGACGATGGTTGACCCCCAATGCAGCTGGAGTTGTGAACTTCCGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGAGATAAAgtgagcctcattggtgggaggggctgtaatgctaggacatgacccaaaac Alignment from GeneWise GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctaatttagcatctatgctcacagtctgtgacctgtcccaacccagGGAGAAGTGGAGTTTGCTCGTATCATGACGATGGTTGACCCCCAATGCAGCTGGAGTTGTGAACTTCCGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGAGATAAAgtgagcctcattggtgggaggggctgtaatgctaggacatgacccaaaac #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCT-CATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from CESAR AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagcggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCT-CATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Spaln_aa2Genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATgGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTC-ATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Spaln_nt2Genome AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCT-CATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Pairagon AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCT-CATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Exonerate_protein2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATC--TCCATGGGTTACGATCTG aagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTC---ATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Exonerate_coding2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATC--TCCATGGGTTACGATCTG aagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTC---ATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from GeneWise CGG------------------------------------------------------AATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG AAGTGGAGACTTCACCTGATAGACATTACTGCCTCCCTCCCTCTCCACAGAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTC-ATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCA-GGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCACGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACA-GAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCA-GGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCACGGTCTGCGCCAGCAGGAACAGAACATCATCAATT-ACAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCA-GGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAcGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAG-AGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCA-GGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCACGGTCTGCGCCAGCAGGAACAGAACATCATCAATTAC-AGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCA-GGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCACGGTCTGCGCCAGCAGGAACAGAACATCATCAATTAC-AGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCA-GGTCTGCGGCAGCAGGAACAGAACATCATCAATTAC--AAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCACGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAG---AGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCA-GGTCTGCGGCAGCAGGAACAGAACATCATCAATTAC--AAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCACGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAG---AGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from GeneWise TAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccaggaagTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCACGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAG-ATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGCATTCCAAAGATTTGCCAAACATACGGGCTGCGGCCCA-GTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAG-ATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGCATTCCAAAGATTTGCCAAACATACGGGCTGCGGC-CCAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGCATTCCAAAGATTTGCCAAACATACGGGCTGCGGCCCAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAG-ATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGCATTCCAAAGATTTGCCAAACATACGGGCTGCGGCC-CAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAG-ATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGCATTCCAAAGATTTGCCAAACATACGGGCTGCGGCC-CAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGCATTCCAAAGATTTGCCAAACATACGGGCTGCGGCCCAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGCATTCCAAAGATTTGCCAAACATACGGGCTGCGGCCCAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGCATTCCAAAGATTTGCCAAACATACGGGCTGCGGCCCAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTG-CAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCA-TAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTG-CAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTC-ATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGC-AGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTC-ATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTG-CAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTC-ATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTC-CGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG ttgatataggtgagataggtcttggaaaaacaatggtcttggctttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGAGAACCGTGTAGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTGGAAGACTTCCCAAGACTATCAACACCTACACAAGCCGC-CTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGTTAGTTTCGgtatccccagcagggtatgctgcgtgttcaagctttgcctacatgcccac Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTC-CGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG ttgatataggtgagataggtcttggaaaaacaatggtcttggctttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGAGAACCGTGTAGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTGGAAGACTTCCCAAGACTATCAACACCTACACAAGCCGCCT-GTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGTTAGTTTCGgtatccccagcagggtatgctgcgtgttcaagctttgcctacatgcccac Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG ttgatataggtgagataggtcttggaaaaacaatggtcttggctttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGAGAACCGTGTAGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTGGAAGACTTCCCAAGACTATCAACACCTACACAAGCCGCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGTTAGTTTCGgtatccccagcagggtatgctgcgtgttcaagctttgcctacatgcccac Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGA-GACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG ttgatataggtgagataggtcttggaaaaacaatggtcttggctttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGAGAACCGTGTAGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTGGAAGACTTCCCAAGACTATCAACACCTACACAAGCC-GCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGTTAGTTTCGgtatccccagcagggtatgctgcgtgttcaagctttgcctacatgcccac Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTT-CCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG ttgatataggtgagataggtcttggaaaaacaatggtcttggctttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGAGAACCGTGTAGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTGGAAGACTTCCCAAGACTATCAACACCTACACAAGCC-GCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGTTAGTTTCGgtatccccagcagggtatgctgcgtgttcaagctttgcctacatgcccac Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG ttgatataggtgagataggtcttggaaaaacaatggtcttggctttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGAGAACCGTGTAGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTGGAAGACTTCCCAAGACTATCAACACCTACACAAGCCGCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGTTAGTTTCGgtatccccagcagggtatgctgcgtgttcaagctttgcctacatgcccac Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG ttgatataggtgagataggtcttggaaaaacaatggtcttggctttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGAGAACCGTGTAGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTGGAAGACTTCCCAAGACTATCAACACCTACACAAGCCGCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGTTAGTTTCGgtatccccagcagggtatgctgcgtgttcaagctttgcctacatgcccac Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG ttgatataggtgagataggtcttggaaaaacaatggtcttggctttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGAGAACCGTGTAGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTGGAAGACTTCCCAAGACTATCAACACCTACACAAGCCGCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGTTAGTTTCGgtatccccagcagggtatgctgcgtgttcaagctttgcctacatgcccac #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTG-CTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagagACTGCATCCAAACAGGGCTTGCTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACC-CAATGTCAATGTACAAAACTTCCATACTaggtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTT-CTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagagACTGCATCCAAACAGGGCTTGCTTCCTCTGGTGTCAGCGGAAAATAGCTCCATAC-CCAATGTCAATGTACAAAACTTCCATACTaggtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGCTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTC-TCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCC tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGCTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACC-CAATGTCAATGTACAAAACTTCCatactaggtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTT-CTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGCTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACC-CAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGCTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGCTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGCTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTG-AAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagaaATAGTTGACGGGAACCTGCAAAATGACCCTTGGCATGATCTGGACAATCATCCTCC-CTTTGCCATTCAGGACATCTCTGTAGAAggtaagctgatgaaaagtgcatgagccaggccagctcaacctcctcctcat Alignment from CESAR aaATTGTTGACGGGAACCTG-AAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagaaATAGTTGACGGGAACCTGCAAAATGACCCTTGGCATGATCTGGACAATCATCCTC-CCTTTGCCATTCAGGACATCTCTGTAGAAggtaagctgatgaaaagtgcatgagccaggccagctcactgccgcctctga Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTG-AAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGcAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCC-TTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaacctcctcctcat Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTG-AAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGCAAAATGACCCTTGGCATGATCTGGACAATCATCCTCC-CTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaacctcctcctcat Alignment from Pairagon AAATTGTTGACGGGAACCTG-AAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGCAAAATGACCCTTGGCATGATCTGGACAATCATCCTCC-CTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaacctcctcctcat Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTG-AAGATGACCCTGGGCATGATCTGGACCATCATCCTC--CGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGCAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCC---TTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaacctcctcctcat Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTG-AAGATGACCCTGGGCATGATCTGGACCATCATCCTC--CGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGCAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCC---TTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaacctcctcctcat Alignment from GeneWise AAATTGTTGACGGGAAC-CTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGCAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCC-TTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaacctcctcctcat #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAG-ATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tacacttcaactcatgaccttcaacgtttctattctccttcaaattccaggtGCAAGGCTGCCTAGGCCTGACAAAGGCAAGCATGTGCTTTCACAAAATTGCCAATGTCAATA-TGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAG-ATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tacacttcaactcatgaccttcaacgtttctattctccttcaaattccaggtGCAAGGCTGCCTAGGCCTGACAAAGGCAAGCATGTGCTTTCACAAAATTGCCAATGTCAAT-ATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGCATGTGCTTTCACAAAATTGCCAATGTCAATATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAG-ATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGCATGTGCTTTCACAAAATTGCCAATGTCAAT-ATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAG-ATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGCATGTGCTTTCACAAAATTGCCAATGTCAAT-ATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGCATGTGCTTTCACAAAATTGCCAATGTCAATATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGCATGTGCTTTCACAAAATTGCCAATGTCAATATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGCATGTGCTTTCACAAAATTGCCAATGTCAATATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt #### Actr1a_ID9872_8 --> 0 - 1 Original Alignment ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTA-CGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACCGGCGTACACTGTTTTCCAACATTGTCCTCTCAG-AGGTTCTACCCTGTTTAAAggtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from CESAR ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTA-CGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACCGGCGTACACTGTTTTCCAACATTGTCCTCTCA-GAGGTTCTACCCTGTTTAAAggtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Spaln_aa2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACCGGCGTACACTGTTTTCCAACATTGTCCTCTCAGAGGTTCTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Spaln_nt2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGA-TTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACCGGCGTACACTGTTTTCCAACATTGTCCTCTCA-GAGGTTCTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Pairagon ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTA-CGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACCGGCGTACACTGTTTTCCAACATTGTCCTCTCA-GAGGTTCTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Exonerate_protein2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACCGGCGTACACTGTTTTCCAACATTGTCCTCTCAGAGGTTCTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Exonerate_coding2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACG---GCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTA--CCGGCGTACACTGTTTTCCAACATTGTCCTCTCAGA-GGTTCTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from GeneWise ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGT---ACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACCGGCGTACACTGTTTTCCAACATTGTCCTCTCAGAGGT---TCTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCA-CAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccaggcCTGGAGATGGGCCCACCAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGA-ACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAggtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from CESAR gtCTGGAGATGGGCCCA-CAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccaggcCTGGAGATGGGCCCACCAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAG-AACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAggtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCA-CAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCAcCAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGAA-CGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCA-CAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACCAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGA-ACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Pairagon GTCTGGAGATGGGCCCA-CAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACCAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGA-ACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACCAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGAACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACCAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGAACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACCAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGAACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCT-GAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTG-CTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCACAACAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAGggtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCT-GAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACT-GCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCACAA---CAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGggtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTGCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCT-GAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTG-CTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCAC--AACAA-GCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCT-GAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTG-CTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCAC---AACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTGCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTGCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTCGAGTGGTGGCAACAGGAGGTGGCAGAGACTGCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCACAACAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTG-ATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGCATCCCCCAACGTGGGGAGGTGAATGCAGCTG-CGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from CESAR TACCCTCCTCCACTG-ATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGCATCCCCCAACGTGGGGAGGTGAATGCAGCT-GCGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGCATCCCCCAACGTGGGGAGGTGAATGCAGCTGCGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTG-ATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGCATCCCCCAACGTGGGGAGGTGAATGCAGCTG-CGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Pairagon TACCCTCCTCCACTG-ATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGCATCCCCCAACGTGGGGAGGTGAATGCAGCTG-CGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGCATCCCCCAACGTGGGGAGGTGAATGCAGCTGCGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGCATCCCCCAACGTGGGGAGGTGAATGCAGCTGCGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGCATCCCCCAACGTGGGGAGGTGAATGCAGCTGCGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atccagatgccaggtaataggtaatagggaggagagctgtttcattgcaggGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtgagtatataacccacagggagagccatgtaccttctctgctgccactc Alignment from CESAR gGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atccagatgccaggtaataggtaatagggaggagagctgtttcattgcaggGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATG-GCTTCTTACAGAAGgtgagtatataacccacagggagagccatgtaccttctctgctgccactc Alignment from Spaln_aa2Genome GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atccagatgccaggtaataggtaatagggaggagagctgtttcattgcagGGCTCAGGAGGTAAAAcGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGC-TTCTTACAGAAGgtgagtatataacccacagggagagccatgtaccttctctgctgccactc Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atccagatgccaggtaataggtaatagggaggagagctgtttcattgcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtgagtatataacccacagggagagccatgtaccttctctgctgccactc Alignment from Pairagon GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atccagatgccaggtaataggtaatagggaggagagctgtttcattgcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGG-CTTCTTACAGAAGgtgagtatataacccacagggagagccatgtaccttctctgctgccactc Alignment from Exonerate_protein2genome GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAA atccagatgccaggtaataggtaatagggaggagagctgtttcattgcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGgtgagtatataacccacagggagagccatgtaccttctctgctgccactc Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAA atccagatgccaggtaataggtaatagggaggagagctgtttcattgcagGGCTCAGGAGGTAAAACGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCTTCTTACAGAAGgtgagtatataacccacagggagagccatgtaccttctctgctgccactc Alignment from GeneWise GTGGGGCTCAGGAGGTAAAAGAAAGTC atccagatgccaggtaataggtaatagggaggagagctgtttcattgcagggctcaggaggtaaaacgaaagtcccttctttcattctctggattggcagatggcttcttacagaaggtgagtatataacccacagggagAGCCATGTACCTTCTCTGCTGCCACTC #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCC-CTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGTTCCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGA-GTCGGGCTGTCTGGGCCGTCGGgggtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCC-CTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGTTCCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGT-CGGGCTGTCTGGGCCGTCGGgggtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCC-CTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGA------CTAGGCTGTCTGGGCCGTGG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGTTCCcCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGTCGGGCTGTCTGGGCCGTCGGGGGTAAgtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCC-CTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGTTCCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGTC-GGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGAT-CCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGTTCCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGTC-GGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGTTCCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGTTCCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGTTCCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGCTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCC-GGACCTTATGAATggtaagatagcttaggggatgtttccccccttgaatcttaaaggtGGGGAC Alignment from CESAR GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGCTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATC-CGGACCTTATGAATggtaagatagcttaggggatggttcacatttggtattttacaggtGGGGAC Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGcTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCG-GACCTTATGAATGgtaagatagcttaggggatgtttccccccttgaatcttaaagGTGGGGAC Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGCTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCC-GGACCTTATGAATGgtaagatagcttaggggatgtttccccccttgaatcttaaagGTGGGGAC Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGCTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCC-GGACCTTATGAATGgtaagatagcttaggggatgtttccccccttgaatcttaaagGTGGGGAC Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAAC GGTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGCTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCGGACCTTATGAATGgtaagatagcttaggggatgtttccccccttgaatcttaaaGGTGGGGAC Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAAC GGTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGCTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCGGACCTTATGAATGgtaagatagcttaggggatgtttccccccttgaatcttaaaGGTGGGGAC Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGCTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCG-GACCTTATGAATGgtaagatagcttaggggatgtttccccccttgaatcttaaagGTGGGGAC #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGT-CTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtaggTATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGG-AGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from CESAR gTACGCCATGAAGTGT-CTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtaggTATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAAC-AGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTG----GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCCTGGAaAACAAGAAACGCATCAAGATGAAACA-GGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTC-TGGA---CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACA-GGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Pairagon GTACGCCATGAAGTGTCTGG----ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACA-GGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from GeneWise GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCAT-CGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTGTACATCCGAATCATCGGACACGGCGGCTTTGGTG-GGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGatgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCAT-CGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTGTACATCCGAATCATCGGACACGGCGGCTTTGGT-GGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGatgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTGTACATCCGAATCATCGGACACGGCGGCTTTGGTGGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Spaln_nt2Genome CTGACCATGAATGACTTCAGTGTGCAT-CGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTGTACATCCGAATCATCGGACACGGCGGCTTTGGTGGGT-TTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCAT-CGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTGTACATCCGAATCATCGGACACGGCGGCTTTGGTG-GGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTGTACATCCGAATCATCGGACACGGCGGCTTTGGTGGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTGTACATCCGAATCATCGGACACGGCGGCTTTGGTGGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTGTACATCCGAATCATCGGACACGGCGGCTTTGGTGGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAG-GAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccataaatagtgatttccgccttgttctgttcacagATTAAGAAATATGAAAAGCTGGAGACAGAGCGAGGAACGTGTGGTCCGCAGCCGAGAGATCT-TGAGTCCTACATTATGAAGGAGCTCCTGGCTTGCTCACATgtaagtgctgaatctatctgttgttcctagatatgtggggttaaagagag Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAG-GAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccataaatagtgatttccgccttgttctgttcacagATTAAGAAATATGAAAAGCTGGAGACAGAGCGAGGAACGTGTGGTCCGCAGCCGAGAGA-TCTTGAGTCCTACATTATGAAGGAGCTCCTGGCTTGCTCACATgtaagtgctgaatctatctgttgttcctagatatgtggggttaaagagag Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccataaatagtgatttccgccttgttctgttcacagATTAAGAAATATGAAAAGCTGGAGACAGAGCGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTGAGTCCTACATTATGAAGGAGCTCCTGGCTTGCTCACATgtaagtgctgaatctatctgttgttcctagatatgtggggttaaagagag Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAG-GAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccataaatagtgatttccgccttgttctgttcacagATTAAGAAATATGAAAAGCTGGAGACAGAGCGAGGAACGTGTGGTCCGCAGCCGAGAGATCTT-GAGTCCTACATTATGAAGGAGCTCCTGGCTTGCTCACATgtaagtgctgaatctatctgttgttcctagatatgtggggttaaagagag Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAG-GAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccataaatagtgatttccgccttgttctgttcacagATTAAGAAATATGAAAAGCTGGAGACAGAGCGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTGAGTCCTACATTATGAAGGAGCTCCTGGCTTGCTCACATgtaagtgctgaatctatctgttgttcctagatatgtggggttaaagagag Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccataaatagtgatttccgccttgttctgttcacagATTAAGAAATATGAAAAGCTGGAGACAGAGCGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTGAGTCCTACATTATGAAGGAGCTCCTGGCTTGCTCACATgtaagtgctgaatctatctgttgttcctagatatgtggggttaaagagag Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccataaatagtgatttccgccttgttctgttcacagATTAAGAAATATGAAAAGCTGGAGACAGAGCGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTGAGTCCTACATTATGAAGGAGCTCCTGGCTTGCTCACATgtaagtgctgaatctatctgttgttcctagatatgtggggttaaagagag Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccataaatagtgatttccgccttgttctgttcacagATTAAGAAATATGAAAAGCTGGAGACAGAGCGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTGAGTCCTACATTATGAAGGAGCTCCTGGCTTGCTCACATgtaagtgctgaatctatctgttgttcctagatatgtggggttaaagagag #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCA-TCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCACTCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGG-TAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCA-TCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCACTCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTA-TGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCA-TCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCAcTCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTAT-GGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCA-TCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTAATTCAGCACTCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTA-TGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCA-TCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTAATTCAGCACTCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTAT-GGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCACTCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCACTCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCACTCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCT-GAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTCGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAG-GGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCT-GAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTCGAGACCCTTACAGTAGACCCAGAGTCAATCACCA-CCCAAGGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTCGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCT-GAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTCGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAG-GGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCT-GAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTCGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAG-GGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTCGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTCGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTCGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCTGGC-ACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTCACCTATCAACAGGACCCATGGGCAATGACAGATG-GGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from CESAR GTAGAGAGTCCTGGC-ACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTCACCTATCAACAGGACCCATGGGCAATGACAGAT-GGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGC-ACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTcACCTATCAACAGGACCCATGGGCAATGACAGATGG-GAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Spaln_nt2Genome GTAGAGAGTCCTGG-CACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTCACCTATCAACAGGACCCATGGGCAATGACAGATG-GGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Pairagon GTAGAGAGTCCTGG-CACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTCACCTATCAACAGGACCCATGGGCAATGACAGATG-GGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTCACCTATCAACAGGACCCATGGGCAATGACAGATGGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTCACCTATCAACAGGACCCATGGGCAATGACAGATGGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from GeneWise -----GGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcaggtagagagTCCTGGTCACCTATCAACAGGACCCATGGGCAATGACAGATGG-GAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg aaccatattgcttgcctatacataaggaaccatgtcatctctctccaaagGCTACACAGTTAGATGCAGCATTCATCAGGAAGCGAGCCCTTTGGTCTGGTGCTAATCATTG-GCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAggtgagcagtttttaaccttctgacaggcctccacatagggctgactgaga Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg aaccatattgcttgcctatacataaggaaccatgtcatctctctccaaagGCTACACAGTTAGATGCAGCATTCATCAGGAAGCGAGCCCTTTGGTCTGGTGCTAATCATT-GGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAggtgagcagtttttaaccttctgacaggcctccacatagggctgactgaga Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatacataaggaaccatgtcatctctctccaaagGCTACACAGTTAGATGCAGCATTCATCAGGAAGCGAGCCCTTTGGTCTGGTGCTAATCATTGGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtgagcagtttttaaccttctgacaggcctccacatagggctgactgaga Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatacataaggaaccatgtcatctctctccaaagGCTACACAGTTAGATGCAGCATTCATCAGGAAGCGAGCCCTTTGGTCTGGTGCTAATCATTG-GCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtgagcagtttttaaccttctgacaggcctccacatagggctgactgaga Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGGAAG-GAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatacataaggaaccatgtcatctctctccaaagGCTACACAGTTAGATGCAGCATTCATCAGGAAGCGAGCCCTTTGGTCTGGTGCTAATCATTG-GCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtgagcagtttttaaccttctgacaggcctccacatagggctgactgaga Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatacataaggaaccatgtcatctctctccaaagGCTACACAGTTAGATGCAGCATTCATCAGGAAGCGAGCCCTTTGGTCTGGTGCTAATCATTGGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtgagcagtttttaaccttctgacaggcctccacatagggctgactgaga Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatacataaggaaccatgtcatctctctccaaagGCTACACAGTTAGATGCAGCATTCATCAGGAAGCGAGCCCTTTGGTCTGGTGCTAATCATTGGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtgagcagtttttaaccttctgacaggcctccacatagggctgactgaga Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatacataaggaaccatgtcatctctctccaaagGCTACACAGTTAGATGCAGCATTCATCAGGAAGCGAGCCCTTTGGTCTGGTGCTAATCATTGGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtgagcagtttttaaccttctgacaggcctccacatagggctgactgaga #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCA-CCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCCTGGAATTATCCTGTGAACTTGATGA-CATACCTTTGGTGGGGGCCATTGCTGCAggtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCC-TGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCCTGGAATTATCCTGTGAACTTGATG-ACATACCTTTGGTGGGGGCCATTGCTGCAggtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCCTGGAATTATCCTGTGAACTTGATGACATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCA-CCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCCTGGAATTATCCTGTGAACTTGATGA-CATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCA-CCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCCTGGAATTATCCTGTGAACTTGATGA-CATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCCTGGAATTATCCTGTGAACTTGATGACATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCCTGGAATTATCCTGTGAACTTGATGACATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCCTGGAATTATCCTGTGAACTTGATGACATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGC-CAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttataggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCCAAGAGATGCAGGAACGGTTGGTATCTG-CTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTggtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGC-CAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttataggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCCAAGAGATGCAGGAACGGTTGGTATCTG-CTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTggtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTATGAT---GACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCCAAGAGATGCAGGAACGGTTGGTATCTGCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCC-AGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCCAAGAGATGCAGGAACGGTTGGTATCTG-CTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAG-CCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCCAAGAGATGCAGGAACGGTTGGTATCTG-CTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCCAAGAGATGCAGGAACGGTTGGTATCTGCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCCAAGAGATGCAGGAACGGTTGGTATCTGCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCCAAGAGATGCAGGAACGGTTGGTATCTGCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGAC-GTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagccCCAACAGTTCTAGTAGATCGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCT-TGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from CESAR ccCCCACAGTGCTGGTAGAC-GTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagccCCAACAGTTCTAGTAGATCGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGA-TCTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATCGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGA-CGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATCGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATC-TTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Pairagon CCCCCACAGTGCTGGTAGA-CGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATCGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATC-TTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATCGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATCGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATCGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag #### Aldh3b2_ID243_9 --> 0 - 1 Original Alignment GTGGTGAATCAGATGTTG-GAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg atgctgcagcaaactaacagaactcaccagccgttctggttgtatttcagGTGGTGAATCAGATGTTGCGAACGCACAAGCAGTGGGGGCTTTGGAGGCA-TGATGGCTTCCTCTACCTGACCCTGCCAGCTTTGCCTTTGGGTGGGGTTggtatgctcttgccccctgttgccatcctagaaagttctgtgctactccac Alignment from CESAR GTGGTGAATCAGATGTTG-GAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg atgctgcagcaaactaacagaactcaccagccgttctggttgtatttcagGTGGTGAATCAGATGTTGCGAACGCACAAGCAGTGGGGGCTTTGGAGGC-ATGATGGCTTCCTCTACCTGACCCTGCCAGCTTTGCCTTTGGGTGGGGTTggtatgctcttgccccctgttgccatcctagaaagttctgtgctactccac Alignment from Spaln_aa2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccagccgttctggttgtatttcagGTGGTGAATCAGATGTTGCGAACGCACAAGCAGTGGGGGCTTTGGAGGCATGATGGCTTCCTCTACCTGACCCTGCCAGCTTTGCCTTTGGGTGGGGTTGgtatgctcttgccccctgttgccatcctagaaagttctgtgctactccac Alignment from Spaln_nt2Genome GTGGTGAATCAGATGTTG-GAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccagccgttctggttgtatttcagGTGGTGAATCAGATGTTGCGAACGCACAAGCAGTGGGGGCTTTGGAGGC-ATGATGGCTTCCTCTACCTGACCCTGCCAGCTTTGCCTTTGGGTGGGGTTGgtatgctcttgccccctgttgccatcctagaaagttctgtgctactccac Alignment from Pairagon GTGGTGAATCAGATGTTG-GAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccagccgttctggttgtatttcagGTGGTGAATCAGATGTTGCGAACGCACAAGCAGTGGGGGCTTTGGAGGC-ATGATGGCTTCCTCTACCTGACCCTGCCAGCTTTGCCTTTGGGTGGGGTTGgtatgctcttgccccctgttgccatcctagaaagttctgtgctactccac Alignment from Exonerate_protein2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccagccgttctggttgtatttcagGTGGTGAATCAGATGTTGCGAACGCACAAGCAGTGGGGGCTTTGGAGGCATGATGGCTTCCTCTACCTGACCCTGCCAGCTTTGCCTTTGGGTGGGGTTGgtatgctcttgccccctgttgccatcctagaaagttctgtgctactccac Alignment from Exonerate_coding2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccagccgttctggttgtatttcagGTGGTGAATCAGATGTTGCGAACGCACAAGCAGTGGGGGCTTTGGAGGCATGATGGCTTCCTCTACCTGACCCTGCCAGCTTTGCCTTTGGGTGGGGTTGgtatgctcttgccccctgttgccatcctagaaagttctgtgctactccac Alignment from GeneWise GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG atgctgcagcaaactaacagaactcaccagccgttctggttgtatttcagGTGGTGAATCAGATGTTGCGAACGCACAAGCAGTGGGGGCTTTGGAGGCATGATGGCTTCCTCTACCTGACCCTGCCAGCTTTGCCTTTGGGTGGGGTTGgtatgctcttgccccctgttgccatcctagaaagttctgtgctactccac #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatactggcaacctcactccctttgccccaccacagaaATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTT-AGCCATTTCTGCTTCAggtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatactggcaacctcactccctttgccccaccacagaaATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGT-TAGCCATTTCTGCTTCAggtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATcGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTA-GCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTT-AGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTA-GCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACCAATGTGGAG-CTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCCTGGTAACACGCACAAGAACAGAACACCTCTCTG-CCAGGACAAGTTAAGGAACAAAggtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from CESAR GTGTACAGTGCCACCAATGTGGAG-CTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCCTGGTAACACGCACAAGAACAGAACACCTCTCT-GCCAGGACAAGTTAAGGAACAAAggtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Spaln_aa2Genome GTGTACAGTGCCACCAATGTGGAG-CTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGcCTGGTAACACGCACAAGAACAGAACACCTCTCTGC-CAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Spaln_nt2Genome GTGTACAGTGCCACCAATGTGGAG-CTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCCTGGTAACACGCACAAGAACAGAACACCTCTCTG-CCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Pairagon GTGTACAGTGCCACCAATGTGGAG-CTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCCTGGTAACACGCACAAGAACAGAACACCTCTCTG-CCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCCTGGTAACACGCACAAGAACAGAACACCTCTCTGCCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Exonerate_coding2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCCTGGTAACACGCACAAGAACAGAACACCTCTCTGCCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCCTGGTAACACGCACAAGAACAGAACACCTCTCTGCCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACC-CCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCACTGGAGCTTGCTGTGACTTTGGGGAACTTAG-GTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTggtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCC-CTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCACTGGAGCTTGCTGTGACTTTGGGGAACTTA-GGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTggtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCACTGGAGCTTGCTGTGACTTTGGGGAACTTAGGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGC-GAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCACTGGAGCTTGCTGTGACT-TTGGGGAACTTAGGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCC-CTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGG----------------------------------------------------- gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCACTGGAGCTTGCTGTGACTTTGGGGAACTTAG-GTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGGTACCCTGCTAGGTGGTGCTTCCATGTTGGTGAATGGTGCCTACAGGACT Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCACTGGAGCTTGCTGTGACTTTGGGGAACTTAGGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Exonerate_coding2genome AAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctCAGCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCACTGGAGCTTGCTGTGACTTTGGGGAACTTAGGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCACTGGAGCTTGCTGTGACTTTGGGGAACTTAGGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCT-ATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTACAGGCCATCTGGAGGAGGTTGTTTTGGCTCATGCTAAAAACTCCAGCACAGTTT---GCAG-TGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCT-ATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTACAGGCCATCTGGAGGAGGTTGTTTTGGCTCATGCTAAAAACTCCAGCACAGTTT---GCA-GTGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTACAGGCCATCTGGAGGAGGTTGTTTTGGCTCATGCTAAAAACTCCAGCACAGTT---TGCAGTGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCT-ATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTACAGGCCATCTGGAGGAGGTTGTTTTGGCTCATGCTAAAAACTCCAGCACAGTT---TGCAG-TGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCT-ATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTACAGGCCATCTGGAGGAGGTTGTTTTGGCTCATGCTAAAAACTCCAGCACAGTTTGCAG----TGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTACAGGCCATCTGGAGGAGGTTGTTTTGGCTCATGCTAAAAACTCCAGCACAGTT---TGCAGTGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTACAGGCCATCTGGAGGAGGTTGTTTTGGCTCATGCTAAAAACTCCAGCACAGTT---TGCAGTGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCTTACAGGCCATCTGGAGGAGGTTGTTTTGGCTCATGCTAAAAACTCCAGCACAGTT---TGCAGTGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCC-AACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGA-TGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAA-CCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGA-TGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAA-CCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGC-GATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAA-CCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGA-TGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCAT-TACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATCTATTGCTCACAGCTGCTCCAAGTGCTTG-CATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from CESAR GTGATGCTGCAT-TACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATCTATTGCTCACAGCTGCTCCAAGTGCTT-GCATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Spaln_aa2Genome GTGATGCTGCAT-TACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATcTATTGCTCACAGCTGCTCCAAGTGCTTGC-ATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Spaln_nt2Genome GTGATGCTGCAT-TACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATCTATTGCTCACAGCTGCTCCAAGTGCTTG-CATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Pairagon GTGATGCTGCAT-TACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATCTATTGCTCACAGCTGCTCCAAGTGCTTG-CATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATCTATTGCTCACAGCTGCTCCAAGTGCTTGCATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATCTATTGCTCACAGCTGCTCCAAGTGCTTGCATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATCTATTGCTCACAGCTGCTCCAAGTGCTTGCATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAA-CCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagagGGCCAACTGTCAGAAGAGGAGAAACGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAG-GCCAGACGCCAGTGATggtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAA-CCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagagGGCCAACTGTCAGAAGAGGAGAAACGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGA-GGCCAGACGCCAGTGATggtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAACGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAAC-CAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAACGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAG-GCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAAC-CAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAACGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAG-GCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAACGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGA---GAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAA--CGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGG-CCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAACGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATG-GAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtgagcttctattgttcatatggaccctaatatactcttttactctgtagcTACTTGCTGCACATTTACATGCGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGA-TCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACtggtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from CESAR cTATTTGCTGCACATTTTCATG-GAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtgagcttctattgttcatatggaccctaatatactcttttactctgtagcTACTTGCTGCACATTTACATGCGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGA-TCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACtggtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATG-GAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGcGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGAT-CTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATG-GAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGCGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGA-TCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Pairagon CTATTTGCTGCACATTTTCATG-GAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGCGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGA-TCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATG-GAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTG--ATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGCGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGAT---CTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATG-GAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTG--ATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGCGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGAT---CTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from GeneWise -----TTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGCGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATCTC-CGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCAATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg #### Cabp2_ID289_4 --> 2 - 1 Original Alignment agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATC-GGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCCGGGTACCGGGAGCTGGGTGCCTGCATGCGGA-ACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTagtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from CESAR agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATC-GGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCCGGGTACCGGGAGCTGGGTGCCTGCATGCGG-AACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTagtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Spaln_aa2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCCGGGTACCGGGAGCTGGGTGCCTGCATGCGGAACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Spaln_nt2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACAT-CGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCCGGGTACCGGGAGCTGGGTGCCTGCATGCGGA-ACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Pairagon AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACAT-CGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCCGGGTACCGGGAGCTGGGTGCCTGCATGCGGA-ACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Exonerate_protein2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCCGGGTACCGGGAGCTGGGTGCCTGCATGCGGAACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Exonerate_coding2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCCGGGTACCGGGAGCTGGGTGCCTGCATGCGGAACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from GeneWise CTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCCGGGTACCGGGAGCTGGGTGCCTGCATGCGGAACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaataggtGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGCATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTG-GAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaataggtGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGCATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGT-GGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGcATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGG-AGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGCATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTG-GAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGCATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTG-GAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGC--GTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGCATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGG---AGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTG-ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGC--GTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGCATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGG---AGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGCATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAG---GACAGGGATGGACGGATCACG-GTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg agaacagtaagaaagaagggtaaacatgattaacatgcacttttttatagTTTGACAAGGAGGACAGGGATGGATGGATCATGCGTGGTGGAGCTGCGCCAGGCTGTGCCAG-TCTGCTAGGGGAACCACTAGAGGGTACTGAAGTGGATGAAATGTTACGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtgagtaaccctacatacccctcacgcatgcctgtatactgtgaagatct Alignment from CESAR TTTGACAAG---GACAGGGATGGACGGATCACG-GTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg agaacagtaagaaagaagggtaaacatgattaacatgcacttttttatagTTTGACAAGGAGGACAGGGATGGATGGATCATGCGTGGTGGAGCTGCGCCAGGCTGTGCCA-GTCTGCTAGGGGAACCACTAGAGGGTACTGAAGTGGATGAAATGTTACGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtgagtaaccctacatacccctcacgcatgcctgtatactgtgaagatct Alignment from Spaln_aa2Genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG agaacagtaagaaagaagggtaaacatgattaacatgcacttttttatagTTTGACAAGGAGGACAGGGATGGATGGATCATGCGTGGTGGAGCTGCGCCAGGCTGTGCCAGTCTGCTAGGGGAACCACTAGAGGGTACTGAAGTGGATGAAATGTTACGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtgagtaaccctacatacccctcacgcatgcctgtatactgtgaagatct Alignment from Spaln_nt2Genome TTTGACAAGGA---CAGGGATGGACGGATCACG-GTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACG agaacagtaagaaagaagggtaaacatgattaacatgcacttttttatagTTTGACAAGGAGGACAGGGATGGATGGATCATGCGTGGTGGAGCTGCGCCAGGCTGTGCCAG-TCTGCTAGGGGAACCACTAGAGGGTACTGAAGTGGATGAAATGTTACGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtgagtaaccctacatacccctcacgcatgcctgtatactgtgaagatct Alignment from Pairagon TTTGACA---AGGACAGGGATGGACGGATCACG-GTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT---AGACTTTGACG agaacagtaagaaagaagggtaaacatgattaacatgcacttttttatagTTTGACAAGGAGGACAGGGATGGATGGATCATGCGTGGTGGAGCTGCGCCAGGCTGTGCCAG-TCTGCTAGGGGAACCACTAGAGGGTACTGAAGTGGATGAAATGTTACGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtgagtaaccctacatacccctcacgcatgcctgtatactgtgaagatct Alignment from Exonerate_protein2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG agaacagtaagaaagaagggtaaacatgattaacatgcacttttttatagTTTGACAAGGAGGACAGGGATGGATGGATCATGCGTGGTGGAGCTGCGCCAGGCTGTGCCAGTCTGCTAGGGGAACCACTAGAGGGTACTGAAGTGGATGAAATGTTACGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtgagtaaccctacatacccctcacgcatgcctgtatactgtgaagatct Alignment from Exonerate_coding2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC agaacagtaagaaagaagggtaaacatgattaacatgcacttttttatagTTTGACAAGGAGGACAGGGATGGATGGATCATGCGTGGTGGAGCTGCGCCAGGCTGTGCCAGTCTGCTAGGGGAACCACTAGAGGGTACTGAAGTGGATGAAATGTTACGCAAAATGGACCTCAATGGGGATGGGACCATAGAAgagtttgatggtgagtaaccctacatacccctcacgcatgcctgtatactgtgaagatct Alignment from GeneWise TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGAC agaacagtaagaaagaagggtaaacatgattaacatgcacttttttatagTTTGACAAGGAGGACAGGGATGGATGGATCATGCGTGGTGGAGCTGCGCCAGGCTGTGCCAGTCTGCTAGGGGAACCACTAGAGGGTACTGAAGTGGATGAAATGTTACGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtgagtaaccctacatacccctcacgcatgcctgtatactgtgaagatct #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAAC-GGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATCGGGAAGCTAGGGCTGGTGGAATTCAACATCC-ATGGAACCATATCCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from CESAR CGAGATGGCAAC-GGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATCGGGAAGCTAGGGCTGGTGGAATTCAACATC-CATGGAACCATATCCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagcgagATGGAA---ATCGGGAAGCTAGGGCTGGTGGAATTCAACATCCA-TGGAACCATATCCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Spaln_nt2Genome CGAGATGGCAA-CGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATCGGGAAGCTAGGGCTGGTGGAATTCAACATCC-ATGGAACCATATCCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Pairagon CGAGATGGCAA-CGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATCGGGAAGCTAGGGCTGGTGGAATTCAACATCC-ATGGAACCATATCCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATCGGGAAGCTAGGGCTGGTGGAATTCAACATCCATGGAACCATATCCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Exonerate_coding2genome ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagcgagatggaaatcgggaagctagggctggtggaattcaacatccatggaaccatatccgaaattatctggtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATCGGGAAGCTAGGGCTGGTGGAATTCAACATCCATGGAACCATATCCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAAC-CCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttttgaggcacctcaaacaagggccaagacttgcgtctgccttcctacagGAACTGATGTCAAACCCCCCAATTCATTGTAGATGGAGCCACCC-AACAGACATCTGCCAGGGAGCACTAggtcagtagatgtccctaggggtggggtgccgggtggcttgatctatgctc Alignment from CESAR GAACTGATGTCAAAC-CCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttttgaggcacctcaaacaagggccaagacttgcgtctgccttcctacagGAACTGATGTCAAACCCCCCAATTCATTGTAGATGGAGCCACCC-AACAGACATCTGCCAGGGAGCACTAggtcagtagatgtccctaggggtggggtgccgggtggcttgatctatgctc Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCC-CAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacctcaaacaagggccaagacttgcgtctgccttcctacagGAACTGATGTCAAACCCCcCAATTCATTGTAGATGGAGCCACCCA-ACAGACATCTGCCAGGGAGCACTAGgtcagtagatgtccctaggggtggggtgccgggtggcttgatctatgctc Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCC-AGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacctcaaacaagggccaagacttgcgtctgccttcctacagGAACTGATGTCAAACCCCCCAATTCATTGTAGATGGAGCCACCC-AACAGACATCTGCCAGGGAGCACTAGgtcagtagatgtccctaggggtggggtgccgggtggcttgatctatgctc Alignment from Pairagon GAACTGATGTCAAA-CCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacctcaaacaagggccaagacttgcgtctgccttcctacagGAACTGATGTCAAACCCCCCAATTCATTGTAGATGGAGCCACCC-AACAGACATCTGCCAGGGAGCACTAGgtcagtagatgtccctaggggtggggtgccgggtggcttgatctatgctc Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacctcaaacaagggccaagacttgcgtctgccttcctacagGAACTGATGTCAAACCCCCCAATTCATTGTAGATGGAGCCACCCAACAGACATCTGCCAGGGAGCACTAGgtcagtagatgtccctaggggtggggtgccgggtggcttgatctatgctc Alignment from Exonerate_coding2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacctcaaacaagggccaagacttgcgtctgccttcctacagGAACTGATGTCAAACCCCCCAATTCATTGTAGATGGAGCCACCCAACAGACATCTGCCAGGGAGCACTAGgtcagtagatgtccctaggggtggggtgccgggtggcttgatctatgctc Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacctcaaacaagggccaagacttgcgtctgccttcctacagGAACTGATGTCAAACCCCCCAATTCATTGTAGATGGAGCCACCCAACAGACATCTGCCAGGGAGCACTAGgtcagtagatgtccctaggggtggggtgccgggtggcttgatctatgctc #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGC-CTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG---CAGTGTGGCCCTGGAAGACGGGGCGCAGGTGGCACTTCTAG-GCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGC-CTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG---CAGTGTGGCCCTGGAAGACGGGGCGCAGGTGGCACTTCTA-GGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG---CAGTGTGGCCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCC-TGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG---CAGTGTGGCCCTGGAAGACGGGGCGCAGGTGGCACTTCTAG-GCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGG---CCAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGG-CCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG---CAGTGTGGCCCTGGAAGACGGGGCGCAGGTGGCACTTCTAG-GCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTG---GCCAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG---CAGTGTGGCCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG---CAGTGTGGCCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTG---CAGTGTGGCCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg #### Carns1_ID386_6 --> 2 - 0 Original Alignment CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtgagctgtactcagagtgtcacctcttcatcaggaGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from CESAR CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtaaggtgtactcagagtgtcacctcttcatcaggaGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGT-GCAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Spaln_aa2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagctgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGCAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Spaln_nt2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT-ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagctgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Pairagon CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagctgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Exonerate_protein2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagctgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGCAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Exonerate_coding2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagctgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGCAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from GeneWise CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTG---CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagctgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGAT---CCAGGGTGCAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTG-CTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGA-TGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactggaaaccctcttgtgttttcaggaGGTCCTCCACCTGG Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTG-CTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAG-ATGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactcagagtgtcacctcttcatcaggaGGTCCTCCACCTGG Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGATGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactggaaaccctcttgtgttttcagGAGGTCCTCCACCTGG Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGC-TGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCC----------------------------------TTACCAGGCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGA-TGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGGTAAGGTGTACTGGAAACCCTCTTGTGTTTTCAGGAGGTCCTCCACCTGG Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTG-CTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGA-TGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactggaaaccctcttgtgttttcagGAGGTCCTCCACCTGG Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGATGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactggaaaccctcttgtgttttcagGAGGTCCTCCACCTGG Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGATGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactggaaaccctcttgtgttttcagGAGGTCCTCCACCTGG Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGATGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactggaaaccctcttgtgttttcagGAGGTCCTCCACCTGG #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCAT-GCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACCGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCC-TGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCAT-GCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACCGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGC-CTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACCGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCAT-GCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACCGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCC-TGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCA-TGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACCGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCC-TGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCAT-GCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGC--CGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACCGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCT---GGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGC---TACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCAC--CGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCT-GGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTG---GGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCAC---CGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACC-TTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcaggcTGCCCTGGGGCAGAGGTGACCCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGC-GGAGGGTGGGGTTCAAAGCCCTggtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACC-TTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcaggcTGCCCTGGGGCAGAGGTGACCCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTG-CGGAGGGTGGGGTTCAAAGCCCTggtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTG-TGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCCTTgTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCG-GAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCT-TGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGC-GGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGA-CCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGC-GGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCGGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTT---GTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACC--CTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCG-GAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCGGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCA-GTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgaggactataggctttgtcactgaaaatttgtttattttcattatagaaTGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCACGTC---AAGCTGATTGCCTTGGGCTTGGAGTACTTTTATG-CCCATCGAATAACCTGggtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from CESAR aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgaggactataggctttgtcactgaaaatttgtttattttcattatagaaTGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCA--CGTCAAGCTGATTGCCTTGGGCTTGGAGTACTTTTAT-GCCCATCGAATAACCTGggtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAAC---CTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAC--GTCAAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGCCCATCGAATAACCTGGGTAAgtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCA--CGTCAAGCTGATTGCCTTGGGCTTGGAGTACTTTTATG-CCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Pairagon AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCA--CGTCAAGCTGATTGCCTTGGGCTTGGAGTACTTTTATG-CCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCA---CGTCAAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGCCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCA---CGTCAAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGCCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCA---CGTCAAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGCCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTG-CTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagacTTTTTCATTATGGTCATGGCA---CCTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACT-ATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagacTTTTTCATTATGGTCATGGCA--CCTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATAC-TATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCAC--CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTA-TTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA--CCTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACT-ATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA--CCTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACT-ATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCACCT---GGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA--CCTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTA-TTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCAC--CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTA-TTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTG-AGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccccccttgcctcatcactaacttgacttaacttattgctatttttttagtATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCC-CACCCTCATGTTCACCTGCCTCtgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTG-AGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccccccttgcctcatcactaacttgacttaacttattgctatttttttagtATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTCAGTGGGTCATTACCATCAATCACAGCCATC-CCACCCTCATGTTCACCTGCCTCtgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTG-AGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTcAGTGGGTCATTACCATCAATCACAGCCATCCC-ACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTG-AGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCC-CACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTC-TGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCC-CACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCCCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Exonerate_coding2genome ccccccttgcctcatcactaacttgacttaacttattgctatttttttagtatcctgactagtgtccatgaagtagctgggacccttcagtgggtcattaccatcaatcacagccatcccaccctcatgttcacctgcctctgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCCCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCC-AAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagtcCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCC-GTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAggtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCC-AAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagtcCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACC-CGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAggtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGAC-CCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACcCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCG-TTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGA-CCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCC-GTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGA-CCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCC-GTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAA---GCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCC--CAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCG-TTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTC---CAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCG---TTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTT-GAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagaGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTCGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAAC-GTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTT-GAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagaGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTCGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAA-CGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTT-GAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTcGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACG-TTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTT-GAGATCCAGAGCCAGCAGCTGCGTG------AGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTCGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAAC-GTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTT-GAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTCGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAAC-GTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTT-GAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAG-----TTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTCGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTT-GAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAG-----TTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTCGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAG------TTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTCGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCT-GAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCACGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGAC-GCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from CESAR AATGCCACACTGGTGGCT-GAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCACGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGA-CGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCT-GAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAcGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACG-CTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCT-GAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCACGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGAC-GCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Pairagon AATGCCACACTGGTGGC-TGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCACGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGAC-GCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCACGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCACGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from GeneWise AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCACGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACT-GGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTT---GCTCGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGA-ACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCT--CGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGA-ACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGAACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG-CGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGA-ACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACT-----GGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG----------CTTGCTCGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGA-ACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGAACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGAACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGAACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacaggTACCGGCATCTGCGAGCAACGTCTAGAAGCCGAGCTGCAGGCGACAT-TGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from CESAR gTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacaggTACCGGCATCTGCGAGCAACGTCTAGAAGCCGAGCTGCAGGCGACA-TTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Spaln_aa2Genome GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGcGAGCAACGTCTAGAAGCCGAGCTGCAGGCGACATT-GCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Spaln_nt2Genome GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGCGAGCAACGTCTAGAAGCCGAGCTGCAGGCGACAT-TGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Pairagon GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGCGAGCAACGTCTAGAAGCCGAGCTGCAGGCGACAT-TGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGCGAGCAACGTCTAGAAGCCGAGCTGCAGGCGACATTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGCGAGCAACGTCTAGAAGCCGAGCTGCAGGCGACATTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGCGAGCAACGTCTAGAAGCCGAGCTGCAGGCGACATTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCA-GTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG tggagtgggagaggatgaacagacagaatgtcattgttgttctcctttagcaTCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCACGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAA---C-TATG------GCACGGCTTGGCAGCCAGgtaagatcctctggtattcttatttgctgtatgtcccttgtttccaagac Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCA-GTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG tggagtgggagaggatgaacagacagaatgtcattgttgttctcctttagcaTCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCACGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAACTA----------TGGCACGGCTTGGCAGCCAGgtaagatcctctggtattcttatttgctgtatgtcccttgtttccaagac Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCA-GTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG tggagtgggagaggatgaacagacagaatgtcattgttgttctcctttagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAcGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAACTATG----------GCACGGCTTGGCAGCCAGgtaagatcctctggtattcttatttgctgtatgtcccttgtttccaagac Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCA-GTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG tggagtgggagaggatgaacagacagaatgtcattgttgttctcctttagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCACGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAACTA----------TGGCACGGCTTGGCAGCCAGgtaagatcctctggtattcttatttgctgtatgtcccttgtttccaagac Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCA-GTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG tggagtgggagaggatgaacagacagaatgtcattgttgttctcctttagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCACGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAACTAT----------GGCACGGCTTGGCAGCCAGgtaagatcctctggtattcttatttgctgtatgtcccttgtttccaagac Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCA-GTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTA---CAGATGCTTCAGGCACA tggagtgggagaggatgaacagacagaatgtcattgttgttctcctttagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCACGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAACTATGGCACGGCTTGGCAGCCAGgtaagatcctctggtattcttatttgctgtatgtcccttgtttccaagac Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCA-GTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTA---CAGATGCTTCAGGCACA tggagtgggagaggatgaacagacagaatgtcattgttgttctcctttagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCACGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAACTATGGCACGGCTTGGCAGCCAGgtaagatcctctggtattcttatttgctgtatgtcccttgtttccaagac Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG tggagtgggagaggatgaacagacagaatgtcattgttgttctcctttagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCA---------CGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAACTATGGCACGGCTTGGCAGCCAGgtaagatcctctggtattcttatttgctgtatgtcccttgtttccaagac #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAG-CTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCCTGGAGCAGCTAGTGGAAGAGAATGTGGAGC-GGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from CESAR GACCTGGACTCTCTGCGGCATCAG-CTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCCTGGAGCAGCTAGTGGAAGAGAATGTGGAG-CGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGC-TGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCCTGGAGCAGCTAGTGGAAGAGAATGTGGAGC-GGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAG-CTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCCTGGAGCAGCTAGTGGAAGAGAATGTGGAGC-GGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt #### Ccdc88b_ID1838_11 --> 0 - 0 Original Alignment GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTC-CTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcaaccccttcagcaaggctgagggctcctctccttgcagGAGGAGCGGGTCCTCTCTGAAGCTGTAGAGGCCTCAACAGTCCCTTCTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCT-AGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtaaggtgtcctgcatgttgcaagttgggaccaagatttgacttttaaag Alignment from CESAR GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTC-CTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcaaccccttcagcaaggctgagggctcctctccttgcagGAGGAGCGGGTCCTCTCTGAAGCTGTAGAGGCCTCAACAGTCCCTTCTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGC-TAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtaaggtgtcctgcatgttgcaagttgggaccaagatttgacttttaaag Alignment from Spaln_aa2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcaaccccttcagcaaggctgagggctcctctccttgcagGAGGAGCGGGTCCTCTCTGAAGCTGTAGAGGCCTCAACAGTCCCTTCTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtaaggtgtcctgcatgttgcaagttgggaccaagatttgacttttaaag Alignment from Spaln_nt2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCC-TGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcaaccccttcagcaaggctgagggctcctctccttgcagGAGGAGCGGGTCCTCTCTGAAGCTGTAGAGGCCTCAACAGTCCCTTCTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCT-AGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtaaggtgtcctgcatgttgcaagttgggaccaagatttgacttttaaag Alignment from Pairagon GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGA-AGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcaaccccttcagcaaggctgagggctcctctccttgcagGAGGAGCGGGTCCTCTCTGAAGCTGTAGAGGCCTCAACAGTCCCTTCTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCT-AGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtaaggtgtcctgcatgttgcaagttgggaccaagatttgacttttaaag Alignment from Exonerate_protein2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcaaccccttcagcaaggctgagggctcctctccttgcagGAGGAGCGGGTCCTCTCTGAAGCTGTAGAGGCCTCAACAGTCCCTTCTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtaaggtgtcctgcatgttgcaagttgggaccaagatttgacttttaaag Alignment from Exonerate_coding2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcaaccccttcagcaaggctgagggctcctctccttgcagGAGGAGCGGGTCCTCTCTGAAGCTGTAGAGGCCTCAACAGTCCCTTCTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtaaggtgtcctgcatgttgcaagttgggaccaagatttgacttttaaag Alignment from GeneWise GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG ctgaagagactcaaccccttcagcaaggctgagggctcctctccttgcagGAGGAGCGGGTCCTCTCTGAAGCTGTAGAGGCCTCAACAGTCCCTTCTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtaaggtgtcctgcatgttgcaagttgggaccaagatttgacttttaaag #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCC-GGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAG---GAGGCTCGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCT-TCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGG--AGGCTCGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGC-TTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAGGCTC--GGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTT-CGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGA--GGCTCGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCT-TCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGA--GGCTCGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCT-TCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAGGCTCGGTCACTTGCCCCGCCT---GCAGGAAGAACTTCGGCGCTTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Exonerate_coding2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAG--GCTCGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTT-CGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAGGCTCGGTCACTTGCCCCGCCTGCAGGAAGA---ACTTCGGCGCTTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAA-CTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagaGAAGAGAAGGCTGAGCAGCCTGCTAGACTCCCATGCAGAGGTTCAG---TTGGATGCCG-AATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from CESAR gGAGGAGAAGGCTGAGCAA-CTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagaGAAGAGAAGGCTGAGCAGCCTGCTAGACTCCCATGCAGAGGTTCAG---TTGGATGCCG-AATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCCTGCTAGACTCCCATGCAGA---GGTTCAGTTGGATGCCGAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAAC-TGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCCTGCTAGACTCCCATGCAGAGGTTCAG---TTGGATGCCG-AATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Pairagon GGAGGAGAAGGCTGAGCAA-CTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCCTGCTAGACTCCCATGCAGAGGTTCAG---TTGGATGCCG-AATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCCTGCTAGACTCCCATGCAGA---GGTTCAGTTGGATGCCGAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Exonerate_coding2genome tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagagaagagaaggctgagcagcctgctagactcccatgcagaggttcagttggatgccgaattcgaagacttcgccaggaggtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGC---TTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAG------CCTGCTAGACTCCCATGCAGAGGTTCAGTTGGATGCCGAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAG-GCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCACTTGCTGCTACCTGAGCGCTCCTGCCAATGCG------GAGGGTGTCTCCCACCATT-AGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGgtgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAG-GCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCACTTGCTGCTACCTGAGCGCTCCTGCCAAT------GCGGAGGGTGTCTCCCACC-ATTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGgtgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCACTTGCTGCTACCTGAGCGCTCCTGCCAATGCGGA------GGGTGTCTCCCACCATTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAG-GCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCACTTGCTGCTACCTGAGCGCTCCTGCCAA------TGCGGAGGGTGTCTCCCACCAT-TAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAG-GCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCACTTGCTGCTACCTGAGCGCTCCTGCCAA------TGCGGAGGGTGTCTCCCACCAT-TAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCACTTGCTGCTACCTGAG------CGCTCCTGCCAATGCGGAGGGTGTCTCCCACCATTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCACTTGCTGCTACCTGAGCGCTCC-----TGCCAATGCGGAGGGTGTCTCCCACCA-TTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCACTTGCTGCTACCTGAGCGC------TCCTGCCAATGCGGAGGGTGTCTCCCACCATTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCCTTCTAATCCTATCAGCACCTCCAGACCTCCAGA-TACAGGGTGCGAGCCCTTCTCAggtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from CESAR GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCCTTCTAATCCTATCAGCACCTCCAGACCTCCAG-ATACAGGGTGCGAGCCCTTCTCAggtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCCTTCTAATCCTATCAGCACCTCCAGACCTCCAGATACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Spaln_nt2Genome GAGGAGCTACAGC-TGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCCTTCTAATCCTATCAGCACCTCCAGACCTCCAGA-TACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Pairagon GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCCTTCTAATCCTATCAGCACCTCCAGACCTCCAGAT-ACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Exonerate_protein2genome GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCCTTCTAATCCTATCAGCACCTCCAGACCTCCAGATACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Exonerate_coding2genome GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCCTTCTAATCCTATCAGCACCTCCAGACCTCCAGATACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from GeneWise -CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA-------------------------------------------------- acccagcagcacctattatggatatcttcccaattttacctctctcacaggaggagctacagCCTTCTAATCCTATCAGCACCTCCAGACCTCCAGATACAGGGTGCGAGCCCTTCTCAGGTGAGTCTTCTTACTTTTTTCTACCATTGCTCTCTGTTCTATATCCTTAT #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagtGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAA-GTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagtGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAA-AGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAAGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTC-GAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTC-AAAGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAA-GTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGT--CGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAAG---TGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGT--CGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAAG---TGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAAGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTT-CGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTG-CTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGctgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTT-CGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTG-CTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGctgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTC-GTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTG-CTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTT-CGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTG-CTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTT-CGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACT--GCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGC---TATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTT-CGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACT--GCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGC---TATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAG-CGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG aatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctctgcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGA-AGCTTTGCATTACTCGTTCCAGGATGAGGAGTTCTTAgtgaggaaccttgtttagtagaggggcgttacccagacagtgctgttctt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAG-CGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctctgcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTG-AAGCTTTGCATTACTCGTTCCAGGATGAGGAGTTCTTAgtgaggaaccttgtttagtagaggggcgttacccagacagtgctgttctt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAG-CGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG aatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctctgcagACAACCTGTCTCCGGGAAGAGcCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGAA-GCTTTGCATTACTCGTTCCAGGATGAGGAGTTCTTAgtgaggaaccttgtttagtagaggggcgttacccagacagtgctgttctt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGC-GAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG aatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctctgcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGA-AGCTTTGCATTACTCGTTCCAGGATGAGGAGTTCTTAgtgaggaaccttgtttagtagaggggcgttacccagacagtgctgttctt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAG-CGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG aatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctctgcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGAA-GCTTTGCATTACTCGTTCCAGGATGAGGAGTTCTTAgtgaggaaccttgtttagtagaggggcgttacccagacagtgctgttctt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG aatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctctgcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGAAGCTTTGCATTACTCGTTCCAGGATGAGGAGTTCTTAgtgaggaaccttgtttagtagaggggcgttacccagacagtgctgttctt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG aatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctctgcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGAAGCTTTGCATTACTCGTTCCAGGATGAGGAGTTCTTAgtgaggaaccttgtttagtagaggggcgttacccagacagtgctgttctt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG aatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctctgcagACAACCTGTCTCCGGGAAGAGCCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGAAGCTTTGCATTACTCGTTCCAGGATGAGGAGTTCTTAgtgaggaaccttgtttagtagaggggcgttacccagacagtgctgttctt #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagaGATGTGAAGCCACGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTG-CTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from CESAR gGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagaGATGTGAAGCCACGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCT-GCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Spaln_aa2Genome GGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCAcGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGC-TTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Spaln_nt2Genome GGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCACGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTG-CTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Pairagon GGATGTGAAGCC-TGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCACGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTG-CTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCACGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCACGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCACGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAG-CCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagagCACCTGCATGGTCCATTACAACCCACAGGAGCTTGTGCAGCTTCAGAAAGAAGTTC-GGTTCTTCAGGAGAAACTGGCGggtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCC-CAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagagCACCTGCATGGTCCATTACAACCCACAGGAGCTTGTGCAGCTTCAGAAAGAAGTT-CGGTTCTTCAGGAGAAACTGGCGggtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCCACAGGAGCTTGTGCAGCTTCAGAAAGAAGTTCGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCC-CAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCCACAGGAGCTTGTGCAGCTTCAGAAAGAAGTTC-GGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCC-CAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCCACAGGAGCTTGTGCAGCTTCAGAAAGAAGTTC-GGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCCACAGGAGCTTGTGCAGCTTCAGAAAGAAGTTCGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCCACAGGAGCTTGTGCAGCTTCAGAAAGAAGTTCGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCCACAGGAGCTTGTGCAGCTTCAGAAAGAAGTTCGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGG-GAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAG-GGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAcAGCCCTGCCCCAAACATCCAGTTACAGCAGGG-AAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGG-GAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGG-GAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCA-GCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCACGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGG-CTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCA-GCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCACGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGG-CTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCA-GCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAcGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGC-TGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGC-CAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCACGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAG-AGGCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGC-CAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCACGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAG-AGGCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCACGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCACGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCACGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAA-GAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagaATCAGTGTTGGGAAACGAGGAGGTTCTATGCCGATTGCAGGCGGTAA-CCAGCAGCTGAGTCGGGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from CESAR gATCAGTGTTGGGAAA-GAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagaATCAGTGTTGGGAAACGAGGAGGTTCTATGCCGATTGCAGGCG-GTAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAACGAGGAGGTTCTATGCCGATTGCAGGCGGTAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAA-GAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAACGAGGAGGTTCTATGCCGATTGCAGGCGG-TAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Pairagon GATCAGTGTTGGGAAA-GAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAACGAGGAGGTTCTATGCCGATTGCAGGCGG-TAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAACGAGGAGGTTCTATGCCGATTGCAGGCGGTAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAACGAGGAGGTTCTATGCCGATTGCAGGCGGTAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAACGAGGAGGTTCTATGCCGATTGCAGGCGGTAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GCTTCCTGTCG GTGCCGCGGCCCTCA-GGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTCTGTCAgtgagttgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCACTGTGTTCGTTGGGACTGGCAGCGGGTGTATG-TGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAaggtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from CESAR GCTTCCTGTCG GTGCCGCGGCCCTCA-GGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTCTGTCAgtaagttgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCACTGTGTTCGTTGGGACTGGCAGCGGGTGTAT-GTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAaggtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Spaln_aa2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagttgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCACTGTGTTCGTTGGGACTGGCAGCGGGTGTATGTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Spaln_nt2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAG-GTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagttgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCACTGTGTTCGTTGGGACTGGCAGCGGGTGTATG-TGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Pairagon GTGCCGCGGCCCTCAG---------------------------------------------------GTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GTG-----------AGTTGTGGGGGCTGGGCTGTGCATTTCCACCCACAGGTACGACAGCCATCACTGTGTTCGTTGGGACTGGCAGCGGGTGTATG-TGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Exonerate_protein2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagttgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCACTGTGTTCGTTGGGACTGGCAGCGGGTGTATGTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Exonerate_coding2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagttgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCACTGTGTTCGTTGGGACTGGCAGCGGGTGTATGTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from GeneWise GCTTCCTGTCGGTGCCG---------------------------------------CGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAGTGAGTTGTGGGGGCTGGGCTGTGCATTTCCACCCACAGGTACGACAGCCATCACTGTGTTCGTTGGGACTGGCAGCGGGTGTATGTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccaggGACCCCCAGTTTTCAGCCCACTCCCGTCTTGGCCCCAGATGTCATTCATG-CCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from CESAR gGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccaggGACCCCCAGTTTTCAGCCCACTCCCGTCTTGGCCCCAGATGTCATTCATG-CCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCcACTCCCGTCTTGGCCCCAGATGTCATTCATGC-CAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCCACTCCCGTCTTGGCCCCAGATGTCATTCATG-CCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Pairagon GGACCCCCAGTTCTCAG-CCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCCACTCCCGTCTTGGCCCCAGATGTCATTCATG-CCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCCACTCCCGTCTTGGCCCCAGATGTCATTCATGCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCCACTCCCGTCTTGGCCCCAGATGTCATTCATGCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCCACTCCCGTCTTGGCCCCAGATGTCATTCATGCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCC-GACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagaaAAGGATGAGTTTGAGATTCCTCGACCTGACAGACAACAGCCGGCGCCAGCTCT-CCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from CESAR agAAGGACGAGTTTGACATTCCC-GACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagaaAAGGATGAGTTTGAGATTCCTCGACCTGACAGACAACAGCCGGCGCCAGC-TCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGACAGACAACAGCCGGCGCCAGCTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCC-CGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGACAGACAACAGCCGGCGCCAGCT-CTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Pairagon AGAAGGACGAGTTTGACATTCC-CGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGACAGACAACAGCCGGCGCCAGCT-CTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGACAGACAACAGCCGGCGCCAGCTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGACAGACAACAGCCGGCGCCAGCTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGACAGACAACAGCCGGCGCCAGCTCTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCG-CCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccaggGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCCACCAACTTCATCCACCTGGTTCATGTGGGCC-TACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCG-CCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccaggGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCCACCAACTTCATCCACCTGGTTCATGTGG-GCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCCACCAACTTCATCCACCTGGTTCATGTGGGCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCC-CACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCCACCAACTTCATCCACCTGGTTCATGTGGG-CCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCG-CCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCCACCAACTTCATCCACCTGGTTCATGTGGG-CCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCCACCAACTTCATCCACCTGGTTCATGTGGGCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCCACCAACTTCATCCACCTGGTTCATGTGGGCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCCACCAACTTCATCCACCTGGTTCATGTGGGCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACCGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAA-AGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACCGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCA-AAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACCGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAAAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGC-GGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACCGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGT-CAAAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACCGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGT-CAAAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCC--ACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACCGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAAA---GACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAG-CGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCC--ACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACCGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAAA---GACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACCGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAAAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCA-CCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggacaaggcccctattggggttctatagactttgtttttgtatttgccagGCAATGAAGCCACCCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGC-GTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtaaatgaagccatggctaaactgtaacaaaacagtgcagtcaggaaggt Alignment from CESAR GCGATGAAGCCA-CCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggacaaggcccctattggggttctatagactttgtttttgtatttgccagGCAATGAAGCCACCCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTG-CGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtaaatgaagccatggctaaactgtaacaaaacagtgcagtcaggaaggt Alignment from Spaln_aa2Genome GCGATGAAGCCA-CCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggttctatagactttgtttttgtatttgccagGCAATGAAGCCAcCCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCG-TCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaaatgaagccatggctaaactgtaacaaaacagtgcagtcaggaaggt Alignment from Spaln_nt2Genome GCGATGAAGCCACC-TGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggttctatagactttgtttttgtatttgccagGCAATGAAGCCACCCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGC-GTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaaatgaagccatggctaaactgtaacaaaacagtgcagtcaggaaggt Alignment from Pairagon GCGATGAAGCCA-CCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggttctatagactttgtttttgtatttgccagGCAATGAAGCCACCCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGC-GTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaaatgaagccatggctaaactgtaacaaaacagtgcagtcaggaaggt Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggttctatagactttgtttttgtatttgccagGCAATGAAGCCACCCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaaatgaagccatggctaaactgtaacaaaacagtgcagtcaggaaggt Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggttctatagactttgtttttgtatttgccagGCAATGAAGCCACCCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaaatgaagccatggctaaactgtaacaaaacagtgcagtcaggaaggt Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggttctatagactttgtttttgtatttgccagGCAATGAAGCCACCCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaaatgaagccatggctaaactgtaacaaaacagtgcagtcaggaaggt #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAagtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from CESAR GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGA-GTGGAGGTTTAGAAagtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTcCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT-GGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTT-TGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Pairagon GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGA--GATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT---GGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGA--GATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT---GGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from GeneWise gttctcagtgggcagatacctaataccttcccctgtttccttttggacagggactgagtaaatcaacctctcctggtgcacctgtctcttgcaaattgcccaattggagtggaggtttagaaagtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactatttgggatgtagttgcaactttaactctctgtttctaacaggGCCCCTGAAAATGCCCCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAAGACGCCATCA-GAGGAAGCTGACAggtaagtatccccccttccaacaaaaacaattgatgtagtctccctgctag Alignment from CESAR gGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactatttgggatgtagttgcaactttaactctctgtttctaacaggGCCCCTGAAAATGCCCCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAAGACGCCA-TCAGAGGAAGCTGACAggtaagtatccccccttccaacaaaaacaattgatgtagtctccctgctag Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttgcaactttaactctctgtttctaacagGGCCCCTGAAAATGCCCCCCTAAAGcAGCAAAATGATCTATGCAAGCTCCAAAGACGCCATCAG-AGGAAGCTGACAGgtaagtatccccccttccaacaaaaacaattgatgtagtctccctgctag Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttgcaactttaactctctgtttctaacagGGCCCCTGAAAATGCCCCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAAGACGCCATC-AGAGGAAGCTGACAGgtaagtatccccccttccaacaaaaacaattgatgtagtctccctgctag Alignment from Pairagon GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttgcaactttaactctctgtttctaacagGGCCCCTGAAAATGCCCCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAAGACGCCATC-AGAGGAAGCTGACAGgtaagtatccccccttccaacaaaaacaattgatgtagtctccctgctag Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACA ttgagactatttgggatgtagttgcaactttaactctctgtttctaacagGGCCCCTGAAAATGCCCCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAAGACGCCATCAGAGGAAGCTGACAGgtaagtatccccccttccaacaaaaacaattgatgtagtctccctgctag Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACA ttgagactatttgggatgtagttgcaactttaactctctgtttctaacagGGCCCCTGAAAATGCCCCCCTAAAGCAGCAAAATGATCTATGCAAGCTCCAAAGACGCCATCAGAGGAAGCTGACAGgtaagtatccccccttccaacaaaaacaattgatgtagtctccctgctag Alignment from GeneWise ttgagactatttgggatgtagttgcaactttaactctctgtttctaacagggcccctgaaaatgcccccctaaagcagcaaaatgatctatgcaagctccaaagacgccatcagaggaagctgacaggtaagtatccccccttccaacaaaaacaattgatgtagtctccctgctag #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCG-TACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCACTACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGG-CTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCG-TACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCACTACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATG-GCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCG-TACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCAcTACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGC-TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCG-TACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCACTACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGG-CTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCG-TACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCACTACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGC-TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCG-TACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATG--GTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCACTACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGC---TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCG-TACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATG--GTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCACTACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGC---TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCACTACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGC-TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtGACAGGGACCCAGCTCAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAG-GAACAAAGGAGAAAAGGGGGATAAAggtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from CESAR gtGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtGACAGGGACCCAGCTCAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAG-GAACAAAGGAGAAAAGGGGGATAAAggtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Spaln_aa2Genome GGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtgacagGGACCCAGCTCAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGAAC-AAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTG-GACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTCAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGA-GGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Pairagon GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTCAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGA-GGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTCAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTCAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from GeneWise GGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAGGT- ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtgacagGGACCCAGCTCAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGAACAAAGGAGAAAAGGGGGATAAAGGTGAgtagtggagtgtgaactggggtgctggggcttaggttctgaaaact #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATC-CCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcccgcctcctgttctttctcctttgcctcggcttttctcagccGCTGGTTTGTCGTCCACCCCCAGGCCCAGCAGGTCCACCTGGACCACCAGGTC-TCGAGGGCCTCCAGGGGTTTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAagtaactaccctggaggtgtgcctcctgtgcccctccagagaaacttagtc Alignment from CESAR ccGCTGGTTTGTCCTCCATC-CCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcccgcctcctgttctttctcctttgcctcggcttttctcagccGCTGGTTTGTCGTCCACCCCCAGGCCCAGCAGGTCCACCTGGACCACCAG-GTCTCGAGGGCCTCCAGGGGTTTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAagtaactaccctggaggtgtgcctcctgtgcccctccagagaaacttagtc Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcccgcctcctgttctttctcctttgcctcggcttttctcagCCGCTGGTTTGTCGTCCACCCCCAGGCCCAGCAGGTCCACCTGGACCACCAGGTCTCGAGGGCCTCCAGGGGTTTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgtaactaccctggaggtgtgcctcctgtgcccctccagagaaacttagtc Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCC-AGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcccgcctcctgttctttctcctttgcctcggcttttctcagCCGCTGGTTTGTCGTCCACCCCCAGGCCCAGCAGGTCCACCTGGACCACCAGGT-CTCGAGGGCCTCCAGGGGTTTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgtaactaccctggaggtgtgcctcctgtgcccctccagagaaacttagtc Alignment from Pairagon CCGCTGGTTTGTCCTCCA-TCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcccgcctcctgttctttctcctttgcctcggcttttctcagCCGCTGGTTTGTCGTCCACCCCCAGGCCCAGCAGGTCCACCTGGACCACCAGGT-CTCGAGGGCCTCCAGGGGTTTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgtaactaccctggaggtgtgcctcctgtgcccctccagagaaacttagtc Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcccgcctcctgttctttctcctttgcctcggcttttctcagCCGCTGGTTTGTCGTCCACCCCCAGGCCCAGCAGGTCCACCTGGACCACCAGGTCTCGAGGGCCTCCAGGGGTTTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgtaactaccctggaggtgtgcctcctgtgcccctccagagaaacttagtc Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcccgcctcctgttctttctcctttgcctcggcttttctcagCCGCTGGTTTGTCGTCCACCCCCAGGCCCAGCAGGTCCACCTGGACCACCAGGTCTCGAGGGCCTCCAGGGGTTTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgtaactaccctggaggtgtgcctcctgtgcccctccagagaaacttagtc Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcccgcctcctgttctttctcctttgcctcggcttttctcagCCGCTGGTTTGTCGTCCACCCCCAGGCCCAGCAGGTCCACCTGGACCACCAGGTCTCGAGGGCCTCCAGGGGTTTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgtaactaccctggaggtgtgcctcctgtgcccctccagagaaacttagtc #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCC-CCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acagacacattgggctcattgactctaatgtcccatccccccatcaccaggaAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGT-ACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCC-CCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acagacacattgggctcattgactctaatgtcccatccccccatcaccaggaAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGG-TACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCC-CAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGT-ACTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCC-CAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTA-----TGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGT---------------ACTACTGTCTGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCCTCAGGGCCATTAGGCGTCAGTGGAGAAGGGTACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGG-GTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt cagctctttctggctgcaggcttgatcacttttctctttttcttttaaaggtGGCAACATCAGGACATATCTCCTAGGGCGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCA-CACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTAGTTAGCTACCTACGGtgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGG-GTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt cagctctttctggctgcaggcttgatcacttttctctttttcttttaaaggtGGCAACATCAGGACATATCTCCTAGGGCGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTC-ACACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTAGTTAGCTACCTACGGtgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGG-GTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGcGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCAC-ACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTAGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGG-GTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGCGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCA-CACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTAGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGG-GTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGCGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCA-CACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTAGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGCGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCACACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTAGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGCGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCACACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTAGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGCGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCACACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTAGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGG-CCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tatttttggtgagataaggagctgaattgtttgtattcttattttcatagggGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCC-GGATATACAGCACTACATTGCAGAATACATGCAAagtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCC-CCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tatttttggtgagataaggagctgaattgtttgtattcttattttcatagggGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGC-CGGATATACAGCACTACATTGCAGAATACATGCAAagtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCA-GGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAgGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCG-GATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCA-GGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCC-GGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Pairagon GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGG-CCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCC-GGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from GeneWise GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGC-TCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTCTCAGCCTGCAAAGACAAGAGCGTTCGAATCA-TGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGC-TCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTCTCAGCCTGCAAAGACAAGAGCGTTCGAATCA-TGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTCTCAGCCTGCAAAGACAAGAGCGTTCGAATCATGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTG-CTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTCTCAGCCTGCAAAGACAAGAGCGTTCGAATCAT-GATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTG-CTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTCTCAGCCTGCAAAGACAAGAGCGTTCGAATCAT-GATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTCTCAGCCTGCAAAGACAAGAGCGTTCGAATCATGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTCTCAGCCTGCAAAGACAAGAGCGTTCGAATCATGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTCTCAGCCTGCAAAGACAAGAGCGTTCGAATCATGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGAC-GGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATCGGAAAGGTGTTCTCCACAGGTTTCAGCCACA-GAGTGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from CESAR GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGAC-GGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATCGGAAAGGTGTTCTCCACAGGTTTCAGCCAC-AGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Spaln_aa2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATCGGAAAGGTGTTCTCCACAGGTTTCAGCCACAGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Spaln_nt2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGA-CGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATCGGAAAGGTGTTCTCCACAGGTTTCAGCCACA-GAGTGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Pairagon GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGA-CGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATCGGAAAGGTGTTCTCCACAGGTTTCAGCCACA-GAGTGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Exonerate_protein2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATCGGAAAGGTGTTCTCCACAGGTTTCAGCCACAGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Exonerate_coding2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATCGGAAAGGTGTTCTCCACAGGTTTCAGCCACAGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from GeneWise GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATCGGAAAGGTGTTCTCCACAGGTTTCAGCCACAGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCC-ATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGGTC-TCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from CESAR GAAAACCTTGAGGAG-CCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGGTC-TCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Spaln_aa2Genome GAAAACCTTGAGGAG-CCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGcCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGGTCT-CTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCC-ATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGGTCT-CTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Pairagon GAAAACCTTGAGGAG-CCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGGTCT-CTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGGTCTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCC---CATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAG--CCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGGTCT-CTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGGTCTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAA-GAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCACTTCCTGAACACATTTGCAAGCAAACGAACCCCAAAGGGGTATGGGCAGCATGCCGA-GAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCaggtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAA-GAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAACGAACCCCAAAGGGGTATGGGCAGCATGCCGA-GAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCaggtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAACGAACCCCAAAGGGGTATGGGCAGCATGCCGAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAA-GAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAACGAACCCCAAAGGGGTATGGGCAGCATGCCGA-GAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAA-GAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCACTTCCTGAACACATTTGCAAGCAAACGAACCCCAAAGGGGTATGGGCAGCATGCC-GAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAACGAACCCCAAAGGGGTATGGGCAGCATGCCGAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAACGAACCCCAAAGGGGTATGGGCAGCATGCCGAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCACTTCCTGAACACATTTGCAAGCAAACGAACCCCAAAGGGGTATGGGCAGCATGCCGAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCA-GTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACACGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGC-CGGAGTGACTTGTAGGaggtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCA-GTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACACGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTG-CCGGAGTGACTTGTAGGaggtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCA-GTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAcGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCC-GGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCA-GTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACACGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGC-CGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCA-GTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACACGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGC-CGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACACGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACACGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACACGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTC-TCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtggaacttgtacgtgtttcctcttcttttcttcctattgcccacagagCGTCTTGGTCCCCCACGTGACGTCACGGCATCCTGCAACTCTTCCCATTGTACTGTTCTCATGGGCCCCACCCTCCACCTGGGCATCCCTGACGGCAC-GGACTATCAGTTCGAGGTCCAGTGGCAAgtttgtggggcttctcctttctgggaaggcacaagggaggatatgccaag Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTC-TCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtggaacttgtacgtgtttcctcttcttttcttcctattgcccacagagCGTCTTGGTCCCCCACGTGACGTCACGGCATCCTGCAACTCTTCCCATTGTACTGTTCTCATGGGCCCCACCCTCCACCTGGGCATCCCTGACGGCAC-GGACTATCAGTTCGAGGTCCAGTGGCAAgtttgtggggcttctcctttctgggaaggcacaagggaggatatgccaag Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTC-TCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtggaacttgtacgtgtttcctcttcttttcttcctattgcccacagAGCGTCTTGGTCCCCCACGTGACGTCACGGCATCCTGCAACTCTTCCCATTGTACTGTTcTCATGGGCCCCACCCTCCACCTGGGCATCCCTGACGGCACG-GACTATCAGTTCGAGGTCCAGTGGCAAgtttgtggggcttctcctttctgggaaggcacaagggaggatatgccaag Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGT-CTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtggaacttgtacgtgtttcctcttcttttcttcctattgcccacagAGCGTCTTGGTCCCCCACGTGACGTCACGGCATCCTGCAACTCTTCCCATTGTACTGTTCTCATGGGCCCCACCCTCCACCTGGGCATCCCTGACGGCAC-GGACTATCAGTTCGAGGTCCAGTGGCAAgtttgtggggcttctcctttctgggaaggcacaagggaggatatgccaag Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCG-TCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtggaacttgtacgtgtttcctcttcttttcttcctattgcccacagAGCGTCTTGGTCCCCCACGTGACGTCACGGCATCCTGCAACTCTTCCCATTGTACTGTTCTCATGGGCCCCACCCTCCACCTGGGCATCCCTGACGGCAC-GGACTATCAGTTCGAGGTCCAGTGGCAAgtttgtggggcttctcctttctgggaaggcacaagggaggatatgccaag Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTC-TCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCC--CGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtggaacttgtacgtgtttcctcttcttttcttcctattgcccacagAGCGTCTTGGTCCCCCACGTGACGTCACGGCATCCTGCAACTCTTCCCATTGTACTGTTCTCATGGGCCCCACCCTCCACCTGGGCATCCCTGACGGCACG---GACTATCAGTTCGAGGTCCAGTGGCAAgtttgtggggcttctcctttctgggaaggcacaagggaggatatgccaag Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTC-TCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCC--CGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtggaacttgtacgtgtttcctcttcttttcttcctattgcccacagAGCGTCTTGGTCCCCCACGTGACGTCACGGCATCCTGCAACTCTTCCCATTGTACTGTTCTCATGGGCCCCACCCTCCACCTGGGCATCCCTGACGGCACG---GACTATCAGTTCGAGGTCCAGTGGCAAgtttgtggggcttctcctttctgggaaggcacaagggaggatatgccaag Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTC-TCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAGAGC- aatgtggaacttgtacgtgtttcctcttcttttcttcctattgcccacagAGCGTCTTGGTCCCCCACGTGACGTCACGGCATCCTGCAACTCTTCCCATTGTACTGTTCTCATGGGCCCCACCCTCCACCTGGGCATCCCTGACGGCACG-GACTATCAGTTCGAGGTCCAGTGGCAAGTTTgtggggcttctcctttctgggaaggcacaagggaggatatgccaag #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATC-CGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac ggacggggtgtggtgaattccagccaagtgtagtgcttttccactcccaggcACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGATTCCGAGCTTCTCGCTTCCTTTCCTGTGCTTGGC-AGAAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAacgtaggttgtaatctcccagccgtccgtccatccattgcattgctactatt Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATC-CGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac ggacggggtgtggtgaattccagccaagtgtagtgcttttccactcccaggcACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGATTCCGAGCTTCTCGCTTCCTTTCCTGTGCTTGGC-AGAAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAacgtaggttgtaatctcccagccgtccgtccatccattgcattgctactatt Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacggggtgtggtgaattccagccaagtgtagtgcttttccactcccagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGATTCCGAGCTTCTCGCTTCCTTTCCTGTGCTTGGCAGAAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtaggttgtaatctcccagccgtccgtccatccattgcattgctactatt Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGAT-CCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacggggtgtggtgaattccagccaagtgtagtgcttttccactcccagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGATTCCGAGCTTCTCGCTTCCTTTCCTGTGCTTGGC-AGAAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtaggttgtaatctcccagccgtccgtccatccattgcattgctactatt Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGA-TCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacggggtgtggtgaattccagccaagtgtagtgcttttccactcccagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGATTCCGAGCTTCTCGCTTCCTTTCCTGTGCTTGGC-AGAAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtaggttgtaatctcccagccgtccgtccatccattgcattgctactatt Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacggggtgtggtgaattccagccaagtgtagtgcttttccactcccagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGATTCCGAGCTTCTCGCTTCCTTTCCTGTGCTTGGCAGAAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtaggttgtaatctcccagccgtccgtccatccattgcattgctactatt Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacggggtgtggtgaattccagccaagtgtagtgcttttccactcccagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGATTCCGAGCTTCTCGCTTCCTTTCCTGTGCTTGGCAGAAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtaggttgtaatctcccagccgtccgtccatccattgcattgctactatt Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacggggtgtggtgaattccagccaagtgtagtgcttttccactcccagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTGAGATTCCGAGCTTCTCGCTTCCTTTCCTGTGCTTGGCAGAAGGGCCAGCGGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtaggttgtaatctcccagccgtccgtccatccattgcattgctactatt #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTC-ACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTACACACTGGATGTCAATGGCACAGTTGGGGGTGCAG-CGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTC-ACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTACACACTGGATGTCAATGGCACAGTTGGGGGTGCAG-CGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTACACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGT-CACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTACACACTGGATGTCAATGGCACAGTTGGGGGTGCAG-CGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGT-CACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTACACACTGGATGTCAATGGCACAGTTGGGGGTGCAG-CGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTACACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTACACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTACACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAG-CTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGG-CTGTAGCCCAGTGAATGCCAGGGTCACCggtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAG-CTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGG-GCTGTAGCCCAGTGAATGCCAGGGTCACCggtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGCTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGC-TAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGA-GGGCTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAG-CTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGG-CTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGCTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGCTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACCTCAAAGAACACTTGCTCCTGAGGAGGGCTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaacccctccatagggtcccttatttatcaactgtttttctgtagagCTCTCGGACTGTGGCAAGGAGCGACAAGGCCTGCTTGGGTGGATTGCCCT-CAATGCCTATGCAGCCATAAAGAATCTGggtaaaatggatctacctccagaaaacaacaactaccatgtgattgcaagt Alignment from CESAR agCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaacccctccatagggtcccttatttatcaactgtttttctgtagagCTCTCGGACTGTGGCAAGGAGCGACAAGGCCTGCTTGGGTGGATTGCCCT-CAATGCCTATGCAGCCATAAAGAATCTGggtaaaatggatctacctccagaaaacaacaactaccatgtgattgcaagt Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAG-GTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccatagggtcccttatttatcaactgtttttctgtagAGCTCTCGGACTGTGGCAAGgAGCGACAAGGCCTGCTTGGGTGGATTGCCCTC-AATGCCTATGCAGCCATAAAGAATCTGGgtaaaatggatctacctccagaaaacaacaactaccatgtgattgcaagt Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccatagggtcccttatttatcaactgtttttctgtagAGCTCTCGGACTGTGGCAAGGAGCGACAAGGCCTGCTTGGGTGGATTGCCCTC-AATGCCTATGCAGCCATAAAGAATCTGGgtaaaatggatctacctccagaaaacaacaactaccatgtgattgcaagt Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTG-GACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccatagggtcccttatttatcaactgtttttctgtagAGCTCTCGGACTGTGGCAAGGAGCGACAAGGCCTGCTTGGGTGGATTGCCCT-CAATGCCTATGCAGCCATAAAGAATCTGGgtaaaatggatctacctccagaaaacaacaactaccatgtgattgcaagt Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccatagggtcccttatttatcaactgtttttctgtagAGCTCTCGGACTGTGGCAAGGAGCGACAAGGCCTGCTTGGGTGGATTGCCCTCAATGCCTATGCAGCCATAAAGAATCTGGgtaaaatggatctacctccagaaaacaacaactaccatgtgattgcaagt Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccatagggtcccttatttatcaactgtttttctgtagAGCTCTCGGACTGTGGCAAGGAGCGACAAGGCCTGCTTGGGTGGATTGCCCTCAATGCCTATGCAGCCATAAAGAATCTGGgtaaaatggatctacctccagaaaacaacaactaccatgtgattgcaagt Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccatagggtcccttatttatcaactgtttttctgtagAGCTCTCGGACTGTGGCAAGGAGCGACAAGGCCTGCTTGGGTGGATTGCCCTCAATGCCTATGCAGCCATAAAGAATCTGGgtaaaatggatctacctccagaaaacaacaactaccatgtgattgcaagt #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCT-TTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCA-TGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtcacagtc Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCT-TTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCA-TGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtttcattt Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtcacagtc Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCT-TTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCA-TGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtcacagtc Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGC-TTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCA-TGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtcacagtc Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCT-TTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCC--ATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCAT---GATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtcacagtc Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCT-TTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCC--ATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCAT---GATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtcacagtc Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtcacagtc #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATC-GAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttggctagtttcatttttctcggtcactcagGGTGTT---ACACGCAACATTATACAGGCATGCATTCGAGGAGAATATTCATGCAAATATCCGCCGGCTTCAGG-AACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtaagtaagcaatctcaaaaggtaccaaaggccagccgtgtattgtccag Alignment from CESAR GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATC-GAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttggctagtttcatttttctcggtcactcagGGTGTT---ACACGCAACATTATACAGGCATGCATTCGAGGAGAATATTCATGCAAATATCCGCCGGCTTCAG-GAACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtaagtaagcaatctcaaaaggtaccaaaggccagccgtgtattgtccag Alignment from Spaln_aa2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATC-GAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttggctagtttcatttttctcggtcactcagGGTGTT---ACACGCAACATTATACAGGCATGCATTcGAGGAGAATATTCATGCAAATATCCGCCGGCTTCAGGA-ACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtaagtaagcaatctcaaaaggtaccaaaggccagccgtgtattgtccag Alignment from Spaln_nt2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCAT-CGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttggctagtttcatttttctcggtcactcagGGTGTTA---CACGCAACATTATACAGGCATGCATTCGAGGAGAATATTCATGCAAATATCCGCCGGCTTCAGG-AACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGA-AGGTGAGGAA--TTGGACACACAGgtaagtaagcaatctcaaaaggtaccaaaggccagccgtgtattgtccag Alignment from Pairagon -------------------------------------------------GGGCGTGAAGGCGCGGAACCTTATACACGCGCGCA-TCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG TCTGCACGGGCAAAGGCAGTTGGCTAGTTTCATTTTTCTCGGTCACTCAGGGTGTTA---CACGCAACATTATACAGGCATGCATTCGAGGAGAATATTCATGCAAATATCCGCCGGCTTCAGGA-ACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGA-----------------------AGgtgaggaattggacacacaggtaagtaagcaatctcaaaaggtaccaaaggccagccgtgtattgtccag Alignment from Exonerate_protein2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttggctagtttcatttttctcggtcactcagGGTGTT---ACACGCAACATTATACAGGCATGCATTCGAGGAGAATATTCATGCAAATATCCGCCGGCTTCAGGAACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtaagtaagcaatctcaaaaggtaccaaaggccagccgtgtattgtccag Alignment from Exonerate_coding2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttggctagtttcatttttctcggtcactcagGGTGTT---ACACGCAACATTATACAGGCATGCATTCGAGGAGAATATTCATGCAAATATCCGCCGGCTTCAGGAACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtaagtaagcaatctcaaaaggtaccaaaggccagccgtgtattgtccag Alignment from GeneWise GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttggctagtttcatttttctcggtcactcagGGTGTT---ACACGCAACATTATACAGGCATGCATTCGAGGAGAATATTCATGCAAATATCCGCCGGCTTCAGGAACAGAACCAGATGGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtaagtaagcaatctcaaaaggtaccaaaggccagccgtgtattgtccag #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCAT-GGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATCGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTT-TGATAAAGCTACTAATGGAATGggtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCAT-GGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATCGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGG-TTTTGATAAAGCTACTAATGGAATGggtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATCGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCAT-GGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATCGGGGAAGAATTTGCTGGAAGAGGAAGACTACC-GGTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCAT-GGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATCGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGG-TTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATCGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATCGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATCGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGG-AAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agagaatgtgtgagcccaattccagctatccctgctccttcccacttcaggaATTATATTCAGTAAGGGAAATGTGTGGCAAAAACATAAGGCACTTCTCACTTACAACTC-GCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGG-AAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agagaatgtgtgagcccaattccagctatccctgctccttcccacttcaggaATTATATTCAGTAAGGGAAATGTGTGGCAAAAACATAAGGCACTTCTCACTTACAACT-CGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGCAAAAACATAAGGCACTTCTCACTTACAACTCGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGA-AAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGCAAAAACATAAGGCACTTCTCACTTACAACTC-GCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGG-AAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGCAAAAACATAAGGCACTTCTCACTTACAACTC-GCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGCAAAAACATAAGGCACTTCTCACTTACAACTCGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGCAAAAACATAAGGCACTTCTCACTTACAACTCGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGCAAAAACATAAGGCACTTCTCACTTACAACTCGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggttaactctgtaactaataattttttgcttataggtATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGG-AGAACTTAGAAAGACTAATggtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggttaactctgtaactaataattttttgcttataggtATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGG-AGAACTTAGAAAGACTAATggtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTcGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGAA-CTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGA-GAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGA-GAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGAACTTAGAAAGACTAATGGtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATT-GAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGAACTTAGAAAGACTAATGGtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTCGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATG-GGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATAT-GGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATT-TGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATG-GGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATG-GGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from CESAR CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAcGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGC-AGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAG-CCCAGGGGCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Pairagon CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGG-CAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTT-GTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcttggtaaaccttttctcagctgctagactctggttctttttctcttaggtGTAACATCAAAGCAGATAGCACTGCGTG---TATCGGATATGCACCACCCTCATTGGAG-TGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAggtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcttggtaaaccttttctcagctgctagactctggttctttttctcttaggtGTAACATCAAAGCAGATAGCACTG--CGTGTATCGGATATGCACCACCCTCATTGGAG-TGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAggtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGCGTGTATCGGATATGCACCACCCTCAT---TGGAGTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCAC-TGCG-TGTATCGGATATGCACCACCCTCATTGGAGT-GAAGAGCACCTGAACGC---AGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACT---TGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGCGTGT-----ATCGGATATGCACCACCCTCATTGGAGT-GAAGAGCACCTGAACGC---AGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGCGTGTATCGGATATGCACCACCCTCATTGGAGT---GAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Exonerate_coding2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGCGTGTA--TCGGATATGCACCACCCTCATTGGAGT-GAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGCGTGTATCGGATATGCACCACCCTCATTGGAGT---GAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGT-GGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg attcctagcgccagtcacaaggaggctggcctgtccttctcactccccaggtTCTTCAGTGGTGCTGATAGTGAATAACCTTGGTCGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCG-TGCTGCCATACGTTTGCTTggtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGT-GGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg attcctagcgccagtcacaaggaggctggcctgtccttctcactccccaggtTCTTCAGTGGTGCTGATAGTGAATAACCTTGGTCGGTCTCTCTTTCCGGGAACTGGGTATTATAGCC-GTGCTGCCATACGTTTGCTTggtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCTTGGTCGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGTGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGT-GGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCTTGGTCGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCG-TGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGT-GGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCTTGGTCGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCG-TGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCTTGGTCGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGTGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCTTGGTCGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGTGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCTTGGTCGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGTGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatccccatccctgcatctgttacataggtACCCTAGGTGTGACCTTGCTCATCCTGCAGTGTCCCTGGCACCACACACACTTTCG-GCTTGCAGCTGATGAAATAGAGTTAGGCTTGggtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from CESAR gtACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatccccatccctgcatctgttacataggtACCCTAGGTGTGACCTTGCTCATCCTGCAGTGTCCCTGGCACCACACACACTTTC-GGCTTGCAGCTGATGAAATAGAGTTAGGCTTGggtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGcTCATCCTGCAGTGTCCCTGGCACCACACACACTTTCGGCTT-GCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGCTCATCCTGCAGTGTCCCTGGCACCACACACACT-TTCGGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Pairagon GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGCTCATCCTGCAGTGTCCCTGGCACCACACACACTTTCG-GCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGCTCATCCTGCAGTGTCCCTGGCACCACACACACTTTCGGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGCTCATCCTGCAGTGTCCCTGGCACCACACACACTTTCGGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGCTCATCCTGCAGTGTCCCTGGCACCACACACACTTTCGGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAA-CAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACCAAGGCTCCTATGTAGTGGCAATGGAAACAT-TACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from CESAR CTCAATGTCGACAGCAACGAA-CAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACCAAGGCTCCTATGTAGTGGCAATGGAAACA-TTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACCAAGGCTCCTATGTAGTGGCAATGGAAACATTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAAC-AAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACCAAGGCTCCTATGTAGTGGCAATGGAAA-CATTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Pairagon CTCAATGTCGACAGCAACGAA-CAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACCAAGGCTCCTATGTAGTGGCAATGGAAACA-TTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACCAAGGCTCCTATGTAGTGGCAATGGAAACATTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACCAAGGCTCCTATGTAGTGGCAATGGAAACATTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACCAAGGCTCCTATGTAGTGGCAATGGAAACATTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTC-TCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagcCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATGGCCTCCTCCCCGCTTTGTGCCATTGGACTTTGGACAG-TATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtacttctattagtacttccaggtcaaagccctagtaaggtaaacaaagt Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTC-TCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagcCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATGGCCTCCTCCCCGCTTTGTGCCATTGGACTTTGGACA-GTATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtacttctattagtacttccaggtcaaagccctagtaaggtgtctgtctt Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATGGCCTCCTCCCCGCTTTGTGCCATTGGACTTTGGACAGTATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggtaaacaaagt Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCT-CTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATGGCCTCCTCCCCGCTTTGTGCCATTGGACTTTGGACAG-TATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggtaaacaaagt Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCT-CTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATGGCCTCCTCCCCGCTTTGTGCCATTGGACTTTGGACAG-TATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggtaaacaaagt Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATGGCCTCCTCCCCGCTTTGTGCCATTGGACTTTGGACAGTATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggtaaacaaagt Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATGGCCTCCTCCCCGCTTTGTGCCATTGGACTTTGGACAGTATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggtaaacaaagt Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACA------GACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATGGCCTCCTCCCC------GCTTTGTGCCATTGGACTTTGGACAGTATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggtaaacaaagt #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTT-CTACTTCGGGCTCAATATCGAGACAggtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTC-TTTCTACTTCGGGCTCAATATCGAGACAggtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTcAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCT-TTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTT-CTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGT-AGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTC-TTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAG---CCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGT--CAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCT-TTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTCAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTAT-AGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag atagcagctttgccctgttttccttcctctgttgattttcttctcctcaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATCAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACC-CAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTAT-AGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag atagcagctttgccctgttttccttcctctgttgattttcttctcctcaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATCAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAAC-CCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTAT-AGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATcAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCAAG-GAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTAT-AGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATCAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACC-CAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTAT-AGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATCAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACC-CAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATCAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATCAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATCAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact #### Ddb1_ID2936_21 --> 2 - 0 Original Alignment gaAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcaggaAAACTACAGACTGTCGCTGATAAGCGAAGTAAAAGGGGCTGTGTACTCCATGGTGGAGT-TAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from CESAR gaAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcaggaAAACTACAGACTGTCGCTGATAAGCGAAGTAAAAGGGGCTGTGTACTCCATGGTGGAG-TTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Spaln_aa2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGCGAAGTAAAAGGGGCTGTGTACTCCATGGTGGAGTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Spaln_nt2Genome GAAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGCGAAGTAAAAGGGGCTGTGTACTCCATGGTGGAGTTA-ATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Pairagon GAAAACTACAGACTGTGGCTGAAAAG-GAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGCGAAGTAAAAGGGGCTGTGTACTCCATGGTGGAG-TTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Exonerate_protein2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGCGAAGTAAAAGGGGCTGTGTACTCCATGGTGGAGTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Exonerate_coding2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGCGAAGTAAAAGGGGCTGTGTACTCCATGGTGGAGTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from GeneWise GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGCGAAGTAAAAGGGGCTGTGTACTCCATGGTGGAGTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGAT-GAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg acagcctcttagggagaagtgttctggagttttccaatctattcttctagtGCTGCAACCACTGTCCGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCT-TCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCTCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAggtaagtgttgttcttggtgagcacacctggctcgagctcttatgccaggc Alignment from CESAR tGCTGCCACCACT-GATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg acagcctcttagggagaagtgttctggagttttccaatctattcttctagtGCTGCAACCACTGTCCGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCT-TCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCTCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAggtaagtgttgttcttggtgagcacacctggctcgagctcttatgccaggc Alignment from Spaln_aa2Genome TGCTGCCACCACT-GATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG acagcctcttagggagaagtgttctggagttttccaatctattcttctagTGCTGCAACCACTgTCCGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTT-CACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCTCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAGgtaagtgttgttcttggtgagcacacctggctcgagctcttatgccaggc Alignment from Spaln_nt2Genome TGCTGCCACCACTGAT-GAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG acagcctcttagggagaagtgttctggagttttccaatctattcttctagTGCTGCAACCACTGTCCGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTT-CACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCTCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAGgtaagtgttgttcttggtgagcacacctggctcgagctcttatgccaggc Alignment from Pairagon TGCTGCCACCACTG-ATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG acagcctcttagggagaagtgttctggagttttccaatctattcttctagTGCTGCAACCACTGTCCGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTT-CACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCTCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAGgtaagtgttgttcttggtgagcacacctggctcgagctcttatgccaggc Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG acagcctcttagggagaagtgttctggagttttccaatctattcttctagTGCTGCAACCACTGTCCGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCTCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAGgtaagtgttgttcttggtgagcacacctggctcgagctcttatgccaggc Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG acagcctcttagggagaagtgttctggagttttccaatctattcttctagTGCTGCAACCACTGTCCGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCTCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAGgtaagtgttgttcttggtgagcacacctggctcgagctcttatgccaggc Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG acagcctcttagggagaagtgttctggagttttccaatctattcttctagTGCTGCAACCACTGTCCGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCTCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCAGTGCTTTTTGGCACAGTCAATATCATGATAGgtaagtgttgttcttggtgagcacacctggctcgagctcttatgccaggc #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCC-GCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacaggaATATGCATGCCCTCTGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCAGGGGATGGATTTCCCAGAAGAACTACAT-GGCTTCAAAGATTTATCATACTAAAggtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCC-GCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacaggaATATGCATGCCCTCTGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCAGGGGATGGATTTCCCAGAAGAACTA-CATGGCTTCAAAGATTTATCATACTAAAggtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCAGGGGATGGATTTCCCAGAAGAACTACATGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGC-CGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCAGGGGATGGATTTCCCAGAAGAACTACA-TGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGC-CGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCAGGGGATGGATTTCCCAGAAGAACTACA-TGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCAGGGGATGGATTTCCCAGAAGAACTACATGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCAGGGGATGGATTTCCCAGAAGAACTACATGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTCGCAGGGGATGGATTTCCCAGAAGAACTACATGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac #### Dock8_ID5396_17 --> 1 - 0 Original Alignment gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTC-CTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGA-GCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from CESAR gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTC-CTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCCTCTTCACCTTCTACCACATCAGCTGTCAGC-AGAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Spaln_aa2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Spaln_nt2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCT-CCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCCTCTTCACCTTCTACCACATCAGCTGTCAGCAG-AGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Pairagon GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCT-CCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCCTCTTCACCTTCTACCACATCAGCTGTCAGCAG-AGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Exonerate_protein2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTC-CTCTTCACCTTCTACCACATCAGCTGTCAGCAG--AAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAG---CAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Exonerate_coding2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTC-CTCTTCACCTTCTACCACATCAGCTGTCAGCAG--AAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAG---CAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from GeneWise GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAG-TCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGCTCAAGAGACGTCAAGGCCAAGCTGGAAGAGG-CCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAG-TCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGCTCAAGAGACGTCAAGGCCAAGCTGGAAGAGG-CCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Spaln_aa2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGCTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAG-TCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGCTCAAGAGACGTCAAGGCCAAGCTGGAAGAGG-CCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAG-TCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGCTCAAGAGACGTCAAGGCCAAGCTGGAAGAGG-CCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGCTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGCTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGCTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg #### Dpf2_ID1304_9 --> 2 - 0 Original Alignment ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATG-ATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttccaactctgcttcttttgatctcttagggCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGCATGGCGGCTGTGAAGACCTACCGCTGGCAGT-TATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtaagtgtcattgagccagctaggcccgatgagcctgccgggcttcaata Alignment from CESAR ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATG-ATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttccaactctgcttcttttgatctcttagggCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGCATGGCGGCTGTGAAGACCTACCGCTGGCAG-TTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtaagtgtcattgagccagctaggcccgatgagcctgccgggcttcaata Alignment from Spaln_aa2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttccaactctgcttcttttgatctcttagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGCATGGCGGCTGTGAAGACCTACCGCTGGCAGTTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtaagtgtcattgagccagctaggcccgatgagcctgccgggcttcaata Alignment from Spaln_nt2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATG-ATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttccaactctgcttcttttgatctcttagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGCATGGCGGCTGTGAAGACCTACCGCTGGCAGT-TATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtaagtgtcattgagccagctaggcccgatgagcctgccgggcttcaata Alignment from Pairagon GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATG-ATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttccaactctgcttcttttgatctcttagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGCATGGCGGCTGTGAAGACCTACCGCTGGCAGT-TATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtaagtgtcattgagccagctaggcccgatgagcctgccgggcttcaata Alignment from Exonerate_protein2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttccaactctgcttcttttgatctcttagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGCATGGCGGCTGTGAAGACCTACCGCTGGCAGTTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtaagtgtcattgagccagctaggcccgatgagcctgccgggcttcaata Alignment from Exonerate_coding2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttccaactctgcttcttttgatctcttagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGCATGGCGGCTGTGAAGACCTACCGCTGGCAGTTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtaagtgtcattgagccagctaggcccgatgagcctgccgggcttcaata Alignment from GeneWise GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttccaactctgcttcttttgatctcttagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGCATGGCGGCTGTGAAGACCTACCGCTGGCAGTTATCGAATGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtaagtgtcattgagccagctaggcccgatgagcctgccgggcttcaata #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAA-ATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAG-GTCCTGTTCTGACTGTGGCCGCTCAggtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAA-ATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCTA-GGTCCTGTTCTGACTGTGGCCGCTCAggtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTC-AAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAG-GTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAA-ATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAG-GTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAACATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTG-CTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCCTGGCTGTGGCCTATGCCGCAAAGCGAGAGA-GCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTG-CTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCCTGGCTGTGGCCTATGCCGCAAAGCGAG-AGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTG-CTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCCTGGCTGTGGCCTATGCCGCAAAGCGAGAG-AGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTG-CTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCCTGGCTGTGGCCTATGCCGCAAAGCGAGAG-AGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCCTC-TGCCCACTATCAGaggtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACC-CTCTGCCCACTATCAGaggtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAcGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCT-GCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCCT-CTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCCT-CTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCT--CCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCT---GCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Exonerate_coding2genome GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCT--CCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCT---GCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAA-GAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAGC-- cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAACGAGGAGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCTGCCCACTATCAGAGGTAAgtttcacaggggtagcgtaatatttttgttaacctattgatgctag #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtaagtagccaggggtctgcgccccctctcatccaaccccaggGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAG-TAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgagtagccaggggtctgcgccccctctcatccaaccccaggGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCA-AAGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAA-GTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAG-CAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAA-GTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Exonerate_coding2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from GeneWise CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTG-TTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagccCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGA-CATGACCACATCTCACctgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTG-TTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagccCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGA-CATGACCACATCTCACctgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTG-TTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGcCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGAC-ATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGT-TGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGA-CATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTG-TTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGA-CATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTG-TTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAA--ACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGAC---ATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTT---GAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTG--CCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGAC-ATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAG-GCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttaatgttgtgatgtactaaatggtaacccacctcttccttacagtaAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGCGCGGCAGCTCAGGTGGCACAGTGGGTTA-CTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaacatttgtcggtgatgggccaccaatagagtgagagttggaagccca Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAG-GCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttaatgttgtgatgtactaaatggtaacccacctcttccttacagtaAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGCGCGGCAGCTCAGGTGGCACAGTGGGTTA-CTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaacatttgtcggtgatgggccaccaatagagtgagagttggaagccca Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttaatgttgtgatgtactaaatggtaacccacctcttccttacagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGCGCGGCAGCTCAGGTGGCACAGTGGGTTACTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaacatttgtcggtgatgggccaccaatagagtgagagttggaagccca Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAG-GCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttaatgttgtgatgtactaaatggtaacccacctcttccttacagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGCGCGGCAGCTCAGGTGGCACAGTGGGTTA-CTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaacatttgtcggtgatgggccaccaatagagtgagagttggaagccca Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAG-GCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttaatgttgtgatgtactaaatggtaacccacctcttccttacagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGCGCGGCAGCTCAGGTGGCACAGTGGGTTA-CTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaacatttgtcggtgatgggccaccaatagagtgagagttggaagccca Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttaatgttgtgatgtactaaatggtaacccacctcttccttacagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGCGCGGCAGCTCAGGTGGCACAGTGGGTTACTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaacatttgtcggtgatgggccaccaatagagtgagagttggaagccca Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttaatgttgtgatgtactaaatggtaacccacctcttccttacagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGCGCGGCAGCTCAGGTGGCACAGTGGGTTACTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaacatttgtcggtgatgggccaccaatagagtgagagttggaagccca Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttaatgttgtgatgtactaaatggtaacccacctcttccttacagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGCGCGGCAGCTCAGGTGGCACAGTGGGTTACTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaacatttgtcggtgatgggccaccaatagagtgagagttggaagccca #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAG-CATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagacATAGATGAGTGTCGTTACCGCTATTGCCAGCCATCGATGTGTGAATCTGCCAGGCTCATTTCGAT-CCAGTGCGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGggtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAG-CATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagacATAGATGAGTGTCGTTACCGCTATTGCCAGCCATCGATGTGTGAATCTGCCAGGCTCATTTCGA-TCCAGTGCGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGggtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCCATCGATGTGTGAATCTGCCAGGCTCATTTCGATCCAGTGCGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAG-CATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCCATCGATGTGTGAATCTGCCAGGCTCATTTCGAT-CCAGTGCGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAG-CATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCCATCGATGTGTGAATCTGCCAGGCTCATTTCGAT-CCAGTGCGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAG-CATCGATGTGTGAACCTGCCGGGCTCTTTTCGA--TGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCCATCGATGTGTGAATCTGCCAGGCTCATTTCGATC---CAGTGCGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAG-CATCGATGTGTGAACCTGCCGGGCTCTTTTCGA--TGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCCATCGATGTGTGAATCTGCCAGGCTCATTTCGATC---CAGTGCGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCCATCGATGTGTGAATCTGCCAGGCTCATTTCGATCCAGTGCGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACC-AACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCT-CTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACC-AACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCCAAGTTCACCACATCCTGGCGCAATGGCTTGG-CCTCTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCAC-CAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCCAAGTTCACCACATCCTGGCGCAATGGCTTGGCC-TCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCA-CCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCCAAGTTCACCACATCCTGGCGCAATGGCTTGGCC-TCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCA-GGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCACGGGCCTATACCTGCCCAGATCTCACTTCAACTGC-GCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCGGTC---CTGCTACAAGAAGGCCGTGCCacgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCA-GGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCACGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGC-AGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCG---GTCCTGCTACAAGAAGGCCGTGCCacgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCACGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCG---GTCCTGCTACAAGAAGGCCGTGCCACgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCA-GGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCACGGGCCTATACCTGCCCAGATCTCACTTCAACTGC-GCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGC---GGTCCTGCTACAAGAAGGCCGTGCCACgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCA-GGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCACGGGCCTATACCTGCCCAGATCTCACTTCAACTGC-GCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCT---TGCGGTCCTGCTACAAGAAGGCCGTGCCACgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Exonerate_protein2genome attgcaactatctatcttcacacttcccgataggcttctgctggggccaggagtcaaagggacagcggaaagtactggccacagttgatgtcaacttagaccatcacgcacgggcctatacctgcccagatctcacttcaactgcgcagaagcccaagtctgtgaaagttgtgcatgctgagcttagcctcacccttgcggtcctgctacaagaaggccgtgccacgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Exonerate_coding2genome attgcaactatctatcttcacacttcccgataggcttctgctggggccaggagtcaaagggacagcggaaagtactggccacagttgatgtcaacttagaccatcacgcacgggcctatacctgcccagatctcacttcaactgcgcagaagcccaagtctgtgaaagttgtgcatgctgagcttagcctcacccttgcggtcctgctacaagaaggccgtgccacgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCACGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCG---GTCCTGCTACAAGAAGGCCGTGCCACgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAG-CGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCCGCTTCCTGGTCAGCATGCCCTCCAAATACC-CAAGAACATCTGGATCAAGAGAggtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAG-CGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCCGCTTCCTGGTCAGCATGCCCTCCAAATAC-CCAAGAACATCTGGATCAAGAGAggtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCCGCTTCCTGGTCAGCATGCCCTCCAAATACCCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAG-CGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCCGCTTCCTGGTCAGCATGCCCTCCAAATACC-CAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAG-CGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCCGCTTCCTGGTCAGCATGCCCTCCAAATACC-CAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCCGCTTCCTGGTCAGCATGCCCTCCAAATACCCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCCGCTTCCTGGTCAGCATGCCCTCCAAATACCCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCCGCTTCCTGGTCAGCATGCCCTCCAAATACCCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAG-GCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagggGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGCGCAGAGATCTCATTTGTACTCTGCAAGAACC-TGTCCACGCCCTACAGAAGGAAGGCCAAtggtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAG-GCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagggGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGCGCAGAGATCTCATTTGTACTCTGCAAGAAC-CTGTCCACGCCCTACAGAAGGAAGGCCAAtggtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGCGCAGAGATCTCATTTGTACTCTGCAAGAACCTGTCCACGCCCTACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAG-GCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGCGCAGAGATCTCATTTGTACTCTGCAAGAACC-TGTCCACGCCCTACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAG-GCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGCGCAGAGATCTCATTTGTACTCTGCAAGAACC-TGTCCACGCCCTACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGCGCAGAGATCTCATTTGTACTCTGCAAGAACCTGTCCACGCCCTACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGCGCAGAGATCTCATTTGTACTCTGCAAGAACCTGTCCACGCCCTACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGCGCAGAGATCTCATTTGTACTCTGCAAGAACCTGTCCACGCCCTACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAG-GTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGCGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTC-GGAACGCCTCAAAACTCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAG-GTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGCGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTT-CGGAACGCCTCAAAACTCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAG-GTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGcGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCG-GAACGCCTCAAAACTCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAG-GTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGCGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCGGA-ACGCCTCAAAACTCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAG-GTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGCGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTC-GGAACGCCTCAAAACTCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGCGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCGGAACGCCTCAAAACTCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGCGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCGGAACGCCTCAAAACTCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGCGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCGGAACGCCTCAAAACTCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGC-ATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTCATGCCTTCAGAACAGATAAGGAACCAGCTCACCG-CATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGC-ATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTCATGCCTTCAGAACAGATAAGGAACCAGCTCACCG-CATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTCATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAG-CATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTCATGCCTTCAGAACAGATAAGGAACCAGCTCACCG-CATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAG-CATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTCATGCCTTCAGAACAGATAAGGAACCAGCTCACCG-CATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTCATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTCATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTCATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAA-GAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAACGAAGAGTTAGAGATTGTACCTTCCTCTGGACCCCCTG-CCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtaatctttatgttttcccccataggCCGCGAAGAAATTCTTCCTCCTCA Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAA-GAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAACGAAGAGTTAGAGATTGTACCTTCCTCTGGACCCCCTG-CCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtatttacttccttgcctgttttaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCA GCGTTCTGACACGCCCCGAAGAAAT tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAACGAAGAGTTAGAGATTGTACCTTCCTCTGGACCCCCTGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAgtgttcagacacgtaatctttatgttttcccccatagG------------CCGCGAAGAAAT Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAA-GAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGC GTTCTGACACGCCCCGAAGAAATTC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAACGAAGAGTTAGAGATTGTACCTTCCTCTGGACCCCCT-GCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTgttcagacacgtaatctttatgttttcccccatag----------GCCGCGAAGAAATTC Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAA-GAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC-------------------------GCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAACGAAGAGTTAGAGATTGTACCTTCCTCTGGACCCCCT-GCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTAATCTTTATGTTTTCCCCCATAGGCCGCGAAGAAATTCTTCCTCCTCA Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAACGAAGAGTTAGAGATTGTACCTTCCTCTGGACCCCCTGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtaatctttatgttttcccccataggccgcgAAGAAATTCTTCCTCCTCA Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAACGAAGAGTTAGAGATTGTACCTTCCTCTGGACCCCCTGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtaatctttatgttttcccccataggccgcgAAGAAATTCTTCCTCCTCA Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAACGAAGAGTTAGAGATTGTACCTTCCTCTGGACCCCCTGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtaatctttatgttttcccccatagGCCGCGAAGAAATTCTTCCTCCTCA #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGT-CCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagaaGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCCATCACAATGTACATTCCATCTGGCATCCGGAGTC-TGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGgtgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCC-ATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagaaGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCCATCACAATGTACATTCCATCTGGCATCCGGAGTC-TGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGgtgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGT-CCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTcCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCT-GAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCC-CATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCCATCACAATGTACATTCCATCTGGCATCCGGAGTC-TGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGT-CCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCCATCACAATGTACATTCCATCTGGCATCCGGAGTC-TGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGT-CCCATCACCATGTACATTCCGTCTGGCATCCGA--AGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCT---GAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCAT---GTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCC--CATCACAATGTACATTCCATCTGGCATCCGGAGTCT-GAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGG-ACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCCACAGGGGCTCCTGGGAATGGACTCCTTGCCC-GAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGG-ACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCCACAGGGGCTCCTGGGAATGGACTCCTTGCCC-GAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGG-ACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCcACAGGGGCTCCTGGGAATGGACTCCTTGCCCG-AAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGG-ACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCCACAGGGGCTCCTGGGAATGGACTCCTTGCCC-GAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Pairagon AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGG-GACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCCACAGGGGCTCCTGGGAATGGACTCCTTGCCC-GAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGG-ACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGAAGCAGGGTGTTCTTGGGGtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Exonerate_coding2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGG-ACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGAAGCAGGGTGTTCTTGGGGtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACA-GTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgtccatgtctaatgcaaaggcttgcctgtgttatgtttactgtgtagagACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCACCAGGATGGAACACGTACTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGT-GGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtatatcatgtcctggactctgagtctgagaagggatggggagacatgtg Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACA-GTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgtccatgtctaatgcaaaggcttgcctgtgttatgtttactgtgtagagACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCACCAGGATGGAACACGTACTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGT-GGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtatatcatgtcctggactctgagtctgagaagggatggggagacatgtg Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgtccatgtctaatgcaaaggcttgcctgtgttatgtttactgtgtagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCACCAGGATGGAACACGTACTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtatatcatgtcctggactctgagtctgagaagggatggggagacatgtg Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACA-GTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgtccatgtctaatgcaaaggcttgcctgtgttatgtttactgtgtagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCACCAGGATGGAACACGTACTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGT-GGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtatatcatgtcctggactctgagtctgagaagggatggggagacatgtg Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACA-GTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgtccatgtctaatgcaaaggcttgcctgtgttatgtttactgtgtagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCACCAGGATGGAACACGTACTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGT-GGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtatatcatgtcctggactctgagtctgagaagggatggggagacatgtg Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACA-GTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGG--GGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgtccatgtctaatgcaaaggcttgcctgtgttatgtttactgtgtagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCACCAGGATGGAACACGTACTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGG---CCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtatatcatgtcctggactctgagtctgagaagggatggggagacatgtg Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGT---GCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgtccatgtctaatgcaaaggcttgcctgtgttatgtttactgtgtagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCACCAGGATGGAACA--CGTACTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTG-GGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtatatcatgtcctggactctgagtctgagaagggatggggagacatgtg Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACA-GTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgtccatgtctaatgcaaaggcttgcctgtgttatgtttactgtgtagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCACCAGGATGGAACACGTACTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGG-CCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtatatcatgtcctggactctgagtctgagaagggatggggagacatgtg #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACC-CGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaggtGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCCTGGCATGGCTACATCTTTTCATCATTGGCTGGCT-TCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGG-CATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaggtGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCCTGGCATGGCTACATCTTTTCATCATTGGCTGGC-TTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACA-CCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCCTGGCATGGCTACATCTTTTCATCATTGGCTGGCT-TCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCC-GGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCCTGGCATGGCTACATCTTTTCATCATTGGCTGGCT-TCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Exonerate_coding2genome GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCG---GCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaGGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACC--CTGGCATGGCTACATCTTTTCATCATTGGCTGGCTT-CTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from GeneWise GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaGGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGA-ACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGACACTTCCTTGGTGCCC---ATACTTTGTGCAG-ATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGA-ACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGACACTTCCTTGGTGCCC---ATACTTTGTGCA-GATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGACACTTCCTTGGTGCCCATACTTTGTGCAGA---TTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGA-ACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGACACTTCCTTGGTGCC---CATACTTTGTGCAG-ATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGA-ACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGACACTTCCTTGGTGCC---CATACTTTGTGCAG-ATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGACACTTCCTTGGTGCCCATACTTTGTGCAGA---TTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGACACTTCCTTGGTGCCCATACTTTGTGCAGA---TTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGACACTTCCTTGGTGCCCATACTTTGTGCAGA---TTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTC-ACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgttgggagggcaaagacaatgctccctctcctgctctgttctagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTACGCTTATATCTCACTCCCAGGGCTGAAAGGCTTCCTGGGGC-TTTCTTCATTGTTaggtgagtacattctgtgaagtatacaggtaagcctagacatcatagttagc Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTC-TTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgttgggagggcaaagacaatgctccctctcctgctctgttctagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTACGCTTATATCTCACTCCCAGGGCTGAAAGGCTTCCTGGGGC-TTTCTTCATTGTTaggtgagtacattctgtgaagtatacaggtaagcctagacatcatagttagc Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATC-TTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTT---TTCTTCATTGTCAG gaatctgttgggagggcaaagacaatgctccctctcctgctctgttctagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCtTTTTACGCTTATATCTCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTCTTCATTGTTAGGTGAgtacattctgtgaagtatacaggtaagcctagacatcatagttagc Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTT-CACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgttgggagggcaaagacaatgctccctctcctgctctgttctagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTACGCTTATATCTCACTCCCAGGGCTGAAAGGCTTCCTGGGGC-TTTCTTCATTGTTAGgtgagtacattctgtgaagtatacaggtaagcctagacatcatagttagc Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTT-CACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgttgggagggcaaagacaatgctccctctcctgctctgttctagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTACGCTTATATCTCACTCCCAGGGCTGAAAGGCTTCCTGGGGC-TTTCTTCATTGTTAGgtgagtacattctgtgaagtatacaggtaagcctagacatcatagttagc Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgttgggagggcaaagacaatgctccctctcctgctctgttctagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTACGCTTATATCTCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTCTTCATTGTTAGgtgagtacattctgtgaagtatacaggtaagcctagacatcatagttagc Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgttgggagggcaaagacaatgctccctctcctgctctgttctagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTACGCTTATATCTCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTCTTCATTGTTAGgtgagtacattctgtgaagtatacaggtaagcctagacatcatagttagc Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgttgggagggcaaagacaatgctccctctcctgctctgttctagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTACGCTTATATCTCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTCTTCATTGTTAGgtgagtacattctgtgaagtatacaggtaagcctagacatcatagttagc #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta caataagggattgacagggaagcaaaattactgacccatccccattgcagtGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACCAGTAGTACAATCCCTATGTG-CAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta caataagggattgacagggaagcaaaattactgacccatccccattgcagtGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACCAGTAGTACAATCCCTATGTG-CAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACCAGTAGTACAATCCCTATGTGCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACCAGTAGTACAATCCCTATGTG-CAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACCAGTAGTACAATCCCTATGTG-CAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACCAGTAGTACAATCCCTATGTGCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACCAGTAGTACAATCCCTATGTGCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACCAGTAGTACAATCCCTATGTGCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCT-GCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTCGCCAGTTTCTACACCCACTTTTTCCTGTCCTACTCACCCTTCT-CGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCaggtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from CESAR GACTTGCTGTGGGCT-GCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTCGCCAGTTTCTACACCCACTTTTTCCTGTCCTACTCACCCTTC-TCGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCaggtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Spaln_aa2Genome GACTTGCTGTGGGCT-GCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTcGCCAGTTTCTACACCCACTTTTTCCTGTCCTACTCACCCTTCTC-GGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Spaln_nt2Genome GACTTGCTGTGGGCT-GCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTCGCCAGTTTCTACACCCACTTTTTCCTGTCCTACTCACCCTTCT-CGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Pairagon GACTTGCTGTGGGCT-GCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTCGCCAGTTTCTACACCCACTTTTTCCTGTCCTACTCACCCTTCT-CGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTCGCCAGTTTCTACACCCACTTTTTCCTGTCCTACTCACCCTTCTCGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTCGCCAGTTTCTACACCCACTTTTTCCTGTCCTACTCACCCTTCTCGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTCGCCAGTTTCTACACCCACTTTTTCCTGTCCTACTCACCCTTCTCGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTG-AGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGCAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCA-CTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTG-AGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGCAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCA-CTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTG-AGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGcAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCAC-TGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTG-AGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGCAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCA-CTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTG-AGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGCAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCA-CTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTG-AGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGC--ACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGCAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCAC---TGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTG-AGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGC--ACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGCAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCAC---TGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGCAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaataggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGCGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTG-TTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaataggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGCGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTT-GTTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGCGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGTTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGCGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTG-TTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGCGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTG-TTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGCGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGTTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGCGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGTTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTA------ATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGCGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTG------GTTTGTTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTCGCTCTTGCCAAAGCTATCCACAAAAGGTTCT-TGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTCGCTCTTGCCAAAGCTATCCACAAAAGGT-TCTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTCGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTCGCTCTTGCCAAAGCTATCCACAAAAGGTTC-TTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTT-GCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTCGCTCTTGCCAAAGCTATCCACAAAAGGTTC-TTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTCGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTCGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTCGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTC-CGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGG-TGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTC-CGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGG-TGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCC-GGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGT-GTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGT-CCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGT-GTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGT---CCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATT--GTCCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGT-GTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAAC-CTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGA-CAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTgtgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAAC-CTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGG-AGACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTgtgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAAC-CTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACcCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAC-AAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAA-CCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGA-CAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAA-CCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAG-ACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAAC-CTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAG--AACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAC---AAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAAC-CTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAG--AACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAC---AAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAAC-CAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagaGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCCAAGAGTGGATATGTTCACCCCGCACCAGCC-AGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACaggtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAAC-CAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagaGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCCAAGAGTGGATATGTTCACCCCGCACCA-GCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACaggtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCCAAGAGTGGATATGTTCACCCCGCACCAGCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAAC-CAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCCAAGAGTGGATATGTTCACCCCGCACCAG-CCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAA-CCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCCAAGAGTGGATATGTTCACCCCGCACCAG-CCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCCAAGAGTGGATATGTTCACCCCGCACCAGCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCCAAGAGTGGATATGTTCACCCCGCACCAGCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCCAAGAGTGGATATGTTCACCCCGCACCAGCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca #### Fam160b1_ID12365_16 --> 0 - 2 Original Alignment GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACC-CCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCat agtaaagtatggtactgtggaactgtatccactctgaaactttgttacagGTTGTTGGTGATCTCATGGTTCAAATCCAGCGTATTCAAGACTTTACCCCTGAAGCTTCTTCTGGTCAGAAAGCGACTGC-TGGCTTGGAGCCTGAAGGCCCCatgtaattgagagcttcataaattttttgctagaaatcctcctgtttggggc Alignment from CESAR GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCC-AAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCat agtaaagtatggtactgtggaactgtatccactctgaaactttgttacagGTTGTTGGTGATCTCATGGTTCAAATCCAGCGTATTCAAGACTTTACCCCTGAAGCTTCTTCTGGTCAGAAAGCGACTGC-TGGCTTGGAGCCTGAAGGCCCCatgtaattgagagcttcataaattttttgctagaaatcctcctgtttggggc Alignment from Spaln_aa2Genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCC-AAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agtaaagtatggtactgtggaactgtatccactctgaaactttgttacagGTTGTTGGTGATCTCATGGTTCAAATCCAGCGTATTCAAGACTTTACCCCTgAAGCTTCTTCTGGTCAGAAAGCGACTGCT-GGCTTGGAGCCTGAAGGCCCCATgtaattgagagcttcataaattttttgctagaaatcctcctgtttggggc Alignment from Spaln_nt2Genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCC-AAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agtaaagtatggtactgtggaactgtatccactctgaaactttgttacagGTTGTTGGTGATCTCATGGTTCAAATCCAGCGTATTCAAGACTTTACCCCTGAAGCTTCTTCTGGTCAGAAAGCGACTGC-TGGCTTGGAGCCTGAAGGCCCCATgtaattgagagcttcataaattttttgctagaaatcctcctgtttggggc Alignment from Pairagon GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCC-AAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agtaaagtatggtactgtggaactgtatccactctgaaactttgttacagGTTGTTGGTGATCTCATGGTTCAAATCCAGCGTATTCAAGACTTTACCCCTGAAGCTTCTTCTGGTCAGAAAGCGACTGC-TGGCTTGGAGCCTGAAGGCCCCATgtaattgagagcttcataaattttttgctagaaatcctcctgtttggggc Alignment from Exonerate_protein2genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agtaaagtatggtactgtggaactgtatccactctgaaactttgttacagGTTGTTGGTGATCTCATGGTTCAAATCCAGCGTATTCAAGACTTTACCCCTGAAGCTTCTTCTGGTCAGAAAGCGACTGCTGGCTTGGAGCCTGAAGGCCCCATgtaattgagagcttcataaattttttgctagaaatcctcctgtttggggc Alignment from Exonerate_coding2genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agtaaagtatggtactgtggaactgtatccactctgaaactttgttacagGTTGTTGGTGATCTCATGGTTCAAATCCAGCGTATTCAAGACTTTACCCCTGAAGCTTCTTCTGGTCAGAAAGCGACTGCTGGCTTGGAGCCTGAAGGCCCCATgtaattgagagcttcataaattttttgctagaaatcctcctgtttggggc Alignment from GeneWise GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agtaaagtatggtactgtggaactgtatccactctgaaactttgttacagGTTGTTGGTGATCTCATGGTTCAAATCCAGCGTATTCAAGACTTTACCCCTGAAGCTTCTTCTGGTCAGAAAGCGACTGCTGGCTTGGAGCCTGAAGGCCCCATgtaattgagagcttcataaattttttgctagaaatcctcctgtttggggc #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAAC-TGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagaCTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACCTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCA-TAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAAC-TGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagaCTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACCTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTC-ATAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACCTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCATAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAAC-TGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACCTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCA-TAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAA-CTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAGGTGG---- acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACCTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCA-TAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGGTAGCATGgtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAAC-TGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTC--AGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACCTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAT---AGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAAC-TGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTC--AGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACCTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAT---AGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACCTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCATAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCC-AGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCC-AGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCC-ACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCcACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGT-GTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCA-GGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCA-GGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCC-CACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCA-GGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from GeneWise cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagggaggcccaggtggggggcctgcgctgggcagggagccccacatccctgctccgagctggccgggagccccaggtgtttcccaacaagtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGA-AAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcataaaaaagaatttctggtccaaagactttttttttaaccattgacaggGATTATGCAGCTATTGTCTTCTTTGCCAATAACGACTTTGAAACTGGACAAAAAAAGGCTGCAGCACCTGAGCTTTGGGG-CTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGCGAGGCCCCAACTGATCCAggtgatcaaactccacacccctcatggaactagctaccttgtgtcagttta Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGA-AAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcataaaaaagaatttctggtccaaagactttttttttaaccattgacaggGATTATGCAGCTATTGTCTTCTTTGCCAATAACGACTTTGAAACTGGACAAAAAAAGGCTGCAGCACCTGAGCTTTGGG-GCTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGCGAGGCCCCAACTGATCCAggtgatcaaactccacacccctcatggaactagctaccttgtgtcagttta Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaagaatttctggtccaaagactttttttttaaccattgacagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACGACTTTGAAACTGGACAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGCGAGGCCCCAACTGATCCAGgtgatcaaactccacacccctcatggaactagctaccttgtgtcagttta Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAA-AGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaagaatttctggtccaaagactttttttttaaccattgacagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACGACTTTGAAACTGGACAAAAAAAGGCTGCAGCACCTGAGCTTT-GGGGCTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGCGAGGCCCCAACTGATCCAGgtgatcaaactccacacccctcatggaactagctaccttgtgtcagttta Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGA-AAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaagaatttctggtccaaagactttttttttaaccattgacagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACGACTTTGAAACTGGACAAAAAAAGGCTGCAGCACCTGAGCTTTGGGG-CTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGCGAGGCCCCAACTGATCCAGgtgatcaaactccacacccctcatggaactagctaccttgtgtcagttta Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaagaatttctggtccaaagactttttttttaaccattgacagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACGACTTTGAAACTGGACAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGCGAGGCCCCAACTGATCCAGgtgatcaaactccacacccctcatggaactagctaccttgtgtcagttta Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaagaatttctggtccaaagactttttttttaaccattgacagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACGACTTTGAAACTGGACAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGCGAGGCCCCAACTGATCCAGgtgatcaaactccacacccctcatggaactagctaccttgtgtcagttta Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaagaatttctggtccaaagactttttttttaaccattgacagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACGACTTTGAAACTGGACAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGCGAGGCCCCAACTGATCCAGgtgatcaaactccacacccctcatggaactagctaccttgtgtcagttta #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAAC-CAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGG-TATCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAAC-CAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGG-TATCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAAC-CAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACcCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTATCAAG-GGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAAC-CAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGG-TATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAA-CCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGG-TATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAAC-CAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAG--GTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGT---ATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAA---CCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAG--AACCCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGT-ATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTG-AATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGCAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATC-GTCACTGCTGGAGCTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTG-AATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGCAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAAT-CGTCACTGCTGGAGCTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGCAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCGTCACTGCTGGAGCTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTG-AATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGCAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATC-GTCACTGCTGGAGCTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTG-AATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGCAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATC-GTCACTGCTGGAGCTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGCAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCGTCACTGCTGGAGCTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGC---AATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGCAA--TGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCG-TCACTGCTGGAGCTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGCAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCGTCACTGCTGGAGCTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct #### Gal_ID62_4 --> 2 - 1 Original Alignment gaAGTGTTGATGTGCCCCTGCCTGAG-AGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaAGTGTTGATGTGCCCCTGCCTGAGCAGTATCATTGTTCGCACTATAATGGAGTTTC-CAGTTTCTTGCACCTTAAAggtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from CESAR gaAGTGTTGATGTGCCCCTGCCTGAG-AGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaAGTGTTGATGTGCCCCTGCCTGAGCAGTATCATTGTTCGCACTATAATGGAGTTT-CCAGTTTCTTGCACCTTAAAggtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Spaln_aa2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGCAGTATCATTGTTCGCACTATAATGGAGTTTCCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Spaln_nt2Genome GAAGTGTTGATGTGCCCCTGCCTGAG-AGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGCAGTATCATTGTTCGCACTATAATGGAGTTTC-CAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Pairagon GAAGTGTTGATGTGCCCCTGCCTGAG-AGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGCAGTATCATTGTTCGCACTATAATGGAGTTTC-CAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Exonerate_protein2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGCAGTATCATTGTTCGCACTATAATGGAGTTTCCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Exonerate_coding2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGCAGTATCATTGTTCGCACTATAATGGAGTTTCCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from GeneWise GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGCAGTATCATTGTTCGCACTATAATGGAGTTTCCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGC-TTCCTTCTGTGGAggtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGC-TTCCTTCTGTGGAggtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGCGG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGcATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTCCTTCTGTGGAGGTCAgtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGC-TTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAG-ATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGC-TTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGCATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcaggtGACACACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGC-GGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from CESAR gtGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcaggtGACACACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTG-CGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Spaln_aa2Genome CTTGGTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTC---CATCCTGTATCAGATGCTGGGGCCCATGGAGTGCG-GTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTC-ACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGC-GGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Pairagon GTGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGC-GGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Exonerate_protein2genome GTGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTG--CAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCG---GTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Exonerate_coding2genome GTGATGCACTCCTTATT-CACCCTGTATCGGATGCTGGGGCCCACGGAGTG--CAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCG---GTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from GeneWise CTTGGTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTA---TTCCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCG-GTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCAG-AACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from CESAR GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCA-GAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATcCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCAGA-ACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCAG-AACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCAG-AACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCAGAACTTTGAGCAGTGtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCAGAACTTTGAGCAGTGtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCAGAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCCAGCGGGGTGGAACCATTGTGCCTCGAT-GATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from CESAR ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCCAGCGGGGTGGAACCATTGTGCCTCGA-TGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Spaln_aa2Genome ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCcCAGCGGGGTGGAACCATTGTGCCTCGATG-ATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Spaln_nt2Genome ATCCCCGTGTTCC-AGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCCAGCGGGGTGGAACCATTGTGCCTCGAT-GATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Pairagon ATCCCCGTGTT-CCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCCAGCGGGGTGGAACCATTGTGCCTCGAT-GATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCCAGCGGGGTGGAACCATTGTGCCTCGATGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCCAGCGGGGTGGAACCATTGTGCCTCGATGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from GeneWise -----------------------AGTATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtagGCTTACTCTTTCTTCTTCTCCCTAAGATCCCTGTGTTCCCAGCGGGGTGGAACCATTGTGCCTCGATGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAAGGCCACCTTGAGACACCT-ATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tctgcttgctcctcattttgccaagtggtgtgtttatttctgtttggcagcTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGAA-GCCAGCTGCTGTGGTGCTCCAGACAAAAggtaagggatagctgcagcaatgaattgagagaaaaagcagtaggaatcac Alignment from CESAR tTCAGCAGACCCCAAAGGCCACCTTGAGACACCT-ATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tctgcttgctcctcattttgccaagtggtgtgtttatttctgtttggcagcTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTG-GAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtaagggatagctgcagcaatgaattgagagaaaaagcagtaggaatcac Alignment from Spaln_aa2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tctgcttgctcctcattttgccaagtggtgtgtttatttctgtttggcagCTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagggatagctgcagcaatgaattgagagaaaaagcagtaggaatcac Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCT-ATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tctgcttgctcctcattttgccaagtggtgtgtttatttctgtttggcagCTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGG-AAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagggatagctgcagcaatgaattgagagaaaaagcagtaggaatcac Alignment from Pairagon TTCAGCAGACCCCAAAGGCCACCTTGAGACACCT-ATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tctgcttgctcctcattttgccaagtggtgtgtttatttctgtttggcagCTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGG-AAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagggatagctgcagcaatgaattgagagaaaaagcagtaggaatcac Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tctgcttgctcctcattttgccaagtggtgtgtttatttctgtttggcagCTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagggatagctgcagcaatgaattgagagaaaaagcagtaggaatcac Alignment from Exonerate_coding2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tctgcttgctcctcattttgccaagtggtgtgtttatttctgtttggcagCTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagggatagctgcagcaatgaattgagagaaaaagcagtaggaatcac Alignment from GeneWise TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tctgcttgctcctcattttgccaagtggtgtgtttatttctgtttggcagCTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagggatagctgcagcaatgaattgagagaaaaagcagtaggaatcac #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGACGGCCTTCATTTTCCCAGCGGAGGGTGGTTGT-AACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCagtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGACGGCCTTCATTTTCCCAGCGGAGGGTGGTTG-TAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCagtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGACGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGACGGCCTTCATTTTCCCAGCGGAGGGTGGTTGT-AACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGACGGCCTTCATTTTCCCAGCGGAGGGTGGTTGT-AACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGACGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGACGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGACGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGG-ATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from CESAR ctGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGG-ATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGcAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGA-TTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGG-ATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Pairagon CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGG-ATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAA gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGG-AAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAA gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from GeneWise -TTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctgacaaaaagTTCACCAGGCAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATG-GGATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAACGCGAGG-GACACCATCAAACcggtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from CESAR GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAACGCGAG-GGACACCATCAAACcggtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacaggtagaagATT------TTCGTGGACCCCAATGGCAAGATCTCTTTACAACGCGAGGG-ACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Spaln_nt2Genome GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAACGCGAGG-GACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Pairagon GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAACGCGAGG-GACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Exonerate_protein2genome GTAGAAGAT-TTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAG---GAGACACCATCCA agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAACGCGAGGGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Exonerate_coding2genome GTAGAAGAT-TTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAG---GAGACACCATCCA agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTCGTGGACCCCAATGGCAAGATCTCTTTACAACGCGAGGGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCGA-- agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacaggtagaagATT------TTCGTGGACCCCAATGGCAAGATCTCTTTACAACGCGAGGGACACCATCAAACCGGTATgtgttgattaataattaaggcctagagaagtagttgtaataagttg #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCAC-GCAGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from CESAR CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCA-CGCAGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAcGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACG-CAGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCAC-GCAGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Pairagon CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCAC-GCAGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCA--CTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCACGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACG---CAGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGA---AAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCA--CGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACG-CAGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from GeneWise cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagcaatgtgacccacgaaaagatgatcacagaaagcaagttcctccagctggaatcacgcaggagctcatgaaggtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCC-TTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCCTTCATTGTTCGAGATGCTGCCCACATCACGC-TGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCC-TTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCCTTCATTGTTCGAGATGCTGCCCACATCA-CGCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCCTTCATTGTTCGAGATGCTGCCCACATCACGCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTC-CTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCCTTCATTGTTCGAGATGCTGCCCACATCA-CGCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGT-CCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCCTTCATTGTTCGAGATGCTGCCCACATCA-CGCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCCTTCATTGTTCGAGATGCTGCCCACATCACGCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCCTTCATTGTTCGAGATGCTGCCCACATCACGCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCCTTCATTGTTCGAGATGCTGCCCACATCACGCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTG-GTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGCGTGCACGATCTGCAGAAGCTAGATGCCCTGG-GTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTG-GTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGCGTGCACGATCTGCAGAAGCTAGATGCCCTG-GGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGCGTGCACGATCTGCAGAAGCTAGATGCCCTGGGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTG-GTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGCGTGCACGATCTGCAGAAGCTAGATGCCCTGG-GTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTG-GTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGCGTGCACGATCTGCAGAAGCTAGATGCCCTGG-GTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGCGTGCACGATCTGCAGAAGCTAGATGCCCTGGGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGCGTGCACGATCTGCAGAAGCTAGATGCCCTGGGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGCGTGCACGATCTGCAGAAGCTAGATGCCCTGGGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTG-ACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTCTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGG-TGGGATGGAAGAGACCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from CESAR GTGCTGTTTCCTCTCCTG-ACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTCTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATG-TGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTG-ACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTcTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGT-GGGATGGAAGAGACCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGA-CCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTCTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGT-GGTGGGATGGAAGAGACCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Pairagon GTGCTGTTTCCTCTCCTGA-CCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTCTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGT-GGTGGGATGGAAGAGACCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTCTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTCTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTCTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCC-ACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACT-CATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from CESAR GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCC-ACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAG-ACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCC-ACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGAC-TCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Pairagon GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGT-CCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGAC-TCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTC---CACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTG--TCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTC-ATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGA-GGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGACGGCCCCACTGCCCTCTGGGAGATCACATGGG-GCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGA-GGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGACGGCCCCACTGCCCTCTGGGAGATCACATGG-GGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGACGGCCCCACTGCCCTCTGGGAGATCACATGGGGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGA-GGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGACGGCCCCACTGCCCTCTGGGAGATCACATGGG-GCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGA-GGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGACGGCCCCACTGCCCTCTGGGAGATCACATGGG-GCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGACGGCCCCACTGCCCTCTGGGAGATCACATGGGGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGACGGCCCCACTGCCCTCTGGGAGATCACATGGGGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGACGGCCCCACTGCCCTCTGGGAGATCACATGGGGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat #### Gbf1_ID9819_38 --> 2 - 1 Original Alignment acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGG-ATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg cagggtggagaaagaaacaccctgagttagcatcctggggtccctgacagacCCAATGCCTGCTGAACCACATAGTCAGAAGCCT---GCATCCACTCACCTAACTTCTGCTGCCGGTGACCCCAGGCATGCCTGGCCATCCACCTCTCCCAGAGATAC-CTCAGAAATGGGGGTTTGTggttagatactctaagcacaacctgaagaagtctaagcaacatcccatgcc Alignment from CESAR acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGG-ATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg cagggtggagaaagaaacaccctgagttagcatcctggggtccctgacagacCCAATGCCTGCTGAACCACATAGTCAGAAGCCT---GCATCCACTCACCTAACTTCTGCTGCCGGTGACCCCAGGCATGCCTGGCCATCCACCTCTCCCAGAGATAC-CTCAGAAATGGGGGTTTGTggttagatactctaagcacaacctgaagaagtctaagcaacatcccatgcc Alignment from Spaln_aa2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGG-ATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtggagaaagaaacaccctgagttagcatcctggggtccctgacagACCCAATGCCTGCTGAACCACATAGTCAGAAGCCT---GCATCCACTCACCTAACTTCTGCTGCCGGTGACCCCAGGcATGCCTGGCCATCCACCTCTCCCAGAGATACCTCA-GAAATGGGGGTTTGTGgttagatactctaagcacaacctgaagaagtctaagcaacatcccatgcc Alignment from Spaln_nt2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGG-ATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtggagaaagaaacaccctgagttagcatcctggggtccctgacagACCCAATGCCTGCTGAACCACATAGTCAGAAGCCT---GCATCCACTCACCTAACTTCTGCTGCCGGTGACCCCAGGCATGCCTGGCCATCCACCTCTCCCAGAGATACC-TCAGAAATGGGGGTTTGTGgttagatactctaagcacaacctgaagaagtctaagcaacatcccatgcc Alignment from Pairagon ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGG-ATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtggagaaagaaacaccctgagttagcatcctggggtccctgacagACCCAATGCCTGCTGAACCACATAGTCAGAAGCCT---GCATCCACTCACCTAACTTCTGCTGCCGGTGACCCCAGGCATGCCTGGCCATCCACCTCTCCCAGAGATA-CCTCAGAAATGGGGGTTTGTGgttagatactctaagcacaacctgaagaagtctaagcaacatcccatgcc Alignment from Exonerate_protein2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGG-ATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtggagaaagaaacaccctgagttagcatcctggggtccctgacagACCCAATGCCTGCTGAACCACATAGTCAGAAGCCT---GCATCCACTCACCTAACTTCTGCTGCCGGTGACCCCAGGCATGCCTGGCCATCCACCTCTCCCAGAGATACCTCAGAAATGGGGGTTTGTGGttagatactctaagcacaacctgaagaagtctaagcaacatcccatgcc Alignment from Exonerate_coding2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGG-ATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtggagaaagaaacaccctgagttagcatcctggggtccctgacagACCCAATGCCTGCTGAACCACATAGTCAGAAGCCT---GCATCCACTCACCTAACTTCTGCTGCCGGTGACCCCAGGCATGCCTGGCCATCCACCTCTCCCAGAGATACCTCAGAAATGGGGGTTTGTGGttagatactctaagcacaacctgaagaagtctaagcaacatcccatgcc Alignment from GeneWise ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtggagaaagaaacaccctgagttagcatcctggggtccctgacagACCCAATGCCTGCTGAACCACATAGTCAGAAGCCT---GCATCCACTCACCTAACTTCTGCTGCCGGTGACCCCAGGCATGCCTGGCCATCCACCTCTCCCAGAGATACCTCAGAAATGGGGGTTTGTGgttagatactctaagcacaacctgaagaagtctaagcaacatcccatgcc #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGG-GATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGAGAAAAGAGGACTGGACCTTC-GGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGG-GATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGAGAAAAGAGGACTGGACCTT-CGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGAGAAAAGAGGACTGGACCTTCGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGG-GATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGAGAAAAGAGGACTGGACCTTC-GGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGG-GATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGAGAAAAGAGGACTGGACCTTC-GGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGAGAAAAGAGGACTGGACCTTCGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGAGAAAAGAGGACTGGACCTTCGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGAGAAAAGAGGACTGGACCTTCGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAA-GGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAACGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCC-TTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAaggtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from CESAR GAATATTTAGAA-GGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAACGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCC-TTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAaggtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Spaln_aa2Genome GAATATTTAGAA-GGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAcGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCT-TCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Spaln_nt2Genome GAATATTTAGAA-GGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAACGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCC-TTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Pairagon GAATATTTAGAA-GGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAACGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCC-TTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAACGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Exonerate_coding2genome GAATATTTAGAA-GGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAACGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTT-CTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAACGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAA-CTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTC---TTTTGGGAACCTGCTGCCCACCACGTTGCTGGTGGGCTTCT-CCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAA-CTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACCTGCTGCCCACCACGTTGCTGGTGGGCT-TCTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAA-CTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAAcCTGCTGCCCACCACGTTGCTGGTGGGCTTCTC-CGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAAC-TGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCT---TTTGGGAACCTGCTGCCCACCACGTTGCTGGTGGGCTTCTC-CGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAA-CTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCT---TTTGGGAACCTGCTGCCCACCACGTTGCTGGTGGGCTTC-TCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACCTGCTGCCCACCACGTTGCTGGTGGGCTTCTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACCTGCTGCCCACCACGTTGCTGGTGGGCTTCTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACCTGCTGCCCACCACGTTGCTGGTGGGCTTCTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTA-CCTTTGGTCTGGGGCAAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTA-CCTTTGGTCTGGGGCAAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCTTTGGTCTGGGGCAAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTA-CCTTTGGTCTGGGGCAAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTA-CCTTTGGTCTGGGGCAAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCTTTGGTCTGGGGCAAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCTTTGGTCTGGGGCAAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCTTTGGTCTGGGGCAAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttttaagatcgtgtgacttttatttcgcagtcatgtctactttacccagGTGATTCTGATGGTGCGGACTCCCTGGATCGGCAAAGACCCAGTGGGCAC-GAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgaggattgggaaagggtgattagtggaggcgctggaggtc Alignment from CESAR GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttttaagatcgtgtgacttttatttcgcagtcatgtctactttacccagGTGATTCTGATGGTGCGGACTCCCTGGATCGGCAAAGACCCAGTGGGCA-CGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgaggattgggaaagggtgattagtggaggcgctggaggtc Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttttaagatcgtgtgacttttatttcgcagtcatgtctactttacccagGTGATTCTGATGGTGCGGACTCCCTGGATCGGCAAAGACCCAGTGGGCACGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgaggattgggaaagggtgattagtggaggcgctggaggtc Alignment from Spaln_nt2Genome GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttttaagatcgtgtgacttttatttcgcagtcatgtctactttacccagGTGATTCTGATGGTGCGGACTCCCTGGATCGGCAAAGACCCAGTGGGCAC-GAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgaggattgggaaagggtgattagtggaggcgctggaggtc Alignment from Pairagon GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttttaagatcgtgtgacttttatttcgcagtcatgtctactttacccagGTGATTCTGATGGTGCGGACTCCCTGGATCGGCAAAGACCCAGTGGGCAC-GAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgaggattgggaaagggtgattagtggaggcgctggaggtc Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttttaagatcgtgtgacttttatttcgcagtcatgtctactttacccagGTGATTCTGATGGTGCGGACTCCCTGGATCGGCAAAGACCCAGTGGGCACGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgaggattgggaaagggtgattagtggaggcgctggaggtc Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttttaagatcgtgtgacttttatttcgcagtcatgtctactttacccagGTGATTCTGATGGTGCGGACTCCCTGGATCGGCAAAGACCCAGTGGGCACGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgaggattgggaaagggtgattagtggaggcgctggaggtc Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttttaagatcgtgtgacttttatttcgcagtcatgtctactttacccagGTGATTCTGATGGTGCGGACTCCCTGGATCGGCAAAGACCCAGTGGGCACGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgaggattgggaaagggtgattagtggaggcgctggaggtc #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGA-GGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagtgGGTGGGCAGCGCCGACGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGG-GCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from CESAR tgGGCGGGCAGCGCCGA-GGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagtgGGTGGGCAGCGCCGACGGCTACGACAACCGGGCCTATGGGCAGCAGTACT-GGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGA-GGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAcGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGG-CAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGA-GGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGACGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGG-CAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Pairagon TGGGCGGGCAGCGCCGA-GGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGACGGCTACGACAACCGGGCCTATGGGCAGCAGTACT-GGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGA-GGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGACGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGCAGTCTGGAACCAGAGGGGtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGA-GGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGACGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGCAGTCTGGAACCAGAGGGGtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from GeneWise GCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG--------- atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagtgggtgggcagCGCCGACGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGCAGTCTGGAACCAGAGGGGTGGGGGCATgtctttttctactcctccctccggcctgtgaaggatttga #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTG-GTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGCGTGACCCCTTGTTACTATCATGGCCACATGAGCA-TGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTG-GTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGCGTGACCCCTTGTTACTATCATGGCCACATGAGC-ATGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGCGTGACCCCTTGTTACTATCATGGCCACATGAGCATGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTG-GTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGCGTGACCCCTTGTTACTATCATGGCCACATGAGCA-TGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTG-GTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGCGTGACCCCTTGTTACTATCATGGCCACATGAGCA-TGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGCGTGACCCCTTGTTACTATCATGGCCACATGAGCATGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGCGTGACCCCTTGTTACTATCATGGCCACATGAGCATGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGCGTGACCCCTTGTTACTATCATGGCCACATGAGCATGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGC-CAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggagatgctgacaacctgtttttcagAGGCGACCTAAAAGCAGCCCAAAACATACCAGTGCCACAAGCAAGGAGCCAGAGCACCTCGG-GCCTGCCAGGGGTTGTAGGGAGACAgtaggagctaggccctgttgacagaatagggtgtcaccatctaccttccc Alignment from CESAR AGGAGACCCAAGAGCAGC-CAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggagatgctgacaacctgtttttcagAGGCGACCTAAAAGCAGCCCAAAACATACCAGTGCCACAAGCAAGGAGCCAGAGCACCTCG-GGCCTGCCAGGGGTTGTAGGGAGACAgtaggagctaggccctgttgacagaatagggtgtcaccatctaccttccc Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGC-CAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggagatgctgacaacctgtttttcagAGGCGACCTAAAAGCAGCcCAAAACATACCAGTGCCACAAGCAAGGAGCCAGAGCACCTCGGG-CCTGCCAGGGGTTGTAGGGAGACAgtaggagctaggccctgttgacagaatagggtgtcaccatctaccttccc Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCC-AAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggagatgctgacaacctgtttttcagAGGCGACCTAAAAGCAGCCCAAAACATACCAGTGCCACAAGCAAGGAGCCAGAGCACCTC-GGGCCTGCCAGGGGTTGTAGGGAGACAgtaggagctaggccctgttgacagaatagggtgtcaccatctaccttccc Alignment from Pairagon AGGAGACCCAAGAGCAG-CCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggagatgctgacaacctgtttttcagAGGCGACCTAAAAGCAGCCCAAAACATACCAGTGCCACAAGCAAGGAGCCAGAGCACCTCGG-GCCTGCCAGGGGTTGTAGGGAGACAgtaggagctaggccctgttgacagaatagggtgtcaccatctaccttccc Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGC-CAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCA--GTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggagatgctgacaacctgtttttcagAGGCGACCTAAAAGCAGCCCAAAACATACCAGTGCCACAAGCAAGGAGCCAGAGCACCTCGGG---CCTGCCAGGGGTTGTAGGGAGACAgtaggagctaggccctgttgacagaatagggtgtcaccatctaccttccc Alignment from Exonerate_coding2genome AGGAGACCCAAGAGCAGC-CAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCA--GTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggagatgctgacaacctgtttttcagAGGCGACCTAAAAGCAGCCCAAAACATACCAGTGCCACAAGCAAGGAGCCAGAGCACCTCGGG---CCTGCCAGGGGTTGTAGGGAGACAgtaggagctaggccctgttgacagaatagggtgtcaccatctaccttccc Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggagatgctgacaacctgtttttcagAGGCGACCTAAAAGCAGCCCAAAACATACCAGTGCCACAAGCAAGGAGCCAGAGCACCTCGGGCCTGCCAGGGGTTGTAGGGAGACAgtaggagctaggccctgttgacagaatagggtgtcaccatctaccttccc #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCT-GAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGG-GGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from CESAR GAAGAGCAACAGCGCCTGGCT-GAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAG-GGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTG-AGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGG-GGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Pairagon GAAGAGCAACAGCGCCTGGCT-GAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGG-GGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctaggGAGATGCAGGAGAGAGAGCAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAA-GGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from CESAR gGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctaggGAGATGCAGGAGAGAGAGCAAAGCCTTGAGACTCCAAAAGGAACGACTTC-AAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGcAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAG-GAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGCAAAGCCTTGAGACTCCAAAAGGAACGACTTCA-AAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Pairagon GGAGATGCAGGAGAGAGAG-AAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGCAAAGCCTTGAGACTCCAAAAGGAACGACTTCA-AAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGCAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGCAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGCAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAG-CATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCCATCAGCTTCCTGCCCCCAAGTGGACAG-GTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTggtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAG-CATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCCATCAGCTTCCTGCCCCCAAGTGGACA-GGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTggtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCCATCAGCTTCCTGCCCCCAAGTGGACAGGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGC-ATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCCATCAGCTTCCTGCCCCCAAGTGGACAG-GTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAG-CATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCCATCAGCTTCCTGCCCCCAAGTGGACAG-GTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCCATCAGCTTCCTGCCCCCAAGTGGACAGGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCCATCAGCTTCCTGCCCCCAAGTGGACAGGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCCATCAGCTTCCTGCCCCCAAGTGGACAGGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctaggtCGGCACAATCTAAGATTAATTATGCGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAA-ACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctaggtCGGCACAATCTAAGATTAATTATGCGAATATTTACCTTATGGAAGTCTACGAGACTATCTCC-AAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGcGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCA-AAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTTACCTTATGGAAGTCTACGAGACTATCTCC-AAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTTACCTTATGGAAGTCTACGAGACTATCTCC-AAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTC--CAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCA---AAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTC--CAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCA---AAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgtgtatccacaggtgacctaacttatcttttggtgatcctcgccagtGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCCACACTGCAGTATC-CAACCTCATCAATTACTACAAGgtaagagggcgtgactacaaggtgaggcgacatgctcagggaacaattga Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgtgtatccacaggtgacctaacttatcttttggtgatcctcgccagtGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCCACACTGCAGTAT-CCAACCTCATCAATTACTACAAGgtaagagggcgtgactacaaggtgaggcgacatgctcagggaacaattga Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgtgtatccacaggtgacctaacttatcttttggtgatcctcgccagTGAGATCAGTGAAATTACTAGTATTAAGcAAAGAAGATGTCATCTCCACACTGCAGTATCC-AACCTCATCAATTACTACAAGgtaagagggcgtgactacaaggtgaggcgacatgctcagggaacaattga Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgtgtatccacaggtgacctaacttatcttttggtgatcctcgccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCCACACTGCAGTATC-CAACCTCATCAATTACTACAAGgtaagagggcgtgactacaaggtgaggcgacatgctcagggaacaattga Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgtgtatccacaggtgacctaacttatcttttggtgatcctcgccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCCACACTGCAGTATC-CAACCTCATCAATTACTACAAGgtaagagggcgtgactacaaggtgaggcgacatgctcagggaacaattga Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgtgtatccacaggtgacctaacttatcttttggtgatcctcgccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCCACACTGCAGTATCCAACCTCATCAATTACTACAAGgtaagagggcgtgactacaaggtgaggcgacatgctcagggaacaattga Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgtgtatccacaggtgacctaacttatcttttggtgatcctcgccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCCACACTGCAGTATCCAACCTCATCAATTACTACAAGgtaagagggcgtgactacaaggtgaggcgacatgctcagggaacaattga Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgtgtatccacaggtgacctaacttatcttttggtgatcctcgccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCCACACTGCAGTATCCAACCTCATCAATTACTACAAGgtaagagggcgtgactacaaggtgaggcgacatgctcagggaacaattga #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCC-CTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa accaccccacttcaacatcccctcttccctgtttcttccctatcttacaggcTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACT-GTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAA-CCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa accaccccacttcaacatcccctcttccctgtttcttccctatcttacaggcTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTAC-TGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAA-CCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAAcCCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTG-TCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAG-AAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACT-GTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAA-CCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACT-GTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAA-CCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTAC--TGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTG---TCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACC---CCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAA--CCCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTG-TCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCC-CTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTG-TCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATC-TTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ctgtattgcctaacttggcacccctactctgctttcaccatttttttcagGAAAAAGAGTCCACAGAAGATTACAACATAGCCTGCATTCTTAACTCTACCTCCTTACCAACGCCGCGGCT-TGGTAGGTTGCTTATTGAGTTCagtgataatgcactacctggtcagggtctggcaggatgaggttgggttggt Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATC-TTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ctgtattgcctaacttggcacccctactctgctttcaccatttttttcagGAAAAAGAGTCCACAGAAGATTACAACATAGCCTGCATTCTTAACTCTACCTCCTTACCAACGCCGCGGC-TTGGTAGGTTGCTTATTGAGTTCagtgataatgcactacctggtcagggtctggcaggatgaggttgggttggt Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctgtattgcctaacttggcacccctactctgctttcaccatttttttcagGAAAAAGAGTCCACAGAAGATTACAACATAGCCTGCATTCTTAACTCTACCTCCTTACCAACGCCGCGGCTTGGTAGGTTGCTTATTGAGTTCAgtgataatgcactacctggtcagggtctggcaggatgaggttgggttggt Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCAT-CTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctgtattgcctaacttggcacccctactctgctttcaccatttttttcagGAAAAAGAGTCCACAGAAGATTACAACATAGCCTGCATTCTTAACTCTACCTCCTTACCAACGCCGCGGCT-TGGTAGGTTGCTTATTGAGTTCAgtgataatgcactacctggtcagggtctggcaggatgaggttgggttggt Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCA-TCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctgtattgcctaacttggcacccctactctgctttcaccatttttttcagGAAAAAGAGTCCACAGAAGATTACAACATAGCCTGCATTCTTAACTCTACCTCCTTACCAACGCCGCGGCT-TGGTAGGTTGCTTATTGAGTTCAgtgataatgcactacctggtcagggtctggcaggatgaggttgggttggt Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctgtattgcctaacttggcacccctactctgctttcaccatttttttcagGAAAAAGAGTCCACAGAAGATTACAACATAGCCTGCATTCTTAACTCTACCTCCTTACCAACGCCGCGGCTTGGTAGGTTGCTTATTGAGTTCAgtgataatgcactacctggtcagggtctggcaggatgaggttgggttggt Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctgtattgcctaacttggcacccctactctgctttcaccatttttttcagGAAAAAGAGTCCACAGAAGATTACAACATAGCCTGCATTCTTAACTCTACCTCCTTACCAACGCCGCGGCTTGGTAGGTTGCTTATTGAGTTCAgtgataatgcactacctggtcagggtctggcaggatgaggttgggttggt Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctgtattgcctaacttggcacccctactctgctttcaccatttttttcagGAAAAAGAGTCCACAGAAGATTACAACATAGCCTGCATTCTTAACTCTACCTCCTTACCAACGCCGCGGCTTGGTAGGTTGCTTATTGAGTTCAgtgataatgcactacctggtcagggtctggcaggatgaggttgggttggt #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCC-CCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcaactactaacatagtcaccctgttttcctcacagGATTCTCAGGACAGCTCAGATGGAATACCAACAGCTCCACGAATGACGGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCCATACCCTCAAGAGCTCACCACCTTACCCGTCCTCTACCTGT-TGAATTTTGCCTGAAGTACGGCCATAGTCTCAAGTGTCTTAAACGCCACCTTgtaacaggtgtcttgggtgttggtctgtcctgagcaccctcattggtgac Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCC-CCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcaactactaacatagtcaccctgttttcctcacagGATTCTCAGGACAGCTCAGATGGAATACCAACAGCTCCACGAATGACGGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCCATACCCTCAAGAGCTCACCACCTTACCCGTCCTCTACCTG-TTGAATTTTGCCTGAAGTACGGCCATAGTCTCAAGTGTCTTAAACGCCACCTTgtaacaggtgtcttgggtgttggtctgtcctgagcaccctcattggtgac Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcaactactaacatagtcaccctgttttcctcacagGATTCTCAGGACAGCTCAGATGGAATACCAACAGCTCCACGAATGACGGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCCATACCCTCAAGAGCTCACCACCTTACCCGTCCTCTACCTGTTGAATTTTGCCTGAAGTACGGCCATAGTCTCAAGTGTCTTAAACGCCACCTTgtaacaggtgtcttgggtgttggtctgtcctgagcaccctcattggtgac Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCG-TACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcaactactaacatagtcaccctgttttcctcacagGATTCTCAGGACAGCTCAGATGGAATACCAACAGCTCCACGAATGACGGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCCATACCCTCAAGAGCTCACCACCTTACCCGTCCTCTACCTGT-TGAATTTTGCCTGAAGTACGGCCATAGTCTCAAGTGTCTTAAACGCCACCTTgtaacaggtgtcttgggtgttggtctgtcctgagcaccctcattggtgac Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCT-CCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTT--------------------------------------------------- gcacaccccagttctcaactactaacatagtcaccctgttttcctcacagGATTCTCAGGACAGCTCAGATGGAATACCAACAGCTCCACGAATGACGGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCCATACCCTCAAGAGCTCACCACCTTACCCGTCCTCTACCTGT-TGAATTTTGCCTGAAGTACGGCCATAGTCTCAAGTGTCTTAAACGCCACCTTGTAACAGGTGTCTTGGGTGTTGGTCTGTCCTGAGCACCCTCATTGGTGAC Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCC-CCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTG--TGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcaactactaacatagtcaccctgttttcctcacagGATTCTCAGGACAGCTCAGATGGAATACCAACAGCTCCACGAATGACGGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCCATACCCTCAAGAGCTCACCACCTTACCCGTCCTCTACCTGTT---GAATTTTGCCTGAAGTACGGCCATAGTCTCAAGTGTCTTAAACGCCACCTTgtaacaggtgtcttgggtgttggtctgtcctgagcaccctcattggtgac Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCC-CCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTG--TGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcaactactaacatagtcaccctgttttcctcacagGATTCTCAGGACAGCTCAGATGGAATACCAACAGCTCCACGAATGACGGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCCATACCCTCAAGAGCTCACCACCTTACCCGTCCTCTACCTGTT---GAATTTTGCCTGAAGTACGGCCATAGTCTCAAGTGTCTTAAACGCCACCTTgtaacaggtgtcttgggtgttggtctgtcctgagcaccctcattggtgac Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcaactactaacatagtcaccctgttttcctcacagGATTCTCAGGACAGCTCAGATGGAATACCAACAGCTCCACGAATGACGGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCCATACCCTCAAGAGCTCACCACCTTACCCGTCCTCTACCTGTTGAATTTTGCCTGAAGTACGGCCATAGTCTCAAGTGTCTTAAACGCCACCTTgtaacaggtgtcttgggtgttggtctgtcctgagcaccctcattggtgac #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGCGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTG-CTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGCGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCT-GCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAA---AGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGcGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGCTCTCCCAAAAGGGAGGTGGTGTgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGCGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCC-ACCCTGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGCGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCT-GCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGT aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGCGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGT aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGCGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGCGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCCGAAGTGACCAGTTCACTACAGATTCAGGCTT-GCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCCGAAGTGACCAGTTCACTACAGATTCAGG-CTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCCGAAGTGACCAGTTCACTACAGATTCAGGCTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTT-GAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCCGAAGTGACCAGTTCACTACAGATTCAGGC-TTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTT-TGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCCGAAGTGACCAGTTCACTACAGATTCAGGC-TTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCCGAAGTGACCAGTTCACTACAGATTCAGGCTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCCGAAGTGACCAGTTCACTACAGATTCAGGCTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTAC-CCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCAAGGGAAC-CGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTAC-CCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCAAGGGAA-CCGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCT-GCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCtGCGCTCCGGGAGGAAGCCCCAAGGGAACC-GTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACC-CTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCAAGGGAAC-CGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTA-CCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCAAGGGAAC-CGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACCGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACCGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACCGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatag------GTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAAGTATACTTGGTCACTTAAGTC-GAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatag------GTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAAGTATACTTGGTCACTTAAGT-CGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatag------GTGCAAATTTTGGATTCACAGTCTGTTTTGTTGcAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCG-AAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Spaln_nt2Genome -TGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAAGTATACTTGGTCACTTAAGT-CGAAAAGCTCTGGCCAGGT---ACAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Pairagon GCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatag-----GTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAAGTATACTTGGTCACTTAAGT-CGAAAAGCTCTGGCCAGGT---ACAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGGTT ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAGTAgtgagaagcgaaaagaaactaataacattctaagatcctcacataca #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAA-TACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCAGGGCAAAGCTGAAGAGGTGGAACTACTATTACCAGCGGGGCCTGAAGATCTATGCCACAC-CCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAA-TACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCAGGGCAAAGCTGAAGAGGTGGAACTACTATTACCAGCGGGGCCTGAAGATCTATGCCACA-CCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCAGGGCAAAGCTGAAGAGGTGGAACTACTATTACCAGCGGGGCCTGAAGATCTATGCCACACCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAA-TACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCAGGGCAAAGCTGAAGAGGTGGAACTACTATTACCAGCGGGGCCTGAAGATCTATGCCACAC-CCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAA-TACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCAGGGCAAAGCTGAAGAGGTGGAACTACTATTACCAGCGGGGCCTGAAGATCTATGCCACAC-CCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCAGGGCAAAGCTGAAGAGGTGGAACTACTATTACCAGCGGGGCCTGAAGATCTATGCCACACCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCAGGGCAAAGCTGAAGAGGTGGAACTACTATTACCAGCGGGGCCTGAAGATCTATGCCACACCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGA-CTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from CESAR CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGA-CTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Spaln_aa2Genome CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATAcCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGAC-TACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Spaln_nt2Genome CTCTGTGTGATAC-TAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGA-CTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Pairagon CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGA-CTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Exonerate_protein2genome CTCTGTGTGATA-CTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAG--ACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGAC---TACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Exonerate_coding2genome CTCTGTGTGATACT---AGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATA--CCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGAC-TACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACCTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTC-CAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACCTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCT-CCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAAcCTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCC-AACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACCTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTC-CAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACCTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTC-CAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTAC tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACCTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCCAACTACTttcgggtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTAC tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACCTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCCAACTACTttcgggtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACCTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCGGCAACACAGAG-ACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCGGCAACACAGAG-ACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCGGCAACACAGAGACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCGGCAACACAGAGA-CTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCGGCAACACAGAGA-CTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCGGCAACACAGAGACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCGGCAACACAGAGACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCGGCAACACAGAGACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg #### Lgals12_ID2190_3 --> 1 - 0 Original Alignment gTTTCAGGTGGACTTCCAGTGT-GGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttaggTTTCAGGTTGACTTCCAATGTCAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCATT-CAGCCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGTCAG---GGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from CESAR gTTTCAGGTGGACTTCCAGTGT-GGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttaggTTTCAGGTTGACTTCCAATGTCAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTC-CATTCAGCCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Spaln_aa2Genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTCAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCATTCAGCCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Spaln_nt2Genome GTTTCAGGTGGACTTCCAGTGTG-GGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTCAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCC-ATTCAGCCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATA---GTCAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Pairagon GTTTCAGGTGGACTTCCAGTGT-GGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTCAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCA-TTCAGCCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATA---GTCAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Exonerate_protein2genome GTTTCAGGTGGACTTCCAGTGT-GGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTC--CGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTCAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCA---TTCAGCCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Exonerate_coding2genome GTTTCAGGTGGACTTCCAGTGT-GGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTC--CGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTCAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCA---TTCAGCCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from GeneWise GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTCAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCATTCAGCCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAA-GACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAACGACTACCACCGCCTGTTCTCTCCACACT-TGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAA-GACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAACGACTACCACCGCCTGTTCTCTCCACAC-TTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcatt Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAACGACTACCACCGCCTGTTCTCTCCACACTTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCA-AAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAACGACTACCACCGCCTGTTCTCTCCACACT-TGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCT-CAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAACGACTACCACCGCCTGTTCTCTCCACACT-TGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAACGACTACCACCGCCTGTTCTCTCCACACTTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAACGACTACCACCGCCTGTTCTCTCCACACTTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAACGACTACCACCGCCTGTTCTCTCCACACTTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGC-CTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagatATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCCTGACCAACCCTGGCTCTTATCACTGTGTCTGCC-GCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAggtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGC-CTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagatATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCCTGACCAACCCTGGCTCTTATCACTGTGTCT-GCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAggtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTG-CCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCCTGACCAACCCTGGCTCTTATCACTGTGTCTGCC-GCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTG-CCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCCTGACCAACCCTGGCTCTTATCACTGTGTCTG-CCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAACGAGCGCTCAGTGCAACAGAGCCATCCCACTACCACTACCT-ACCTTCTCGGCCTTTCCTAggtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from CESAR CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAACGAGCGCTCAGTGCAACAGAGCCATCCCACTACCACTACC-TACCTTCTCGGCCTTTCCTAggtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Spaln_aa2Genome GTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagccggtgagTGAACGAGCGCTCAGTGCAACAGAGCCATCCCACTACCACTACCTA-CCTTCTCGGCCTTTCCTAGgtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Spaln_nt2Genome CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAACGAGCGCTCAGTGCAACAGAGCCATCCCACTACCACTACCT-ACCTTCTCGGCCTTTCCTAGgtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Pairagon CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAACGAGCGCTCAGTGCAACAGAGCCATCCCACTACCACTACCT-ACCTTCTCGGCCTTTCCTAGgtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAGAGCTCATCTCTCGCCCCTCCCCAC ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGT---GAACGAGCGCTCAGTGCAACAGAGCCATCCCACTACCACTACCTACCT---TCTCGGCCTTTCCTAGGTATTGAGGTGGGGGGGGgtgagctaatcaggcaggggggggtgagctaa Alignment from Exonerate_coding2genome ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagccggtgagtgaacgagcgctcagtgcaacagagccatcccactaccactacctaccttctcggcctttcctaggtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from GeneWise ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagccggtgagtgaacgagcgctcagtgcaacagagccatcccactaccactacctaccttctcggcctttcctaggtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGT-GGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg aatataacttacccagtccacccacatctttccttctgttttatctgtagatGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTCGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCC-TGTGGGTGCAGGGGGCCGCTCATGTGTGggtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGT-GGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg aatataacttacccagtccacccacatctttccttctgttttatctgtagatGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTCGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTC-CTGTGGGTGCAGGGGGCCGCTCATGTGTGggtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGT-GGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTcGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCT-GTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTG-GCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTCGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCC-TGTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGT-GGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTCGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCC-TGTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGT-GGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTC--CACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTCGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCT---GTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGT-GGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTC--CACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTCGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCT---GTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGT-GGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTCGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCT-GTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAG-CCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagacCTGAATGAGTGCACGAAGCCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCC-TGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from CESAR acCTGAACGAGTGCACCAAG-CCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagacCTGAATGAGTGCACGAAGCCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACT-TCCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAG-CCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGcCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTT-CCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCC-TCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTT-CCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Pairagon ACCTGAACGAGTGCACCAAG-CCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTT-CCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAG-CCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAAC--TTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTT---CCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCTGAACGAGTGCACC-AAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTT-CCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg acaccagatttgagtattacaccacccttttcttttgaattgttttctagacATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGCTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGG-TGGGACATGTCGTggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg acaccagatttgagtattacaccacccttttcttttgaattgttttctagacATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGCTGCATTGCCTGCCAGCCTGGCTACCGAAGCC-AGGGGGTGGGACATGTCGTggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGcTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGgtgggacatgtcgtggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGCTGCATTGCCTGCCAGCCTGGCTACCGAAGCCA-GGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGCTGCATTGCCTGCCAGCCTGGCTACCGAAGCCA-GGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGCTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGgtgggacatgtcgtggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Exonerate_coding2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAG-TGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGCTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGgtgggacatgtcgtggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTC-AAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCC acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGCTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGTGGGACATgtcgtggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcaggactattataactgtctctatgaatttagtttcctcttcttttaagagGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAG-TGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from CESAR agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcaggactattataactgtctctatgaatttagtttcctcttcttttaagagGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAG-TGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAG-TGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Pairagon AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAG-TGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAG-GACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAACGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCA-TTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTggtaagaaatcattgatggatgagtttgtgtgtttccatctctagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAG-GACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAACGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTC-ATTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTggtaagaaatcattgatggatgattaactttctcctgtcttgtagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAG-GACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAcGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCAT-TTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgagtttgtgtgtttccatctctagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAG-GACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAACGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCA-TTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgagtttgtgtgtttccatctctagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAG-GACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAACGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCA-TTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgagtttgtgtgtttccatctctagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAG-GACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTC--ACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAACGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCAT---TTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgagtttgtgtgtttccatctctagGGTCCC Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAACGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCATTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgagtttgtgtgtttccatctctagGGTCCC #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGT-GTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTCGTCATTGGGCACTGTGTGCCACGCCCAGGTG-GGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAggtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGT-GTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTCGTCATTGGGCACTGTGTGCCACGCCCAGGTG-GGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAggtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTCGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGT-GTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTCGTCATTGGGCACTGTGTGCCACGCCCAGG-TGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGT-GTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTCGTCATTGGGCACTGTGTGCCACGCCCAGGT-GGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Exonerate_protein2genome GCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagattgtgtttctctctgtaaTTTAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTCGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --------------TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagATTGTGTTTCTCTCTGTAATTTAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTCGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAG-GCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttaggcTACCCTAATGAGGAGCGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGC-GGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from CESAR gcTACCCCAATGAGGAG-GCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttaggcTACCCTAATGAGGAGCGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGG-CGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGCGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAG-GCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGCGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGC-GGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Pairagon GCTACCCCAATGAGGAG-GCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGCGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGC-GGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGCGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Exonerate_coding2genome TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagCTTCTTTTTTCTTTCTATTTAGGCTACCCTAATGAGGAGCGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from GeneWise TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagCTTCTTTTTTCTTTCTATTTAGGCTACCCTAATGAGGAGCGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATG-GGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaagcacccattcctcctatgctcctggacatcttccctttcactctcg Alignment from CESAR GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGAT-GGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaagcacccattcctcctatgctcctggacatcttaattgtgtctgtct Alignment from Spaln_aa2Genome GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCcATCATCTGTGTGTTCTTGGAGAAGGATGG-GGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGgtaagcacccattcctcctatgctcctggacatcttccctttcactctcg Alignment from Spaln_nt2Genome GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATG-GGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaagcacccattcctcctatgctcctggacatcttccctttcactctcg Alignment from Pairagon GTGGATCGGCT-CATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATG-GGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaagcacccattcctcctatgctcctggacatcttccctttcactctcg Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATGGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaagcacccattcctcctatgctcctggacatcttccctttcactctcg Alignment from Exonerate_coding2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATGGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaagcacccattcctcctatgctcctggacatcttccctttcactctcg Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCCATCATCTGTGTGTTCTTGGAGAAGGATGGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaagcacccattcctcctatgctcctggacatcttccctttcactctcg #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagtTTTGGAGTGTTGCCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAG-CATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from CESAR cTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagtTTTGGAGTGTTGCCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACC-GAGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Spaln_aa2Genome CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGcCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGC-ATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Spaln_nt2Genome CTTTGGAGTGCTGC-TGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCG-AGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Pairagon CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCG-AGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Exonerate_protein2genome CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGT--GGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGC---ATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Exonerate_coding2genome CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGT--GGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGC---ATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTG-CGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ccccccaacctggtgagaatgtccagagaaaactgtctgtctgttcatagacTGCTGGGCACAGGATCCCCACCGCAGGCCCCACTTTGCCTCCATACTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGATGCCACGAGACTCCTTCCATT-CATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgtatgatatgggacacaaggaggagtagaggatagggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTG-CGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ccccccaacctggtgagaatgtccagagaaaactgtctgtctgttcatagacTGCTGGGCACAGGATCCCCACCGCAGGCCCCACTTTGCCTCCATACTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGATGCCACGAGACTCCTTCCATT-CATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgtatgatatgggacacaaggaggagtagaggatagggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ccccccaacctggtgagaatgtccagagaaaactgtctgtctgttcatagACTGCTGGGCACAGGATCCCCACCGCAGGCCCCACTTTGCCTCCATACTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGATGCCACGAGACTCCTTCCATTCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgtatgatatgggacacaaggaggagtagaggatagggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTG-CGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ccccccaacctggtgagaatgtccagagaaaactgtctgtctgttcatagACTGCTGGGCACAGGATCCCCACCGCAGGCCCCACTTTGCCTCCATACTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGATGCCACGAGACTCCTTCCATT-CATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgtatgatatgggacacaaggaggagtagaggatagggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTG-CGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ccccccaacctggtgagaatgtccagagaaaactgtctgtctgttcatagACTGCTGGGCACAGGATCCCCACCGCAGGCCCCACTTTGCCTCCATACTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGATGCCACGAGACTCCTTCCATT-CATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgtatgatatgggacacaaggaggagtagaggatagggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ccccccaacctggtgagaatgtccagagaaaactgtctgtctgttcatagACTGCTGGGCACAGGATCCCCACCGCAGGCCCCACTTTGCCTCCATACTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGATGCCACGAGACTCCTTCCATTCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgtatgatatgggacacaaggaggagtagaggatagggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ccccccaacctggtgagaatgtccagagaaaactgtctgtctgttcatagACTGCTGGGCACAGGATCCCCACCGCAGGCCCCACTTTGCCTCCATACTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGATGCCACGAGACTCCTTCCATTCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgtatgatatgggacacaaggaggagtagaggatagggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ccccccaacctggtgagaatgtccagagaaaactgtctgtctgttcatagACTGCTGGGCACAGGATCCCCACCGCAGGCCCCACTTTGCCTCCATACTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGATGCCACGAGACTCCTTCCATTCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgtatgatatgggacacaaggaggagtagaggatagggtgggggtct #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGT-TCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGggtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from CESAR GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGG-TTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGggtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGC------TGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGT-TCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Pairagon GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCG------CGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGT-TCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagtgGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGG-GGCCCAAAATGGGaggtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagtgGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGG-GGGCCCAAAATGGGaggtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAG---AACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTcGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGGGCCCAAAATGGGAGGTAAgcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGG-GGCCCAAAATGGGAGgtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGG-GGCCCAAAATGGGAGgtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAAC atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGGGCCCAAAATGggaggtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAAC atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGGGCCCAAAATGggaggtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAAC------------------------------------------------------ atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGGGCCCAAAATGGGAGGTAAGCACTTCAGAACACTTATATCCTGGTGTTCTGCTTTTTGGGGGCCT #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg cccccaccctctggtgtccattgtgccacatctgtattattttattttaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGGGTCACTAC-GGAGGTTTACCATggtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from CESAR gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg cccccaccctctggtgtccattgtgccacatctgtattattttattttaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGGGTCACTA-CGGAGGTTTACCATggtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Spaln_aa2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGA cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGcTGGATCTGTATGGAGTTCTGTGGGGGAGGGTCACTACGGAGgtttaccatggtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Spaln_nt2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGGGTCACTAC-GGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Pairagon GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGGGTCACTAC-GGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Exonerate_protein2genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCAC cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGGGTCACTACGGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Exonerate_coding2genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCAC cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGGGTCACTACGGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from GeneWise ----------------------------------------------------AATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAG-- CCCCCACCCTCTGGTGTCCATTGTGCCACATCTGTATTATTTTATTTTAGGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGGGTCACTACGGAGgtttaccatggtacttaccagactccatggacctgtccttccctgatcacgatatcgggg #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagcaGATTTTGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCA-TGGCACTCCATACtggtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from CESAR cgGACTTTGGGGTGTCAGGC-GAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagcaGATTTTGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCA-TGGCACTCCATACtggtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGG-CGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCA-TGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Pairagon CGGACTTTGGGGTGTCAGG-CGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCA-TGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTCGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCAC-CACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccaggACCCAGAATTTCCACCCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAA-GAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from CESAR gACCCAGAATTTCCAC-CACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccaggACCCAGAATTTCCACCCACTTCCGCAAGCTAGCCCTGACCAAAA-ACCCAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCAC-CACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACcCACTTCCGCAAGCTAGCCCTGACCAAAAA-CCCAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACC-ACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCCACTTCCGCAAGCTAGCCCTGACCAA-AAACCCAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Pairagon GACCCAGAATTTCCA-CCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCCACTTCCGCAAGCTAGCCCTGACCAAAAA-CCCAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTC-AATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCTTCTCCAAGGTCTTTCAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCA-TTGGGTTCACCCTGTGACTCGAggtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCTTCTCCAAGGTCTTTCAATGGCTGCCCCCTGCAGATTCATGCTGCTGTC-ATTGGGTTCACCCTGTGACTCGAggtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCTTCTCCAAGGTCtTTCAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCAT-TGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCTTCTCCAAGGTCTTTCAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCA-TTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCTTCTCCAAGGTCTTTCAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCA-TTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCTTCTCCAAGGTCTTTCAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCATTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAA---TGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCTTCTCCAAGGTCTTT--CAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCAT-TGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCTTCTCCAAGGTCTTTCAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCATTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg #### Map4k2_ID1643_22 --> 2 - 0 Original Alignment acCAGTTCCTGGTGGTAGGGGCT-GAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCA ggctatatacagagggcagcatgacatgtgttcatacctttgacttgtagacCAGTTCCTGGTAGTAGGGGCTCAAGGAGGGCTTCTATACCCTCAACCTGCACAAAC-GCATGAGGATAGAATGGAGAAGgtgagggttgttggccctccctccttgacttcttatatttcctcagCTCA Alignment from CESAR acCAGTTCCTGGTGGTAGGGGCT-GAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCA ggctatatacagagggcagcatgacatgtgttcatacctttgacttgtagacCAGTTCCTGGTAGTAGGGGCTCAAGGAGGGCTTCTATACCCTCAACCTGCACAAA-CGCATGAGGATAGAATGGAGAAGgtgagggttgttggccctccctccttttgtcttgttttcttcttagCTCA Alignment from Spaln_aa2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCA ggctatatacagagggcagcatgacatgtgttcatacctttgacttgtagACCAGTTCCTGGTAGTAGGGGCTCAAGGAGGGCTTCTATACCCTCAACCTGCACAAACGCATGAGGATAGAATGGAGAAGgtgagggttgttggccctccctccttgacttcttatatttcctcagCTCA Alignment from Spaln_nt2Genome ACCAGTTCCTGGTGGTAGGGGCTGA-GGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCA ggctatatacagagggcagcatgacatgtgttcatacctttgacttgtagACCAGTTCCTGGTAGTAGGGGCTCAAGGAGGGCTTCTATACCCTCAACCTGCACAAAC-GCATGAGGATAGAATGGAGAAGgtgagggttgttggccctccctccttgacttcttatatttcctcagCTCA Alignment from Pairagon ACCAGTTCCTGGTGGTAGGGGCT-GAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCA ggctatatacagagggcagcatgacatgtgttcatacctttgacttgtagACCAGTTCCTGGTAGTAGGGGCTCAAGGAGGGCTTCTATACCCTCAACCTGCACAAAC-GCATGAGGATAGAATGGAGAAGgtgagggttgttggccctccctccttgacttcttatatttcctcagCTCA Alignment from Exonerate_protein2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCA ggctatatacagagggcagcatgacatgtgttcatacctttgacttgtagACCAGTTCCTGGTAGTAGGGGCTCAAGGAGGGCTTCTATACCCTCAACCTGCACAAACGCATGAGGATAGAATGGAGAAGgtgagggttgttggccctccctccttgacttcttatatttcctcagCTCA Alignment from Exonerate_coding2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCA ggctatatacagagggcagcatgacatgtgttcatacctttgacttgtagACCAGTTCCTGGTAGTAGGGGCTCAAGGAGGGCTTCTATACCCTCAACCTGCACAAACGCATGAGGATAGAATGGAGAAGgtgagggttgttggccctccctccttgacttcttatatttcctcagCTCA Alignment from GeneWise ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG CTCA ggctatatacagagggcagcatgacatgtgttcatacctttgacttgtagACCAGTTCCTGGTAGTAGGGGCTCAAGGAGGGCTTCTATACCCTCAACCTGCACAAACGCATGAGGATAGAATGGAGAAGgtgagggttgttggccctccctccttgacttcttatatttcctcagCTCA #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACC-GGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagtgCGAAATCCCTATACCCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCC-CCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from CESAR ttCGAAACCCCTATACC-GGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagtgCGAAATCCCTATACCCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGC-CCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCG-GCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCC-CCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Pairagon TTCGAAACCCCTATA-CCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCC-CTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCC---AGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACC---CAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa #### Map4k2_ID1649_28 --> 2 - 1 Original Alignment agGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc ctagcatggacccacccagtgagaggccctttttccctgtggggccacagagGGGATTCCAGGCCCTCGCACAGCAAGTAATCCAGGTGGATCGGG-CAAAGTCCTGGTCAGCTTTGAAcgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from CESAR agGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc ctagcatggacccacccagtgagaggccctttttccctgtggggccacagagGGGATTCCAGGCCCTCGCACAGCAAGTAATCCAGGTGGATCGG-GCAAAGTCCTGGTCAGCTTTGAAcgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Spaln_aa2Genome AGGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTcGCACAGCAAGTAATCCAGGTGGATCGGGC-AAAGTCCTGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Spaln_nt2Genome AGGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTCGCACAGCAAGTAATCCAGGTGGATCGGG-CAAAGTCCTGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Pairagon AGGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTCGCACAGCAAGTAATCCAGGTGGATCGGG-CAAAGTCCTGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Exonerate_protein2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTCGCACAGCAAGTAATCCAGGTGGATCGGGCAAAGTCCTGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Exonerate_coding2genome ctagcatggacccacccagtgagaggccctttttccctgtggggccacagaggggattccaggccctcgcacagcaagtaatccaggtggatcgggcaaagtcctggtcagctttgaacgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from GeneWise AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTCGCACAGCAAGTAATCCAGGTGGATCGGGCAAAGTCCTGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCC-GCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACC-GAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCC-GCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCAC-CGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGC-CGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACC-GAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTG-CCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACC-GAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACC-AGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCCAGCACAAACCGAAGCAGGAACTCCCCGCTTT-GGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from CESAR AACAGCGTCCTTTCCACC-AGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCCAGCACAAACCGAAGCAGGAACTCCCCGC-TTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACC-AGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCcAGCACAAACCGAAGCAGGAACTCCCCGCT-TTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACC-AGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCCAGCACAAACCGAAGCAGGAACTCCCCGC-TTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Pairagon AACAGCGTCCTTTCCA-CCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCCAGCACAAACCGAAGCAGGAACTCCCCGC-TTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCCAGCACAAACCGAAGCAGGAACTCCCCGCTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCCAGCACAAACCGAAGCAGGAACTCCCCGCTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCCAGCACAAACCGAAGCAGGAACTCCCCGCTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGGGTA-CTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACCTGAGGGGGAAATACCGTATTCCGTTCTACATGT-CACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from CESAR GAGCTGCGGGAACGGGTA-CTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACCTGAGGGGGAAATACCGTATTCCGTTCTACATGT-CACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTA-CTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTAcCTGAGGGGGAAATACCGTATTCCGTTCTACATGTC-ACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTA-CTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACCTGAGGGGGAAATACCGTATTCCGTTCTACATGT-CACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Pairagon GAGCTGCGGGAACGGGTA-CTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACCTGAGGGGGAAATACCGTATTCCGTTCTACATGT-CACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtaggaGAGGTGTTTGATTATCTACGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCGAG-CAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from CESAR gaGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtaggaGAGGTGTTTGATTATCTACGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCGAG-CAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAcGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCGAGC-AAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTACGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCGAG-CAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Pairagon GAGAGGTGTTTGATTACCTA-GTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTACGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCGAG-CAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTACGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTACGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTACGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTT-TCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactgtatgggaaatgaagagattccctccccatttttgtctctcagCCTGACAGGACTTTTGAACTCAAGATTGGGCAACCTACTGTTCTCTTACTTGCTGAAGGCAGCTTCTGGCATTG-GAAGGGAGCCCGGCATACAggtgagtacaagtttgacagctgggtgtgtgaggaatcaagaaatggaatg Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTT-TCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactgtatgggaaatgaagagattccctccccatttttgtctctcagCCTGACAGGACTTTTGAACTCAAGATTGGGCAACCTACTGTTCTCTTACTTGCTGAAGGCAGCTTCTGGCATT-GGAAGGGAGCCCGGCATACAggtgagtacaagtttgacagctgggtgtgtgaggaatcaagaaatggaatg Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgaagagattccctccccatttttgtctctcagCCTGACAGGACTTTTGAACTCAAGATTGGGCAACCTACTGTTCTCTTACTTGCTGAAGGCAGCTTCTGGCATTGGAAGGGAGCCCGGCATACAGgtgagtacaagtttgacagctgggtgtgtgaggaatcaagaaatggaatg Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTT-TCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgaagagattccctccccatttttgtctctcagCCTGACAGGACTTTTGAACTCAAGATTGGGCAACCTACTGTTCTCTTACTTGCTGAAGGCAGCTTCTGGCATTG-GAAGGGAGCCCGGCATACAGgtgagtacaagtttgacagctgggtgtgtgaggaatcaagaaatggaatg Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTT-TCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgaagagattccctccccatttttgtctctcagCCTGACAGGACTTTTGAACTCAAGATTGGGCAACCTACTGTTCTCTTACTTGCTGAAGGCAGCTTCTGGCATTG-GAAGGGAGCCCGGCATACAGgtgagtacaagtttgacagctgggtgtgtgaggaatcaagaaatggaatg Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgaagagattccctccccatttttgtctctcagCCTGACAGGACTTTTGAACTCAAGATTGGGCAACCTACTGTTCTCTTACTTGCTGAAGGCAGCTTCTGGCATTGGAAGGGAGCCCGGCATACAGgtgagtacaagtttgacagctgggtgtgtgaggaatcaagaaatggaatg Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgaagagattccctccccatttttgtctctcagCCTGACAGGACTTTTGAACTCAAGATTGGGCAACCTACTGTTCTCTTACTTGCTGAAGGCAGCTTCTGGCATTGGAAGGGAGCCCGGCATACAGgtgagtacaagtttgacagctgggtgtgtgaggaatcaagaaatggaatg Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgaagagattccctccccatttttgtctctcagCCTGACAGGACTTTTGAACTCAAGATTGGGCAACCTACTGTTCTCTTACTTGCTGAAGGCAGCTTCTGGCATTGGAAGGGAGCCCGGCATACAGgtgagtacaagtttgacagctgggtgtgtgaggaatcaagaaatggaatg #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACC-GACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc aaactgatgcatgagctagtctctctactcttccccttcttgtttggcaggGAGTTGGTGGAGCGTGAGGTGACTCGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGA-CCCTCGGCCATGCACCATGCCACGAATGGTGGCAGAATACcgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACC-GACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc aaactgatgcatgagctagtctctctactcttccccttcttgtttggcaggGAGTTGGTGGAGCGTGAGGTGACTCGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATG-TGACCCTCGGCCATGCACCATGCCACGAATGGTGGCAGAATACcgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTCGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGACCCTCGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGAC-CGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTCGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTG-ACCCTCGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGAC-CGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTCGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTG-ACCCTCGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTCGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGACCCTCGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTCGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGACCCTCGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTCGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGACCCTCGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca #### Ms4a2_ID3240_5 --> 0 - 0 Original Alignment GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGT-AGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA catattttaactggcctgtggacacactgttccccctgctccttgtccagGTGAGAGGCAGCCTGGGAGCGAACATTGTCAGTCAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCC-CAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACGACTgtaagaacttccagggaaaatccaagctctctgtgacctgcggtacacta Alignment from CESAR GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGT-AGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA catattttaactggcctgtggacacactgttccccctgctccttgtccagGTGAGAGGCAGCCTGGGAGCGAACATTGTCAGTCAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATC-CCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACGACTgtaagaacttccagggaaaatccaagctctctgtgacctgcggtacacta Alignment from Spaln_aa2Genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA catattttaactggcctgtggacacactgttccccctgctccttgtccagGTGAGAGGCAGCCTGGGAGCGAACATTGTCAGTCAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACGACTgtaagaacttccagggaaaatccaagctctctgtgacctgcggtacacta Alignment from Spaln_nt2Genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGT-AGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA catattttaactggcctgtggacacactgttccccctgctccttgtccagGTGAGAGGCAGCCTGGGAGCGAACATTGTCAGTCAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCC-CAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACGACTgtaagaacttccagggaaaatccaagctctctgtgacctgcggtacacta Alignment from Pairagon GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGT-AGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA catattttaactggcctgtggacacactgttccccctgctccttgtccagGTGAGAGGCAGCCTGGGAGCGAACATTGTCAGTCAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCC-CAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACGACTgtaagaacttccagggaaaatccaagctctctgtgacctgcggtacacta Alignment from Exonerate_protein2genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA catattttaactggcctgtggacacactgttccccctgctccttgtccagGTGAGAGGCAGCCTGGGAGCGAACATTGTCAGTCAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACGACTgtaagaacttccagggaaaatccaagctctctgtgacctgcggtacacta Alignment from Exonerate_coding2genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA catattttaactggcctgtggacacactgttccccctgctccttgtccagGTGAGAGGCAGCCTGGGAGCGAACATTGTCAGTCAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACGACTgtaagaacttccagggaaaatccaagctctctgtgacctgcggtacacta Alignment from GeneWise GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGCTGCTTTGTGGCTTCTTTCACCACA catattttaactggcctgtggacacactgttccccctgctccttgtccagGTGAGAGGCAGCCTGGGAGCGAACATTGTCAGTCAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTTGTTTTGTGGCTTCTTTCACGACTgtaagaacttccagggaaaatccaagctctctgtgacctgcggtacacta #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAA-CTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagtGCACCTGACATTGAACCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGC-GACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from CESAR tGCACCTGACATTGAA-CTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagtGCACCTGACATTGAACCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAG-CGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Spaln_nt2Genome TGCACCTGACATTGAA-CTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGC-GACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Pairagon TGCACCTGACATTGAA-CTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGC-GACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACA-CTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACCTTCTAGCAGATCAAGGGGAAATCAGGGTTG-TTGCACATTCCAAGCTGAGATCCCAGATCATTTGGCAGAGggtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACA-CTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACCTTCTAGCAGATCAAGGGGAAATCAGGGTT-GTTGCACATTCCAAGCTGAGATCCCAGATCATTTGGCAGAGggtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACCTTCTAGCAGATCAAGGGGAAATCAGGGTTGTTGCACATTCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACA-CTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACCTTCTAGCAGATCAAGGGGAAATCAGGGTT-GTTGCACATTCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACA-CTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACCTTCTAGCAGATCAAGGGGAAATCAGGGTT-GTTGCACATTCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACCTTCTAGCAGATCAAGGGGAAATCAGGGTTGTTGCACATTCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Exonerate_coding2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACCTTCTAGCAGATCAAGGGGAAATCAGGGTTGTTGCACATTCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACCTTCTAGCAGATCAAGGGGAAATCAGGGTTGTTGCACATTCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg gtttctgacttatttccctttctcccacaccccactctgttgtattgcaggaGAATCAGATAATCGAAATCAACAGCAAAATGGAGATGAAAGTCTGGGACCCAGGCAACC-CCTCACAGACCGACAGATTGACCAATTTCTTGTGGTGGCTcggtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from CESAR gaGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg gtttctgacttatttccctttctcccacaccccactctgttgtattgcaggaGAATCAGATAATCGAAATCAACAGCAAAATGGAGATGAAAGTCTGGGACCCAGGCAACC-CCTCACAGACCGACAGATTGACCAATTTCTTGTGGTGGCTcggtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGCAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCTCACAGACCGACAGATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGCAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCC-CTCACAGACCGACAGATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGCAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCC-CTCACAGACCGACAGATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGCAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCTCACAGACCGACAGATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGCAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCTCACAGACCGACAGATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGCAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCTCACAGACCGACAGATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCG-AGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtGCTGTGGGAACTTTTGTTCAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGC-GTCAAGCTTGCACATGAGTGCA------GCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from CESAR aGCTGTGGGAACCTTCGCG-AGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtGCTGTGGGAACTTTTGTTCAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGG-CGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTCAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCG-AGAGCCCTAGACTGCAGCAGCTC------AATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTCAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGC-GTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Pairagon AGCTGTGGGAACCTTCG-CGAGAGCCCTAGACTGCAGCAG------CTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTCAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGC-GTCAAGCTTGCACATGAGTGCAGCTA------CCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTCAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAA gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtgctgtgggaacttttgttcagagctctagactgcaccagctccatctcaattcggcgtcaagcttgcacatgagtgcagctaccagagatattactctggtatgtGCCAACTCACAGATATTTTAGTACGCTAAGCTAAGAGTGGAGCG Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCC------CTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTCAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCA-AGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from CESAR CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACC-AAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAcAGCATAGTCCAGTTTTATTACATGTGGAAAACCAA-GACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCA-AGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Pairagon CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCA-AGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACC--ACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCAA---GACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACC--ACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCAA---GACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCAAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa gcttatttcccttactgccatctttctcccagctaggtctgcctctccagtACTAAGCCAAATCCCAACCAGATCATCTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGACTGA-TTGTGAGAGCTGTCACagtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa gcttatttcccttactgccatctttctcccagctaggtctgcctctccagtACTAAGCCAAATCCCAACCAGATCATCTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGACTG-ATTGTGAGAGCTGTCACagtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTGTGGGTTCAAAGCCTcGGCATGAATGGGGCTGGATTCCAGAAGGGACTGAT-TGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGACTGA-TTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGACTGA-TTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGACTGATTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGACTGATTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTGTGGGTTCAAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAGGGACTGATTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAAC-ATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACCATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAA-ATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAAC-ATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACCATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGA-AAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACCATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACC-CCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACCATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAA-AAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAA-CATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACCATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAA-AAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAAC-ATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGG--AAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACCATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAA---AAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAAC-ATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGG--AAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACCATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAA---AAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAAC-ATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACCATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAA-TATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gccaagcacccaggagatccttctctcatttctcccctttaaacccacaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAA-TATCATCAAAGATCTGggtaagtaggatgacttttcaagctaggtcagatcttctatctcgcgctca Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gccaagcacccaggagatccttctctcatttctcccctttaaacccacaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGG-CAATATCATCAAAGATCTGggtaagtaggatgacttttcaagctaggtcagatcttctatctcgtcattc Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGAT---CTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCAcCTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAATATCATCAAAGATCTGGGTAAgtaggatgacttttcaagctaggtcagatcttctatctcgcgctca Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAA-TATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcgcgctca Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAA-TATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcgcgctca Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAATATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcgcgctca Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAATATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcgcgctca Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAATATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcgcgctca #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagtgGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGA-ACGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagtgGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGG-TGAACGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGcACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAA-CGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTG-AACGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTG-ACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTG-AACGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAACGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAACGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGCACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAACGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGG-ATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGCATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAAC-AAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCaggtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGG-ATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGCATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAA-CAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCaggtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCA-GGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAgGGCATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACA-AACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Spaln_nt2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCA-GGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGCATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAG-AAACAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGG-ATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGCATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAAC-AAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGCATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Exonerate_coding2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGCATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGCATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATC-ACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCACAAACAGACATTCACACCCAAGCCTCTCTGGCATCCTGTTATGA-TGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATC-ACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCACAAACAGACATTCACACCCAAGCCTCTCTGGCATCCTGTTA-TGATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCACAAACAGACATTCACACCCAAGCCTCTCTGGCATCCTGTTATGATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACA-TCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCACAAACAGACATTCACACCCAAGCCTCTCTGGCATCCTGTTATG-ATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACA-TCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCACAAACAGACATTCACACCCAAGCCTCTCTGGCATCCTGTTATG-ATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCACAAACAGACATTCACACCCAAGCCTCTCTGGCATCCTGTTATGATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCACAAACAGACATTCACACCCAAGCCTCTCTGGCATCCTGTTATGATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCACAAACAGACATTCACACCCAAGCCTCTCTGGCATCCTGTTATGATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagaCTTGGCAACTTCCACATACCATATCCCAGTAAGCAGCAGCACACCACTGC-CCTCAGCCTGACCCTGCAGATGaagtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from CESAR gCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagaCTTGGCAACTTCCACATACCATATCCCAGTAAGCAGCAGCACACCACTG-CCCTCAGCCTGACCCTGCAGATGaagtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Spaln_aa2Genome ---CTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCCACATACCATATCCCAGTAAGCAGCAGCACACCACTGCC-CTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Spaln_nt2Genome GCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCCACATACCATATCCCAGTAAGCAGCAGCACACCACTGCC-CTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Pairagon GCTTGGCAACTT-CACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCCACATACCATATCCCAGTAAGCAGCAGCACACCACTGC-CCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Exonerate_protein2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCCACATACCATATCCCAGTAAGCAGCAGCACACCACTGCCCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Exonerate_coding2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCCACATACCATATCCCAGTAAGCAGCAGCACACCACTGCCCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from GeneWise --CTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCCACATACCATATCCCAGTAAGCAGCAGCACACCACTGCC-CTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa #### Myrf_ID2718_19 --> 1 - 1 Original Alignment cAGGTCCAGCCAGAGCTTCGGG-ACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccggctccaaagcctccctgtacctctactctttttttctttttttgcagtAGGTCCAGTCAGAGCTTTGGGCACCACACAGCTCCAACAGTCCTCCATGACCACTGGAC-ACCAGGAACACAGCCCTCTTTACTGCTGggtaagaggtgggatctcctgaggctgatggatgtgtgtgctgggcctgat Alignment from CESAR cAGGTCCAGCCAGAGCTTCGGG-ACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccggctccaaagcctccctgtacctctactctttttttctttttttgcagtAGGTCCAGTCAGAGCTTTGGGCACCACACAGCTCCAACAGTCCTCCATGACCACTGGA-CACCAGGAACACAGCCCTCTTTACTGCTGggtaagaggtgggatctcctgaggctgatggatgtgtgtgctgggccttgg Alignment from Spaln_aa2Genome CAGGTCCAGCCAGAGCTTC-GGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcctccctgtacctctactctttttttctttttttgcagTAGGTCCAGTCAGAGCTTTgGGCACCACACAGCTCCAACAGTCCTCCATGACCACTGGACA-CCAGGAACACAGCCCTCTTTACTGCTGGgtaagaggtgggatctcctgaggctgatggatgtgtgtgctgggcctgat Alignment from Spaln_nt2Genome CAGGTCCAGCCAGAGCTTCGGG-ACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcctccctgtacctctactctttttttctttttttgcagTAGGTCCAGTCAGAGCTTTGGGCACCACACAGCTCCAACAGTCCTCCATGACCACTGGAC-ACCAGGAACACAGCCCTCTTTACTGCTGGgtaagaggtgggatctcctgaggctgatggatgtgtgtgctgggcctgat Alignment from Pairagon CAGGTCCAGCCAGAGCTTCGGG-ACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcctccctgtacctctactctttttttctttttttgcagTAGGTCCAGTCAGAGCTTTGGGCACCACACAGCTCCAACAGTCCTCCATGACCACTGGAC-ACCAGGAACACAGCCCTCTTTACTGCTGGgtaagaggtgggatctcctgaggctgatggatgtgtgtgctgggcctgat Alignment from Exonerate_protein2genome CAGGTCCAGCCAGAGCTTC-GGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGA--CTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcctccctgtacctctactctttttttctttttttgcagTAGGTCCAGTCAGAGCTTTGGGCACCACACAGCTCCAACAGTCCTCCATGACCACTGGACA---CCAGGAACACAGCCCTCTTTACTGCTGGgtaagaggtgggatctcctgaggctgatggatgtgtgtgctgggcctgat Alignment from Exonerate_coding2genome CAGGTCCAGCCAGAGCTTCGGGAC---CACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcctccctgtacctctactctttttttctttttttgcagTAGGTCCAGTCAGAGCTTTGGG--CACCACACAGCTCCAACAGTCCTCCATGACCACTGGACA-CCAGGAACACAGCCCTCTTTACTGCTGGgtaagaggtgggatctcctgaggctgatggatgtgtgtgctgggcctgat Alignment from GeneWise CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcctccctgtacctctactctttttttctttttttgcagTAGGTCCAGTCAGAGCTTTGGGCACCACACAGCTCCAACAGTCCTCCATGACCACTGGACACCAGGAACACAGCCCTCTTTACTGCTGGgtaagaggtgggatctcctgaggctgatggatgtgtgtgctgggcctgat #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAG-GCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAACGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAG-TCTCGTGGTAGTCATGGCCTTCaggtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAG-GCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAACGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATA-GTCTCGTGGTAGTCATGGCCTTCaggtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAG-GCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAcGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGT-CTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAG-GCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAACGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAG-TCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAG-GCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAACGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAG-TCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAACGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAACGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAACGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGG-ATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGCATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGC-TGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGG-ATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGCATCTCACGGATGCGGTTAGTGCACTACAGGTACA-AGCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGCATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGG-ATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGCATCTCACGGATGCGGTTAGTGCACTACAGGTACAAG-CTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGG-ATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGCATCTCACGGATGCGGTTAGTGCACTACAGGTACAAG-CTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGG-ATCTCTCGGATGCGGCTGGTGCACTACAGATACAAG--CCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGCATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCT---GAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGG-ATCTCTCGGATGCGGCTGGTGCACTACAGATACAAG--CCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGCATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCT---GAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGCATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGC-AACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTG-TCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGC-AACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCT-GTCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGTCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGG-CAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTG-TCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGG-CAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTG-TCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGTCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGTCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGTCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTG-GCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacaggTATTTCATGCTGGTGGTTCGCCCTCCAGGCACATGCACAGAACCAAAACT-CACCCTGGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from CESAR gTATTTCATGCTGGTGGTG-GCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacaggTATTTCATGCTGGTGGTTCGCCCTCCAGGCACATGCACAGAACCAAAAC-TCACCCTGGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTCGCCCTCCAGGCACATGCACAGAACCAAAACTCACCCTGGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTG-GCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTCGCCCTCCAGGCACATGCACAGAACCAAAACT-CACCCTGGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Pairagon GTATTTCATGCTGGTGG-TGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTCGCCCTCCAGGCACATGCACAGAACCAAAACT-CACCCTGGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTCGCCCTCCAGGCACATGCACAGAACCAAAACTCACCCTGGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTCGCCCTCCAGGCACATGCACAGAACCAAAACTCACCCTGGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from GeneWise GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTCGCCCTCCAGGCACATGCACAGAACCAAAACTCACCCTGGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCC-CCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagaGTCAATCTCCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGG---C-CCATTTCACTGAGACCACTGCCAACAACATGCGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from CESAR gGTCAATCTT-CCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagaGTCAATCTCCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGG----CCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCC---CGAGCAGGTTACACAAGTGACTGTGGGGCCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCT-GAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGGC----CCATTTCACTGAGACCACTGCCAACAACATGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Pairagon ---------------------------------------------------GTCAATCT-TCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG TGTTGGCTGCTTCCTAGGAAACACTGCTCTCTGATGGTGTCTTTTCCTAGAGTCAATCTCCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGGC----CCATTTCACTGAGACCACTGCCAACAACATGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCCGAGCAGGTTACACAAGTGACTGTGGG---GCCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCCGAGCAGGTTACACAAGTGACTGTGGG---GCCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCCGAGCAGGTTACACAAGTGACTGTGGG---GCCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAG-CTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag taggctcctctattgggtcaaagcactcctgactttttatttttaaaaagcTATGAAGTACAGCCTGGAAAGCAAGGTAAGGCAGAAAGGCCTAGGGAAGT-TCTCATTCAGATCCTCCAGCTCATGGCCAACaggtaagaagcatttgtgggaatgggcttgctgggagaggtgggtcctaggc Alignment from CESAR cTATGAAGTGCAG-CTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag taggctcctctattgggtcaaagcactcctgactttttatttttaaaaagcTATGAAGTACAGCCTGGAAAGCAAGGTAAGGCAGAAAGGCCTAGGGAAGT-TCTCATTCAGATCCTCCAGCTCATGGCCAACaggtaagaagcatttgtgggaatgggcttgctgggagaggtgggtcctaggc Alignment from Spaln_aa2Genome GCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taggctcctctattgggtcaaagcactcctgactttttatttttaaaaagctatgaagtacagCCTGGAAAGCAAGGTAAGGCAGAAAGGCCTAGGGAAGTT-CTCATTCAGATCCTCCAGCTCATGGCCAACAGgtaagaagcatttgtgggaatgggcttgctgggagaggtgggtcctaggc Alignment from Spaln_nt2Genome CTATGAAGTGCAGC-TGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taggctcctctattgggtcaaagcactcctgactttttatttttaaaaagCTATGAAGTACAGCCTGGAAAGCAAGGTAAGGCAGAAAGGCCTAGGGAAGTT-CTCATTCAGATCCTCCAGCTCATGGCCAACAGgtaagaagcatttgtgggaatgggcttgctgggagaggtgggtcctaggc Alignment from Pairagon CTATGAAGTGCAG-CTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taggctcctctattgggtcaaagcactcctgactttttatttttaaaaagCTATGAAGTACAGCCTGGAAAGCAAGGTAAGGCAGAAAGGCCTAGGGAAGTT-CTCATTCAGATCCTCCAGCTCATGGCCAACAGgtaagaagcatttgtgggaatgggcttgctgggagaggtgggtcctaggc Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taggctcctctattgggtcaaagcactcctgactttttatttttaaaaagCTATGAAGTACAGCCTGGAAAGCAAGGTAAGGCAGAAAGGCCTAGGGAAGTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtaagaagcatttgtgggaatgggcttgctgggagaggtgggtcctaggc Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taggctcctctattgggtcaaagcactcctgactttttatttttaaaaagCTATGAAGTACAGCCTGGAAAGCAAGGTAAGGCAGAAAGGCCTAGGGAAGTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtaagaagcatttgtgggaatgggcttgctgggagaggtgggtcctaggc Alignment from GeneWise ---GAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taggctcctctattgggtcaaagcactcctgactttttatttttaaaaagctatgaagTACAGC------CTGGAAAGCAAGGTAAGGCAGAAAGGCCTAGGGAAGTTCTC-ATTCAGATCCTCCAGCTCATGGCCAACAGgtaagaagcatttgtgggaatgggcttgctgggagaggtgggtcctaggc #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGAT-GACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg atctggtactagagggcagtctactgatattccgtgaacatattttacaggTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATCGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTT-CATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATtggtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGAT-GACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg atctggtactagagggcagtctactgatattccgtgaacatattttacaggTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATCGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTT-CATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATtggtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATCGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGAT-GACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATCGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTT-CATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGAT-GACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATCGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTT-CATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGAT-GACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGT--TCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATCGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTC---ATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGAT-GACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGT--TCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATCGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTC---ATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGAT-GACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATCGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTC-ATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTAT-GAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagaGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATCGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGC-GGCTAACAGTGTGGAGGTTggtaggttcaagtctaggaatgtcagggggggatggattatctcttccctt Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTAT-GAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagaGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATCGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAG-CGGCTAACAGTGTGGAGGTTggtaggttcaagtctaggaatgtcagggggggatggttcttttttttttta Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTAT-GAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAA---GTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATcGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCGGCTAACAGTGTGGAGGTTGGTAGgttcaagtctaggaatgtcagggggggatggattatctcttccctt Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTAT-GAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATCGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGC-GGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggattatctcttccctt Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTAT-GAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATCGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGC-GGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggattatctcttccctt Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATCGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggattatctcttccctt Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATCGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggattatctcttccctt Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATCGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCGGCTAACAGTGTGGAGGTTGGTAGGTTCAAGTCTAGGAATGTCAGGGGGGGATGGATTATCTCTTCCCTT #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGC-AAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATCA-TGTCGACATCTCTGTTTTTtgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from CESAR GAGTTTCTCAGC-AAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATC-ATGTCGACATCTCTGTTTTTtgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATCATGTCGACATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Spaln_nt2Genome GAGTTTCTCAGC-AAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATC-ATGTCGACATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Pairagon GAGTTTCTCAG-CAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATC-ATGTCGACATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCCAAACTGCAAGAGCGCACAGTGGACTATATCATGTCGACATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Exonerate_coding2genome aaaatccaaagcattcttatacaccaattcctttccctttttaattataggaatctctcagccaaactgcaagagcgcacagtggactatatcatgtcgacatctctgttttttgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from GeneWise aaaatccaaagcattcttatacaccaattcctttccctttttaattataggaatctctcagccaaactgcaagagcgcacagtggactatatcatgtcgacatctctgttttttgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagccAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGC-CTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from CESAR ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagccAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTG-CCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTG-CCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Pairagon CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTG-CCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Exonerate_coding2genome gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagccaatactactctccagcgcccagggagcaccacctgtacaaggtgtgccttctcttcaaccaaagatgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCT-GTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg ggC ggcataagggtgggacttggatgtggcttttctggcctttcactctctaggtTTTAGCAGCCAACAAGCTCGTCGCCCGGACTGCTGGGAGTGTGCTTCTCC-GCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtaagtcacggagtccccaggcaggcaccttgcccctccctctgtagggC Alignment from CESAR gtTTCAGCAGCCACCAAGCT-GTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg ggC ggcataagggtgggacttggatgtggcttttctggcctttcactctctaggtTTTAGCAGCCAACAAGCTCGTCGCCCGGACTGCTGGGAGTGTGCTTCTCC-GCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtaagtcacggagtccccaggcaggcagctctcatgtcaccctccagggC Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCT-GTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTcGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCG-CTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggcaccttgcccctccctctgtagGGC Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCT-GTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTCGTCGCCCGGACTGCTGGGAGTGTGCTTCTCC-GCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggcaccttgcccctccctctgtagGGC Alignment from Pairagon GTTTCAGCAGCCACCAAGCT-GTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTCGTCGCCCGGACTGCTGGGAGTGTGCTTCTCC-GCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggcaccttgcccctccctctgtagGGC Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTCGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggcaccttgcccctccctctgtagGGC Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTCGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggcaccttgcccctccctctgtagGGC Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTCGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggcaccttgcccctccctctgtagGGC #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment TGg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCT-GCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga TGggtatagcacggagtccccaggcaggcagctctcatgtcaccctccagggCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTCGCGGCTGCCTCATTGGGAGAGCACATCCTGACCCTAG-GAAGAGCAGCCCTgagtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from CESAR TGg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCT-GCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga TGggtaagtcacggagtccccaggcaggcagctctcatgtcaccctccagggCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTCGCGGCTGCCTCATTGGGAGAGCACATCCTGACCCTA-GGAAGAGCAGCCCTgagtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Spaln_aa2Genome TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCT-GCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGAT-------- TGGgtatagcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTcGCGGCTGCCTCATTGGGAGAGCACATCCTGACCCTAGGAAGAGCAGCCCTGAGTAGCCGCCAgcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Spaln_nt2Genome TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCT-GCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtatagcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTCGCGGCTGCCTCATTGGGAGAGCACATCCTGACCCT-AGGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Pairagon TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCT-GCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtatagcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTCGCGGCTGCCTCATTGGGAGAGCACATCCTGACCCTA-GGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Exonerate_protein2genome TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCT-GCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtatagcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTCGCGGCTGCCTCATTGGGAGAGCACATCCTGACCCTAGGAAGAGCAGCCCTGAGtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Exonerate_coding2genome TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCT-GCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtatagcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTCGCGGCTGCCTCATTGGGAGAGCACATCCTGACCCTAGGAAGAGCAGCCCTGAGtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from GeneWise TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtatagcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTCGCGGCTGCCTCATTGGGAGAGCACATCCTGACCCTAGGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAG-CTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagtCCTCTGCAGGTCCAAATGGTTAATGACCAACCTGATGCTCTTAGAGTGTGCATTTTTGAACCCAA-AGCTTTCCCAGAAGAGAGGCACTACaggtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAG-CTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagtCCTCTGCAGGTCCAAATGGTTAATGACCAACCTGATGCTCTTAGAGTGTGCATTTTTGAACCCAA-AGCTTTCCCAGAAGAGAGGCACTACaggtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACCTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGC-TGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACCTGATGCTCTTAGAGTGTGCATTTTTGAACCCAA-AGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAG-CTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACCTGATGCTCTTAGAGTGTGCATTTTTGAACCCAA-AGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACCTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACCTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACCTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCA-CTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaaggtGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCT---ACATTGATTCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCCTAGTGCAGGCTCAGACAGGCCTAGGAACAG-TACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCA-CTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaaggtGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCCTAGTGCAGGCTCAGACAGGCCTAGGAACA-GTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCA-CTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTcCTAGTGCAGGCTCAGACAGGCCTAGGAACAGT-ACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCAC-TGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCAT---CTACATTGATTCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCCTAGTGCAGGCTCAGACAGGCCTAGGAACAG-TACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGC-ACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTA---CATTGATTCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCCTAGTGCAGGCTCAGACAGGCCTAGGAACAG-TACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCCTAGTGCAGGCTCAGACAGGCCTAGGAACAGTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCCTAGTGCAGGCTCAGACAGGCCTAGGAACAGTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCCTAGTGCAGGCTCAGACAGGCCTAGGAACAGTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGCGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCA-ACCACAGGGCCTTGCTggtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGCGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCC-AACCACAGGGCCTTGCTggtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACA gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGcGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGCGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAA-CCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGCGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAA-CCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACA gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGCGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACA gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGCGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGCGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTT-CCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTG-CTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGC-TTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGC-TTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAACCTG-AAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cacctgtaagtcaatcaacatgttctttgctgaaaactctcccgtcccagaaTCTCCAGGGGCCTTGAACCTGCAAGATCTCCCAGATGGACAAGACAGCAGGTTCAGTGC-TGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAggtaggacaccctggggcaggctgtagtggtagtaatctggaaatcacttg Alignment from CESAR agTCTCCAGGGGCCTCGAACCTG-AAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cacctgtaagtcaatcaacatgttctttgctgaaaactctcccgtcccagaaTCTCCAGGGGCCTTGAACCTGCAAGATCTCCCAGATGGACAAGACAGCAGGTTCAGTG-CTGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAggtaggacaccctggggcaggctgtagtggtagtaatctggaaatcacttg Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTG-AAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaagtcaatcaacatgttctttgctgaaaactctcccgtcccagAATCTCCAGGGGCCTTGAACCTGcAAGATCTCCCAGATGGACAAGACAGCAGGTTCAGTGCT-GGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaggacaccctggggcaggctgtagtggtagtaatctggaaatcacttg Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGA-AGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaagtcaatcaacatgttctttgctgaaaactctcccgtcccagAATCTCCAGGGGCCTTGAACCTGCAAGATCTCCCAGATGGACAAGACAGCAGGTTCAGTGC-TGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaggacaccctggggcaggctgtagtggtagtaatctggaaatcacttg Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTG-AAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaagtcaatcaacatgttctttgctgaaaactctcccgtcccagAATCTCCAGGGGCCTTGAACCTGCAAGATCTCCCAGATGGACAAGACAGCAGGTTCAGTGC-TGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaggacaccctggggcaggctgtagtggtagtaatctggaaatcacttg Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaagtcaatcaacatgttctttgctgaaaactctcccgtcccagAATCTCCAGGGGCCTTGAACCTGCAAGATCTCCCAGATGGACAAGACAGCAGGTTCAGTGCTGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaggacaccctggggcaggctgtagtggtagtaatctggaaatcacttg Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaagtcaatcaacatgttctttgctgaaaactctcccgtcccagAATCTCCAGGGGCCTTGAACCTGCAAGATCTCCCAGATGGACAAGACAGCAGGTTCAGTGCTGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaggacaccctggggcaggctgtagtggtagtaatctggaaatcacttg Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaagtcaatcaacatgttctttgctgaaaactctcccgtcccagAATCTCCAGGGGCCTTGAACCTGCAAGATCTCCCAGATGGACAAGACAGCAGGTTCAGTGCTGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaggacaccctggggcaggctgtagtggtagtaatctggaaatcacttg #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGATGAG-AATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagatGACATTGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGGCAAGCTTTTGGGGACTTTTCTCCCA-AGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAG-AATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagatGACATTGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGGCAAGCTTTTGGGGACTTTTCTCCC-AAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAG-AATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGcAATGGGTGGCAAGCTTTTGGGGACTTTTCTCCCAA-GATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGA-ATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGGCAAGCTTTTGGGGACTTTTCTCCCA-AGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAG-AATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGGCAAGCTTTTGGGGACTTTTCTCCCA-AGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAG-AATGGATGGCAAGCCTTTGGGGACTTCTCTCCC---ACAGACGTTCATAA ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGGCAAGCTTTTGGGGACTTTTCTCCCAAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAG-AATGGATGGCAAGCCTTTGGGGACTTCTCTCCC---ACAGACGTTCATAA ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGGCAAGCTTTTGGGGACTTTTCTCCCAAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGCAATGGGTGGCAAGCTTTTGGGGACTTTTCTCCCAAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCC-ACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggtgcttgtttgtatgaggttctgacaaacactcctctttcaaacacagacAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCCACCTTCTCTCAGCCCTTTGGGGGTGGAACCC-CATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAggtaagtgagtacaaatgacaggggaaaggatggagaatggaggctatatg Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCC-ACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggtgcttgtttgtatgaggttctgacaaacactcctctttcaaacacagacAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCCACCTTCTCTCAGCCCTTTGGGGGTGGAACC-CCATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAggtaagtgagtacaaatgacaggggaaaggatggagaatggaggctatatg Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtttgtatgaggttctgacaaacactcctctttcaaacacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCCACCTTCTCTCAGCCCTTTGGGGGTGGAACCCCATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaagtgagtacaaatgacaggggaaaggatggagaatggaggctatatg Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCC-CACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtttgtatgaggttctgacaaacactcctctttcaaacacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCCACCTTCTCTCAGCCCTTTGGGGGTGGAACCC-CATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaagtgagtacaaatgacaggggaaaggatggagaatggaggctatatg Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTG-CCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtttgtatgaggttctgacaaacactcctctttcaaacacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCCACCTTCTCTCAGCCCTTTGGGGGTGGAACCC-CATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaagtgagtacaaatgacaggggaaaggatggagaatggaggctatatg Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtttgtatgaggttctgacaaacactcctctttcaaacacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCCACCTTCTCTCAGCCCTTTGGGGGTGGAACCCCATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaagtgagtacaaatgacaggggaaaggatggagaatggaggctatatg Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtttgtatgaggttctgacaaacactcctctttcaaacacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCCACCTTCTCTCAGCCCTTTGGGGGTGGAACCCCATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaagtgagtacaaatgacaggggaaaggatggagaatggaggctatatg Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtttgtatgaggttctgacaaacactcctctttcaaacacagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCCACCTTCTCTCAGCCCTTTGGGGGTGGAACCCCATGGGTGGAGGTTCTGGGGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaagtgagtacaaatgacaggggaaaggatggagaatggaggctatatg #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGT-CTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagccCGTGAATACAATGCACGCCTGTTTGGTCCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTG-CACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGT-CTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagccCGTGAATACAATGCACGCCTGTTTGGTCCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGT-GCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTC-TGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTG-CACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGT-CTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTG-CACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTG-TTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtctaaagctggccttttgttgttgttcttaaacagACCCCACTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGCTTGCAGGCATTGTTGCGCAGCGAAGCCCATGCTGTGCCCC-AATA---CATATGCCTGAGTTTGAGggtaatatgccaattactcctgtaccaaaaacaatgatataaacccaggag Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTG-TTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtctaaagctggccttttgttgttgttcttaaacagACCCCACTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGCTTGCAGGCATTGTTGCGCAGCGAAGCCCATGCTGTGCCCC-AATA---CATATGCCTGAGTTTGAGggtaatatgccaattactcctgtaccaaaaacaatgatataaacccaggag Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTG-TTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccttttgttgttgttcttaaacagACCCCACTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGgctcatacctgtgaaaatgtattgccatcttggacctcccacgagCTCAGAGCAGGT---GCAGCTGCCCCTGAGTTGcTTGCAGGCATTGTTGCGCAGCGAAGCCCATGCTGTGCCCCAATA----CATATGCCTGAGTTTGAGGgtaatatgccaattactcctgtaccaaaaacaatgatataaacccaggag Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCT--CCG GGCAGGTGCTGCAGCCCCAGAGCTG-TTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccttttgttgttgttcttaaacagACCCCACTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTGCTTGCAGGCATTGTTGCGCAGCGAAGCCCATGCTGTGCCCCAA----TACATATGCCTGAGTTTGAGGgtaatatgccaattactcctgtaccaaaaacaatgatataaacccaggag Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTG-TTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccttttgttgttgttcttaaacagACCCCACTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGCTTGCAGGCATTGTTGCGCAGCGAAGCCCATGCTGTGCCCCAA----TACATATGCCTGAGTTTGAGGgtaatatgccaattactcctgtaccaaaaacaatgatataaacccaggag Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccttttgttgttgttcttaaacagACCCCACTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACctgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTGCTTGCAGGCATTGTTGCGCAGCGAAGCCCATGCTGTGCCCCAATA---CATATGCCTGAGTTTGAGGgtaatatgccaattactcctgtaccaaaaacaatgatataaacccaggag Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTT---GCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccttttgttgttgttcttaaacagACCCCACTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACctgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTG--CTTGCAGGCATTGTTGCGCAGCGAAGCCCATGCTGTGCCCCA----ATACATATGCCTGAGTTTGAGGgtaatatgccaattactcctgtaccaaaaacaatgatataaacccaggag Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccttttgttgttgttcttaaacagACCCCACTACATCTTGCCGTAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGCTTGCAGGCATTGTTGCGCAGCGAAGCCCATGCTGTGCCCCAATA---CATATGCCTGAGTTTGAGGgtaatatgccaattactcctgtaccaaaaacaatgatataaacccaggag #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCAT-CTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCTGCATCCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCG-CCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCAT-CTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCTGCATCCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCG-CCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCAT-CTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCTGCATcCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGC-CATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCAT-CTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCTGCATCCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTC-GCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCAT-CTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCTGCATCCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTC-GCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCTGCATCCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCTGCATCCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCTGCATCCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAAC-ACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg agcttggttggttgtggccagactttgtcctcccaccccacccctaccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACCACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACAC-TTCTCACCTCCTTCTAAAGGCTggtatgtcttgccattagaatatggcgggccaggggaggaagtgggacagg Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAAC-ACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg agcttggttggttgtggccagactttgtcctcccaccccacccctaccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACCACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACAC-TTCTCACCTCCTTCTAAAGGCTggtatgtcttgccattagaatatggcgggccaggggaggaagtgggacagg Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAAC-ACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG agcttggttggttgtggccagactttgtcctcccaccccacccctaccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACcACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTCT-CACCTCCTTCTAAAGGCTGgtatgtcttgccattagaatatggcgggccaggggaggaagtgggacagg Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAA-CACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG agcttggttggttgtggccagactttgtcctcccaccccacccctaccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACCACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTT-CTCACCTCCTTCTAAAGGCTGgtatgtcttgccattagaatatggcgggccaggggaggaagtgggacagg Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAA-CACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG agcttggttggttgtggccagactttgtcctcccaccccacccctaccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACCACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTT-CTCACCTCCTTCTAAAGGCTGgtatgtcttgccattagaatatggcgggccaggggaggaagtgggacagg Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAAC-ACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTT--ACTCGCCTCCTTCTAAAGGCTG agcttggttggttgtggccagactttgtcctcccaccccacccctaccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACCACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTCT---CACCTCCTTCTAAAGGCTGgtatgtcttgccattagaatatggcgggccaggggaggaagtgggacagg Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAAC-ACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTT--ACTCGCCTCCTTCTAAAGGCTG agcttggttggttgtggccagactttgtcctcccaccccacccctaccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACCACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTCT---CACCTCCTTCTAAAGGCTGgtatgtcttgccattagaatatggcgggccaggggaggaagtgggacagg Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG agcttggttggttgtggccagactttgtcctcccaccccacccctaccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACCACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTCTCACCTCCTTCTAAAGGCTGgtatgtcttgccattagaatatggcgggccaggggaggaagtgggacagg #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCT-GAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcaggtGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTG-TCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCT-GAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcaggtGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTT-GTCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGTCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCT-GAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGT-CTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCT-GAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTG-TCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGTCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGTCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTCGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGTCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTG-GGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagggCCAGGGCTGTCCCTAGGGGATACAGCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGCGGATTGAGAAGCCTGGTGGACACATACAGGAAAA-TCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcctttatatctgtgat Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTG-GGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagggCCAGGGCTGTCCCTAGGGGATACAGCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGCGGATTGAGAAGCCTGGTGGACACATACAGGAAA-ATCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcccctacaaatgtggc Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGCGGATTGAGAAGCCTGGTGGACACATACAGGAAAATCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcctttatatctgtgat Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTG-GGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGCGGATTGAGAAGCCTGGTGGACACATACAGGAA-AATCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcctttatatctgtgat Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTG-GGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGCGGATTGAGAAGCCTGGTGGACACATACAGGAAAA-TCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcctttatatctgtgat Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGCGGATTGAGAAGCCTGGTGGACACATACAGGAAAATCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcctttatatctgtgat Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGCGGATTGAGAAGCCTGGTGGACACATACAGGAAAATCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcctttatatctgtgat Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGCGGATTGAGAAGCCTGGTGGACACATACAGGAAAATCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcctttatatctgtgat #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcacttaactaaatttagggatttgcttccttccttaggaGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTCTTCCAGA-ACTGTTTACGTTACATGCAggtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from CESAR gtGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcacttaactaaatttagggatttgcttccttccttaggaGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTCTTCCAG-AACTGTTTACGTTACATGCAggtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTCTTCCAGAACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Spaln_nt2Genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTCTTCCAGA-ACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Pairagon ----------------------------------------------------GATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG TTGGTCTCCCTTTCACTTAACTAAATTTAGGGATTTGCTTCCTTCCTTAGGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTCTTCCAGA-ACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTCTTCCAGAACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTCTTCCAGAACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from GeneWise ATT TTGgtctccctttcacttaactaaatttagggatttgcttccttccttaggagatgttttgaatattcgaccccatgaaattttatacccctctcttccagaactgtttacgttacatgcaggtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACCAggtgagttagtccatttggtctccctttcacttaactaaatttagctgaat Alignment from CESAR GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACCAggtgagttagtccatttggtctccctttcacttaactaaatttagggattt Alignment from Spaln_aa2Genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGGTG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATcCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACCAGGTGAgttagtccatttggtctccctttcacttaactaaatttagctgaat Alignment from Spaln_nt2Genome GAGCTAAGTTATC-AAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttagctgaat Alignment from Pairagon GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATA-TCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttagctgaat Alignment from Exonerate_protein2genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttagctgaat Alignment from Exonerate_coding2genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttagctgaat Alignment from GeneWise -GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGGT- ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATCTTTCTGGACCAGGTGAgttagtccatttggtctccctttcacttaactaaatttagctgaat #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACC-GCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagacCACCTTTTTCATTGTCGATTCAATGCCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTCGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAG-ACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACC-GCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagacCACCTTTTTCATTGTCGATTCAATGCCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTCGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAG-ACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGATTCAATGCCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTCGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCAC-CGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGATTCAATGCCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTCGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCC-AGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCAC-CGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGATTCAATGCCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTCGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCC-AGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGATTCAATGCCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTCGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGATTCAATGCCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTCGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTC---TGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGATTCAATGCCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTCGCTTTCTGTGCACCCCCAAAGCCAAGACCCCG---CCCAGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATTGAGGT-AGGTTCAGGCCCAGTTCGAATC---------CATCAGATTggtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from CESAR CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATTGAGG-TAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTggtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Spaln_aa2Genome CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATcCTCCAACTCCAACCACCAGTCTCCTTTCGATTGAGGTA-GGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Spaln_nt2Genome CTCAGTGTGGATGATT-TCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATTGAGGT-AGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Pairagon CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATTGAGGT-AGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATTGAGGTAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATTGAGGTAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCCTCCAACTCCAACCACCAGTCTCCTTTCGATTGAGGTAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTAT-GCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggaggcttcgacatagttgcataactaatgaccattgtctttgcacagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTGGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGACCTCTATCGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCA-TTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttccttgcaactgacagttgactgaacaccatagttgcta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTAT-GCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggaggcttcgacatagttgcataactaatgaccattgtctttgcacagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTGGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGACCTCTATCGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTC-ATTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttccttgcaactgacagttgactgaacaccatagttgcta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggaggcttcgacatagttgcataactaatgaccattgtctttgcacagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTGGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGACCTCTATCGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCATTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttccttgcaactgacagttgactgaacaccatagttgcta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTAT-GCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggaggcttcgacatagttgcataactaatgaccattgtctttgcacagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTGGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGACCTCTATCGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCA-TTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttccttgcaactgacagttgactgaacaccatagttgcta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTAT-GCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggaggcttcgacatagttgcataactaatgaccattgtctttgcacagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTGGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGACCTCTATCGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCA-TTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttccttgcaactgacagttgactgaacaccatagttgcta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggaggcttcgacatagttgcataactaatgaccattgtctttgcacagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTGGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGACCTCTATCGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCATTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttccttgcaactgacagttgactgaacaccatagttgcta Alignment from Exonerate_coding2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggaggcttcgacatagttgcataactaatgaccattgtctttgcacagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTGGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGACCTCTATCGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCATTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttccttgcaactgacagttgactgaacaccatagttgcta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggaggcttcgacatagttgcataactaatgaccattgtctttgcacagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTGGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGCTATGCAGACCTCTATCGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCATTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttccttgcaactgacagttgactgaacaccatagttgcta #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCCCTGCAGCAT---G-TGTCTATTCAGGGggtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from CESAR AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCCCTGCAGCAT---G-TGTCTATTCAGGGggtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Spaln_aa2Genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAAcCTGAAGATTGGCTCCTACACAGGCCCCCTGCAGCATGTGTCTATTCAGGGGGTGAgtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Spaln_nt2Genome AAAACTGGAAAAC-TGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCCCTGCAGCATG----TGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Pairagon AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCCCTGCAGCATG----TGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Exonerate_protein2genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCCCTGCAGCATGTGTCTATTCAGGGGGTGAgtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Exonerate_coding2genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCCCTGCAGCATGTGTCTATTCAGGGGGTGAgtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from GeneWise tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagaaaactggaaaacctgaagattggctcctacacaggccccctgcagcatgtgtctattcagggggtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ttcctatacaatgtggatatctactgggctgcccattgctgctcttctaggTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGA-TGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtaagtgaattgaccttccagctggctgctattaagttcagggttactaa Alignment from CESAR gTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ttcctatacaatgtggatatctactgggctgcccattgctgctcttctaggTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTG-ATGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtaagtgaattgaccttccagctggctgctattaagttcagggttactaa Alignment from Spaln_aa2Genome GTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ttcctatacaatgtggatatctactgggctgcccattgctgctcttctagGTGCAGCTTGACTcTCAGAGGAGGTCAGGAGTTATTACCTGAT-GGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtaagtgaattgaccttccagctggctgctattaagttcagggttactaa Alignment from Spaln_nt2Genome GTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ttcctatacaatgtggatatctactgggctgcccattgctgctcttctagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGA-TGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtaagtgaattgaccttccagctggctgctattaagttcagggttactaa Alignment from Pairagon GTGCAGCTTGACT-TCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ttcctatacaatgtggatatctactgggctgcccattgctgctcttctagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGA-TGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtaagtgaattgaccttccagctggctgctattaagttcagggttactaa Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ttcctatacaatgtggatatctactgggctgcccattgctgctcttctagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGATGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtaagtgaattgaccttccagctggctgctattaagttcagggttactaa Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ttcctatacaatgtggatatctactgggctgcccattgctgctcttctagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGATGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtaagtgaattgaccttccagctggctgctattaagttcagggttactaa Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG ttcctatacaatgtggatatctactgggctgcccattgctgctcttctagGTGCAGCTTGACTCTCAGAGGAGGTCAGGAGTTATTACCTGATGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtaagtgaattgaccttccagctggctgctattaagttcagggttactaa #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTACGTCCCTGTCCTTGCCAATGTGGGCCCACTGGATC-ACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from CESAR GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTACGTCCCTGTCCTTGCCAATGTGGGCCCACTGGAT-CACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Spaln_aa2Genome GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAcGTCCCTGTCCTTGCCAATGTGGGCCCACTGGATCA-CAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Spaln_nt2Genome GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTACGTCCCTGTCCTTGCCAATGTGGGCCCACTGGATC-ACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Pairagon GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTACGTCCCTGTCCTTGCCAATGTGGGCCCACTGGATC-ACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTACGTCCCTGTCCTTGCCAATGTGGGCCCACTGGATCACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Exonerate_coding2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTACGTCCCTGTCCTTGCCAATGTGGGCCCACTGGATCACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTACGTCCCTGTCCTTGCCAATGTGGGCCCACTGGATCACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACA-CGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACCGTGCTCATTTCTTTGTGGAGGATGCAACTA-TGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from CESAR TTTCACTATGAAAATACA-CGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACCGTGCTCATTTCTTTGTGGAGGATGCAACTATGG-TTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Spaln_aa2Genome TTTCACTATGAAAATACA-CGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACAcCGTGCTCATTTCTTTGTGGAGGATGCAACTAT-GGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACCGTGCTCATTTCTTTGTGGAGGATGCAACTA-TGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Pairagon TTTCACTATGAAAATACACGG-GCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACCGTGCTCATTTCTTTGTGGAGGATGCAACTA-TGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACCGTGCTCATTTCTTTGTGGAGGATGCAACTATGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACCGTGCTCATTTCTTTGTGGAGGATGCAACTATGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACCGTGCTCATTTCTTTGTGGAGGATGCAACTATGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATC-GATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagatTTGGTGGCTCAGAACATTCGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAG-AACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from CESAR atTTGGTGGCCCAGAACATC-GATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagatTTGGTGGCTCAGAACATTCGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCA-GAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATC-GATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTcGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGA-ACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACA-TCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTCGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAG-AACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Pairagon ATTTGGTGGCCCAGAACA-TCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTCGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAG-AACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTCGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTCGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTCGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGC-ATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAA-TCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGC-ATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCCATTGTGCAGACAGCGCCAAACGTAAAGA-CCTTAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Spaln_nt2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAG-CATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCCATTGTGCAGACAGCGCCAAACGTAAAGA-CCTTAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAG-CATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCCATTGTGCAGACAGCGCCAAACGTAAAGACCTT-AATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Exonerate_protein2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Exonerate_coding2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from GeneWise CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCAT-GATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aacaactggactatgcatatttagtggttgaccactgtctgtcttcacaggTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCAGTATGCCTACCATCGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACC-TCAGAACCCTGTCaggtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from CESAR gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCAT-GATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aacaactggactatgcatatttagtggttgaccactgtctgtcttcacaggTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCAGTATGCCTACCATCGATGGCGCTTGTTGCTCATTAAGCATCCCTTACA-ACCTCAGAACCCTGTCaggtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCAT-GATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCAGTATGCCTACCATcGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAA-CCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCAT-GATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCAGTATGCCTACCATCGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAA-CCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Pairagon GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCAT-GATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCAGTATGCCTACCATCGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAA-CCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCAGTATGCCTACCATCGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCAGTATGCCTACCATCGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTTCAGTATGCCTACCATCGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ggactccccggctcctcgagccatttgatgttcttactgtttttctccagtgGATGGGAAGTCTCGAGACCTCTTTACATGCTTTCACAAGGACATTCATTGCTG-TCCTGCAAGCAATACTgggtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from CESAR tgGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ggactccccggctcctcgagccatttgatgttcttactgtttttctccagtgGATGGGAAGTCTCGAGACCTCTTTACATGCTTTCACAAGGACATTCATTGCTG-TCCTGCAAGCAATACTgggtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGGG----- ggactccccggctcctcgagccatttgatgttcttactgtttttctccagTGGATGGGAAGTCTCGAGACcTCTTTACATGCTTTCACAAGGACATTCATTGCTGTCCTGCAAGCAATACTGGGTAAGAAgttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGAT-TCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgtttttctccagTGGATGGGAAGTCTCGAGACCTCTTTACATGCTTTCACAAGGACATTCATTGCTG-TCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Pairagon TGGATGGGAAGTCTCGAGA-TTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgtttttctccagTGGATGGGAAGTCTCGAGACCTCTTTACATGCTTTCACAAGGACATTCATTGCTG-TCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Exonerate_protein2genome CTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgTTTTTCTCCAGTGGATGGGAAGTCTCGAGACCTCTTTACATGCTTTCACAAGGACATTCATTGCTGTCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Exonerate_coding2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgtttttctccagTGGATGGGAAGTCTCGAGACCTCTTTACATGCTTTCACAAGGACATTCATTGCTGTCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from GeneWise ggactccccggctcctcgagccatttgatgttcttactgtttttctccagtggatgggaagtctcgagacctctttacatgctttcacaaggacattcattgctgtcctgcaagcaatactgggtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTG-GTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGCGTCTACCTGCAGCTGCTAACCTCAGGCTACC-ACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTG-GTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGCGTCTACCTGCAGCTGCTAACCTCAGGCTAC-CACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGCGTCTACCTGCAGCTGCTAACCTCAGGCTACCACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTG-GTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGCGTCTACCTGCAGCTGCTAACCTCAGGCTACC-ACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTG-GTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGCGTCTACCTGCAGCTGCTAACCTCAGGCTACC-ACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGCGTCTACCTGCAGCTGCTAACCTCAGGCTACCACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGCGTCTACCTGCAGCTGCTAACCTCAGGCTACCACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGCGTCTACCTGCAGCTGCTAACCTCAGGCTACCACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATG-CAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagagCCACTAGACGTGGTGGGTCGTGTGATGCCTGTATATCAATGGAGCTATCACAACACACCAGCTTC-CGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATG-CAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagagCCACTAGACGTGGTGGGTCGTGTGATGCCTGTATATCAATGGAGCTATCACAACACACCAGCTTC-CGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCA-GTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCCTGTATATCAATGGAGCTATCACAACACACCAGCTTCC-GTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCA-GTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCCTGTATATCAATGGAGCTATCACAACACACCAGCTTCC-GTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAG---TATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCCTGTATAT--CAATGGAGCTATCACAACACACCAGCTTCC-GTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGC-AGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCC-GTCGGAGCCCCTAGTGTCAggtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGC-AGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCC-GTCGGAGCCCCTAGTGTCAggtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGC-AGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCcAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCGTCG-GAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGC-AGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCG-TCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAG-CAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCG-TCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGC-AGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCA gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGC-AGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCA gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGAC-AACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagatCGCTCCCCAGACATTGACCAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCT-AGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from CESAR atCGCTCCCCAGATATTGAC-AACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagatCGCTCCCCAGACATTGACCAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCC-TAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACCAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACA-ACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACCAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCT-AGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Pairagon ATCGCTCCCCAGATATTGA-CAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACCAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCT-AGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACCAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACCAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACCAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAA-GCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tagtcttcctccctttttgttctatttcagaacccccttctctgttacaggACAGAGGTGATGTTTATGGCAACCCGAGAACTTGTTCGTATCCTCCAACGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGT-ACTTTTTTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtgtgttttgaacatatggtagtaccttcccagtcattggaacacaggac Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAA-GCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tagtcttcctccctttttgttctatttcagaacccccttctctgttacaggACAGAGGTGATGTTTATGGCAACCCGAGAACTTGTTCGTATCCTCCAACGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTG-TACTTTTTTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtgtgttttgaacatatggtagtaccttcccagtcattggaacacaggac Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATACGG tagtcttcctccctttttgttctatttcagaacccccttctctgttacagGACAGAGGTGATGTTTATGGCAACCCGAGAACTTGTTCGTATCCTCCAACGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTACTTTTTTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGTGTTTTGAACATATGGtagtaccttcccagtcattggaacacaggac Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTG-CCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tagtcttcctccctttttgttctatttcagaacccccttctctgttacagGACAGAGGTGATGTTTATGGCAACCCGAGAACTTGTTCGTATCCTCCAACGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGT-ACTTTTTTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgtgttttgaacatatggtagtaccttcccagtcattggaacacaggac Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAA-GCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tagtcttcctccctttttgttctatttcagaacccccttctctgttacagGACAGAGGTGATGTTTATGGCAACCCGAGAACTTGTTCGTATCCTCCAACGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGT-ACTTTTTTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgtgttttgaacatatggtagtaccttcccagtcattggaacacaggac Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATA tagtcttcctccctttttgttctatttcagaacccccttctctgttacagGACAGAGGTGATGTTTATGGCAACCCGAGAACTTGTTCGTATCCTCCAACGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTACTTTTTTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGTGTTTTGAACATAtggtagtaccttcccagtcattggaacacaggac Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATA tagtcttcctccctttttgttctatttcagaacccccttctctgttacagGACAGAGGTGATGTTTATGGCAACCCGAGAACTTGTTCGTATCCTCCAACGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTACTTTTTTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGTGTTTTGAACATAtggtagtaccttcccagtcattggaacacaggac Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATACGG tagtcttcctccctttttgttctatttcagaacccccttctctgttacagGACAGAGGTGATGTTTATGGCAACCCGAGAACTTGTTCGTATCCTCCAACGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTACTTTTTTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGTGTTTTGAACATATGGtagtaccttcccagtcattggaacacaggac #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCC-AGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCGGA-GGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGA-CCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCGGA-GGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACC-CAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAG-GGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGA-CCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCGG-AGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taaggcacataatgcctcaccatataccaatgtcttggtttgaatttcagaCTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCAGATTGTGGTGGGGGTCGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTAC-TCCTACACCTGACAATGCGGCAggtaagagcaaggtttcagagaaattatatgtgagacatcatgccagctgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taaggcacataatgcctcaccatataccaatgtcttggtttgaatttcagaCTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCAGATTGTGGTGGGGGTCGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTA-CTCCTACACCTGACAATGCGGCAggtaagagcaaggtttcagagaaattatatgtgagacatcatgccagctgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taaggcacataatgcctcaccatataccaatgtcttggtttgaatttcagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCAGATTGTGGTGGGGGTCGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACTCCTACACCTGACAATGCGGCAGgtaagagcaaggtttcagagaaattatatgtgagacatcatgccagctgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taaggcacataatgcctcaccatataccaatgtcttggtttgaatttcagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCAGATTGTGGTGGGGGTCGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTAC-TCCTACACCTGACAATGCGGCAGgtaagagcaaggtttcagagaaattatatgtgagacatcatgccagctgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taaggcacataatgcctcaccatataccaatgtcttggtttgaatttcagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCAGATTGTGGTGGGGGTCGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTAC-TCCTACACCTGACAATGCGGCAGgtaagagcaaggtttcagagaaattatatgtgagacatcatgccagctgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTG--GCACACCCTACGCCTGAAAATGCAGCAG taaggcacataatgcctcaccatataccaatgtcttggtttgaatttcagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCAGATTGTGGTGGGGGTCGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACT---CCTACACCTGACAATGCGGCAGgtaagagcaaggtttcagagaaattatatgtgagacatcatgccagctgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGT-GGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTG--GCACACCCTACGCCTGAAAATGCAGCAG taaggcacataatgcctcaccatataccaatgtcttggtttgaatttcagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCAGATTGTGGTGGGGGTCGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACT---CCTACACCTGACAATGCGGCAGgtaagagcaaggtttcagagaaattatatgtgagacatcatgccagctgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taaggcacataatgcctcaccatataccaatgtcttggtttgaatttcagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCAGATTGTGGTGGGGGTCGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACTCCTACACCTGACAATGCGGCAGgtaagagcaaggtttcagagaaattatatgtgagacatcatgccagctgc #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCT-GGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTCGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACC-TGAGCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGaggtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCT-GGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTCGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCA-ACCTGAGCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGaggtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTCGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCTGAGCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCT-GGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTCGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAA-CCTGAGCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCT-GGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTCGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAA-CCTGAGCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTCGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCTGAGCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Exonerate_coding2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTCGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCTGAGCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTCGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCTGAGCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGG-GACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGACGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACA-CCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGG-GACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGACGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACA-CCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGG-GACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAcGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCC-TCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGG-GACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGACGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACA-CCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGG-GACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGACGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACA-CCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGACGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGACGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGACGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTG-TGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGCTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCAT-ACACAGCATGTCTGCCaggtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTG-TGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGCTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCA-TACACAGCATGTCTGCCaggtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTG-TGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGcTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATA-CACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTG-TGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGCTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCAT-ACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTG-TGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGCTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCAT-ACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGCTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGCTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGCTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGC-GCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagtaatgtgctgctgttaaactagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTCGCAGTATTCATTATGTCCTACACAAGACCCCTCAAGT-CTGGGAGAGGGACTACaagtaagtctgagaggaggtaatgagtaagcactgttgtcccagagagacct Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGC-GCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagtaatgtgctgctgttaaactagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTCGCAGTATTCATTATGTCCTACACAAGACCCCTCAAG-TCTGGGAGAGGGACTACaagtaagtctgagaggaggtaatgagtaagcactgttgtcccagagagacct Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGC-GCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagtaatgtgctgctgttaaactagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTcGCAGTATTCATTATGTCCTACACAAGACCCCTCAAGTC-TGGGAGAGGGACTACAAgtaagtctgagaggaggtaatgagtaagcactgttgtcccagagagacct Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAG-CGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagtaatgtgctgctgttaaactagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTCGCAGTATTCATTATGTCCTACACAAGACCCCTCAAG-TCTGGGAGAGGGACTACAAgtaagtctgagaggaggtaatgagtaagcactgttgtcccagagagacct Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAG-CGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagtaatgtgctgctgttaaactagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTCGCAGTATTCATTATGTCCTACACAAGACCCCTCAAG-TCTGGGAGAGGGACTACAAgtaagtctgagaggaggtaatgagtaagcactgttgtcccagagagacct Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagtaatgtgctgctgttaaactagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTCGCAGTATTCATTATGTCCTACACAAGACCCCTCAAGTCTGGGAGAGGGACTACAAgtaagtctgagaggaggtaatgagtaagcactgttgtcccagagagacct Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagtaatgtgctgctgttaaactagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTCGCAGTATTCATTATGTCCTACACAAGACCCCTCAAGTCTGGGAGAGGGACTACAAgtaagtctgagaggaggtaatgagtaagcactgttgtcccagagagacct Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagtaatgtgctgctgttaaactagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTCGCAGTATTCATTATGTCCTACACAAGACCCCTCAAGTCTGGGAGAGGGACTACAAgtaagtctgagaggaggtaatgagtaagcactgttgtcccagagagacct #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTG-ATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGCATCGCTGTGCTCATCTTTGCTGTCAGTGCTA-TACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTG-ATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGCATCGCTGTGCTCATCTTTGCTGTCAGTGCT-ATACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGCATCGCTGTGCTCATCTTTGCTGTCAGTGCTATACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTG-ATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGCATCGCTGTGCTCATCTTTGCTGTCAGTGCTA-TACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTG-ATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGCATCGCTGTGCTCATCTTTGCTGTCAGTGCTA-TACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGCATCGCTGTGCTCATCTTTGCTGTCAGTGCTATACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGCATCGCTGTGCTCATCTTTGCTGTCAGTGCTATACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGCATCGCTGTGCTCATCTTTGCTGTCAGTGCTATACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg #### Pcnxl3_ID1175_18 --> 1 - 0 Original Alignment gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAG-CGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacaggTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAG-CCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from CESAR gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAG-CGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacaggTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCA-GCCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Spaln_aa2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGCCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Spaln_nt2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGC-GGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAG-CCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Pairagon GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAG-CGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAG-CCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Exonerate_protein2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGCCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Exonerate_coding2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGCCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from GeneWise GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGCCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCG-TTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagtaTTCACCTTATGCTTTCCACTTTGTATTCCTGCTGGGGCTCCTGCCCCAGG-CAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from CESAR tgTTCACCTTATGCTTTCCG-TTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagtaTTCACCTTATGCTTTCCACTTTGTATTCCTGCTGGGGCTCCTGCCCCAG-GCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCACTTTGTATTCCTGCTGGGGCTCCTGCCCCAGGCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCG-TTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCACTTTGTATTCCTGCTGGGGCTCCTGCCCCAGG-CAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Pairagon TGTTCACCTTATGCTTTCCG-TTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCACTTTGTATTCCTGCTGGGGCTCCTGCCCCAGG-CAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCACTTTGTATTCCTGCTGGGGCTCCTGCCCCAGGCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCACTTTGTATTCCTGCTGGGGCTCCTGCCCCAGGCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCACTTTGTATTCCTGCTGGGGCTCCTGCCCCAGGCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACA-AGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagcaCCTGAGGAGACAGGTCAGCGGGAATGCACACAGCAATGCGAGGAGAGCGCAGGCTATCTGGA-ACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACA-AGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagcaCCTGAGGAGACAGGTCAGCGGGAATGCACACAGCAATGCGAGGAGAGCGCAGGCTATCTGG-AACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACACAGCAATGCGAGGAGAGCGCAGGCTATCTGGAACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACA-AGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACACAGCAATGCGAGGAGAGCGCAGGCTATCTGGA-ACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACA-AGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACACAGCAATGCGAGGAGAGCGCAGGCTATCTGGA-ACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACACAGCAATGCGAGGAGAGCGCAGGCTATCTGGAACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACACAGCAATGCGAGGAGAGCGCAGGCTATCTGGAACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACACAGCAATGCGAGGAGAGCGCAGGCTATCTGGAACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAAC-AACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa ccttgataggaagatgattgcttagtcttcaaattctcccctgaacctagacATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACCAATGTAATTGTTACGTCTGCGGGCCGAGAAATGC-GAGGCTCAGCTCCAAGGAGAAACTGagtaagtggcaaactggcaagcagatgtgttgtgataacagtcatcctcac Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAAC-AACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa ccttgataggaagatgattgcttagtcttcaaattctcccctgaacctagacATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACCAATGTAATTGTTACGTCTGCGGGCCGAGAAATG-CGAGGCTCAGCTCCAAGGAGAAACTGagtaagtggcaaactggcaagcagatgtgttgtgataacagtcatcctcac Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAAC-AACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccttgataggaagatgattgcttagtcttcaaattctcccctgaacctagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACcAATGTAATTGTTACGTCTGCGGGCCGAGAAATGCG-AGGCTCAGCTCCAAGGAGAAACTGAgtaagtggcaaactggcaagcagatgtgttgtgataacagtcatcctcac Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAAC-AACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccttgataggaagatgattgcttagtcttcaaattctcccctgaacctagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACCAATGTAATTGTTACGTCTGCGGGCCGAGAAATGC-GAGGCTCAGCTCCAAGGAGAAACTGAgtaagtggcaaactggcaagcagatgtgttgtgataacagtcatcctcac Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAA-CAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccttgataggaagatgattgcttagtcttcaaattctcccctgaacctagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACCAATGTAATTGTTACGTCTGCGGGCCGAGAAATGC-GAGGCTCAGCTCCAAGGAGAAACTGAgtaagtggcaaactggcaagcagatgtgttgtgataacagtcatcctcac Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccttgataggaagatgattgcttagtcttcaaattctcccctgaacctagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACCAATGTAATTGTTACGTCTGCGGGCCGAGAAATGCGAGGCTCAGCTCCAAGGAGAAACTGAgtaagtggcaaactggcaagcagatgtgttgtgataacagtcatcctcac Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccttgataggaagatgattgcttagtcttcaaattctcccctgaacctagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACCAATGTAATTGTTACGTCTGCGGGCCGAGAAATGCGAGGCTCAGCTCCAAGGAGAAACTGAgtaagtggcaaactggcaagcagatgtgttgtgataacagtcatcctcac Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccttgataggaagatgattgcttagtcttcaaattctcccctgaacctagACATCAAAGAGCTGGTACGGGAGCAGAGCAGCAACCAATGTAATTGTTACGTCTGCGGGCCGAGAAATGCGAGGCTCAGCTCCAAGGAGAAACTGAgtaagtggcaaactggcaagcagatgtgttgtgataacagtcatcctcac #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCC-ACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcaggGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCCTCACCTCCTGTACACTGCAGTTTCCAGCGCT-TGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCC-ACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcaggGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCCTCACCTCCTGTACACTGCAGTTTCCAGCGC-TTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCA-CGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCCTCACCTCCTGTACACTGCAGTTTCCAGCGCT-TGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCA-CGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCCTCACCTCCTGTACACTGCAGTTTCCAGCGCT-TGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Exonerate_coding2genome acataactgacaagataggaacataacttgacacccattcgttcctgcagggatcctggtatagagatgacagtgtttcagaaggttagttccctcacctcctgtacactgcagtttccagcgcttgtaataggctttaaccatgtgtcagtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTG-GCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGCGCTGTGTACTCAGAGCAGGACACAGGGCAGA-GCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTG-GCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGCGCTGTGTACTCAGAGCAGGACACAGGGCAG-AGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGCGCTGTGTACTCAGAGCAGGACACAGGGCAGAGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTG-GCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGCGCTGTGTACTCAGAGCAGGACACAGGGCAGA-GCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTG-GCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGCGCTGTGTACTCAGAGCAGGACACAGGGCAGA-GCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGCGCTGTGTACTCAGAGCAGGACACAGGGCAGAGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGC-TGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGCGCTGTGTACTCAGAGCAGGACACAGGGCAGAG-CACAGGCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGCGCTGTGTACTCAGAGCAGGACACAGGGCAGAGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTT-GCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTCGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTC-AAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTT-GCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTCGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTG-GTCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTCGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTCGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGT-CAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTT-GCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTCGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGT-CAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGT--CCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTCGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCA---AGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGC---CCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTT--CGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCA-AGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTT-GCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTCGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCA-AGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATC-TTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttaggtGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTCTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTG-GCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATC-TTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttaggtGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTCTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTT-GGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATC-TTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTcTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGG-CATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTAT-CTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTCTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTG-GCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTA-TCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTCTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTG-GCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATC-TTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTC--GTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTCTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGG---CATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Exonerate_coding2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATC-TTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTC--GTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTCTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGG---CATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATT-ATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTCTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGG-CATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACT-CCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctggaagcagccgtcactgtgttttttgttgttttgcaggaCATGTTATGGTGAATGGCCCTACCACCCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTG-TCCTGCAGTCCCTATAggtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACT-CCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctggaagcagccgtcactgtgttttttgttgttttgcaggaCATGTTATGGTGAATGGCCCTACCACCCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTG-TCCTGCAGTCCCTATAggtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACT-CCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCcCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGT-CCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACT-CCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTG-TCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCA-CTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTG-TCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGG-GAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgggatggtttattttctaagacaggtcttacttaatggcatttcattagggCCACCCCCAGCTGGTTTCAGGGACACCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGTGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCATCCTACGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCCTGGCGGCGGCTCCAGAAACTGCGGCAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCA-GGGGGCCAACGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTTaagtatgtctgagtctggtcagaccaggacagtggatgccaaagcgttttta Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGG-GAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgggatggtttattttctaagacaggtcttacttaatggcatttcattagggCCACCCCCAGCTGGTTTCAGGGACACCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGTGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCATCCTACGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCCTGGCGGCGGCTCCAGAAACTGCGGCAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGG-GGCCAACGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTTaagtatgtctgagtctggtcagaccaggacagtggatgccaaagcgttttta Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAG-CTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcttacttaatggcatttcattagGGCCACCCCCAGCTGGTTTCAGGGACACCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGTGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCATCCTACGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCCTGGCGGCGGCTCCAGAAACTGCGGCAAgCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGG-GCCAACGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTTAAgtatgtctgagtctggtcagaccaggacagtggatgccaaagcgttttta Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGA-GCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcttacttaatggcatttcattagGGCCACCCCCAGCTGGTTTCAGGGACACCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGTGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCATCCTACGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCCTGGCGGCGGCTCCAGAAACTGCGGCAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCA-GGGGGCCAACGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTTAAgtatgtctgagtctggtcagaccaggacagtggatgccaaagcgttttta Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGG-GAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcttacttaatggcatttcattagGGCCACCCCCAGCTGGTTTCAGGGACACCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGTGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCATCCTACGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCCTGGCGGCGGCTCCAGAAACTGCGGCAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCA-GGGGGCCAACGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTTAAgtatgtctgagtctggtcagaccaggacagtggatgccaaagcgttttta Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcttacttaatggcatttcattagGGCCACCCCCAGCTGGTTTCAGGGACACCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGTGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCATCCTACGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCCTGGCGGCGGCTCCAGAAACTGCGGCAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGCCAACGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTTAAgtatgtctgagtctggtcagaccaggacagtggatgccaaagcgttttta Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcttacttaatggcatttcattagGGCCACCCCCAGCTGGTTTCAGGGACACCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGTGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCATCCTACGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCCTGGCGGCGGCTCCAGAAACTGCGGCAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGCCAACGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTTAAgtatgtctgagtctggtcagaccaggacagtggatgccaaagcgttttta Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcttacttaatggcatttcattagGGCCACCCCCAGCTGGTTTCAGGGACACCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGTGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCATCCTACGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCCTGGCGGCGGCTCCAGAAACTGCGGCAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGCCAACGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTTAAgtatgtctgagtctggtcagaccaggacagtggatgccaaagcgttttta #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGAC-TCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACCTCCCTCAACTATTTACCAAACATGCTGCTGG-TATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcttttctgctt Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGAC-TCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACCTCCCTCAACTATTTACCAAACATGCTGC-TGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcacttgtattt Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACCTCCCTCAACTATTTACCAAACATGCTGCTGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcttttctgctt Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGA-CTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACCTCCCTCAACTATTTACCAAACATGCTGCT-GGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcttttctgctt Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGA-CTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACCTCCCTCAACTATTTACCAAACATGCTGCT-GGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcttttctgctt Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACCTCCCTCAACTATTTACCAAACATGCTGCTGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcttttctgctt Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACCTCCCTCAACTATTTACCAAACATGCTGCTGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcttttctgctt Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACCTCCCTCAACTATTTACCAAACATGCTGCTGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcttttctgctt #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAG-TTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGCTTCCTACAGGGCTATATTGGCATCCCAC-TGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttaatctccctgcttttc Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAG-TTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGCTTCCTACAGGGCTATATTGGCATCCCA-CTGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagtatctttgtcttcc Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAG-TTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGcTTCCTACAGGGCTATATTGGCATCCCACT-GGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttaatctccctgcttttc Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAG-TTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGCTTCCTACAGGGCTATATTGGCA-TCCCACTGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttaatctccctgcttttc Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAG-TTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGCTTCCTACAGGGCTATATTGGCATCCCAC-TGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttaatctccctgcttttc Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGCTTCCTACAGGGCTATATTGGCATCCCACTGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttaatctccctgcttttc Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGCTTCCTACAGGGCTATATTGGCATCCCACTGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttaatctccctgcttttc Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGCTTCCTACAGGGCTATATTGGCATCCCACTGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttaatctccctgcttttc #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCT-TCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTCTCCAAGGAAAGGATGCTCCTCTCCTTCAGGTTGCTGA-TGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCT-TCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTCTCCAAGGAAAGGATGCTCCTCTCCTTCAGGTTGCTG-ATGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Spaln_aa2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTCTCCAAGGAAAGGATGCTCCTCTCCTTCAGGTTGCTGATGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Spaln_nt2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCT-TCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTCTCCAAGGAAAGGATGCTCCTCTCCTTCAGGTTGCTGA-TGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCT-TCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTCTCCAAGGAAAGGATGCTCCTCTCCTTCAGGTTGCTGA-TGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Exonerate_protein2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTCTCCAAGGAAAGGATGCTCCTCTCCTTCAGGTTGCTGATGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Exonerate_coding2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTCTCCAAGGAAAGGATGCTCCTCTCCTTCAGGTTGCTGATGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTCTCCAAGGAAAGGATGCTCCTCTCCTTCAGGTTGCTGATGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCT-CCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagcATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCTGCTCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTG-GGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCT-CCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagcATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCTGCTCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGGG-GGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCTGCTCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCC-AGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCTGCTCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTG-GGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCT-CCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCTGCTCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTG-GGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCTGCTCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCTGCTCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCTGCTCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCT-TCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from CESAR GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCT-TCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAcGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTT-CTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTT-CTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Pairagon GGGAAGCAGACAAAATCCACA-GAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTT-CTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACACGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGG-GTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG gaagcctccaatgcagacatggtgaacttgttgtttttttttaactttaggGAGGAGCAGGAGAAGCTGAATGTATGGCGTAGCCTTGCTAAATTTGGAAAACATGTATGGCT-CCAGGCGTCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtcgggtgttaagatccacacccaaagtgccccggatgcaagcgctttca Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGG-GTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG gaagcctccaatgcagacatggtgaacttgttgtttttttttaactttaggGAGGAGCAGGAGAAGCTGAATGTATGGCGTAGCCTTGCTAAATTTGGAAAACATGTATGGCT-CCAGGCGTCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtcgggtgttaagatccacacccaaagtgccccggatgcaagcgctttca Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG gaagcctccaatgcagacatggtgaacttgttgtttttttttaactttagGGAGGAGCAGGAGAAGCTGAATGTATGGCGTAGCCTTGCTAAATTTGGAAAACATGTATGGCTCCAGGCGTCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtcgggtgttaagatccacacccaaagtgccccggatgcaagcgctttca Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGG-GTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG gaagcctccaatgcagacatggtgaacttgttgtttttttttaactttagGGAGGAGCAGGAGAAGCTGAATGTATGGCGTAGCCTTGCTAAATTTGGAAAACATGTATGGCTC-CAGGCGTCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtcgggtgttaagatccacacccaaagtgccccggatgcaagcgctttca Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGG-GTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG gaagcctccaatgcagacatggtgaacttgttgtttttttttaactttagGGAGGAGCAGGAGAAGCTGAATGTATGGCGTAGCCTTGCTAAATTTGGAAAACATGTATGGCTC-CAGGCGTCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtcgggtgttaagatccacacccaaagtgccccggatgcaagcgctttca Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG gaagcctccaatgcagacatggtgaacttgttgtttttttttaactttagGGAGGAGCAGGAGAAGCTGAATGTATGGCGTAGCCTTGCTAAATTTGGAAAACATGTATGGCTCCAGGCGTCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtcgggtgttaagatccacacccaaagtgccccggatgcaagcgctttca Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG gaagcctccaatgcagacatggtgaacttgttgtttttttttaactttagGGAGGAGCAGGAGAAGCTGAATGTATGGCGTAGCCTTGCTAAATTTGGAAAACATGTATGGCTCCAGGCGTCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtcgggtgttaagatccacacccaaagtgccccggatgcaagcgctttca Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG gaagcctccaatgcagacatggtgaacttgttgtttttttttaactttagGGAGGAGCAGGAGAAGCTGAATGTATGGCGTAGCCTTGCTAAATTTGGAAAACATGTATGGCTCCAGGCGTCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtcgggtgttaagatccacacccaaagtgccccggatgcaagcgctttca #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGG-TGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAAcgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG-----GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAAcgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG-----GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCcAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGTGggGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGAT-CAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGG-----CTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGAT-CAAATATGGTGCCTTTGTTTTGGGGAGGAGTCA-----GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG-----GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG-----GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGC-ACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCT-CATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGC-ACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCCGCCTACCCCAAACGCACGGATGTCTGGTCAGTC-TCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCA-CCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCT-CATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAG-CACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCT-CATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGC-TTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCCTTTGTTGCCGTTGCACTAAGGCTGAAGCACA-CAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from CESAR GTCTTTTCTAAGTACCTCAGC-TTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCCTTTGTTGCCGTTGCACTAAGGCTGAAGCACA-CAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGC-TTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCCTTTGTTGCCGTTGCACTAAGGCTGAAGCACA-CAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Pairagon GTCTTTTCTAAGTACCTCAG-CTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCCTTTGTTGCCGTTGCACTAAGGCTGAAGCACA-CAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGG-ATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGCATGTACACAGTCCGAAAGGGGTACCGACCTGCCA-CTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from CESAR GTTCTTACAAGGTGG-ATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGCATGTACACAGTCCGAAAGGGGTACCGACCTGCCA-CTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Spaln_aa2Genome GTTCTTACAAGGTGG-ATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGcATGTACACAGTCCGAAAGGGGTACCGACCTGCCAC-TACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Spaln_nt2Genome GTTCTTACAAGGTGG-ATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGCATGTACACAGTCCGAAAGGGGTACCGACCTGCCA-CTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Pairagon GTTCTTACAAGGTGG-ATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGCATGTACACAGTCCGAAAGGGGTACCGACCTGCCA-CTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGCATGTACACAGTCCGAAAGGGGTACCGACCTGCCACTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGCATGTACACAGTCCGAAAGGGGTACCGACCTGCCACTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGCATGTACACAGTCCGAAAGGGGTACCGACCTGCCACTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCT-GAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaaggtGGTGTATCTCCACAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACA-CTCTGAGGAAGAATTCTTTGATCCCCATggtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCT-GAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaaggtGGTGTATCTCCACAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACA-CTCTGAGGAAGAATTCTTTGATCCCCATggtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACACTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCT-GAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACA-CTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCT-GAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACA-CTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACACTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACACTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from GeneWise -------------------------------------------------GGCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG GACAGGGCACCATCCTGAGCTTCCAAGGCTGAGCCAGATCTTTCTTGAAGGTGGTGTATCTCCACAGAGCTTGTCTCGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACACTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTC-ATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggggtgttagacctgatatgttttacctttcctcccggtgttctcctcagtCTGAGTCCTTACAGCCATGACGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCAACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCC-GCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaagtggctgatcatgttcccaaaagttagccaatacctatgcctgcag Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTC-ATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggggtgttagacctgatatgttttacctttcctcccggtgttctcctcagtCTGAGTCCTTACAGCCATGACGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCAACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCCATTGCTCACACCAACCAGGCCTTTGCAGCCTTC-CGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaagtggctgatcatgttcccaaaagttagccaatacctatgcctgcag Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggggtgttagacctgatatgttttacctttcctcccggtgttctcctcagTCTGAGTCCTTACAGCCATGACGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCAACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaagtggctgatcatgttcccaaaagttagccaatacctatgcctgcag Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGT-CATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggggtgttagacctgatatgttttacctttcctcccggtgttctcctcagTCTGAGTCCTTACAGCCATGACGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCAACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCC-GCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaagtggctgatcatgttcccaaaagttagccaatacctatgcctgcag Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGT-CATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggggtgttagacctgatatgttttacctttcctcccggtgttctcctcagTCTGAGTCCTTACAGCCATGACGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCAACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCC-GCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaagtggctgatcatgttcccaaaagttagccaatacctatgcctgcag Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggggtgttagacctgatatgttttacctttcctcccggtgttctcctcagTCTGAGTCCTTACAGCCATGACGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCAACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaagtggctgatcatgttcccaaaagttagccaatacctatgcctgcag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggggtgttagacctgatatgttttacctttcctcccggtgttctcctcagTCTGAGTCCTTACAGCCATGACGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCAACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCCATTGCTCACACCAACCAGGCCTTTGCAGCCTTCCGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaagtggctgatcatgttcccaaaagttagccaatacctatgcctgcag #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCAC-AGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaaaccaccatgttctttgtttggttttacttgaagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACCAGTGCAAGCGCGGGCCCAGGGAGCCGGGGCAGCA-CCGCCGTGGGAGCATGgtaggagtgcggcccagggagccggggcagcagccgccatgggagcatgg Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCAC-AGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaaaccaccatgttctttgtttggttttacttgaagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACCAGTGCAAGCGCGGGCCCAGGGAGCCGGGGCAGCA-CCGCCGTGGGAGCATGgtaggagtgcggcccagggagccggggcagcagccgccatgggagcatgg Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCAC-AGTGCCAGTGCAGGCCCAGGGAGT------------------------------------------------CGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaaaccaccatgttctttgtttggttttacttgaagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACcAGTGCAAGCGCGGGCCCAGGGAGCCGGGGCAGCACCGCCGTGGGAGCATGGTAGGAGTGCGGCCCAGGGAGCCGGGGCAGCAGCCGCCATGGGAGCATGg Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCAC-AGT GCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCA tcaatacaggtaaaaaaaccaccatgttctttgtttggttttacttgaagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACCAGTgcaagcgcgggcccagggagccggggcagcaccgccgtgggagcatggtagG--AGTGC-GGCCCAGGGAGCCGGGGCAGCAGCCGCCATGGGAGCA Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCA-CAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaaaccaccatgttctttgtttggttttacttgaagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACCAGTGCAAGCGCGGGCCCAGGGAGCCGGGGCAGCA-CCGCCGTGGGAGCATGgtaggagtgcggcccagggagccggggcagcagccgccatgggagcatgg Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaaaccaccatgttctttgtttggttttacttgaagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACCAGTGCAAGCGCGGGCCCAGGGAGCCGGGGCAGCACCGCCGTGGGAGCATGgtaggagtgcggcccagggagccggggcagcagccgccatgggagcatgg Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaaaccaccatgttctttgtttggttttacttgaagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACCAGTGCAAGCGCGGGCCCAGGGAGCCGGGGCAGCACCGCCGTGGGAGCATGgtaggagtgcggcccagggagccggggcagcagccgccatgggagcatgg Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaaaccaccatgttctttgtttggttttacttgaagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACCAGTGCAAGCGCGGGCCCAGGGAGCCGGGGCAGCACCGCCGTGGGAGCATGgtaggagtgcggcccagggagccggggcagcagccgccatgggagcatgg #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCA-GTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACag ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCACGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTC-TGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATaggtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCA-GTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAAT------CCTGATCCTGATGGCTCTCAGAACag ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCACGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGT-CTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATaggtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGT----CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAAT------CCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTcCACGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCT-GCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTC---CA-GTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCACGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTC-TGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTGGTCC----AGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCC------AATCCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCACGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTC-TGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGT----CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGT--CGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCC------AATCCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCACGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCT---GCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCACGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCC-ACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGG-GTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTC-CCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGG-GGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTC-CCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCcCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGG-TCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCC-ACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACT-GGGGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTT-CCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGG-GTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTC-CCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGG--GAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGG---TCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCC-ACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGG-TCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAG-CGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagggccatatacaggtggaggttgtctattaagactttggtgtttctagATCATTGAAAAGGAGCTGGCCACAACTGACAGAGTGTCAGGAGCCATCCATCTATA-CCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGCACACAGGTCAAGATCCGGgtgagtgtcttactgtcatgtaccagctagagtgtgtcccttgtatgctc Alignment from CESAR GTCATTGAGAAGGAGCGG-CCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagggccatatacaggtggaggttgtctattaagactttggtgtttctagATCATTGAAAAGGAGCTGGCCACAACTGACAGAGTGTCAGGAGCCATCCATCTATA-CCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGCACACAGGTCAAGATCCGGgtgagtgtcttactgtcatgtaccagctagagtgtgtcccttgtatgctc Alignment from Spaln_aa2Genome GTCATTGAGAAGGAG-CGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagggccatatacaggtggaggttgtctattaagactttggtgtttctagATCATTGAAAAGGAGcTGGCCACAACTGACAGAGTGTCAGGAGCCATCCATCTATAC-CCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGCACACAGGTCAAGATCCGGgtgagtgtcttactgtcatgtaccagctagagtgtgtcccttgtatgctc Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGC-GGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagggccatatacaggtggaggttgtctattaagactttggtgtttctagATCATTGAAAAGGAGCTGGCCACAACTGACAGAGTGTCAGGAGCCATCCATCTATA-CCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGCACACAGGTCAAGATCCGGgtgagtgtcttactgtcatgtaccagctagagtgtgtcccttgtatgctc Alignment from Pairagon GTCATTGAGAAGGAGC-GGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagggccatatacaggtggaggttgtctattaagactttggtgtttctagATCATTGAAAAGGAGCTGGCCACAACTGACAGAGTGTCAGGAGCCATCCATCTATA-CCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGCACACAGGTCAAGATCCGGgtgagtgtcttactgtcatgtaccagctagagtgtgtcccttgtatgctc Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGG-CCACAGCTGACAGAGTGTGAGGAGCCATCCATC--TATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagggccatatacaggtggaggttgtctattaagactttggtgtttctagATCATTGAAAAGGAGCTGGCCACAACTGACAGAGTGTCAGGAGCCATCCATCTATAC---CCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGCACACAGGTCAAGATCCGGgtgagtgtcttactgtcatgtaccagctagagtgtgtcccttgtatgctc Alignment from Exonerate_coding2genome GTCATTGAGAAGGAGCGG-CCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagggccatatacaggtggaggttgtctattaagactttggtgtttctagATCATTGAAAAGGAGCTGGCCACAACTGACAGAGTGTCAGGAGCCATCCATCTATACC-CTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGCACACAGGTCAAGATCCGGgtgagtgtcttactgtcatgtaccagctagagtgtgtcccttgtatgctc Alignment from GeneWise -CGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagggccatatacaggtggaggttgtctattaagactttggtgtttctagatcattgaaaaggagCTGGCCACAACTGACAGAGTGTCAGGAGCCATCCATCTATAC-CCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGCACACAGGTCAAGATCCGGgtgagtgtcttactgtcatgtaccagctagagtgtgtcccttgtatgctc #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCAT-GGATGTAGTCACACTCACTGGAGAAGAGgtactctgtgctgtttttctcacagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCC-CAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCCAGGTGCTCAATGGCCATTTCATGTATGGAC-CATGGATGTAGTCACACTCACTGGAGAAGAGgtcttggtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATGGATGTAGTCACACTCACTGGAGAAGAGGTACTCTGTGCTGTTTTTCTCACAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCC-CAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATG-GATGTAGTCACACTCACTGGAGAAGAGGTACTCTGTGCTGTTTTTCTCACAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCA-TGGATGTAGTCACACTCACTGGAGAAGAGGTACTCTGTGCTGTTTTTCTCACAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGA tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATGGATGTAGTCACACTCACTGGAgaagaggtactctgtgctgtttttctcacag------GTTGATGTCTATGTCATGA Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAG AGAAGGTGGATGTCTACGTCATGAC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCA-TGGATGTAGTCACACTCACTGGAGaagaggtactctgtgctgtttttctcacag-----GTTGATGTCTATGTCATGAC Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATGGATGTAGTCACACTCACTGGAGAAGAGgtactctgtgctgtttttctcacagGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATG-ACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTCACACTCACTGGAGAAGAGgtatgagtaattgcaatttaactagGTTGATGTCTATGTCATGCACACAGCCTCTGTCAGGCAAGTGGATCCACT-TGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATG-ACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTCACACTCACTGGAGAAGAGgtcttggtaattgcaatttaactagGTTGATGTCTATGTCATGCACACAGCCTCTGTCAGGCAAGTGGATCC-ACTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Spaln_aa2Genome GGTGGATGTCTACGTCATGACACAG CCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG ----------------------GAGgtatgagtaattgcaatttaactaggttgatgtctatgtcatgcacacagCCTCTGTCAGGCAAGTGGATCCACTT-GGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA--------GA-----------------AGGTGGATGTCTACGTCATG-ACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTATGAGTAATTGCAATTTAACTAGGTTGATGTCTATGTCATGCACACAGCCTCTGTCAGGCAAGTGGATCCAC-TTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATG-ACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTATGAGTAATTGCAATTTAACTAGGTTGATGTCTATGTCATGCACACAGCCTCTGTCAGGCAAGTGGATCCAC-TTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAGGTG TGTAGTCACACTCACTGGAGAAGAGGTAtgagtaattgcaatttaactaggttgatgtctatgtcatgcacacagcctctgtcaggcaagtggatccacttggcacagaggtcactaacagttctggccgtcttaccttcccagtgtcatcagaacatgcgctgggcattggtgtctaccctgtgcacatggtggtcaggtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Exonerate_coding2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGG TGTAGTCACACTCACTGGAGAAGAGgtatgagtaattgcaatttaactaggttgatGTCTATGTCATGCACAC-----AGCCTCTGTCAGGCAAGTGGATCCACT-TGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAG-gtgaggaagtcagcaagtagctcagctcctgtgaaactggacactacca Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAGGTG--GAT------------GTCTACGTCATG------------ACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTATGAGTAATTGCAATTTAACTAGGTTGATGTCTATGTCATGCACACAGCCTCTGTCAGGCAAGTGGATCCACTT-GGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGC-TGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gacactaccaacttattctgtccacctatttccctttttcttttatgcaggGGTGACCACACATATGCTGAGTGCCTGCCTAACCGTTGTGTCCAGAGGCGCAGAAGCCG-GGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCTCGATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGaggtgagttctgcaggcccacacatcaacctgccatctgtgtggactagagc Alignment from CESAR gGGAGACCACACCTATGCCGAGTGC-TGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gacactaccaacttattctgtccacctatttccctttttcttttatgcaggGGTGACCACACATATGCTGAGTGCCTGCCTAACCGTTGTGTCCAGAGGCGCAGAAGCC-GGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCTCGATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGaggtgagttctgcaggcccacacatcaacctgccatctgtgtggactagagc Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gacactaccaacttattctgtccacctatttccctttttcttttatgcagGGGTGACCACACATATGCTGAGTGCCTGCCTAACCGTTGTGTCCAGAGGCGCAGAAGCCGGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCTCGATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgagttctgcaggcccacacatcaacctgccatctgtgtggactagagc Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGC-TGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gacactaccaacttattctgtccacctatttccctttttcttttatgcagGGGTGACCACACATATGCTGAGTGCCTGCCTAACCGTTGTGTCCAGAGGCGCAGAAGCCG-GGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCTCGATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgagttctgcaggcccacacatcaacctgccatctgtgtggactagagc Alignment from Pairagon GGGAGACCACACCTATGCCGAGTG-CTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gacactaccaacttattctgtccacctatttccctttttcttttatgcagGGGTGACCACACATATGCTGAGTGCCTGCCTAACCGTTGTGTCCAGAGGCGCAGAAGCCG-GGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCTCGATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgagttctgcaggcccacacatcaacctgccatctgtgtggactagagc Alignment from Exonerate_protein2genome gacactaccaacttattctgtccacctatttccctttttcttttatgcaggggtgaccacacatatgctgagtgcctgcctaaccgttgtgtccagaggcgcagaagccgggttttcagcattgatggttctttcactgcgagtgtctcgatcatgggcagtgaccccaaggtacgagctggagcagtagatgtggtgaggtgagttctgcaggcccacacatcaacctgccatctgtgtggactagagc Alignment from Exonerate_coding2genome GTCAGGGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG acactaccaacttattctgtccacctatttccctttttcttttatGC-AGGGGTGACCACACATATGCTGAGTGCCTGCCTAACCGTTGTGTCCAGAGGCGCAGAAGCCGGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCTCGATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgagttctgcaggcccacacatcaacctgccatctgtgtggactagagc Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gacactaccaacttattctgtccacctatttccctttttcttttatgcagGGGTGACCACACATATGCTGAGTGCCTGCCTAACCGTTGTGTCCAGAGGCGCAGAAGCCGGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCTCGATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgagttctgcaggcccacacatcaacctgccatctgtgtggactagagc #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCAC-CGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacaggCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATG-TGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCAC-CGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacaggCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCAT-GTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCAC-CGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCAT-GTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCA-CCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCAT-GTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Exonerate_protein2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCAC-CGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTC--TCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCAT---GTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Exonerate_coding2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCAC-CGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTC--TCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCAT---GTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt #### Pkd2l1_ID8958_10 --> 0 - 0 Original Alignment AACATGTTCCTGGCCATCATCAACGACACA-TACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACACTACTCCGAGGTCAAGGAGGAGCTGGCTGGCC-GAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from CESAR AACATGTTCCTGGCCATCATCAACGACACA-TACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACACTACTCCGAGGTCAAGGAGGAGCTGGCTGGC-CGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Spaln_aa2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACACTACTCCGAGGTCAAGGAGGAGCTGGCTGGCCGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Spaln_nt2Genome AACATGTTCCTGGCCATCATCAACGACACA-TACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACACTACTCCGAGGTCAAGGAGGAGCTGGCTGGCC-GAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Pairagon AACATGTTCCTGGCCATCATCAACGACACA-TACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACACTACTCCGAGGTCAAGGAGGAGCTGGCTGGCC-GAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Exonerate_protein2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACACTACTCCGAGGTCAAGGAGGAGCTGGCTGGCCGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Exonerate_coding2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACACTACTCCGAGGTCAAGGAGGAGCTGGCTGGCCGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from GeneWise AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACACTACTCCGAGGTCAAGGAGGAGCTGGCTGGCCGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATC-CTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagtTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCG-CTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATC-CTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagtTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC-GCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCT-GTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCCTGGGCCCtGTGTACTTTGTCACCTATGTCTTCTTCGC-TTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAAT-CCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCG-CTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAAT-CCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCG-CTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAAT---CCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGA--ATCCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGC-TTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCC-TCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCACTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTG-CATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCC-TCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCACTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTG-CATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCC-TCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCAcTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGC-ATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTC-CTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCACTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGC-TTTGCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTC-CTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCACTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTG-CATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCACTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTC---CTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAG--CTCTCACTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGC-ATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCACTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAG-GGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTA-GGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCcCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGG-GAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCC-TGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAG-GGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACG-CCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAG-GGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAA tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTA-GGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAATTCAAGA-GCTAAGGGAATTGAAAGAAaggttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from CESAR GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAATTCAAG-AGCTAAGGGAATTGAAAGAAaggttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Spaln_aa2Genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTcGTCCTGGATACACACACAACCCAATTCAAGAG-CTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Spaln_nt2Genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAATTCAAGA-GCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Pairagon GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAATTCAAGA-GCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAATTCAAGAGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Exonerate_coding2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTCGTCCTGGATACACACACAACCCAATTCAAGAGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from GeneWise TCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGC gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgataggctcatcagtgggtcaaggaagttcgtcctggatacacacacaacccaattcaagagctaagggaattgaaagAAAGGTTGGTACAGATAGAAGGTCAGTGGGACTCCCTTTACCCAATGTCTGAGT #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTA-CAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagaGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACCAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATG-GGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTA-CAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagaGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACCAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGAT-GGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACCAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTAC-AGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACCAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATG-GGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTA-CAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACCAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATG-GGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACCAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACCAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACCAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTA-CGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggccccccccaacagccacaccaatttgttggtaccacctctccctatagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCCGCAGCCGACAGGATCAAGACCTACGGG-GTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTA-CGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggccccccccaacagccacaccaatttgttggtaccacctctccctatagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCCGCAGCCGACAGGATCAAGACCTACGG-GGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCCGCAGCCGACAGGATCAAGACCTACGGGGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGG-AGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCCGCAGCCGACAGGATCAAGACCTACGGG-GTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGC-TACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCCGCAGCCGACAGGATCAAGACCTACGGG-GTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCCGCAGCCGACAGGATCAAGACCTACGGGGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCCGCAGCCGACAGGATCAAGACCTACGGGGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from GeneWise -CAGCGAGATGATTTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagCCACACCAATTTGTTGGTACCACCTCTCCCTATAGAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCCGCAGCCGACAGGATCAAGACCTACGGGGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGG-CAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCCAGTTCCTATCTCACAAGAAAGTGGGTATCT-TGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from CESAR GTGATTTCGGGG-CAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCCAGTTCCTATCTCACAAGAAAGTGGGTATC-TTGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCCAGTTCCTATCTCACAAGAAAGTGGGTATCTTGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Spaln_nt2Genome GTGATTTCGGGGC-AGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCCAGTTCCTATCTCACAAGAAAGTGGGTATCT-TGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Pairagon GTGATTTCGGGG-CAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCCAGTTCCTATCTCACAAGAAAGTGGGTATCT-TGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCCAGTTCCTATCTCACAAGAAAGTGGGTATCTTGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCCAGTTCCTATCTCACAAGAAAGTGGGTATCTTGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCCAGTTCCTATCTCACAAGAAAGTGGGTATCTTGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCT-AAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg gtacaagatgatgcttcttttttgatgaatcatggctccttctcccacagaTACAACAGACAACAGCTCAGCCGGATTTACACTCAAGGGCAAACAGGTGGACTCTTCAAACT-CATGCCTTACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCCTGggtaaacgagctctagccctagcttagggatttttgccaagtaaagtaatt Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCT-AAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg gtacaagatgatgcttcttttttgatgaatcatggctccttctcccacagaTACAACAGACAACAGCTCAGCCGGATTTACACTCAAGGGCAAACAGGTGGACTCTTCAAAC-TCATGCCTTACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCCTGggtaaacgagctctagccctagcttagggatttttgccaagtaaagtaatt Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtacaagatgatgcttcttttttgatgaatcatggctccttctcccacagATACAACAGACAACAGCTCAGCCGGATTTACACTCAAGGGCAAACAGGTGGACTCTTCAAACTCATGCCTTACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCCTGGgtaaacgagctctagccctagcttagggatttttgccaagtaaagtaatt Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCT-AAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtacaagatgatgcttcttttttgatgaatcatggctccttctcccacagATACAACAGACAACAGCTCAGCCGGATTTACACTCAAGGGCAAACAGGTGGACTCTTCAAACT-CATGCCTTACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCCTGGgtaaacgagctctagccctagcttagggatttttgccaagtaaagtaatt Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCT-AAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtacaagatgatgcttcttttttgatgaatcatggctccttctcccacagATACAACAGACAACAGCTCAGCCGGATTTACACTCAAGGGCAAACAGGTGGACTCTTCAAACT-CATGCCTTACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCCTGGgtaaacgagctctagccctagcttagggatttttgccaagtaaagtaatt Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtacaagatgatgcttcttttttgatgaatcatggctccttctcccacagATACAACAGACAACAGCTCAGCCGGATTTACACTCAAGGGCAAACAGGTGGACTCTTCAAACTCATGCCTTACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCCTGGgtaaacgagctctagccctagcttagggatttttgccaagtaaagtaatt Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtacaagatgatgcttcttttttgatgaatcatggctccttctcccacagATACAACAGACAACAGCTCAGCCGGATTTACACTCAAGGGCAAACAGGTGGACTCTTCAAACTCATGCCTTACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCCTGGgtaaacgagctctagccctagcttagggatttttgccaagtaaagtaatt Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtacaagatgatgcttcttttttgatgaatcatggctccttctcccacagATACAACAGACAACAGCTCAGCCGGATTTACACTCAAGGGCAAACAGGTGGACTCTTCAAACTCATGCCTTACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCCTGGgtaaacgagctctagccctagcttagggatttttgccaagtaaagtaatt #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAGATGTCATCC-TTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagaaAGGAACAAGTGCTTTAGGATGTCATCCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCA-GAGCCCTATGGAGTTCGTGgagtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from CESAR aaAGGAACAAGTGCTTCGAGATGTCATCC-TTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagaaAGGAACAAGTGCTTTAGGATGTCATCCCTTTGTGGAAACCAAAGCAATGGACCAACTGA-CCAGAGCCCTATGGAGTTCGTGgagtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCATCC-TTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCATCCcTTTGTGGAAACCAAAGCAATGGACCAACTGACCAGAGC-CCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATGTCATCC-TTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCATCCCTTTGTGGAAACCAAAGCAATGGACCAACTGACC-AGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATGTCAT-CCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCATCCCTTTGTGGAAACCAAAGCAATGGACCAACTGACC-AGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCATCCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCATCCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCATCCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGT-ATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATG---GGTCATTCTGGTGAAGAATCGGAAGCGACATCGGCCCC-CACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTggtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGTC--ATTCTGGTGAAGAATCGGAAGCGACATCGGCCC-CCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTggtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGTC--ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCC-ACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGTC--ATTCTGGTGAAGAATCGGAAGCGACATCGGCCC-CCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGTC--ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCC-CACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGTCATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCC---ACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGTCATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCC---ACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGTCATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCC---ACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAAC------CAGAAGCAGAGAGACCCG-AGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagaGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCACAGATTG---------------------------TCCTCACAAG-CCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagaGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCACAGATT------GTCCTC---------------------ACAAGCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCACAGATTGTCCTC---------------------ACAAGCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCT---TCTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCC--------ACAGATT------------------GTCCTCACAAGC-CGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCG-AGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCT---TCTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCACAGATT---------------------------GTCCTCACAAGC-CGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Exonerate_protein2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCACAGATTGTCCTCACAAGCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGGTAAATTCCTATAGGCAAAATggcagtgtgggtgggacccacctagccca Alignment from Exonerate_coding2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCACAGATTGTCCTCACAAGCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGGTAAATTCCTATAGGCAAAATggcagtgtgggtgggacccacctagccca Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCACAGATT------GTCCTC---------------------ACAAGCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTG-ATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGCATGACAGTGGTTGCTGGGCCAGATTTAGTAA-TACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTG-ATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGCATGACAGTGGTTGCTGGGCCAGATTTAG-TAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGCATGACAGTGGTTGCTGGGCCAGATTTAGTAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTG-ATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGCATGACAGTGGTTGCTGGGCCAGATTTAGT-AATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTG-ATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGCATGACAGTGGTTGCTGGGCCAGATTTAGT-AATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGCATGACAGTGGTTGCTGGGCCAGATTTAGTAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Exonerate_coding2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGCATGACAGTGGTTGCTGGGCCAGATTTAGTAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGCATGACAGTGGTTGCTGGGCCAGATTTAGTAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGCGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATG-TCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from CESAR GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGCGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATG-TCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Spaln_aa2Genome GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGcGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGT-CGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Spaln_nt2Genome GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGCGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATG-TCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Pairagon GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGCGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATG-TCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Exonerate_protein2genome GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGCGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGTCGCCTGCCCAAAGtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Exonerate_coding2genome GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGCGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGTCGCCTGCCCAAAGtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from GeneWise aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctaggaggtggacacactgcgatatcagctccatcagagacacaagaacaggtcgttatgtcgcctgcccaaagtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCT-GGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa atgattgcccccatgtgcctcctaagtagtttggtatcttgttcctaaaggtTGGTGGTACCAGGTAACCGTCACCCTCTCTCGGACAGAAGGTGACCGGGCATATCCTAGTTTCATTGTTTGGAA-TGGACGTAACTCTAAGCAGTATGAAGTTTTCaagtaaggaaaaatagaaaacatcacacagctctttttatctctaagtgtgt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCT-GGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa atgattgcccccatgtgcctcctaagtagtttggtatcttgttcctaaaggtTGGTGGTACCAGGTAACCGTCACCCTCTCTCGGACAGAAGGTGACCGGGCATATCCTAGTTTCATTGTTTG-GAATGGACGTAACTCTAAGCAGTATGAAGTTTTCaagtaaggaaaaatagaaaacatcacacagctctttttatctctaagtgtgt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCT-GGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA atgattgcccccatgtgcctcctaagtagtttggtatcttgttcctaaagGTTGGTGGTACCAGGTAACCGTCACCCTCTCTcGGACAGAAGGTGACCGGGCATATCCTAGTTTCATTGTTTGG-AATGGACGTAACTCTAAGCAGTATGAAGTTTTCAAgtaaggaaaaatagaaaacatcacacagctctttttatctctaagtgtgt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCT-GGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA atgattgcccccatgtgcctcctaagtagtttggtatcttgttcctaaagGTTGGTGGTACCAGGTAACCGTCACCCTCTCTCGGACAGAAGGTGACCGGGCATATCCTAGTTTCATTG-TTTGGAATGGACGTAACTCTAAGCAGTATGAAGTTTTCAAgtaaggaaaaatagaaaacatcacacagctctttttatctctaagtgtgt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCT-GGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA atgattgcccccatgtgcctcctaagtagtttggtatcttgttcctaaagGTTGGTGGTACCAGGTAACCGTCACCCTCTCTCGGACAGAAGGTGACCGGGCATATCCTAGTTTCATTGTTTGG-AATGGACGTAACTCTAAGCAGTATGAAGTTTTCAAgtaaggaaaaatagaaaacatcacacagctctttttatctctaagtgtgt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCT-GGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTT--GGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA atgattgcccccatgtgcctcctaagtagtttggtatcttgttcctaaagGTTGGTGGTACCAGGTAACCGTCACCCTCTCTCGGACAGAAGGTGACCGGGCATATCCTAGTTTCATTGTTTGG---AATGGACGTAACTCTAAGCAGTATGAAGTTTTCAAgtaaggaaaaatagaaaacatcacacagctctttttatctctaagtgtgt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCT-GGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTT--GGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA atgattgcccccatgtgcctcctaagtagtttggtatcttgttcctaaagGTTGGTGGTACCAGGTAACCGTCACCCTCTCTCGGACAGAAGGTGACCGGGCATATCCTAGTTTCATTGTTTGG---AATGGACGTAACTCTAAGCAGTATGAAGTTTTCAAgtaaggaaaaatagaaaacatcacacagctctttttatctctaagtgtgt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTG-TCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA atgattgcccccatgtgcctcctaagtagtttggtatcttgttcctaaagGTTGGTGGTACCAGGTAACCGTCACCCTCTCTCGGACAGAAGGTGACCGGGCATATCCTAGTTTCATTGTTTGG-AATGGACGTAACTCTAAGCAGTATGAAGTTTTCAAgtaaggaaaaatagaaaacatcacacagctctttttatctctaagtgtgt #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCA-GAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcaggtATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGT-TCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from CESAR gtATCACAAGGCTG---CAGCGCTGGAGTCGGGCA-GAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcaggtATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTTCC-AGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Spaln_aa2Genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTTCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Spaln_nt2Genome GTATCACAAGGCTGC---AGCGCTGGAGTCGGGCA-GAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTTCC-AGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCA-GAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTTCC-AGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Exonerate_protein2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTTCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Exonerate_coding2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTTCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from GeneWise GTATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCACGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTTCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCC-CGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcacgttcctttgttttgttttgttttttagtgCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAATCTCCGGGAGATTTTCCTAAGCCAGCCCATTC-TCTGGAACTTGAAGCACCGCTCAAGATCTGTggtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCC-CGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcacgttcctttgttttgttttgttttttagtgCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAATCTCCGGGAGATTTTCCTAAGCCAGCCCATTC-TCTGGAACTTGAAGCACCGCTCAAGATCTGTggtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAATCTCCGGGAGATTTTCCTAAGCCAGCCCATTCTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATC-CCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAATCTCCGGGAGATTTTCCTAAGCCAGCCCATTCT-CTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATC-CCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAATCTCCGGGAGATTTTCCTAAGCCAGCCCATTC-TCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAATCTCCGGGAGATTTTCCTAAGCCAGCCCATTCTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAATCTCCGGGAGATTTTCCTAAGCCAGCCCATTCTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAATCTCCGGGAGATTTTCCTAAGCCAGCCCATTCTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTT-GAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt cacccagtttacttaatatacttccttatctgcctttctcccttggacaggtGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTCGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCT-CCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTT-GAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt cacccagtttacttaatatacttccttatctgcctttctcccttggacaggtGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTCGAATATGGTGGCTTCCCACCAGAGAGCAACTACC-TCTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTCGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTT-GAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTCGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTC-TCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTT-GAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTCGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTC-TCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTCGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTCGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTCGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCA-CAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCCAGTCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCC-GCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from CESAR GTGCCTACTCCAGCC-CCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCCAGTCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCC-CGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Spaln_aa2Genome ACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcaggttcctacctcag------CCCCCCCAGTCTGCCAGCATGAGCCACAGATCCTACCG-CCCCCCCCGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCAC-AGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCCAGTCTGCCAGCATGAGCCACAGATCCTACC-GCCCCCCCCGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Pairagon GTGCCTACTCCAG-CCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCCAGTCTGCCAGCATGAGCCACAGATCCTACC-GCCCCCCCCGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCCAGTCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCCAGTCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCCAGTCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACA-ATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagatCTCTTGCTCAAGAAAACACATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAA-GAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from CESAR atCTCTTGCTTAAGAAGACA-ATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagatCTCTTGCTCAAGAAAACACATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTA-CAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACACATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACA-ATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACACATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACA-AGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Pairagon ATCTCTTGCTTAAGAAGACA-ATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACACATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTA-CAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACACATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Exonerate_coding2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACACATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACACATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGG-TTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAG-GCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from CESAR ACCCACCTGCCTGGGTTT-GTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGA-GGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Spaln_aa2Genome ACCCACCTGCCTGGG-TTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCcTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGG-CAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTG-TGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAG-GCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Pairagon ACCCACCTGCCTGGGTTT-GTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAG-GCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTC-CTCAGAGGGGCAGCTCATTGACATCAAAggtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCT-CCTCAGAGGGGCAGCTCATTGACATCAAAggtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGcTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCC-TCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTC-CTCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTC-CTCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Exonerate_protein2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAG-TACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCT--CTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCC---TCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Exonerate_coding2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTA---CATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAG--CTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCC-TCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAG-AAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG atagcttttctcctgtatacaccctaaaaaaattTCCTATGTTTTA---GTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGCTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCC-TCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagtgGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGG-CTTGCAAGATGAGTGGgtgagtccaatccgttcttgtcttgtttgctagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagtgGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGG-CTTGCAAGATGAGTGGgtgagtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTcCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGC-TTGCAAGATGAGTGGgtgagtccaatccgttcttgtcttgtttgctagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTG-AAGGCTTGCAAGATGAGTGGgtgagtccaatccgttcttgtcttgtttgctagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTG-AAGGCTTGCAAGATGAGTGGgtgagtccaatccgttcttgtcttgtttgctagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCTTGCAAGATGAGTGGgtgagtccaatccgttcttgtcttgtttgctagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCTTGCAAGATGAGTGGgtgagtccaatccgttcttgtcttgtttgctagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCTTGCAAGATGAGTGGgtgagtccaatccgttcttgtcttgtttgctagGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCAT-GCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATCGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcattgtaaagtccctatcagctgccaggtctccccac Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCAT-GCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATCGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcattgtaaagtccctatcaacctcctttcccattccc Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCAT-GCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATcGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCG-CTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatcagctgccaggtctccccac Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCAT-GCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATCGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatcagctgccaggtctccccac Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCAT-GCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATCGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTC-GCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatcagctgccaggtctccccac Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCAT-GCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGG--CTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATCGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGCTC---ACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatcagctgccaggtctccccac Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGC---TCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCAT--CGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGC-TCGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatcagctgccaggtctccccac Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCAT-GCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGGTAAGACCAATCTGTCTCTTGATGCCTCTGCAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATCGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGCTC-ACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatcagctgccaggtctccccac #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG gagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagccCTGGCCACTCTAAAACCACCAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAA-CTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from CESAR ctCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagccCTGGCCACTCTAAAACCACCAAGCTGGCCTTATTGTACCTCAAGCTGTGC-CAACTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAG gagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCAcCAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAACTCACCACCCAGTgtagtggtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCAC-AGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG gagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACCAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAA-CTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Pairagon CTCTGGCTACTCTGAAACCA-CAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG gagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACCAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAA-CTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG gagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACCAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAACTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG gagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACCAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAACTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from GeneWise CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG gagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACCAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAACTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ctgggaggcaattaggcatgaacaggtcatatcatttccttctgtcacagGGTCTACACAGTGCTCAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACA-TAACAAGATTCTCACTggtaagtgtaggcctgactaaaacaattataatgaactatgggccctgcat Alignment from CESAR GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ctgggaggcaattaggcatgaacaggtcatatcatttccttctgtcacagGGTCTACACAGTGCTCAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGAC-ATAACAAGATTCTCACTggtaagtgtaggcctgactaaaacaattataatgaactatgggccctgcat Alignment from Spaln_aa2Genome GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATT---CTCACTG ctgggaggcaattaggcatgaacaggtcatatcatttccttctgtcacagGGTCTACACAGTGCTcAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACATAACAAGATTCTCACTGGTAAgtgtaggcctgactaaaacaattataatgaactatgggccctgcat Alignment from Spaln_nt2Genome GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcaattaggcatgaacaggtcatatcatttccttctgtcacagGGTCTACACAGTGCTCAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACA-TAACAAGATTCTCACTGgtaagtgtaggcctgactaaaacaattataatgaactatgggccctgcat Alignment from Pairagon GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcaattaggcatgaacaggtcatatcatttccttctgtcacagGGTCTACACAGTGCTCAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACA-TAACAAGATTCTCACTGgtaagtgtaggcctgactaaaacaattataatgaactatgggccctgcat Alignment from Exonerate_protein2genome GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACT ctgggaggcaattaggcatgaacaggtcatatcatttccttctgtcacagGGTCTACACAGTGCTCAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACATAACAAGATTCTCACTGgtaagtgtaggcctgactaaaacaattataatgaactatgggccctgcat Alignment from Exonerate_coding2genome GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACT ctgggaggcaattaggcatgaacaggtcatatcatttccttctgtcacagGGTCTACACAGTGCTCAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACATAACAAGATTCTCACTGgtaagtgtaggcctgactaaaacaattataatgaactatgggccctgcat Alignment from GeneWise GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATT---CTCACTG ctgggaggcaattaggcatgaacaggtcatatcatttccttctgtcacagGGTCTACACAGTGCTCAGTATTCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACATAACAAGATTCTCACTGGTAAgtgtaggcctgactaaaacaattataatgaactatgggccctgcat #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagccCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAA-TAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagccCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAA-TAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCACCCTcGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAAT-AAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCA-CCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAAT-AAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAAT-AAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAG--ATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAAT---AAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGA---TGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCACCCT--CGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAAT-AAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCT-GATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCACCCTCGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAAT-AAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGAT-TCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATCTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGA-CTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGAT-TCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATCTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGA-AGACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATCTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGAT-TCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATCTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAG-ACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGAT-TCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATCTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAG-ACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATCTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATCTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATCTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTG-CAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACCAAAACACCATGGTAAATCTTGCCCTGGGGAATGCCTGTG-TGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTG-CAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACCAAAACACCATGGTAAATCTTGCCCTGGGGAATGCCTGT-GTGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTG-CAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGT ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTAcCAAAACACCATGGTAAATCTTGCCCTGGGGAATGCCTGTgtgaggccacttaccaggtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGC-AGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACCAAAACACCATGGTAAATCTTGCCCTGGGGAATGCCTGTG-TGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTG-CAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACCAAAACACCATGGTAAATCTTGCCCTGGGGAATGCCTGTG-TGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTG-CAGAACACCATGGTGAACCTGGCCTTGGAGAACGCC--TGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACCAAAACACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGT---GAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Exonerate_coding2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTG-CAGAACACCATGGTGAACCTGGCCTTGGAGAACGCC--TGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACCAAAACACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGT---GAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACA-CTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGT ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACCAAAACACCATGGTAAATCTTGCCCTGGGGAATGCCTGTgtgaggccacttaccaggtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAG-GAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGCGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCC-ACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAG-GAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGCGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATC-CACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGCGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAG-GAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGCGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCC-ACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAG-GAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGCGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCC-ACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAG-GAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATC--CGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGCGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCA---CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGA---GTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAG--CGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGCGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAATGACACCCAC-CCCTCTTTG---GCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttacaataatcccctctgcctgcctgtccctcctgctctagGTGGTGATCCAACTCAATGACACACATCCACTCTTTGGCCACCATCCCGGAGCTGATGAGGATTCCAGTAG-CCTTGAACGACTAGACTGGGACAAAgtgaggcttgtcaccatcacccctggaagcacctgttccatgacagggtg Alignment from CESAR GTGGCCATCCAGCTCAATGACACCCACCCC-TCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttacaataatcccctctgcctgcctgtccctcctgctctagGTGGTGATCCAACTCAATGACACACATCCACTCTTTGGCCACCATCCCGGAGCTGATGAGGATTCCAGTA-GCCTTGAACGACTAGACTGGGACAAAgtgaggcttgtcaccatcacccctggaagcacctgttccatgacagggtg Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTG----GCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttacaataatcccctctgcctgcctgtccctcctgctctagGTGGTGATCCAACTCAATGACACACATCCACTCTTTGGCcACCATCCCGGAGCTGATGAGGATTCCAGTAGC-CTTGAACGACTAGACTGGGACAAAgtgaggcttgtcaccatcacccctggaagcacctgttccatgacagggtg Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAATGACACCCACCC-CTCTTTGGCCA---TCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttacaataatcccctctgcctgcctgtccctcctgctctagGTGGTGATCCAACTCAATGACACACATCCACTCTTTGGCCACCATCCCGGAGCTGATGAGGATTCCAGTAG-CCTTGAACGACTAGACTGGGACAAAgtgaggcttgtcaccatcacccctggaagcacctgttccatgacagggtg Alignment from Pairagon GTGGCCATCCAGCTCAATGACACCCACCC-CTCTTTGG---CCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttacaataatcccctctgcctgcctgtccctcctgctctagGTGGTGATCCAACTCAATGACACACATCCACTCTTTGGCCACCATCCCGGAGCTGATGAGGATTCCAGTAG-CCTTGAACGACTAGACTGGGACAAAgtgaggcttgtcaccatcacccctggaagcacctgttccatgacagggtg Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttacaataatcccctctgcctgcctgtccctcctgctctagGTGGTGATCCAACTCAATGACACACATCCACTCTTTGGCCACCATCCCGGAGCTGATGAGGATTCCAGTAGCCTTGAACGACTAGACTGGGACAAAgtgaggcttgtcaccatcacccctggaagcacctgttccatgacagggtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttacaataatcccctctgcctgcctgtccctcctgctctagGTGGTGATCCAACTCAATGACACACATCCACTCTTTGGCCACCATCCCGGAGCTGATGAGGATTCCAGTAGCCTTGAACGACTAGACTGGGACAAAgtgaggcttgtcaccatcacccctggaagcacctgttccatgacagggtg #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCT-GAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTCGAAGCCCTGGAGCGCTGGCCTGTGCATC-CATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCT-GAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTCGAAGCCCTGGAGCGCTGGCCTGTGCAT-CCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTCGAAGCCCTGGAGCGCTGGCCTGTGCATCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCT-GAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTCGAAGCCCTGGAGCGCTGGCCTGTGCATC-CATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCT-GAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTCGAAGCCCTGGAGCGCTGGCCTGTGCATC-CATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTCGAAGCCCTGGAGCGCTGGCCTGTGCATCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTCGAAGCCCTGGAGCGCTGGCCTGTGCATCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTCGAAGCCCTGGAGCGCTGGCCTGTGCATCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCT-GTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTCGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTA-TGTTGAGTGTAACAACACCaagtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCT-GTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTCGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCT-ATGTTGAGTGTAACAACACCaagtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCT-GTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTcGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAT-GTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCT-GTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTCGTAGCTTCACAGACATTGCCTGCAGTGAAGGTG-CCTATGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCT-GTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTCGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTA-TGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTCGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTATGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTCGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTATGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTCGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTATGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg #### Rasgrp2_ID1703_2 --> 2 - 2 Original Alignment atGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagatGATTCTGGAAAGGTGCAACGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGT-CATACCTTCCACTCAGCTGGCTTCAAAACTGCTCCACttgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from CESAR atGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagatGATTCTGGAAAGGTGCAACGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGG-TCATACCTTCCACTCAGCTGGCTTCAAAACTGCTCCACttgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Spaln_aa2Genome ATGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAAcGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGTC-ATACCTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Spaln_nt2Genome ATGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGT-CATACCTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Pairagon ATGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGT-CATACCTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Exonerate_protein2genome ATGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGG--TACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGTC---ATACCTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Exonerate_coding2genome ATGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGG--TACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGTC---ATACCTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from GeneWise -GTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagatgattctggaaagGTGCAACGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGTC-ATACCTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACT-CATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCT-TCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACT-CATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATC-TTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACT-CATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGcCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTT-CTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTC-ATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCT-TCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGAC-TCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCT-TCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACT-CATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATC--TCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTT---CTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACT-CATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATC--TCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTT---CTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTG-ACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTT-CTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTG-CAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGT-GCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGC-TCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGG-TGCAGTGCAGAGCATGACT------TGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGC-TCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGT-GCAGTGCAGAGCATGACT------TGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Exonerate_coding2genome aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagggcagtctccgaggtgaaatggcatgggtgtgggcaccttgtgctcctgtcagctctgggaggtgcagtgcagagcatgacttgagcagctttcgagttaaagaaaactttgacaaggctcatgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag #### Rce1_ID576_6 --> 2 - 1 Original Alignment CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtacggctttgttgttttttcctatcacagccCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGA-CATCTTTGTGTCTACAggtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from CESAR CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtgagcctttgttgttttttcctatcacagccCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGG-ACATCTTTGTGTCTACAggtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Spaln_aa2Genome CCCACTCTTTTTTGGA GTCGCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGA---AGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGgttggtacggctttgttgttttttcctatcacagCCCATT---TTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGACATCTTTGTGTCTACAGGTAGgtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Spaln_nt2Genome CTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTCTTTTTTGG----GgttggtacggctttgttgttttttcctatcacagCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGA-CATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Pairagon CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtacggctttgttgttttttcctatcacagCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGA-CATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Exonerate_protein2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtacggctttgttgttttttcctatcacagCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGACATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Exonerate_coding2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtacggctttgttgttttttcctatcacagCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGACATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from GeneWise CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGGTACGGCTTTGTTGTTTTTTCCTATCACAGCCCATTTTCACCACATTATTCGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGACATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACA-GACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagccCCTTGTTCGTGGGCTCGCTGCCTCACACGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAG-GGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTggtgagtctttttcactattttattccatagccCATTTTCACCACATTATT Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACA-GACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagccCCTTGTTCGTGGGCTCGCTGCCTCACACGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACA-GGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTggtgagcctttgttgttttttcctatcacagccCATTTTCACCACATTATT Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGA------------------------------GTCGCCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACACGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGGTGAGTCTTTTTCACTATTTTATTCCATAGCCCATTTTCACCACATTATT Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACA-GACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACACGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAG-GGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGG----GgttggtgagtctttttcactattttattccatagCCCATTTTCACCACATTATT Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACA-GACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACACGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAG-GGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctttttcactattttattccatagCCCATTTTCACCACATTATT Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACA-GACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACA--GAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACACGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGG---GAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctttttcactattttattccatagCCCATTTTCACCACATTATT Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACA-GACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACA--GAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACACGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGG---GAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctttttcactattttattccatagCCCATTTTCACCACATTATT Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACACGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGGTGAGTCTTTTTCACTATTTTATTCCATAGCCCATTTTCACCACATTATT #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAG-GTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAATATTACTACT-TTGGAAGAAGACACGTAGTCAAACTAGCGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from CESAR CTCCCTGACAAG-GTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAATATTACTAC-TTTGGAAGAAGACACGTAGTCAAACTAGCGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Spaln_aa2Genome CAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagctccctgataagC---ATCATTCCCAGCCTGGTGAAATATTACTACTT-TGGAAGAAGACACGTAGTCAAACTAGCGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Spaln_nt2Genome CTCCCTGACAAGG-TGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAATATTACTACT-TTGGAAGAAGACACGTAGTCAAACTAGCGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Pairagon CTCCCTGACAAG-GTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAATATTACTACT-TTGGAAGAAGACACGTAGTCAAACTAGCGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAATATTACTACTTTGGAAGAAGACACGTAGTCAAACTAGCGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAATATTACTACTTTGGAAGAAGACACGTAGTCAAACTAGCGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGCATCATTCCCAGCCTGGTGAAATATTACTACTTTGGAAGAAGACACGTAGTCAAACTAGCGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACG-GAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagaccattctagatctacagtcagatttttttttgctctttcacttagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGCGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCA-AGCCCTAGAAGAAGATGATAAGgtgagagaaaggactactaagtctcaaggaggaggtgagtctctacggaa Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACG-GAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagaccattctagatctacagtcagatttttttttgctctttcacttagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGCGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCC-AAGCCCTAGAAGAAGATGATAAGgtgagagaaaggactactaagtctcaaggaggaggtgagtctctacggaa Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagaccattctagatctacagtcagatttttttttgctctttcacttagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGCGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCAAGCCCTAGAAGAAGATGATAAGgtgagagaaaggactactaagtctcaaggaggaggtgagtctctacggaa Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACG-GAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagaccattctagatctacagtcagatttttttttgctctttcacttagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGCGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCA-AGCCCTAGAAGAAGATGATAAGgtgagagaaaggactactaagtctcaaggaggaggtgagtctctacggaa Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACG-GAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagaccattctagatctacagtcagatttttttttgctctttcacttagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGCGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCA-AGCCCTAGAAGAAGATGATAAGgtgagagaaaggactactaagtctcaaggaggaggtgagtctctacggaa Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagaccattctagatctacagtcagatttttttttgctctttcacttagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGCGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCAAGCCCTAGAAGAAGATGATAAGgtgagagaaaggactactaagtctcaaggaggaggtgagtctctacggaa Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagaccattctagatctacagtcagatttttttttgctctttcacttagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGCGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCAAGCCCTAGAAGAAGATGATAAGgtgagagaaaggactactaagtctcaaggaggaggtgagtctctacggaa Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagaccattctagatctacagtcagatttttttttgctctttcacttagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGCGAAGAGGCCCGGCGAGGGGCTCCTGTATCAGCCAAGCCCTAGAAGAAGATGATAAGgtgagagaaaggactactaagtctcaaggaggaggtgagtctctacggaa #### Rela_ID1129_6 --> 2 - 1 Original Alignment ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTG-ACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagttCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGCACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCC-GACCCCTGTCCTCTCACATCCGATTTTTGATAACcgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from CESAR ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTG-ACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagttCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGCACAGTGCGGGACCCAGCAGGTGGGCCACTCCTC-CGACCCCTGTCCTCTCACATCCGATTTTTGATAACcgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Spaln_aa2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGCACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Spaln_nt2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTG-ACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGCACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCC-GACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Pairagon TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTG-ACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGCACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCC-GACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Exonerate_protein2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGCACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Exonerate_coding2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGCACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from GeneWise TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGCACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtATCTCTTTGGAGGTCTCGCGAACTCATGTTCCAGGACCTCGTACAAC-CATC------TATTGTCGTACCaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from CESAR gtGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtATCTCTTTGGAGGTCTCGCGAACTCATGTTCCAGGACCTCGTACAA-CCATC------TATTGTCGTACCaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Spaln_aa2Genome GTCTCTTTG---GAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGCGAACTCATGTTCCAGGACCTCGTACAACCATC-------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGCGAACTCATGTTCCAGGACCTCGTACAAC-CATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Pairagon GTGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGCGAACTCATGTTCCAGGACCTCGTACAAC-CATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGCGAACTCATGTTCCAGGACCTCGTACAACCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Exonerate_coding2genome tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtatctctttggaggtctcgcgaactcatgttccaggacctcgtacaaccatctattgtcgtaccaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from GeneWise tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtatctctttggaggtctcgcgaactcatgttccaggacctcgtacaaccatctattgtcgtaccaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTC-CCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGG-ACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTggtaggtcctttcaagggtatggtttcgcacaaactcccctaataatcttt Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCG-GTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGG-ACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTggtaggtcctttcaagggtatggtttcgcacaaactcccctaactttatgc Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCG-GTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCCAtGTGCTTCCAGGGACATCTTCCAGCCAAACGGACGA----CTACCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaataatcttt Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGT-CCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGG-ACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaataatcttt Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCG-GTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGG-ACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaataatcttt Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaataatcttt Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGT---GCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCCA--TGTGCTTCCAGGGACATCTTCCAGCCAAACGGACGACTA----CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaataatcttt Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaataatcttt #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTT-CGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCCGACCCATCCTGGCTGCTCGCCTACGGCACCGGC-TTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTT-CGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCCGACCCATCCTGGCTGCTCGCCTACGGCACCGGC-TTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTT-CGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCCGACCCATCCTGGCTGCTCGCCTACGGCACCGGC-TTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTT-CGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCCGACCCATCCTGGCTGCTCGCCTACGGCACCGGC-TTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGAT-GAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcaggaGAAAATGCAGGAGCTGATCGAGTTCCTTCCCCTGCTAAGCCTTGTTTTGGCACAGTGTG-CCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGggttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from CESAR gaGAGAATGCAGGTGCTGAT-GAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcaggaGAAAATGCAGGAGCTGATCGAGTTCCTTCCCCTGCTAAGCCTTGTTTTGGCACAGTGT-GCCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGggttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGAT-GAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATcGAGTTCCTTCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGC-CTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGGgttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGAT-GAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATCGAGTTCCTTCCCCTGCTAAGCCTTGTTTTGGCACAGTGTG-CCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGgtgagggttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Pairagon GAGAGAATGCAGGTGCTGAT-GAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATCGAGTTCCTTCCCCTGCTAAGCCTTGTTTTGGCACAGTGTG-CCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGgtgagggttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGAT-GAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAG--TGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATCGAGTTCCTTCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGC---CTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGGgttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGAT-GAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAG--TGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATCGAGTTCCTTCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGC---CTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGGgttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from GeneWise TTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcaggagaaaatgcaggagctgatcgagTTCCTTCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGC-CTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGGgttagaatccctcattgcttctatagttggacctggtacttgtggataaa #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTG-TGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgcatgagggtgtctgatgtacaaagtttattttctttcatccacagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACATTGCTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGC-TAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtaagtagactgaggagcccctttttacctctgacagctgacaattcctc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTG-TGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgcatgagggtgtctgatgtacaaagtttattttctttcatccacagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACATTGCTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTG-CTAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtaagtagactgaggagcccctttttacctctgacagctgacaattcctc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgcatgagggtgtctgatgtacaaagtttattttctttcatccacagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACATTGCTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGCTAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtaagtagactgaggagcccctttttacctctgacagctgacaattcctc Alignment from Spaln_nt2Genome GCTGGAGCGGGA CTTCGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTG-TGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG TTTTGCATGAGGgtgtctgatgtacaaagtttattttctttcatccacag----GACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACATTGCTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGC-TAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtaagtagactgaggagcccctttttacctctgacagctgacaattcctc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTG-TGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgcatgagggtgtctgatgtacaaagtttattttctttcatccacagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACATTGCTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGC-TAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtaagtagactgaggagcccctttttacctctgacagctgacaattcctc Alignment from Exonerate_protein2genome ttttgcatgagggtgtctgatgtacaaagtttattttctttcatccacaggaccgccttatcggggccactggaagcttcagccatttcacattgctggggtctagaaacagtcccaggtccagatgccaaagtgctagggccctaggatggcccaccctagcagcagcagtaagtagactgaggagcccctttttacctctgacagctgacaattcctc Alignment from Exonerate_coding2genome ttttgcatgagggtgtctgatgtacaaagtttattttctttcatccacaggaccgccttatcggggccactggaagcttcagccatttcacattgctggggtctagaaacagtcccaggtccagatgccaaagtgctagggccctaggatggcccaccctagcagcagcagtaagtagactgaggagcccctttttacctctgacagctgacaattcctc Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCCCAGGTCCCTGAGGAC ttttgcatgagggtgtctgatgtacaaagtttattttctttcatccacagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACATTGCTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCCAAAGTGCTAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTA---AGTAGACTGAGGAGCCCCtttttacctctgacagctgacaattc #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGG-TGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagtCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGACTGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCG-AACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGG-TGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagtCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGACTGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCC-GAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGACTGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGG-TGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGACTGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATC-CGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGG-TGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGACTGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGA-ACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGG-TGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCA--GGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGACTGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGA---ACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGG-TGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCA--GGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGACTGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGA---ACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGACTGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgttttctttcaccatcttatatttttaatcaacagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGG-AGATGCTGCTGATGTCCAGgtgagcggatctgttacttaagctggaggagaacacggatataacaagca Alignment from CESAR TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgttttctttcaccatcttatatttttaatcaacagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTT-TGGAGATGCTGCTGATGTCCAGgtgagcggatctgttacttaagctggaggagaacacggatataacaagca Alignment from Spaln_aa2Genome TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgttttctttcaccatcttatatttttaatcaacagTTACTGAAGCGAcAACCCCACTCAGCGAATTGGGGGTGGTTT-GGAGATGCTGCTGATGTCCAGgtgagcggatctgttacttaagctggaggagaacacggatataacaagca Alignment from Spaln_nt2Genome TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgttttctttcaccatcttatatttttaatcaacagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGG-TTTGGAGATGCTGCTGATGTCCAGgtgagcggatctgttacttaagctggaggagaacacggatataacaagca Alignment from Pairagon TTTCTGAAGCGG-AACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgttttctttcaccatcttatatttttaatcaacagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTT-GGAGATGCTGCTGATGTCCAGgtgagcggatctgttacttaagctggaggagaacacggatataacaagca Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgttttctttcaccatcttatatttttaatcaacagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGAGATGCTGCTGATGTCCAGgtgagcggatctgttacttaagctggaggagaacacggatataacaagca Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgttttctttcaccatcttatatttttaatcaacagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGAGATGCTGCTGATGTCCAGgtgagcggatctgttacttaagctggaggagaacacggatataacaagca Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgttttctttcaccatcttatatttttaatcaacagTTACTGAAGCGACAACCCCACTCAGCGAATTGGGGGTGGTTTGGAGATGCTGCTGATGTCCAGgtgagcggatctgttacttaagctggaggagaacacggatataacaagca #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactaagccctgcctacaccacaaccgggctggcttttcccattgcagcTTCTACCTGGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGGG-CCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtgatcagaatgtgtgcatgcatgggtgttaagccttcggtcttgctagt Alignment from CESAR cTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactaagccctgcctacaccacaaccgggctggcttttcccattgcagcTTCTACCTGGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGCC-GCAAGCCTGAAAACATCATGCTCACCAGCCAGggtgatcagaatgtgtgcatgcatgggtgttaagccttcggtcttgctagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactaagccctgcctacaccacaaccgggctggcttttcccattgcagCTTCTACCTGGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGCCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtgatcagaatgtgtgcatgcatgggtgttaagccttcggtcttgctagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACAC-TAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactaagccctgcctacaccacaaccgggctggcttttcccattgcagCTTCTACCTGGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGC-CGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtgatcagaatgtgtgcatgcatgggtgttaagccttcggtcttgctagt Alignment from Pairagon CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactaagccctgcctacaccacaaccgggctggcttttcccattgcagCTTCTACCTGGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGGG-CCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtgatcagaatgtgtgcatgcatgggtgttaagccttcggtcttgctagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTC--AAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactaagccctgcctacaccacaaccgggctggcttttcccattgcagCTTCTACCTGGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGG---GCCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtgatcagaatgtgtgcatgcatgggtgttaagccttcggtcttgctagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTC--AAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactaagccctgcctacaccacaaccgggctggcttttcccattgcagCTTCTACCTGGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGG---GCCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtgatcagaatgtgtgcatgcatgggtgttaagccttcggtcttgctagt Alignment from GeneWise CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactaagccctgcctacaccacaaccgggctggcttttcccattgcagCTTCTACCTGGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGC-CGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtgatcagaatgtgtgcatgcatgggtgttaagccttcggtcttgctagt #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAG-GAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctggggttagatagccttattgtttgacttaacttttttcttttccagcATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGCGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGG-GCAACAGAGGAGCCGGGCGTGG---AAGGATGGTGGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGggtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAG-GAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctggggttagatagccttattgtttgacttaacttttttcttttccagcATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGCGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTG-GGCAACAGAGGAGCCGGGCGTGG---AAGGATGGTGGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGggtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGCGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGGCAACAGAGGAGCCGGGCGTGG---AAGGATGGTGGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAG-GAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGCGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGG-GCAACAGAGGAGCCGGGCGTG---GAAGGATGGTGGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAG-GAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGCGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGG-GCAACAGAGGAGCCGGGCGTG---GAAGGATGGTGGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGCGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGGCAACAGAGGAGCCGGGCGTGG---AAGGATGGTGGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGCGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGGCAACAGAGGAGCCGGGCGTGG---AAGGATGGTGGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGCGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGGCAACAGAGGAGCCGGGCGTGG---AAGGATGGTGGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga #### Rrp12_ID8296_27 --> 1 - 2 Original Alignment aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATC-AGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gatgaggggttcttggtaacgtcaagactataccttttccatctccacaggTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATACAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTC-GGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACaggtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from CESAR aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATC-AGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gatgaggggttcttggtaacgtcaagactataccttttccatctccacaggTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATACAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGT-CGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACaggtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Spaln_aa2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATACAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Spaln_nt2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACAT-CAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATACAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTC-GGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Pairagon ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACAT-CAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATACAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTC-GGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Exonerate_protein2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATACAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Exonerate_coding2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATACAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from GeneWise ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATACAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAG-AAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGCAAGGCCCAAAAGACACCTCATATTGTACTCAGTG-CAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAG-AAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGCAAGGCCCAAAAGACACCTCATATTGTACTCAGT-GCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGCAAGGCCCAAAAGACACCTCATATTGTACTCAGTGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAG-AAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGCAAGGCCCAAAAGACACCTCATATTGTACTCAGT-GCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAG-AAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGCAAGGCCCAAAAGACACCTCATATTGTACTCAGT-GCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGCAAGGCCCAAAAGACACCTCATATTGTACTCAGTGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGCAAGGCCCAAAAGACACCTCATATTGTACTCAGTGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGCAAGGCCCAAAAGACACCTCATATTGTACTCAGTGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCAC-CGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCCGCTTCCATGGAAAGGGCTCAGGCAAGATGA-GACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from CESAR GCATTCCGGCAGCTGTCCCAC-CGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCCGCTTCCATGGAAAGGGCTCAGGCAAGATGA-GACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCCGCTTCCATGGAAAGGGCTCAGGCAAGATGAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACC-GCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCCGCTTCCATGGAAAGGGCTCAGGCAAGATG-AGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Pairagon GCATTCCGGCAGCTGTCCCA-CCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCCGCTTCCATGGAAAGGGCTCAGGCAAGATG-AGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCCGCTTCCATGGAAAGGGCTCAGGCAAGATGAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCCGCTTCCATGGAAAGGGCTCAGGCAAGATGAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCCGCTTCCATGGAAAGGGCTCAGGCAAGATGAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGAT-GAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATCGAGGAGCCCATCGTGAACCGAGGGCTAGCTG-TGCCCTGCTCCTATGTCAGAACAGAggtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGAT-GAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATCGAGGAGCCCATCGTGAACCGAGGGCTAGCTG-TGCCCTGCTCCTATGTCAGAACAGAggtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATCGAGGAGCCCATCGTGAACCGAGGGCTAGCTGTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGAT-GAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATCGAGGAGCCCATCGTGAACCGAGGGCTAGCTG-TGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGAT-GAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATCGAGGAGCCCATCGTGAACCGAGGGCTAGCTG-TGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATCGAGGAGCCCATCGTGAACCGAGGGCTAGCTGTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATCGAGGAGCCCATCGTGAACCGAGGGCTAGCTGTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATCGAGGAGCCCATCGTGAACCGAGGGCTAGCTGTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGG-GAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGCGAAGAGAACATTGGCTGGAGCACAGTCAACC-GGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGG-GAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGCGAAGAGAACATTGGCTGGAGCACAGTCAAC-CGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGCGAAGAGAACATTGGCTGGAGCACAGTCAACCGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGAT-GGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGCGAAGAGAACATTGGCTGGAGCACAGTCAACCGG-ATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGG-GAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGCGAAGAGAACATTGGCTGGAGCACAGTCAACC-GGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGCGAAGAGAACATTGGCTGGAGCACAGTCAACCGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGCGAAGAGAACATTGGCTGGAGCACAGTCAACCGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGCGAAGAGAACATTGGCTGGAGCACAGTCAACCGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGAC-CCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCCAAAGAGGAAGGGGACATCAGTGTTCAATGCCA-CTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGAC-CCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCCAAAGAGGAAGGGGACATCAGTGTTCAATGCCA-CTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCCAAAGAGGAAGGGGACATCAGTGTTCAATGCCACTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGA-GAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCCAAAGAGGAAGGGGACATCAGTGTTCAATGCCAC-TCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCT-GAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCCAAAGAGGAAGGGGACATCAGTGTTCAATGCCAC-TCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCCAAAGAGGAAGGGGACATCAGTGTTCAATGCCACTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCCAAAGAGGAAGGGGACATCAGTGTTCAATGCCACTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCCAAAGAGGAAGGGGACATCAGTGTTCAATGCCACTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAG-CTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcaggcacaccaccatctgttctgtcccagaaGATGGGGGGGCTCTCCCACCAGGGTCACCGGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTACAAAAGCAGCCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTGC-GCAGCTCAGAGATAGTGGGGAGAAGgtaggtctgagcaaggacattgtcatgaggggactttggcattcttgaga Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAG-CTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcaggcacaccaccatctgttctgtcccagaaGATGGGGGGGCTCTCCCACCAGGGTCACCGGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTACAAAAGCAGCCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTG-CGCAGCTCAGAGATAGTGGGGAGAAGgtaggtctgagcaaggacattgtcatgaggggactttggcattcttgaga Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAG-CTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcaggcacaccaccatctgttctgtcccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCGGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTACAAAAGCAGcCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTGCG-CAGCTCAGAGATAGTGGGGAGAAGgtaggtctgagcaaggacattgtcatgaggggactttggcattcttgaga Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGC-TGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcaggcacaccaccatctgttctgtcccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCGGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTACAAAAGCAGCCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTGC-GCAGCTCAGAGATAGTGGGGAGAAGgtaggtctgagcaaggacattgtcatgaggggactttggcattcttgaga Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAG-CTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcaggcacaccaccatctgttctgtcccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCGGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTACAAAAGCAGCCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTGC-GCAGCTCAGAGATAGTGGGGAGAAGgtaggtctgagcaaggacattgtcatgaggggactttggcattcttgaga Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcaggcacaccaccatctgttctgtcccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCGGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTACAAAAGCAGCCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTGCGCAGCTCAGAGATAGTGGGGAGAAGgtaggtctgagcaaggacattgtcatgaggggactttggcattcttgaga Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcaggcacaccaccatctgttctgtcccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCGGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTACAAAAGCAGCCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTGCGCAGCTCAGAGATAGTGGGGAGAAGgtaggtctgagcaaggacattgtcatgaggggactttggcattcttgaga Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcaggcacaccaccatctgttctgtcccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCGGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTACAAAAGCAGCCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTGCGCAGCTCAGAGATAGTGGGGAGAAGgtaggtctgagcaaggacattgtcatgaggggactttggcattcttgaga #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTA-GAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGCGAAGAAATCCGCACCAAGCTACGACTGCCAG-CCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTA-GAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGCGAAGAAATCCGCACCAAGCTACGACTGCCAG-CCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGCGAAGAAATCCGCACCAAGCTACGACTGCCAGCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTA-GAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGCGAAGAAATCCGCACCAAGCTACGACTGCCAGC-CAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTA-GAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGCGAAGAAATCCGCACCAAGCTACGACTGCCAGC-CAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGCGAAGAAATCCGCACCAAGCTACGACTGCCAGCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGCGAAGAAATCCGCACCAAGCTACGACTGCCAGCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGCGAAGAAATCCGCACCAAGCTACGACTGCCAGCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCC-CGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCCGAGACCTGCAAGGCCTCACTGTGGAACATG-TATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAggtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from CESAR GACCTGTACAGTGCC-CGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCCGAGACCTGCAAGGCCTCACTGTGGAACAT-GTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAggtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Spaln_aa2Genome GACCTGTACAGTGCC-CGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCcCGAGACCTGCAAGGCCTCACTGTGGAACATGT-ATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Spaln_nt2Genome GACCTGTACAGTG-CCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCCGAGACCTGCAAGGCCTCACTGTGGAACATG-TATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Pairagon GACCTGTACAGTG-CCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCCGAGACCTGCAAGGCCTCACTGTGGAACATG-TATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCCGAGACCTGCAAGGCCTCACTGTGGAACATGTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Exonerate_coding2genome GACCTGTACAGTGCC---CGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCCGAGA--CCTGCAAGGCCTCACTGTGGAACATGT-ATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCCGAGACCTGCAAGGCCTCACTGTGGAACATGTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAG-AGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGCAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGT-TGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAG-AGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGCAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAG-TTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGCAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAG-AGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGCAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGT-TGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAG-AGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGCAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGT-TGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGCAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGCAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGCAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGG-AGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGACAGCCCTGGGCCGGACTCACAACAGGCCCTGC-ATCCGAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGG-AGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGACAGCCCTGGGCCGGACTCACAACAGGCCCTG-CATCCGAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGACAGCCCTGGGCCGGACTCACAACAGGCCCTGCATCCGAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGG-AGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGACAGCCCTGGGCCGGACTCACAACAGGCCCTGC-ATCCGAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGG-AGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGACAGCCCTGGGCCGGACTCACAACAGGCCCTGC-ATCCGAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGACAGCCCTGGGCCGGACTCACAACAGGCCCTGCATCCGAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGACAGCCCTGGGCCGGACTCACAACAGGCCCTGCATCCGAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGACAGCCCTGGGCCGGACTCACAACAGGCCCTGCATCCGAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGCTGTGCATTTCGACTG---AACTGGAGAGAGACACTGG-CTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGCTGTGCATTTCGACTG---AACTGGAGAGAGACACTGG-CTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTG---CTGTGCATTTCGACTGAACTGGAGAGAGACACTGGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGCTGTGCATTTCGACT---GAACTGGAGAGAGACACTGG-CTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGCTGTGCATTTCGACT---GAACTGGAGAGAGACACTGG-CTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGCTGTGCATTTCGACTGAACTGGAGAGAGACACT---GGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGCTGTGCATTTCGACTGAACTGGAGAGAGACACT---GGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGCTGTGCATTTCGACTGAACTGGAGAGAGACACT---GGCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa #### Sec31b_ID9038_14 --> 2 - 0 Original Alignment acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTC-GGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagatACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTCGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGG-GGAACGATTTGCAGATGCCGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from CESAR acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTC-GGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagatACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTCGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAG-GGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Spaln_aa2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTCGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Spaln_nt2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGC-TCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTCGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGG-GGAACGATTTGCAGATGCCGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Pairagon ACACTGATGGACTCCTGAGCCAGGCTCTGCTGC-TCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTCGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGG-GGAACGATTTGCAGATGCCGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Exonerate_protein2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTCGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Exonerate_coding2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTCGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from GeneWise ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTCGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGAT-GTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTG-CTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGAT-GTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCT-GCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATG-TTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTG-CTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGAT-GTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTG-CTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTG-CTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagatGCAGAGTTTGTGTTCTCCGTGCCTGGTACGACAGAGCAAGACAAGCACTGTGGGTGGTG-CGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTG-CTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagatGCAGAGTTTGTGTTCTCCGTGCCTGGTACGACAGAGCAAGACAAGCACTGTGGGTGGT-GCGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCCTGGTACGACAGAGCAAGACAAGCACTGTGGGTGGTGCGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTG-CTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCCTGGTACGACAGAGCAAGACAAGCACTGTGGGTGGTG-CGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTG-CTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCCTGGTACGACAGAGCAAGACAAGCACTGTGGGTGGTG-CGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCCTGGTACGACAGAGCAAGACAAGCACTGTGGGTGGTGCGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCCTGGTACGACAGAGCAAGACAAGCACTGTGGGTGGTGCGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCCTGGTACGACAGAGCAAGACAAGCACTGTGGGTGGTGCGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAG-TACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTT---AGCCCTTTTATGGAGCTACCAGGATGGTGCCCGGTGTTGGGGCT-CTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAG-TACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTT---AGCCCTTTTATGGAGCTACCAGGATGGTGCCCGGTGTTGGGGC-TCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGCTACCAGGATGGTGCCCGGTGTTGGGGCTCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAG-TACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTA---GCCCTTTTATGGAGCTACCAGGATGGTGCCCGGTGTT-GGGGCTCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAG-TACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTA---GCCCTTTTATGGAGCTACCAGGATGGTGCCCGGTGTTGGGGCT-CTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGCTACCAGGATGGTGCCCGGTGTTGGGGCTCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTAGC--CCTTTTATGGAGCTACCAGGATGGTGCCCGGTGTTG-GGGCTCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGCTACCAGGATGGTGCCCGGTGTTGGGGCTCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCA-TCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcaagtggaagtacggctgcagagtctccacccttcttcccccacccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCACTCCCAAGACTTGCCATCCCTTGTCCTTG-CTTTGTGAAGCTGCATCCACTGATGGCTCAGCCCGTGGTGCCCACACGTGGGCAGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAggtaattcatactccctctggacagatcggcctccacatcagctaggatac Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCA-TCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcaagtggaagtacggctgcagagtctccacccttcttcccccacccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCACTCCCAAGACTTGCCATCCCTTGTCCTT-GCTTTGTGAAGCTGCATCCACTGATGGCTCAGCCCGTGGTGCCCACACGTGGGCAGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAggtaattcatactccctctggacagatcggcctccacatcagctaggatac Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaagtggaagtacggctgcagagtctccacccttcttcccccacccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCACTCCCAAGACTTGCCATCCCTTGTCCTTGCTTTGTGAAGCTGCATCCACTGATGGCTCAGCCCGTGGTGCCCACACGTGGGCAGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaattcatactccctctggacagatcggcctccacatcagctaggatac Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCA-TCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaagtggaagtacggctgcagagtctccacccttcttcccccacccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCACTCCCAAGACTTGCCATCCCTTGTCCTTG-CTTTGTGAAGCTGCATCCACTGATGGCTCAGCCCGTGGTGCCCACACGTGGGCAGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaattcatactccctctggacagatcggcctccacatcagctaggatac Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCA-TCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaagtggaagtacggctgcagagtctccacccttcttcccccacccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCACTCCCAAGACTTGCCATCCCTTGTCCTTG-CTTTGTGAAGCTGCATCCACTGATGGCTCAGCCCGTGGTGCCCACACGTGGGCAGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaattcatactccctctggacagatcggcctccacatcagctaggatac Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaagtggaagtacggctgcagagtctccacccttcttcccccacccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCACTCCCAAGACTTGCCATCCCTTGTCCTTGCTTTGTGAAGCTGCATCCACTGATGGCTCAGCCCGTGGTGCCCACACGTGGGCAGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaattcatactccctctggacagatcggcctccacatcagctaggatac Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaagtggaagtacggctgcagagtctccacccttcttcccccacccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCACTCCCAAGACTTGCCATCCCTTGTCCTTGCTTTGTGAAGCTGCATCCACTGATGGCTCAGCCCGTGGTGCCCACACGTGGGCAGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaattcatactccctctggacagatcggcctccacatcagctaggatac Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaagtggaagtacggctgcagagtctccacccttcttcccccacccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCACTCCCAAGACTTGCCATCCCTTGTCCTTGCTTTGTGAAGCTGCATCCACTGATGGCTCAGCCCGTGGTGCCCACACGTGGGCAGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaattcatactccctctggacagatcggcctccacatcagctaggatac #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTG-GCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTACGCACGAGACCCCTACTGTGGCTGGGACTCCAGCA-CCATGTGTGCATGGTGGCCACCACTGTAGCCAACaggtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTG-GCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTACGCACGAGACCCCTACTGTGGCTGGGACTCCAGC-ACCATGTGTGCATGGTGGCCACCACTGTAGCCAACaggtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTACGCACGAGACCCCTACTGTGGCTGGGACTCCAGCACCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTG-GCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGA---ATTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTACGCACGAGACCCCTACTGTGGCTGGGACTCCAGCA-CCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTG-GCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAA---TTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTACGCACGAGACCCCTACTGTGGCTGGGACTCCAGCA-CCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTG-GCACGGGACCCCTACTGTGGCTGGGACTCCAGC--ATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTACGCACGAGACCCCTACTGTGGCTGGGACTCCAGCAC---CATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTG-GCACGGGACCCCTACTGTGGCTGGGACTCCAGC--ATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTACGCACGAGACCCCTACTGTGGCTGGGACTCCAGCAC---CATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTACGCACGAGACCCCTACTGTGGCTGGGACTCCAGCACCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAAC-GATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag gccaaactgccaagttttttgataaggtgcccatctctgctctaccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATCGATCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGA-TGGCACTCTAAGGGAAGAAGACACCcggtacgtggaatgttgaagaaaatgcatagaaagtttgagttttattgaag Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAAC-GATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag gccaaactgccaagttttttgataaggtgcccatctctgctctaccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATCGATCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCC-TGATGGCACTCTAAGGGAAGAAGACACCcggtacgtggaatgttgaagaaaatgcatagaaagtttgagttttattgaag Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG gccaaactgccaagttttttgataaggtgcccatctctgctctaccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATCGATCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGATGGCACTCTAAGGGAAGAAGACACCCGgtacgtggaatgttgaagaaaatgcatagaaagtttgagttttattgaag Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAA-CGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG gccaaactgccaagttttttgataaggtgcccatctctgctctaccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATCGATCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTG-ATGGCACTCTAAGGGAAGAAGACACCCGgtacgtggaatgttgaagaaaatgcatagaaagtttgagttttattgaag Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAA-CGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG gccaaactgccaagttttttgataaggtgcccatctctgctctaccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATCGATCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTG-ATGGCACTCTAAGGGAAGAAGACACCCGgtacgtggaatgttgaagaaaatgcatagaaagtttgagttttattgaag Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG gccaaactgccaagttttttgataaggtgcccatctctgctctaccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATCGATCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGATGGCACTCTAAGGGAAGAAGACACCCGgtacgtggaatgttgaagaaaatgcatagaaagtttgagttttattgaag Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG gccaaactgccaagttttttgataaggtgcccatctctgctctaccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATCGATCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGATGGCACTCTAAGGGAAGAAGACACCCGgtacgtggaatgttgaagaaaatgcatagaaagtttgagttttattgaag Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG gccaaactgccaagttttttgataaggtgcccatctctgctctaccatagATCAGAAACATCCTAAAGCAGGGTATTGAAACCCCAGAAGACCAGAATCGATCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGATGGCACTCTAAGGGAAGAAGACACCCGgtacgtggaatgttgaagaaaatgcatagaaagtttgagttttattgaag #### Sf1_ID1667_8 --> 1 - 2 Original Alignment gATCTTAAGGCCCTGGCAG-AGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGag gttttattgaagggggatggggtctctggaactttgtccttgccttctagaATCTTAAGGCCCTGGCAGCAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCA-ATGTGGAGGGGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGaggtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from CESAR gATCTTAAGGCCCTGGCAG-AGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGag gttttattgaagggggatggggtctctggaactttgtccttgccttctagaATCTTAAGGCCCTGGCAGCAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACC-AATGTGGAGGGGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGaggtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Spaln_aa2Genome GATCTTAAGGCCCTGGCAG-AGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGcAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAA-TGTGGAGGGGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Spaln_nt2Genome GATCTTAAGGCCCTGGCAG-AGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGCAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAA-TGTGGAGGGGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Pairagon GATCTTAAGGCCCTGGCAG-AGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGCAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAA-TGTGGAGGGGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Exonerate_protein2genome GATCTTAAGGCCCTGGCAG-AGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACC--AAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGCAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAA---TGTGGAGGGGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Exonerate_coding2genome GATCTTAAGGCCCTGGCAG-AGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACC--AAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGCAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAA---TGTGGAGGGGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from GeneWise GATCTTAAGGCCCTGGCAG-AGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGCAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAA-TGTGGAGGGGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCAT-GGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATCGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTG-CCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCAT-GGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATCGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGCCC-CCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCAT-GGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATcGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGCCCC-CACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCAT-GGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATCGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGC-CCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCAT-GGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATCGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGT-GCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCAT-GGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGT--GGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATCGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGC---CCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGG---CATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCAT--CGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGC-CCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCAT-GGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATCGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGC-CCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTG-GAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGCGACTTGGATCCTATGGCTACAATGCAGAAGT-TGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTG-GAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGCGACTTGGATCCTATGGCTACAATGCAGAAG-TTGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGCGACTTGGATCCTATGGCTACAATGCAGAAGTTGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTG-GAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGG---TGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGCGACTTGGATCCTATGGCTACAATGCAGAAGT-TGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Pairagon GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTG-GAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGCGACTTGGATCCTATGGCTACAATGCAGAAGT-TGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGCGACTTGGATCCTATGGCTACAATGCAGAAGTTGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Exonerate_coding2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGCGACTTGGATCCTATGGCTACAATGCAGAAGTTGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGCGACTTGGATCCTATGGCTACAATGCAGAAGTTGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAA-TCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAACTCCTCAGAGGAGGAGGAAGAGGAGGAGA-TGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAA-TCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAACTCCTCAGAGGAGGAGGAAGAGGAGGAG-ATGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAACTCCTCAGAGGAGGAGGAAGAGGAGGAGATGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAA-TCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAACTCCTCAGAGGAGGAGGAAGAGGAGGAGA-TGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAA-TCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAACTCCTCAGAGGAGGAGGAAGAGGAGGAGA-TGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAACTCCTCAGAGGAGGAGGAAGAGGAGGAGATGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAACTCCTCAGAGGAGGAGGAAGAGGAGGAGATGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAACTCCTCAGAGGAGGAGGAAGAGGAGGAGATGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcggactgcatcacctgatgacacctaatctctctctctttcccccaaagAAGAAGAAGCCAGAAGCCCCCCAAACTGTCACGAAAGAAGTTGCGCCGAATGA-TCGGTTTACTGTGGCAGAGCTGAAGCAGgtaggatctgggaaggtcaagtcagctcctccagttctgctgggcattca Alignment from CESAR GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcggactgcatcacctgatgacacctaatctctctctctttcccccaaagAAGAAGAAGCCAGAAGCCCCCCAAACTGTCACGAAAGAAGTTGCGCCGAA-TGATCGGTTTACTGTGGCAGAGCTGAAGCAGgtaggatctgggaaggtcaagtcagctcctccagttctgctgggcattca Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCC-CCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcggactgcatcacctgatgacacctaatctctctctctttcccccaaagAAGAAGAAGCCAGAAGCCcCCCAAACTGTCACGAAAGAAGTTGCGCCGAAT-GATCGGTTTACTGTGGCAGAGCTGAAGCAGgtaggatctgggaaggtcaagtcagctcctccagttctgctgggcattca Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCT-AAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcggactgcatcacctgatgacacctaatctctctctctttcccccaaagAAGAAGAAGCCAGAAGCCCCCCAAACTGTCACGAAAGAAGTTGCGCCGAATG-ATCGGTTTACTGTGGCAGAGCTGAAGCAGgtaggatctgggaaggtcaagtcagctcctccagttctgctgggcattca Alignment from Pairagon GAAAAGAAGCCGGAAG-CCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcggactgcatcacctgatgacacctaatctctctctctttcccccaaagAAGAAGAAGCCAGAAGCCCCCCAAACTGTCACGAAAGAAGTTGCGCCGAATG-ATCGGTTTACTGTGGCAGAGCTGAAGCAGgtaggatctgggaaggtcaagtcagctcctccagttctgctgggcattca Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcggactgcatcacctgatgacacctaatctctctctctttcccccaaagAAGAAGAAGCCAGAAGCCCCCCAAACTGTCACGAAAGAAGTTGCGCCGAATGATCGGTTTACTGTGGCAGAGCTGAAGCAGgtaggatctgggaaggtcaagtcagctcctccagttctgctgggcattca Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcggactgcatcacctgatgacacctaatctctctctctttcccccaaagAAGAAGAAGCCAGAAGCCCCCCAAACTGTCACGAAAGAAGTTGCGCCGAATGATCGGTTTACTGTGGCAGAGCTGAAGCAGgtaggatctgggaaggtcaagtcagctcctccagttctgctgggcattca Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcggactgcatcacctgatgacacctaatctctctctctttcccccaaagAAGAAGAAGCCAGAAGCCCCCCAAACTGTCACGAAAGAAGTTGCGCCGAATGATCGGTTTACTGTGGCAGAGCTGAAGCAGgtaggatctgggaaggtcaagtcagctcctccagttctgctgggcattca #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGG-GCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGCGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAA-GGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTACGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGG-GCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGCGCAGCCTCATCAGAGAGTTCTGGGGACAGAG-AAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTACGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGCGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTACGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGG-GCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGCGCAGCCTCATCAGAGAGTTCTGGGGACAGAGA-AAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTACGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGG-GCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGCGCAGCCTCATCAGAGAGTTCTGGGGACAGAGA-AAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTACGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGCGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTACGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGCGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTACGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGCGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTACGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGC-CCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCCAAGATCCCTCAGGCTTTGGAAAAGATTC-TCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAG---ggtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCC-AAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCCAAGATCCCTCAGGCTTTGGAAAAGATTC-TCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAG---ggtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCC-AAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttgagtttcagccccttcctctgttctttccttacagAT---TGACCCCTCAGTGGGCCCCCAAGATCCCTCAGGCTTTGGAAAAGATTC-TCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Pairagon ATGGATGATCCTTCTGTGGG-CCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttgagtttcagccccttcctctgttctttccttacagAT---TGACCCCTCAGTGGGCCCCCAAGATCCCTCAGGCTTTGGAAAAGATTC-TCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGC-ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCCATCACACAAGTGGTTATCTCTCGAATCTCAA-GGCAGCCCCTGCTGGCATGagtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from CESAR AGAGCTGCGGCTGTGGGC-ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCCATCACACAAGTGGTTATCTCTCGAATCTCA-AGGCAGCCCCTGCTGGCATGagtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGC---ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCCATCACACAAGTGGTTATCTCTCGAATCTCAAGGCAGCCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGC-ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCCATCACACAAGTGGTTATCTCTCGAATC-TCAAGGCAGCCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Pairagon AGAGCTGCGGCTGTGGG-CATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCC---CTGGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCCATCACACAAGTGGTTATCTCTCGAATC-TCAAGGCAGCCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGC---ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCCATCACACAAGTGGTTATCTCTCGAATCTCAAGGCAGCCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Exonerate_coding2genome AGAGCTGCGGCTGTGGGC---ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCCATCACACAAGTGGTTATCTCTCGAATCTCAAGGCAGCCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from GeneWise cctggacagctgaagcatgatccctggctttcctctccctttcgttccagagagcagcaaccgtgggccatcacacaagtggttatctctcgaatctcaaggcagcccctgctggcatgagtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacaggCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAA-GTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacaggCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGAC-TAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTcGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGC---CACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGT--CGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGC-CTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggCCA---CCTGGGAGCCCTATCAGAAAAGATCTCTCATCTAGAGTCCA-GCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from CESAR gCCAGAACCCGGGAGC-CTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggCCA---CCTGGGAGCCCTATCAGAAAAGATCTCTCATCTAGAGTCC-AGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacAGGCCACCTGGGAGCCCTATCAGAAAAGATCTCTCATCTAGAGTCCAG-CTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCC-TGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCC---ACCTGGGAGCCCTATCAGAAAAGATCTCTCATCTAGAGTCCA-GCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Pairagon GCCAGAACCCGGGAG-CCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCC---ACCTGGGAGCCCTATCAGAAAAGATCTCTCATCTAGAGTCCA-GCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCCTATCAGAAAAGATCTCTCATCTAGAGTCCAGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Exonerate_coding2genome cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggccacctgggagccctatcagaaaagatctctcatctagagtccagctctggaaattgcaagaggactcgcagagggtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCCTATCAGAAAAGATCTCTCATCTAGAGTCCAGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTG-CCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagcTCCCTGTCTGATGAGGTCCCCGTCCTACCCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCA-CACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattataacttctttttccac Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCC-AACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagcTCCCTGTCTGATGAGGTCCCCGTCCTACCCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCACA-CTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattatcagtgcacgtttctt Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattataacttctttttccac Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTG-CCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCC-ACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattataacttctttttccac Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTG-CCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCC-ACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattataacttctttttccac Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattataacttctttttccac Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattataacttctttttccac Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGGTGGGTTGCCAAGTTAACATTGGATGCCATATTATAACTTCTTTTTCCAC #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTC-CAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCA-TCCCCACACCTCATACaggtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTC-CAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGC-ATCCCCACACCTCATACaggtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTC-CAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCcCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCAT-CCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTC-CAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCATCCC-CACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTT-CCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCATCCC-CACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTC-CAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGC--ACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCAT---CCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTC-CAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGC--ACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCAT---CCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCATCCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCG-CTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagaaCATCAGAACTTCTTTGGGCTAGACGAGGCACCTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGG-AAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactatgacagagttcctt Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCG-CTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagaaCATCAGAACTTCTTTGGGCTAGACGAGGCACCTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGG-AAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactctctttctgcctcta Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACCTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactatgacagagttcctt Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGC-TGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACCTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGA-AAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactatgacagagttcctt Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCG-CTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACCTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGA-AAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactatgacagagttcctt Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACCTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactatgacagagttcctt Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACCTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactatgacagagttcctt Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACCTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactatgacagagttcctt #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCA-CCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from CESAR ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGA-CCACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCcCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAC-CCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCC-AAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACC-ACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Pairagon ATGCAGTCCACCTATGTCCT-CCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACC-ACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACC--AACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAC---CCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Exonerate_coding2genome ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACC--AACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAC---CCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat #### Slc15a3_ID3032_7 --> 2 - 1 Original Alignment gtCTGGAGTTCGCTTACTCAGAA-GCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTg cccactgcattctctctggaatacaagtgtggctttggcttctgttttaggaCTTGAGTTTGCTTACTCAGAACGCCCCACGCTACATGCAAGGTGCTATTATGGGTACAT-CTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTggtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from CESAR gtCTGGAGTTCGCTTACTCAGAA-GCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTg cccactgcattctctctggaatacaagtgtggctttggcttctgttttaggaCTTGAGTTTGCTTACTCAGAACGCCCCACGCTACATGCAAGGTGCTATTATGGGT-ACATCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTggtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Spaln_aa2Genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAACGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Spaln_nt2Genome GTCTGGAGTTCGCTTACTCAGAA-GCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAACGCCCCACGCTACATGCAAGGTGCTATTATGGGTA-CATCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Pairagon GTCTGGAGTTCGCTTACTCAGAA-GCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAACGCCCCACGCTACATGCAAGGTGCTATTATGGGTA-CATCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Exonerate_protein2genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAACGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Exonerate_coding2genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAACGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from GeneWise GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAACGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagtgTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCAT-CTGCTCATCTGTGGCTggtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagtgTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCAT-CTGCTCATCTGTGGCTggtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCT---GTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCcTTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCTGCTCATCTGTGGCTGGTGGgcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATC-TGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATG-CCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATC-TGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagcgATGGGGGTCCTTCGCTCGGCTCTGCGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCA-CACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCaggtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagcgATGGGGGTCCTTCGCTCGGCTCTGCGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGC-ACACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCaggtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGcGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCAC-ACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGCGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCA-CACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGCGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCA-CACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGC--ATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGCGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCAC---ACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGC--ATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGCGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCAC---ACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGCGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCAC-ACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAG-GTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcaggTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGCGTCAGCTTTCTGGTGCTCCCTGGACTAT-TGTCCTTTCCAATATACTGGTGCCCCATggtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAG-GTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcaggTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGCGTCAGCTTTCTGGTGCTCCCTGGACTA-TTGTCCTTTCCAATATACTGGTGCCCCATggtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGCGTCAGCTTTCTGGTGCTCCCTGGACTATTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAG-GTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGCGTCAGCTTTCTGGTGCTCCCTGGACTAT-TGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAG-GTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGCGTCAGCTTTCTGGTGCTCCCTGGACTAT-TGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGCGTCAGCTTTCTGGTGCTCCCTGGACTATTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGCGTCAGCTTTCTGGTGCTCCCTGGACTATTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGACCTT---------GGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGCGTCAGCTTTCTGGTGCTCCCTGGACTATTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATG-GAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGCGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCAGTCTTGGCA-TTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from CESAR GTGCTGCGGTCAGCTATG-GAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGCGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCAGTCTTGGC-ATTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Spaln_aa2Genome ATG---GAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcaggtactgtggtcagCTATGCGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCAGTCTTGGCAT-TTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATG-GAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGCGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCAGTCTTGGCA-TTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Pairagon GTGCTGCGGTCAGCTATG-GAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGCGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCAGTCTTGGCA-TTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGCGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCAGTCTTGGCATTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGCGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCAGTCTTGGCATTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGCGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCAGTCTTGGCATTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTC-TACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccaggTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTGCTGCTTTCATGCCCACCTTCCCACTGCCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAG-GGCAGGCATCATGATGAACACAGCCGGTCTCtgtaggtcccattactagtgcgaggttgtaaaggctactgctattatgttc Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTC-TACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccaggTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTGCTGCTTTCATGCCCACCTTCCCACTGCCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCA-GGGCAGGCATCATGATGAACACAGCCGGTCTCtgtaggtcccattactagtgcgaggttgtaaaggctactgctaagtttcat Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTGCTGCTTTCATGCCCACCTTCCCACTGCCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctattatgttc Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCT-CTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTGCTGCTTTCATGCCCACCTTCCCACTGCCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAG-GGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctattatgttc Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCT-CTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTGCTGCTTTCATGCCCACCTTCCCACTGCCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAG-GGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctattatgttc Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTGCTGCTTTCATGCCCACCTTCCCACTGCCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctattatgttc Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTGCTGCTTTCATGCCCACCTTCCCACTGCCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctattatgttc Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTG---GCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTGCTGCTTTCATGCCCACCTTCCCACTGCCA---TTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctattatgttc #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGCGCTCAATCTATCTATATGTCTGGAGTGTTGG-TGGAGCTGCCTTGTTCGGTTGTCTAGCAGACaggtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGCGCTCAATCTATCTATATGTCTGGAGTGTTGG-TGGAGCTGCCTTGTTCGGTTGTCTAGCAGACaggtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGcGCTCAATCTATCTATATGTCTGGAGTGTTGGT-GGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGCGCTCAATCTATCTATATGTCTGGAGTGTTGGT-GGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGCGCTCAATCTATCTATATGTCTGGAGTGTTGGT-GGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGCGCTCAATCTATCTATATGTCTGGAGTGTTGGTGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGCGCTCAATCTATCTATATGTCTGGAGTGTTGGTGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGA---GCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTG---CGCTCAATCTATCTATATGTCTGGAGTGTTGGTGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATC-CTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag tacagtgctcgcaatttcacctgctaagcagtcttgcttgtttcccacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGCTCTCATCATTTTGGAGGCCTTATTCCTGGCAGGATTGGCATTTGCATTTCAAAACTGGC-CCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCaggtgaggacctttgattatcctcagcattttaaaattgtgggataactgtc Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATC-CTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag tacagtgctcgcaatttcacctgctaagcagtcttgcttgtttcccacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGCTCTCATCATTTTGGAGGCCTTATTCCTGGCAGGATTGGCATTTGCATTTCAAAACTGG-CCCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCaggtgaggacctttgattatcctcagcattttaaaattgtgggataactgtc Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacagtgctcgcaatttcacctgctaagcagtcttgcttgtttcccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGCTCTCATCATTTTGGAGGCCTTATTCCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCCCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgaggacctttgattatcctcagcattttaaaattgtgggataactgtc Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTA-TCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacagtgctcgcaatttcacctgctaagcagtcttgcttgtttcccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGCTCTCATCATTTTGGAGGCCTTATTCCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCC-CACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgaggacctttgattatcctcagcattttaaaattgtgggataactgtc Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTA-TCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacagtgctcgcaatttcacctgctaagcagtcttgcttgtttcccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGCTCTCATCATTTTGGAGGCCTTATTCCTGGCAGGATTGGCATTTGCATTTCAAAACTGGC-CCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgaggacctttgattatcctcagcattttaaaattgtgggataactgtc Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacagtgctcgcaatttcacctgctaagcagtcttgcttgtttcccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGCTCTCATCATTTTGGAGGCCTTATTCCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCCCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgaggacctttgattatcctcagcattttaaaattgtgggataactgtc Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacagtgctcgcaatttcacctgctaagcagtcttgcttgtttcccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGCTCTCATCATTTTGGAGGCCTTATTCCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCCCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgaggacctttgattatcctcagcattttaaaattgtgggataactgtc Alignment from GeneWise -------------------------------------------------ATGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG TACAGTGCTCGCAATTTCACCTGCTAAGCAGTCTTGCTTGTTTCCCACAGTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGCTCTCATCATTTTGGAGGCCTTATTCCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCCCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTACTTATACCCACCAGgtgaggacctttgattatcctcagcattttaaaattgtgggataactgtc #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTAC-GGGCGCCATGATGTTTGGTTACCTTGCGGATaggtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTA-CGGGCGCCATGATGTTTGGTTACCTTGCGGATaggtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTACGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTAC-GGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTAC-GGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTACGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Exonerate_coding2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTACGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTACGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCC-CTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtaggTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCCTGCAGAGAGTGGCCTGTATCAATGCAAAAC-AGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCC-CTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtaggTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCCTGCAGAGAGTGGCCTGTATCAATGCAAAAC-AGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCC-CTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCCTGCAGAGAGTGGCCTGTATCAATGCAAAAC-AGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAG-CCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCCTGCAGAGAGTGGCCTGTATCAATGCAAAAC-AGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCA-CTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagagATGGAGATTGTGAGGACAGCACCTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCT-CAGCTGCCTCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCaggtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCA-CTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagagATGGAGATTGTGAGGACAGCACCTGGCTGTATTTGGTATGGGATGCCTGTCCGGCT-CCTCAGCTGCCTCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCaggtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACCTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTCAGCTGCCTCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCAC-TGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACCTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCC-TCAGCTGCCTCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCA-CTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACCTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCC-TCAGCTGCCTCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACCTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTCAGCTGCCTCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACCTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTCAGCTGCCTCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACCTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTCAGCTGCCTCTTCTTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAG-CCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCCGAGCCACACAAACATCTTTATAGCAGGTTGTA-CGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCC-AGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCCGAGCCACACAAACATCTTTATAGCAGGTTGTACGG-GGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCC-AGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCCgAGCCACACAAACATCTTTATAGCAGGTTGTACGGGGGCC------TCCgtcaggtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCC-AGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCCGAGCCACACAAACATCTTTATAGCAGGTTGTAC-GGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCC-AGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCCGAGCCACACAAACATCTTTATAGCAGGTTGTAC-GGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAG-CCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCA ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCCGAGCCACACAAACATCTTTATAGCAGGTTGTACGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAG-CCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCA ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCCGAGCCACACAAACATCTTTATAGCAGGTTGTACGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCCGAGCCACACAAACATCTTTATAGCAGGTTGTACGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATC-ACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCCACACCCTGTGTGGGCATCCTCCTCCCCATTGTAT-TTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATC-ACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCCACACCCTGTGTGGGCATCCTCCTCCCCATTGTA-TTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCAT-CACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCCACACCCTGTGTGGGCATCCTCCTCCCCATTGTAT-TTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCAT-CACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCCACACCCTGTGTGGGCATCCTCCTCCCCATTGTAT-TTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCAT-CACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCCACACCCTGTGTGGGCATCCTCCTCCCCAT-TGTATTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTT-GTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaacggggacttccctgactactcagccctttgccctgtaccctccagATCTGGCTGACAGCACTGTGCCTTCGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTG-TATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtaacagccggggatagtgcacagcatggaacaggggtgccaggggaggt Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTT-GTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaacggggacttccctgactactcagccctttgccctgtaccctccagATCTGGCTGACAGCACTGTGCCTTCGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCT-GTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtaacagccggggatagtgcacagcatggaacaggggtgccaggggaggt Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaacggggacttccctgactactcagccctttgccctgtaccctccagATCTGGCTGACAGCACTGTGCCTTCGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaacagccggggatagtgcacagcatggaacaggggtgccaggggaggt Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTT-GTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaacggggacttccctgactactcagccctttgccctgtaccctccagATCTGGCTGACAGCACTGTGCCTTCGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTG-TATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaacagccggggatagtgcacagcatggaacaggggtgccaggggaggt Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTT-GTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaacggggacttccctgactactcagccctttgccctgtaccctccagATCTGGCTGACAGCACTGTGCCTTCGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTG-TATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaacagccggggatagtgcacagcatggaacaggggtgccaggggaggt Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaacggggacttccctgactactcagccctttgccctgtaccctccagATCTGGCTGACAGCACTGTGCCTTCGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaacagccggggatagtgcacagcatggaacaggggtgccaggggaggt Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaacggggacttccctgactactcagccctttgccctgtaccctccagATCTGGCTGACAGCACTGTGCCTTCGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaacagccggggatagtgcacagcatggaacaggggtgccaggggaggt Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaacggggacttccctgactactcagccctttgccctgtaccctccagATCTGGCTGACAGCACTGTGCCTTCGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtaacagccggggatagtgcacagcatggaacaggggtgccaggggaggt #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccaggtCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGG-CCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccaggtCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGT-TGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTG-CTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTT-GGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTG-CTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTT-GGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATG-GCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGAT-GGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGcCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGGCTT-GGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGC-TCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATG-GCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATG-GCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGAT--GAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGG---CTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG-CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGAT--GAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGG---CTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTG-CTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGG-CTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAAC-ATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccaggACACTGAATAACAATAACCATCAGCACCATTCCTGTGTCAAGTTTCA-TCATATCCCTAAGCTGCGCACTttgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from CESAR gACCCTGAACAACAACAAC-ATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccaggACACTGAATAACAATAACCATCAGCACCATTCCTGTGTCAAGTTTC-ATCATATCCCTAAGCTGCGCACTttgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACCATCAGCACCATTCCTGTGTCAAGTTTCATCATATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Spaln_nt2Genome GACCCTGAACAACAACAAC-ATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACCATCAGCACCATTCCTGTGTCAAGTTTC-ATCATATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Pairagon GACCCTGAACAACAACAA-CATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACCATCAGCACCATTCCTGTGTCAAGTTTC-ATCATATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACCATCAGCACCATTCCTGTGTCAAGTTTCATCATATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Exonerate_coding2genome tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccaggacactgaataacaataaccatcagcaccattcctgtgtcaagtttcatcatatccctaagctgcgcactttgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACCATCAGCACCATTCCTGTGTCAAGTTTCATCATATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAG-TTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAACTTAAAGAAGTACGGCCGTGTGAACAAAA-GGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGATAGC---TATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAG-TTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAACTTAAAGAAGTACGGCCGTGTGAACA-AAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAACTTAAAGAAGTACGGCCGTGTGAACAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAG-TTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAACTTAAAGAAGTACGGCCGTGTGAAC-AAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGATA---GCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAG-TTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAACTTAAAGAAGTACGGCCGTGTGAAC-AAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGATA---GCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAACTTAAAGAAGTACGGCCGTGTGAACAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAACTTAAAGAAGTACGGCCGTGTGAACAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAACTTAAAGAAGTACGGCCGTGTGAACAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAATTGGTACCTGGTG-CAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from CESAR GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAATTGGTACCTGGT-GCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAATTGGTACCTGGTGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAATTGGTACCTGGT-GCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Pairagon GTATCTAAGAACTTCAGT-GAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAATTGGTACCTGGT-GCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAATTGGTACCTGGTGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAATTGGTACCTGGTGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTCGAAGTTTTCCAGAAATTGGTACCTGGTGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac #### Snx15_ID1466_6 --> 2 - 1 Original Alignment tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGAC-AGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgttttcccccctagggtgagtctcaaattgtttggtttttgccaccagtgGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACCAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTC-TCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGggtaagaaaccggagggagtagcagtactaagggctttgaagaacacacac Alignment from CESAR tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGAC-AGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgttttcccccctagggtgagtctcaaattgtttggtttttgccaccagtgGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACCAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAG-GTCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGggtaagaaaccggagggagtagcagtactaagggctttgaagaacacacac Alignment from Spaln_aa2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctagggtgagtctcaaattgtttggtttttgccaccagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACCAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgtaagaaaccggagggagtagcagtactaagggctttgaagaacacacac Alignment from Spaln_nt2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGAC-AGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctagggtgagtctcaaattgtttggtttttgccaccagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACCAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGT-CTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgtaagaaaccggagggagtagcagtactaagggctttgaagaacacacac Alignment from Pairagon TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGA-CAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctagggtgagtctcaaattgtttggtttttgccaccagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACCAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGT-CTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgtaagaaaccggagggagtagcagtactaagggctttgaagaacacacac Alignment from Exonerate_protein2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctagggtgagtctcaaattgtttggtttttgccaccagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACCAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgtaagaaaccggagggagtagcagtactaagggctttgaagaacacacac Alignment from Exonerate_coding2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctagggtgagtctcaaattgtttggtttttgccaccagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACCAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgtaagaaaccggagggagtagcagtactaagggctttgaagaacacacac Alignment from GeneWise TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctagggtgagtctcaaattgtttggtttttgccaccagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACCAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgtaagaaaccggagggagtagcagtactaagggctttgaagaacacacac #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGC-TTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcaggaCGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCCTTCACAGTGCCTATCCCTGCCCTCAACAACAGCCCTCAAG-CAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGC-TTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcaggaCGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCCTTCACAGTGCCTATCCCTGCCCTCAACAACAGCCCTCAA-GCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGC-TTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCcTTCACAGTGCCTATCCCTGCCCTCAACAACAGCCCTCAAGC-AAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCT-TCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCCTTCACAGTGCCTATCCCTGCCCTCAACAACAGCCCTCAA-GCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCG-CTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCCTTCACAGTGCCTATCCCTGCCCTCAACAACAGCCCTCAAG-CAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCCTTCACAGTGCCTATCCCTGCCCTCAACAACAGCCCTCAAGCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCCTTCACAGTGCCTATCCCTGCCCTCAACAACAGCCCTCAAGCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCCTTCACAGTGCCTATCCCTGCCCTCAACAACAGCCCTCAAGCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTC-CACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGC-TCTAGAGGAGTTCCCAGCCTTCCCCCAAGCCCAGGTGTTTggtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTC-CACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGG-CTCTAGAGGAGTTCCCAGCCTTCCCCCAAGCCCAGGTGTTTggtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTC-CACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTcCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCT-CTAGAGGAGTTCCCAGCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGC-TCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCT-CTAGAGGAGTTCCCAGCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGC-TCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGC-TCTAGAGGAGTTCCCAGCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTC-CACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGT--CGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCT---CTAGAGGAGTTCCCAGCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Exonerate_coding2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTC-CACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGT--CGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCT---CTAGAGGAGTTCCCAGCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from GeneWise GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAG-CTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCT-CTAGAGGAGTTCCCAGCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCT-ATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacaggcCTGGCAGACAACTATATTCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAG-GAACCAACTGAAGaggtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from CESAR gcCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacaggcCTGGCAGACAACTATATTCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAA-GGAACCAACTGAAGaggtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATC-CCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTcCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGG-AACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATAT-CCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAG-GAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Pairagon GCCTGGCAGACAACTATA-TCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAG-GAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from GeneWise GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACC-CGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCCGAATTCGGGATACCTGCCAGAGAGCAGACC-TGTGATGCACTCCCACAAAtgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACC-CGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCCGAATTCGGGATACCTGCCAGAGAGCAGAC-CTGTGATGCACTCCCACAAAtgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCCGAATTCGGGATACCTGCCAGAGAGCAGACCTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCC-GAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCCGAATTCGGGATACCTGCCAGAGAGCAGACC-TGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACA-CCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCCGAATTCGGGATACCTGCCAGAGAGCAGACC-TGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCCGAATTCGGGATACCTGCCAGAGAGCAGACCTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCCGAATTCGGGATACCTGCCAGAGAGCAGACCTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCCGAATTCGGGATACCTGCCAGAGAGCAGACCTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCCTGAGAAGCATTGTAAGGTATGCAGACGAAATCCTCA-CACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCCTGAGAAGCATTGTAAGGTATGCAGACGAAATCCTC-ACACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC--GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCcCTGAGAAGCATTGTAAGGTATGCAGACGAAATCCTCACACCGgtGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCC-TGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGG---CATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCCTGAGAAGCATTGTAAGGTATGCAGACGAAATCCTCA-CACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCT-CCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCCTGAGAAGCATTGTAAGGTATGCAGACGAAATCCTCA-CACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC--GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCCTGAGAAGCATTGTAAGGTATGCAGACGAAATCCTCACACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTC-CTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC--GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCCTGAGAAGCATTGTAAGGTATGCAGACGAAATCCTCACACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCCTGAGAAGCATTGTAAGGTATGCAGACGAAATCCTCACACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC-TTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgaggtagtccagtagaaggttacttactttgccttgttttaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTGCAACGCCTGGCAGCCCATCCCACCCTGCGTCGGG-CCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC-TTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgaggtagtccagtagaaggttacttactttgccttgttttaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTGCAACGCCTGGCAGCCCATCCCACCCTGCGTCGG-GCCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC-TTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgaggtagtccagtagaaggttacttactttgccttgttttagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCcTTCCTGCAACGCCTGGCAGCCCATCCCACCCTGCGTCGGGC-CACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGT-CTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgaggtagtccagtagaaggttacttactttgccttgttttagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTGCAACGCCTGGCAGCCCATCCCACCCTGCGTC-GGGCCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGT-CTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgaggtagtccagtagaaggttacttactttgccttgttttagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTGCAACGCCTGGCAGCCCATCCCACCCTGCGTCGGG-CCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC-TTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGG--GACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgaggtagtccagtagaaggttacttactttgccttgttttagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTGCAACGCCTGGCAGCCCATCCCACCCTGCGTCGGGC---CACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGT---CTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgaggtagtccagtagaaggttacttactttgccttgttttagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAA--GTCCTTCCTGCAACGCCTGGCAGCCCATCCCACCCTGCGTCGGGC-CACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAA-GTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaagctatgaggtagtccagtagaaggttacttactttgccttgttttagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTGCAACGCCTGGCAGCCCATCCCACCCTGCGTCGGGC-CACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtaagttgattgattcagcataatgggattaaagacaggctaggggaaat #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCAC-AACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagaTACCCCAATGTCAATGTGCATCAACTTTACCACCAGCTGGAGAGATGGGCTGGCCTTTA-TGCCATTGTGCATAAACACcggtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from CESAR aTACCCCAATGTCAATGTGCAC-AACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagaTACCCCAATGTCAATGTGCATCAACTTTACCACCAGCTGGAGAGATGGGCTGGCCTTT-ATGCCATTGTGCATAAACACcggtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCAC-AACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATcAACTTTACCACCAGCTGGAGAGATGGGCTGGCCTTTAT-GCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCA-CAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATCAACTTTACCACCAGCTGGAGAGATGGGCTGGCCTTTA-TGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Pairagon ATACCCCAATGTCAATGTGCA-CAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATCAACTTTACCACCAGCTGGAGAGATGGGCTGGCCTTT-ATGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCAC-AACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTT--AATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATCAACTTTACCACCAGCTGGAGAGATGGGCTGGCCTTTAT---GCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCAC-AACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTT--AATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATCAACTTTACCACCAGCTGGAGAGATGGGCTGGCCTTTAT---GCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATCAACTTTACCACCAGCTGGAGAGATGGGCTGGCCTTTATGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAG-GAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGCAAAAAACTAGAGCAACTAGCTGCTCGATTTG-CCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAG-CTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGCAAAAAACTAGAGCAACTAGCTGCTCGATTT-GCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGCAAAAAACTAGAGCAACTAGCTGCTCGATTTGCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAG-CTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGCAAAAAACTAGAGCAACTAGCTGCTCGATTTG-CCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAG-GAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGCAAAAAACTAGAGCAACTAGCTGCTCGATTTG-CCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Exonerate_protein2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGCAAAAAACTAGAGCAACTAGCTGCTCGATTTGCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Exonerate_coding2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGCAAAAAACTAGAGCAACTAGCTGCTCGATTTGCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGCAAAAAACTAGAGCAACTAGCTGCTCGATTTGCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag #### Sptbn2_ID622_17 --> 1 - 0 Original Alignment gCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTT-TTAGGACGCCTTCGGGACAACCGAGAG---CAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttataggCACAGGAAGAATCAGGAAGCAGTACAACAGCTTCTTA---CGCCCTCAGGACAACCGCAAGGAGCGGC-GCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from CESAR gCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAG--CACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttataggCACAGGAAGAATCAGGAAGCAGTACAACAGCTTCTT--ACGCCCTCAGGACAACCGCAAGGAGCGGCGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Spaln_aa2Genome GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTCTTACGCCCTCAGGACAACCGCAAGGAGCGGCGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Spaln_nt2Genome GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGC--ACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTCT--TACGCCCTCAGGACAACCGCAAGGAGCGGCGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Pairagon GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCA--GCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTCT--TACGCCCTCAGGACAACCGCAAGGAGCGGCGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Exonerate_protein2genome GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTCTTACGCCCTCAGGACAACCGCAAGGAGCGGCGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Exonerate_coding2genome GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTCTTACGCCCTCAGGACAACCGCAAGGAGCGGCGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from GeneWise GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTCTTACGCCCTCAGGACAACCGCAAGGAGCGGCGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat #### Sptbn2_ID626_21 --> 0 - 0 Original Alignment TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGC-TCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCCTCTCTGGAACATGGGAAGGACTTGCCCA-TGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from CESAR TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGC-TCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCCTCTCTGGAACATGGGAAGGACTTGCCC-ATGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Spaln_aa2Genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGC-TCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCcTCTCTGGAACATGGGAAGGACTTGCCCAT-GTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Spaln_nt2Genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAG-CTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCCTCTCTGGAACATGGGAAGGACTTGCCCA-TGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Pairagon TTGTGGGTGACTGAGCGGCTTCCCATGGCCAG-CTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCCTCTCTGGAACATGGGAAGGACTTGCCCA-TGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Exonerate_protein2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCCTCTCTGGAACATGGGAAGGACTTGCCCATGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Exonerate_coding2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCCTCTCTGGAACATGGGAAGGACTTGCCCATGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from GeneWise TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCCTCTCTGGAACATGGGAAGGACTTGCCCATGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAG-AGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGCAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGT-AGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAG-AGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGCAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAG-TAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGCAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAG-AGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGCAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAG-TAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAG-AGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGCAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAG-TAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGCAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGCAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGCAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCC-TGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGT-ACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCGGCCCcggtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCC-TGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTG-TACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCGGCCCcggtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCC-TGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCcTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTACTT-GATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGG-CCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTG-TACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGG-CCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTG-TACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCC-TGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTG--TTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTA---CTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCC-TGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTG--TTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTA---CTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAG-GCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTA-CTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCA-GGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcccctaacctatgaactctctatatctctctctctttctctctcagttTTGGAGGTGCTTGTATTTGGGAAGGACGCACGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCAC-ATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCGGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgggttgcagtaacccagacgttcccaaccccgtcaccgccattctc Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCA-GGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcccctaacctatgaactctctatatctctctctctttctctctcagttTTGGAGGTGCTTGTATTTGGGAAGGACGCACGGGATGGCAGAGGCCTGGCTGTGCAGCCAG-GCACATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCGGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgggttgcagtaacccagacgttcccaaccccgtcaccgccattctc Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcccctaacctatgaactctctatatctctctctctttctctctcagTTTTGGAGGTGCTTGTATTTGGGAAGGACGCACGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCGGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgggttgcagtaacccagacgttcccaaccccgtcaccgccattctc Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCA-GGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcccctaacctatgaactctctatatctctctctctttctctctcagTTTTGGAGGTGCTTGTATTTGGGAAGGACGCACGGGATGGCAGAGGCCTGGCTGTGCAGCCAGG-CACATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCGGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgggttgcagtaacccagacgttcccaaccccgtcaccgccattctc Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCA-GGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcccctaacctatgaactctctatatctctctctctttctctctcagTTTTGGAGGTGCTTGTATTTGGGAAGGACGCACGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCA-CATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCGGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgggttgcagtaacccagacgttcccaaccccgtcaccgccattctc Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcccctaacctatgaactctctatatctctctctctttctctctcagTTTTGGAGGTGCTTGTATTTGGGAAGGACGCACGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCGGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgggttgcagtaacccagacgttcccaaccccgtcaccgccattctc Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcccctaacctatgaactctctatatctctctctctttctctctcagTTTTGGAGGTGCTTGTATTTGGGAAGGACGCACGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCGGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgggttgcagtaacccagacgttcccaaccccgtcaccgccattctc Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcccctaacctatgaactctctatatctctctctctttctctctcagTTTTGGAGGTGCTTGTATTTGGGAAGGACGCACGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCGGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgggttgcagtaacccagacgttcccaaccccgtcaccgccattctc #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAG-CCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTG-CACTGCTTGGGATgggtgagtattgatatcaaatgctaaagctggtaaatgaccctttacttttt Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAG-CCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCT-GCACTGCTTGGGATgggtgagtattgatatcaaatgctaaagctggtaaatgacccttttcctgcc Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGG-AGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCCAGAGGGgAGTCTGGTGGATGGCCAAAGAGTTCCTGC-ACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctttacttttt Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGC-CAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTG-CACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctttacttttt Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAG-CCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTG-CACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctttacttttt Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGCACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctttacttttt Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGCACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctttacttttt Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGCACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctttacttttt #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGA-GGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGACGGTCCAGAGCTCTCTGCACAGGAACAGATGGAAGGGATGC-GTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACaggtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGA-GGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGACGGTCCAGAGCTCTCTGCACAGGAACAGATGGAAGGGATG-CGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACaggtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGA-GGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAcGGTCCAGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCG-TGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGC---CCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGA-GGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGACGGTCCAGAGCTCTCTGCACAGGAACAGATGGAAGGGATGC-GTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGA-GGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGACGGTCCAGAGCTCTCTGCACAGGAACAGATGGAAGGGATGC-GTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGA-GGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG--CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGACGGTCCAGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCG---TGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGA-GGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG--CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGACGGTCCAGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCG---TGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACA-CGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGACGGTCCAGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCG-TGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTC-CACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagaGCACAGGGCACTCGTGTACTAGTCCCACTGCAAGACAGGTGTCAGTCGATCAG-TGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCaggtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTC-CACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagaGCACAGGGCACTCGTGTACTAGTCCCACTGCAAGACAGGTGTCAGTCGATCA-GTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCaggtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCCACTGCAAGACAGGTGTCAGTCGATCAGTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCC-ACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCCACTGCAAGACAGGTGTCAGTCGATCAG-TGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGT-CCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCCACTGCAAGACAGGTGTCAGTCGATCAG-TGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCCACTGCAAGACAGGTGTCAGTCGATCAGTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCCACTGCAAGACAGGTGTCAGTCGATCAGTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCCACTGCAAGACAGGTGTCAGTCGATCAGTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCG-GCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGCGCACAGCTTCTGCCCCACTGGAAGGAGACACATC-ATTTATTGAGGATGCCaggtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCG-GCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGCGCACAGCTTCTGCCCCACTGGAAGGAGACACAT-CATTTATTGAGGATGCCaggtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCG-GCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGcGCACAGCTTCTGCCCCACTGGAAGGAGACACATCA-TTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCG-GCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGCGCACAGCTTCTGCCCCACTGGAAGGAGACACATC-ATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCG-GCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGCGCACAGCTTCTGCCCCACTGGAAGGAGACACATC-ATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCG-GCACAGCTTCTGCCCCACTGGAAGGAGACACAT--CGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGCGCACAGCTTCTGCCCCACTGGAAGGAGACACATCA---TTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCG-GCACAGCTTCTGCCCCACTGGAAGGAGACACAT--CGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGCGCACAGCTTCTGCCCCACTGGAAGGAGACACATCA---TTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGCGCACAGCTTCTGCCCCACTGGAAGGAGACACATCATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGCATGCTGCTTCTCATGGCCCAGCAAGATCAGA-ATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttagctggaactcttctgttgcagGGCTCTGAATGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGCATGCTGCTTCTCATGGCCCAGCAAGATCAG-AATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGCATGCTGCTTCTCATGGCCCAGCAAGATCAGAATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttagctggaactcttctgttgcagGGCTCTGAATGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGATGTCCTCT------ATACCGTGACTTTATTGACAACCAGCATGCTGCTTCTCATGGCCCAGCAAGATC-AGAATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttagctggaactcttctgttgcagGGCTCTGAATGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGATGTCCTCT------ATACCGTGACTTTATTGACAACCAGCATGCTGCTTCTCATGGCCCAGCAAGATCAGA-ATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttagctggaactcttctgttgcagGGCTCTGAATGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGCATGCTGCTTCTCATGGCCCAGCAAGATCAGAATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttagctggaactcttctgttgcagGGCTCTGAATGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGCATGCTGCTTCTCATGGCCCAGCAAGATCAGAATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttagctggaactcttctgttgcagGGCTCTGAATGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGCATGCTGCTTCTCATGGCCCAGCAAGATCAGAATCTCGCATCTTCCCACACCTCTACTTGGTAAGGGGTCCTTTAGCTGGAACTCTTCTGTTGCAGGGCTCTGAATGGAA #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAG-CAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcaggGCCTCAGAGCAGGAAAAGACGGAACCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAG-TACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAG-CAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcaggGCCTCAGAGCAGGAAAAGACGGAACCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTA-GTACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGTACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGC-AGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAG-TACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAG-CAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAG-TACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGTACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGTACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGTACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgcagctaatcacctggtattgggttcttgtttactctattctattccagcGGCTTAAGTGTGCACGTCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCT-TATCCAGACCATGtggtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from CESAR gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgcagctaatcacctggtattgggttcttgtttactctattctattccagcGGCTTAAGTGTGCACGTCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTC-TTATCCAGACCATGtggtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGcACGTCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTT-ATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGCACGTCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCT-TATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Pairagon GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGCACGTCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCT-TATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTC--TCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGCACGTCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTT---ATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGAC---ATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTG--CACGTCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTT-ATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from GeneWise tgcagctaatcacctggtattgggttcttgtttactctattctattccagcggcttaagtgtgcacgtctggtggtcaaagccgaatcttcaagcctgtcttatccagaccatgtggtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGCACC-CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagtTGCCACAGCTGCACCAGCTGCACACCTAGGTCTTGTCCTGCCCCTCTGGAGTG-TACCCAAGTATACCTGGATGGGGATgggtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from CESAR tTCCCACAGCTGC---------ACC-CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagtTGCCACAGCTGCACCAGCTGCACACCTAGGTCTTGTCCTGCCCCTCTGGAGT-GTACCCAAGTATACCTGGATGGGGATgggtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Spaln_aa2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCACACCTAGGTCTTGTCCTGCCCCTCTGGAGTGTACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Spaln_nt2Genome TTCCCACAGCTGCACC----------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagTTGCCACAGCTGCACCAGCTGCACACCTAGGTCTTGTCCTGCCCCTCTGGAGTG-TACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Pairagon TTCCCACAGCTGCAC----------CCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagTTGCCACAGCTGCACCAGCTGCACACCTAGGTCTTGTCCTGCCCCTCTGGAGTG-TACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCACACCTAGGTCTTGTCCTGCCCCTCTGGAGTGTACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Exonerate_coding2genome gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagctgcaccagctgcacacctaggtcttgtcctgcccctctggagtgtacccaagtatacctggatggggatgggtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from GeneWise TTCCCACAGCTGCACCCTG------------GGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagTTGCCACAGCTGCACCAGCTGCACACCTAGGTCTTGTCCTGCCCCTCTG---GAGTGTACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagacAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAACGCCATGAAGGACTATACAAAAGCCATGCAC------C-AAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagacAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAACGCCATGAAGGACTATACAAAAGCCATG------CACC-AAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAACGCCATGAAGGACTATACAAAAGCCATGCA------CCAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAACGCCATGAAGGACTATACAAAAGCCATGCA-------CCAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAACGCCATGAAGGACTATACAAAAGCCATGCA-------CCAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAACGCCATGAAGGACTATACAAAAGCCAT------GCACCAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAACGCCATGAAGGACTATACAAAAGCCAT------GCACCAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAACGCCATGAAGGACTATACAAAAGCCAT------GCACCAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagctGGCAAGAAGACAACAGATGAGCGAGCTAGAGGAGATGTTGGAGAGTGGTA-TCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from CESAR ctGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagctGGCAAGAAGACAACAGATGAGCGAGCTAGAGGAGATGTTGGAGAGTGGT-ATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGcGAGCTAGAGGAGATGTTGGAGAGTGGTAT-CCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGCGAGCTAGAGGAGATGTTGGAGAGTGG-TATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Pairagon CTGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGCGAGCTAGAGGAGATGTTGGAGAGTGGT-ATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGCGAGCTAGAGGAGATGTTGGAGAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGCGAGCTAGAGGAGATGTTGGAGAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGCGAGCTAGAGGAGATGTTGGAGAGTGGTATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGT-CAGTGAACTTACCCTTATGGCTaggtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from CESAR AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAG-TCAGTGAACTTACCCTTATGGCTaggtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Spaln_aa2Genome AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACAcAGCAAACCAGCTCTGCATGCAGCCCGTCAGTC-AGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Spaln_nt2Genome AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGT-CAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Pairagon AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGT-CAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGG-AACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAG-GTCTGCCCTGCCGCTAGCCCCCAACAACCTTggtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from CESAR AATCTGAAACAGCAGAGG-AACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCA-GGTCTGCCCTGCCGCTAGCCCCCAACAACCTTggtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGGTCTGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGG-AACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAG-GTCTGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Pairagon AATCTGAAACAGCAGAGG-AACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAG-GTCTGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGGTCTGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGGTCTGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGGTCTGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGC-AAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGC-GAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGC-AAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCCAAGGTGATGGGGAAGGTGTTCTTCGGGCAG-CGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGC-AAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCcAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCG-AGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGG-CAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGC-GAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGG-CAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGC-GAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCT-CTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCG-AGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTG-GCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGCGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTG-GGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctag Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTG-GCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGCGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTT-GGGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggaccttt Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGCGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGGGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctag Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTG-GCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGCGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTG-GGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctag Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTG-GCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGCGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTG-GGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctag Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGCGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGGGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctag Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGCGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGGGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctag Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGCGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGGGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctag #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACC-ATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctgtggtttacatcataatgttctttatctctacagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCGGTGGACCTCC-GAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtatgaaattcccagtcagtccagagctgcttcacagtcagtccacagct Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACC-ATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctgtggtttacatcataatgttctttatctctacagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCGGTGGACCTC-CGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtatgaaattcccagtcagtccagagctgcttcacagtcagtccacagct Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctgtggtttacatcataatgttctttatctctacagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCGGTGGACCTCCGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtatgaaattcccagtcagtccagagctgcttcacagtcagtccacagct Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACC-ATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctgtggtttacatcataatgttctttatctctacagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCGGTGGACCTCC-GAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtatgaaattcccagtcagtccagagctgcttcacagtcagtccacagct Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTA-CCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctgtggtttacatcataatgttctttatctctacagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCGGTGGACCTCC-GAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtatgaaattcccagtcagtccagagctgcttcacagtcagtccacagct Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACC-ATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTC--CAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctgtggtttacatcataatgttctttatctctacagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCGGTGGACCTCCG---AGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtatgaaattcccagtcagtccagagctgcttcacagtcagtccacagct Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACC-ATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTC--CAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctgtggtttacatcataatgttctttatctctacagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCGGTGGACCTCCG---AGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtatgaaattcccagtcagtccagagctgcttcacagtcagtccacagct Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctgtggtttacatcataatgttctttatctctacagTACGCCATTCTGATGACCATGGCACTCACCCATCTTCATCAAGTATGTGCTGCATTCGGTGGACCTCCGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtatgaaattcccagtcagtccagagctgcttcacagtcagtccacagct #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaataggcTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGA-CAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from CESAR gcTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaataggcTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATG-ACAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGcCTGTATATGGCCTTCATGACCATCATGAC-AAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGC-TGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGA-CAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Pairagon GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGA-CAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGACAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGACAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGACAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATG-TTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTTC-GCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAggcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATG-TTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTT-CGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAggcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGT-TCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTT-CGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATG-TTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTT-CGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACA---------G gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGGCAAGTTCTgtgcatgccagggtagatagtggtggccagcaacatctgga #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagccTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTG-GCTGGCCTCCCTGgggtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagccTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACT-GGCTGGCCTCCCTGgggtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTAcCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGG-CTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTG-GCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTG-GCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACT---GGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTA--CCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGG-CTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCAT-TCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tcatgctattacactacaattccactctcacctctgattttttttttcagGGCCCAATTCATCTCCTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAG-AGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAggtgagtcattgtaggtcctcatagtagcgaattcacaacaaatgcaaata Alignment from CESAR GGACCAATTCAT-TCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tcatgctattacactacaattccactctcacctctgattttttttttcagGGCCCAATTCATCTCCTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACA-GAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAggtgagtcattgtaggtcctcatagtagcgaattcacaacaaatgcaaata Alignment from Spaln_aa2Genome GGACCAATTCAT-TCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tcatgctattacactacaattccactctcacctctgattttttttttcagGGCCCAATTCATcTCCTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGA-GCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgtaggtcctcatagtagcgaattcacaacaaatgcaaata Alignment from Spaln_nt2Genome GGACCAATTCAT-TCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tcatgctattacactacaattccactctcacctctgattttttttttcagGGCCCAATTCATCTCCTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACA-GAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgtaggtcctcatagtagcgaattcacaacaaatgcaaata Alignment from Pairagon GGACCAATTCAT-TCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tcatgctattacactacaattccactctcacctctgattttttttttcagGGCCCAATTCATCTCCTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACA-GAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgtaggtcctcatagtagcgaattcacaacaaatgcaaata Alignment from Exonerate_protein2genome GGACCAATTCAT-TCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACA--GGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tcatgctattacactacaattccactctcacctctgattttttttttcagGGCCCAATTCATCTCCTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGA---GCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgtaggtcctcatagtagcgaattcacaacaaatgcaaata Alignment from Exonerate_coding2genome GGACCAATTCATTC---CTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tcatgctattacactacaattccactctcacctctgattttttttttcagGGCCCAATTCAT--CTCCTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGA-GCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgtaggtcctcatagtagcgaattcacaacaaatgcaaata Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tcatgctattacactacaattccactctcacctctgattttttttttcagGGCCCAATTCATCTCCTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgagtcattgtaggtcctcatagtagcgaattcacaacaaatgcaaata #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccaggCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACCAACCTACACCGCCCAGAACAAGGATATTGTCACTGTC-GGCCCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGCCAG-----GCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccaggCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACCAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCGGCCCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGCCAG-----GCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACcAACCTACACCGCCCAGAACAAGGATATTGTCACTGTcgGCCCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGCCA-----GGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACCAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCGGCCCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTA-CACCCTGTACCGGCCAGAGCAGGGATACTGCCA-----GGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACCAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCGGCCCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGC-----CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACCAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCGGCCCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGC-----CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACCAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCGGCCCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAG------GCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACCAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCGGCCCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment GAGCTGGCAGCAGCCCCCGGG-GACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGCGACCCGCAGTGGATGGAGGCCACTGGCAGGG-CTTGCACCAACAGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATgggtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from CESAR GAGCTGGCAGCAGCCCCCGGG-GACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGCGACCCGCAGTGGATGGAGGCCACTGGCAGG-GCTTGCACCAACAGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATgggtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Spaln_aa2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGCGACCCGCAGTGGATGGAGGCCACTGGCAGGGCTTGCACCAACAGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Spaln_nt2Genome GAGCTGGCAGCAGCCCCCGGG-GACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGCGACCCGCAGTGGATGGAGGCCACTGGCAG-GGCTTGCACCAACAGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Pairagon GAGCTGGCAGCAGCCCCCGGG-GACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGCGACCCGCAGTGGATGGAGGCCACTGGCAG-GGCTTGCACCAACAGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Exonerate_protein2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGCGACCCGCAGTGGATGGAGGCCACTGGCAGGGCTTGCACCAACAGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Exonerate_coding2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGCGACCCGCAGTGGATGGAGGCCACTGGCAGGGCTTGCACCAACAGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from GeneWise GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGCGACCCGCAGTGGATGGAGGCCACTGGCAGGGCTTGCACCAACAGTTTCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCC-TCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGT-TGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCC-TCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTG-TTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCAT-CCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGT-TGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCA-TCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGT-TGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGC-ATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagagCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCC-TGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATtggtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGC-ATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagagCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGG-TCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATtggtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTG-GGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGT-CCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCT-GGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGT-CCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCT-GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCA-TGAGTTCTGTCTTGGTTGCATCTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCAcgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from CESAR TTTGTCCCTTCT-GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCA-TGAGTTCTGTCTTGGTTGCATCTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCAcgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Spaln_aa2Genome ATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagtttgtcccttctcgagATCTTCATGCATCGAGCAATCCACACCAT-GAGTTCTGTCTTGGTTGCATCTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Spaln_nt2Genome TTTGTCCCTTCT-GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCA-TGAGTTCTGTCTTGGTTGCATCTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Pairagon TTTGTCCCTTCT-GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCA-TGAGTTCTGTCTTGGTTGCATCTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATGAGTTCTGTCTTGGTTGCATCTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCATGAGTTCTGTCTTGGTTGCATCTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from GeneWise ------------------------------------------GTCCCTTCT------------GAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC GATGGCCTGCCAGGCCAGATTATTGTCTACAGCTTCTCTGCACCACCCAGTTTGTCCCTTCTCGAGATCTTCATGCATCGAGCAATCCACACCAT-GAGTTCTGTCTTGGTTGCATCTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCT-TTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTCTTAGCTACTGTCCCTATCCTGCTGCTGGGCACGCCCT-GTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCT-TTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTCTTAGCTACTGTCCCTATCCTGCTGCTGGGCACGC-CCTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTCTTAGCTACTGTCCCTATCCTGCTGCTGGGCACGCCCTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCT-TTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTCTTAGCTACTGTCCCTATCCTGCTGCTGGGCACG-CCCTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAG---AGCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCT-TTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTCTTAGCTACTGTCCCTATCCTGCTGCTGGGCACGCCC-TGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAG---AGCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTCTTAGCTACTGTCCCTATCCTGCTGCTGGGCACGCCCTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTCTTAGCTACTGTCCCTATCCTGCTGCTGGGCACGCCCTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTCTTAGCTACTGTCCCTATCCTGCTGCTGGGCACGCCCTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATC-TTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCT-CAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATC-TTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTC-TCAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCCTTCCTCCTGGGCCTCTACCTTGTGTT------CCTGATTGTCTCAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCT---------GCCCCCATTATTCACTTCATCAATTTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATC-TTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCCTTCCTCCTGGGCCT------CTACCTTGTGTTCCTGATTGTCT-CAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCCATTATTCA------CTTCATCAAT---TTCCTCTTCTCCCAAAACC---CCAATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCAT-CTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCCTTCCTCCTGGGCCT------CTACCTTGTGTTCCTGATTGTCT-CAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACC---CCAATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCCTTCCTCCTGGGCCTCTACCTTGTGTTCCTGATTGTCTC------AAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCCTTCCTCCTGGGCCT-----CTACCTTGTGTTCCTGATTGTCTC-AAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCCTTCCTCCTGGGCCTCTACCTTGTGTTCCTGATTGTCTC------AAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGC-TTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCA-CCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGC-TTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTC-ACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAG-CTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCA-CCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAG-CTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCA-CCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCCTTTCTCAACTCCTTCAAGATGAAGATGTCAGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTA-CTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag aatctaaaccagggaacctatctttttctaaccatgacttcttttccaagATCTGGCAGACCTTCTTTGGGGGTCAATACCTACCTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCT-TATCTCTACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGctgtgagtactatgatagttggtatgcatccagggtacctgacccaatgtat Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTA-CTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag aatctaaaccagggaacctatctttttctaaccatgacttcttttccaagATCTGGCAGACCTTCTTTGGGGGTCAATACCTACCTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGC-TTATCTCTACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGctgtgagtactatgatagttggtatgcatccagggtacctgacccaatgtat Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttctaaccatgacttcttttccaagATCTGGCAGACCTTCTTTGGGGGTCAATACCTACCTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTATCTCTACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagtactatgatagttggtatgcatccagggtacctgacccaatgtat Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTA-CTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttctaaccatgacttcttttccaagATCTGGCAGACCTTCTTTGGGGGTCAATACCTACCTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTT-ATCTCTACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagtactatgatagttggtatgcatccagggtacctgacccaatgtat Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTA-CTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttctaaccatgacttcttttccaagATCTGGCAGACCTTCTTTGGGGGTCAATACCTACCTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTT-ATCTCTACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagtactatgatagttggtatgcatccagggtacctgacccaatgtat Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTA-CTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGC--TTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttctaaccatgacttcttttccaagATCTGGCAGACCTTCTTTGGGGGTCAATACCTACCTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTT---ATCTCTACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagtactatgatagttggtatgcatccagggtacctgacccaatgtat Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTA-CTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGC--TTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttctaaccatgacttcttttccaagATCTGGCAGACCTTCTTTGGGGGTCAATACCTACCTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTT---ATCTCTACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagtactatgatagttggtatgcatccagggtacctgacccaatgtat Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttctaaccatgacttcttttccaagATCTGGCAGACCTTCTTTGGGGGTCAATACCTACCTCCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTATCTCTACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagtactatgatagttggtatgcatccagggtacctgacccaatgtat #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACC-CTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCC-CATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACC-CTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtcagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCCTCAATCCATGCAGTGTGAACACCACACACAAGTGC-CCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCC-TCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCC-CATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGA-CCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCC-CATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACC-CTCAACCAGTGCAGTGTGAACACCACACACAAGTGC--CTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCC---ATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACC-CTCAACCAGTGCAGTGTGAACACCACACACAAGTGC--CTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCC---ATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcaggatgtacatgccagtagtatttcttttttaaaaattgaagGTGGCAGCTGATCACACTGAAGGCCCTTTCTCAGAGCACAACACCCCTGCTTCCAGGCACCCGGGGTCCAC-TTCTGACCTGAAAGTCaagtgagttggggcagcctagctttcatgggcttctcacattcactccttgc Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcaggatgtacatgccagtagtatttcttttttaaaaattgaagGTGGCAGCTGATCACACTGAAGGCCCTTTCTCAGAGCACAACACCCCTGCTTCCAGGCACCCGGGGTCCA-CTTCTGACCTGAAAGTCaagtgagttggggcagcctagctttcatgggcttctcacattcactccttgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcaggatgtacatgccagtagtatttcttttttaaaaattgaagGTGGCAGCTGATCACACTGAAGGCCCTTTCTCAGAGcACAACACCCCTGCTTCCAGGCACCCGGGGTCCACT-TCTGACCTGAAAGTCAAgtgagttggggcagcctagctttcatgggcttctcacattcactccttgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcaggatgtacatgccagtagtatttcttttttaaaaattgaagGTGGCAGCTGATCACACTGAAGGCCCTTTCTCAGAGCACAACACCCCTGCTTCCAGGCACCCGGGGTCCAC-TTCTGACCTGAAAGTCAAgtgagttggggcagcctagctttcatgggcttctcacattcactccttgc Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAG-ACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcaggatgtacatgccagtagtatttcttttttaaaaattgaagGTGGCAGCTGATCACACTGAAGGCCCTTTCTCAGAGCACAACACCCCTGCTTCCAGGCACCCGGGGTCCAC-TTCTGACCTGAAAGTCAAgtgagttggggcagcctagctttcatgggcttctcacattcactccttgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcaggatgtacatgccagtagtatttcttttttaaaaattgaagGTGGCAGCTGATCACACTGAAGGCCCTTTCTCAGAGCACAACACCCCTGCTTCCAGGCACCCGGGGTCCACTTCTGACCTGAAAGTCAAgtgagttggggcagcctagctttcatgggcttctcacattcactccttgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcaggatgtacatgccagtagtatttcttttttaaaaattgaagGTGGCAGCTGATCACACTGAAGGCCCTTTCTCAGAGCACAACACCCCTGCTTCCAGGCACCCGGGGTCCACTTCTGACCTGAAAGTCAAgtgagttggggcagcctagctttcatgggcttctcacattcactccttgc Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcaggatgtacatgccagtagtatttcttttttaaaaattgaagGTGGCAGCTGATCACACTGAAGGCCCTTTCTCAGAGCACAACACCCCTGCTTCCAGGCACCCGGGGTCCACTTCTGACCTGAAAGTCAAgtgagttggggcagcctagctttcatgggcttctcacattcactccttgc #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGC-GCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTCGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACT-TGAGGAACTGGACAAGACATTTagtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from CESAR CTCAACGAATCCGTGAGC-GCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTCGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCAC-TTGAGGAACTGGACAAGACATTTagtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGC-GCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTcGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACTT-GAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAG-CGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTCGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACT-TGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Pairagon CTCAACGAATCCGTGAG-CGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTCGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACT-TGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTCGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACTTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTCGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACTTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTCGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACTTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTCAAGAGACATGCAGTACAGTTCGGTGTGAATGCAT-ATCTGGATGCCAATTAaggtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTCAAGAGACATGCAGTACAGTTCGGTGTGAATG-CATATCTGGATGCCAATTAaggtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTCAAGAGACATGCAGTACAGTTCGGTGTGAATGCATATCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTCAAGAGACATGCAGTACAGTTCGGTGTGAATGCA-TATCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTCAAGAGACATGCAGTACAGTTCGGTGTGAATGCA-TATCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTCAAGAGACATGCAGTACAGTTCGGTGTGAATGCATATCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTCAAGAGACATGCAGTACAGTTCGGTGTGAATGCATATCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTCAAGAGACATGCAGTACAGTTCGGTGTGAATGCATATCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGC-CCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGA-CAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCagtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from CESAR ATCTTTTCATTGGGCTATTGC-CCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCCAACTGGAAAGTGGCTTGCAGTGGGGATGG-AGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCagtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCA-ACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAG-ACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Pairagon ATCTTTTCATTGGGCTATTG-CCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAG-ACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATC-TCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagcgTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAG-AGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATC-TCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagcgTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCA-GAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACAT-CTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAG-AGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACAT-CTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAG-AGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTG-TCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaagtgaacctgagggcctgtagctctttctgttccctctccccaggtCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTGGTGCTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAG-AGACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTggtaagtgggtgaggggagtgaggtcaacgtacctgctgagatcccaccat Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTG-TCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaagtgaacctgagggcctgtagctctttctgttccctctccccaggtCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTGGTGCTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTA-GAGACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTggtaagtgggtgaggggagtgaggtcaacgtacctgctgagatcccaccat Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagctctttctgttccctctccccagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTGGTGCTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGAGACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTGgtaagtgggtgaggggagtgaggtcaacgtacctgctgagatcccaccat Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTG-TCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagctctttctgttccctctccccagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTGGTGCTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTA-GAGACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTGgtaagtgggtgaggggagtgaggtcaacgtacctgctgagatcccaccat Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTG-TCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagctctttctgttccctctccccagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTGGTGCTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCT-AGAGACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTGgtaagtgggtgaggggagtgaggtcaacgtacctgctgagatcccaccat Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTG-TCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTG--GGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagctctttctgttccctctccccagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTGGTGCTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGA---GACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTGgtaagtgggtgaggggagtgaggtcaacgtacctgctgagatcccaccat Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTG-TCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTG--GGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagctctttctgttccctctccccagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTGGTGCTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGA---GACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTGgtaagtgggtgaggggagtgaggtcaacgtacctgctgagatcccaccat Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTG-TCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagctctttctgttccctctccccagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTGGTGCTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGA-GACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTGgtaagtgggtgaggggagtgaggtcaacgtacctgctgagatcccaccat #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTG-GTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGCGTCTTTGGAGATTTAGCCTGGATACCACTTA-CTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGggtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTG-GTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGCGTCTTTGGAGATTTAGCCTGGATACCACTTA-CTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGggtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGCGTCTTTGGAGATTTAGCCTGGATACCACTTACTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTG-GTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGCGTCTTTGGAGATTTAGCCTGGATACCACTTA-CTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTG-GTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGCGTCTTTGGAGATTTAGCCTGGATACCACTTA-CTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGCGTCTTTGGAGATTTAGCCTGGATACCACTTACTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGCGTCTTTGGAGATTTAGCCTGGATACCACTTACTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from GeneWise GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGCGTCTTTGGAGATTTAGCCTGGATACCACTTACTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCA-CTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcttagtatgtatactacccccaagacaaccctgtgttctctctaaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACCTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTC-CACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtaggaagggtcccaaccaggtctcagcagatgagggagcaaagatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCA-CTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcttagtatgtatactacccccaagacaaccctgtgttctctctaaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACCTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACT-CCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtaggaagggtcccaaccaggtctcagcagatgagggagcaaagatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCA-CTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtatactacccccaagacaaccctgtgttctctctaagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGAcCTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCC-ACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaggaagggtcccaaccaggtctcagcagatgagggagcaaagatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCAC-TCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtatactacccccaagacaaccctgtgttctctctaagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACCTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTC-CACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaggaagggtcccaaccaggtctcagcagatgagggagcaaagatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCA-CTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtatactacccccaagacaaccctgtgttctctctaagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACCTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTC-CACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaggaagggtcccaaccaggtctcagcagatgagggagcaaagatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCA-CTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACT--CTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtatactacccccaagacaaccctgtgttctctctaagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACCTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCC---ACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaggaagggtcccaaccaggtctcagcagatgagggagcaaagatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCC---TGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtatactacccccaagacaaccctgtgttctctctaagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGA--CCTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCC-ACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaggaagggtcccaaccaggtctcagcagatgagggagcaaagatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGG-GCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtatactacccccaagacaaccctgtgttctctctaagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACCTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCC-ACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaggaagggtcccaaccaggtctcagcagatgagggagcaaagatgcat #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagcTGCTCCGAAGCACAGCAAGACTGCATGGACACCTTCAGGAACTGCTGTGCAGCTTT-CTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from CESAR cTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagcTGCTCCGAAGCACAGCAAGACTGCATGGACACCTTCAGGAACTGCTGTGCAGC-TTTCTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGCAAGACTGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTCTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCT-CATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGCAAGACTGCATGGACACCTTCAGGAACTGCTGTGCAGCTTT-CTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Pairagon CTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGCAAGACTGCATGGACACCTTCAGGAACTGCTGTGCAGCTTT-CTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG--TTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGCAAGACTGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTC---TCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG--TTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGCAAGACTGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTC---TCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGCAAGACTGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTCTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tttgtggtaaattctattcaggctaacctttgtataattttctcctctagaGGTTCTATAGGGCTCCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCC-AATCTTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTaggtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from CESAR aGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tttgtggtaaattctattcaggctaacctttgtataattttctcctctagaGGTTCTATAGGGCTCCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTC-CAATCTTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTaggtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCAATCTTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCC-AATCTTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Pairagon AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCC-AATCTTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCAATCTTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCAATCTTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTCGCTCTGGCCATCTCAGCTACAGCTATCTTCCAATCTTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGG-GCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGCGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTC-GTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGG-GCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGCGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTT-CGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGCGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGG-GCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGCGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTC-GTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGG-GCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGCGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTC-GTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGCGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGCGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGCGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa #### Tmem180_ID9862_4 --> 1 - 0 Original Alignment cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAA-CTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagtGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACCTGGCACACCACCAGAACTTCCTATGGTTTGTGG-TATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from CESAR cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAA-CTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagtGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACCTGGCACACCACCAGAACTTCCTATGGTTTG-TGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Spaln_aa2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACCTGGCACACCACCAGAACTTCCTATGGTTTGTGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Spaln_nt2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAA-CTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACCTGGCACACCACCAGAACTTCCTATGGTTTGT-GGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Pairagon CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAA-CTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACCTGGCACACCACCAGAACTTCCTATGGTTTGT-GGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Exonerate_protein2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACCTGGCACACCACCAGAACTTCCTATGGTTTGTGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Exonerate_coding2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACCTGGCACACCACCAGAACTTCCTATGGTTTGTGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from GeneWise CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACCTGGCACACCACCAGAACTTCCTATGGTTTGTGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCG-CGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTC-GGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCG-CGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTT-CGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCG-CGGATGATCCCCAAAGTGGAGTGG atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTcCGTATGATCCCCAAAGTGGAGTGGgcagcacttgttcggctgcagacactgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGG-ATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTC-GGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGC-GCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTC-GGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCG-CGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGCTGCAGACACTGtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Exonerate_coding2genome CCGCTGCGCCTGCAGGCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCG-CGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccCCCTACTTCTCCCAGGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGCTGCAGACACTGtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg #### Trpt1_ID1979_2 --> 0 - 1 Original Alignment GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGCGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGAC-TCCCATGCAAGCCggtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from CESAR GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGCGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGAC-TCCCATGCAAGCCggtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Spaln_aa2Genome GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGA---GCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGcGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTCCCATGCAAGCCGGTGGgtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Spaln_nt2Genome GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGCGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGAC-TCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Pairagon GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGCGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGAC-TCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Exonerate_protein2genome GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCT aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGCGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Exonerate_coding2genome GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCT aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGCGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from GeneWise GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTGAT- aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGCGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTCCCATGCAAGCCGGTGGgtaaacatgttggaactgagagtccaactggagcctccatctcttc #### Trpt1_ID1980_3 --> 2 - 0 Original Alignment atGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAG-CGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagatGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGC-CCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from CESAR atGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAG-CGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagatGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGG-CCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Spaln_aa2Genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Spaln_nt2Genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGG-TTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCC-CTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Pairagon ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAG-CGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGC-CCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Exonerate_protein2genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAG-CGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGG--CTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCC---CTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Exonerate_coding2genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAG-CGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGG--CTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCC---CTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from GeneWise ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAA-CTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAACTTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCAC-AGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTggtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from CESAR GTCCCTGAGTTGGAA-CTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAACTTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCA-CAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTggtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAA-CTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAAcTTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACA-GTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAAC-TGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTG---GAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAACTTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCAC-AGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCC---AGACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Pairagon GTCCCTGAGTTGGAAC-TGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAACTTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCAC-AGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCC---AGACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAACTTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAACTTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAACTTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACT-GCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACACGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAG-TGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from CESAR ACCAACGCCAGACTCACT-GCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACACGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTA-GTGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACT-GCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAcGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGT-GAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACT-GCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACACGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAG-TGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Pairagon CAGACCAACGCCAGACTCAC-TGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttcTAGACTAATGCCCGACTAACACGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAG-TGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Exonerate_protein2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACACGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGTGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Exonerate_coding2genome AAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagactaatgcccgactaacacggAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGT-AGTGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctag---ACTAATGCCCGACTAACACGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGTGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCC-CTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCT-AGAGCAAGTTGGCCCTGAAggtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACT-CCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCC-TAGAGCAAGTTGGCCCTGAAggtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCC-CTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCT-AGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGAC-TCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCT-AGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAG-CAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtaggATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACCAACGCCCACCACGAGGACCCCACACACCTT-TCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAG-CAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtaggATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACCAACGCCCACCACGAGGACCCCACACAC-CTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACCAACGCCCACCACGAGGACCCCACACACCTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGC-AGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACCAACGCCCACCACGAGGACCCCACACA-CCTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAG-CAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACCAACGCCCACCACGAGGACCCCACACACCTT-TCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACCAACGCCCACCACGAGGACCCCACACACCTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACCAACGCCCACCACGAGGACCCCACACACCTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACCAACGCCCACCACGAGGACCCCACACACCTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTCGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTCATCAATGTACAGATATGTggtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from CESAR TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTCGCTCAGCTGCCAATGATTTACTTCCTCAACAACTAT-CGTATGACTTGAACCATACACTCATCAATGTACAGATATGTggtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Spaln_aa2Genome GCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagttgagCTTCACATGTCGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCG-TATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTCGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Pairagon TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTCGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATC-GTATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC--CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTCGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCG---TATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC--CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTCGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCG---TATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from GeneWise GCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagttgagCTTCACATGTCGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCG-TATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGG-ATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagatATTGATGAATGCCAAAACCCAGGGCATCTGCGGTCAGATTTGTATCAACTTAAAAGGCG-TTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from CESAR atATTGATGAATGCCAAAACCCGGGG-ATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagatATTGATGAATGCCAAAACCCAGGGCATCTGCGGTCAGATTTGTATCAACTTAAAAGGC-GTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGCATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCG-GGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGCATCTGCGGTCAGATTTGTATCAACTTAAAAGGC-GTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGG-ATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGCATCTGCGGTCAGATTTGTATCAACTTAAAAGGC-GTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGCATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGCATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGCATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAG-ATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag caacagaatttgcctacaagcaaaaacaacatttttttctactttgacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGCATTGGCCTAGAGAGAAAGGAATATATCC-ACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTaggtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAG-ATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag caacagaatttgcctacaagcaaaaacaacatttttttctactttgacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGCATTGGCCTAGAGAGAAAGGAATATATCC-ACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTaggtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGCATTGGCCTAGAGAGAAAGGAATATATCCACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAG-ATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGCATTGGCCTAGAGAGAAAGGAATATATCC-ACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAG-ATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGCATTGGCCTAGAGAGAAAGGAATATATCC-ACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGCATTGGCCTAGAGAGAAAGGAATATATCCACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGCATTGGCCTAGAGAGAAAGGAATATATCCACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from GeneWise GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGCATTGGCCTAGAGAGAAAGGAATATATCCACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg #### Vldlr_ID5818_17 --> 2 - 1 Original Alignment ggATCAATGTGACCACAGCAGTATCA-GAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt ctgctattagtccataaccctaggaatcattttattcttttgtattgcagggATTAATGTTACCACAGCAGTATCACGAAGTGAGCGTTCCCCCAAAAGGGACTT-AGCCGCCTGGGCCATCCTTCCTCTCtgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from CESAR ggATCAATGTGACCACAGCAGTATCA-GAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt ctgctattagtccataaccctaggaatcattttattcttttgtattgcagggATTAATGTTACCACAGCAGTATCACGAAGTGAGCGTTCCCCCAAAAGGGACT-TAGCCGCCTGGGCCATCCTTCCTCTCtgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Spaln_aa2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCACGAAGTGAGCGTTCCCCCAAAAGGGACTTAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Spaln_nt2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCACGAAGTGAGCGTTCCCCCAAAAGGGACTTAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Pairagon GGATCAATGTGACCACAGCAGTATCA-GAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCACGAAGTGAGCGTTCCCCCAAAAGGGACTT-AGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Exonerate_protein2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCACGAAGTGAGCGTTCCCCCAAAAGGGACTTAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Exonerate_coding2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCACGAAGTGAGCGTTCCCCCAAAAGGGACTTAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from GeneWise GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCACGAAGTGAGCGTTCCCCCAAAAGGGACTTAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCATTAGGATTAAAAGCACTAG-TGGTGGAGCCGTTggtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCATTAGGATTAAAAGCACTAG-TGGTGGAGCCGTTggtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCC---GTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAAcTTTGTGGCGGGAATGGCATTAGGATTAAAAGCACTAGTGGTGGAGCCGTTGGTAAgcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCATTAGGATTAAAAGCACTAG-TGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAG-TTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCATTAGGATTAAAAGCACTAG-TGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCATTAGGATTAAAAGCACTAGTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCATTAGGATTAAAAGCACTAGTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAACTTTGTGGCGGGAATGGCATTAGGATTAAAAGCACTAGTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagctTTAAAGCTACCCACAAATGAAGATATTATTACATTGCCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGG-TCAGAAACAGAACGTATCTGAAATTAAAATTGAAggtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagctTTAAAGCTACCCACAAATGAAGATATTATTACATTGCCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAG-GTCAGAAACAGAACGTATCTGAAATTAAAATTGAAggtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGG-TCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGG-TCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAG--GATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGT---CAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTG-CAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAG--GATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGT---CAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATT-CCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctaggtAGCCTTAAACTTAAAATCCCCATGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTT-GGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from CESAR gtAGTCTTAAACTTAAAATT-CCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctaggtAGCCTTAAACTTAAAATCCCCATGGAAAAACCTTTATACTCAACCAGTTGGAGCAG-TTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCCATGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCC-ATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCCATGGAAAAACCTTTATACTCAACCAGTTGGAGCAG-TTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Pairagon GTAGTCTTAAACTTAAAAT-TCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCCATGGAAAAACCTTTATACTCAACCAGTTGGAGCAG-TTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCCATGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCCATGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from GeneWise ------CTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCCATGGAAAAACCTTTATACTCAACCAGTTGGAGCAGT-TTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAG-GTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagacTGTAACTTTGAAGGGAGAAAGCGTAGTGAATGGTCAGGTTTTCACCCTGGATG-TGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from CESAR acTGTAACTTCGAAGGGAGAAAG-GTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagacTGTAACTTTGAAGGGAGAAAGCGTAGTGAATGGTCAGGTTTTCACCCTGGAT-GTGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAG-GTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGcGTAGTGAATGGTCAGGTTTTCACCCTGGATGT-GAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAG-AAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGCGTAGTGAATGGTCAGGTTTTCACCCTGGATG-TGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAG-GTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGCGTAGTGAATGGTCAGGTTTTCACCCTGGATG-TGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGCGTAGTGAATGGTCAGGTTTTCACCCTGGATGTGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGCGTAGTGAATGGTCAGGTTTTCACCCTGGATGTGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGCGTAGTGAATGGTCAGGTTTTCACCCTGGATGTGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagggGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCT-GGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagggGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCT-GGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCG-CGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCT-GGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCT-GGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Exonerate_coding2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from GeneWise ----------------------------------------------------GTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA CAGTTGCTGTATTTTGTCATCTCAGTATGATCTCTTCTCTCGGATTTCAGGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGG-AAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGCAAGGAAAATGCTCTGAAAGTATGGGACTTACAGG-GTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGG-AAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGCAAGGAAAATGCTCTGAAAGTATGGGACTTAC-AGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGT-GGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTgGGCAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGG-TCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAA-GAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGCAAGGAAAATGCTCTGAAAGTATGGGACTTACA-GGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGG-AAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGCAAGGAAAATGCTCTGAAAGTATGGGACTTACA-GGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGCAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGCAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGCAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCAC-CCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaataccccctcctcatcccaccgggaaggtAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTAGTGTTCGTGGGCTGCACTGCCATCCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGG-CAGAATATTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtaagtgcccaaactttgtgctagccgcactaacttacatttgctggaac Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCAC-CCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaataccccctcctcatcccaccgggaaggtAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTAGTGTTCGTGGGCTGCACTGCCATCCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTG-GCAGAATATTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtaagtgcccaaactttgtgctagccgcactaacttacatttgctggaac Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaataccccctcctcatcccaccgggaagGTAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTAGTGTTCGTGGGCTGCACTGCCATCCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGCAGAATATTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtaagtgcccaaactttgtgctagccgcactaacttacatttgctggaac Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCA-CCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaataccccctcctcatcccaccgggaagGTAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTAGTGTTCGTGGGCTGCACTGCCATCCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGG-CAGAATATTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtaagtgcccaaactttgtgctagccgcactaacttacatttgctggaac Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCA-CCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaataccccctcctcatcccaccgggaagGTAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTAGTGTTCGTGGGCTGCACTGCCATCCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGG-CAGAATATTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtaagtgcccaaactttgtgctagccgcactaacttacatttgctggaac Alignment from Exonerate_protein2genome GCAAGGGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaataccccctcctcatcccaccgGGAAGGTAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTAGTGTTCGTGGGCTGCACTGCCATCCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGCAGAATATTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtaagtgcccaaactttgtgctagccgcactaacttacatttgctggaac Alignment from Exonerate_coding2genome GCAAGGGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaataccccctcctcatcccaccgGGAAGGTAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTAGTGTTCGTGGGCTGCACTGCCATCCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGCAGAATATTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtaagtgcccaaactttgtgctagccgcactaacttacatttgctggaac Alignment from GeneWise --CGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaataccccctcctcatcccaccgggaagGTAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTAGTGTTCGTGGGCTGCACTGCCATCCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGCAGAATATTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtaagtgcccaaactttgtgctagccgcactaacttacatttgctggaac #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGC-AATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCT-TAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGC-AATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCCAATCAGAAGGCTGTTGCAAATTACACCCTAAGC-TTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAG-CAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCT-TAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAG-CAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCT-TAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGAC-CCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaggacagtcaccagggttcttattccctttgtcttggttcttttataggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCT-CATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgaacccttgggaaggaggaggtaggattggagccaggattt Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGAC-CCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaggacagtcaccagggttcttattccctttgtcttggttcttttataggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCT-CATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgaacccttgggaaggaggaggtaggattggagccaggattt Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaggacagtcaccagggttcttattccctttgtcttggttcttttatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCTCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgaacccttgggaaggaggaggtaggattggagccaggattt Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCC-AGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaggacagtcaccagggttcttattccctttgtcttggttcttttatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCT-CATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgaacccttgggaaggaggaggtaggattggagccaggattt Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGA-CCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaggacagtcaccagggttcttattccctttgtcttggttcttttatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCT-CATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgaacccttgggaaggaggaggtaggattggagccaggattt Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaggacagtcaccagggttcttattccctttgtcttggttcttttatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCTCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgaacccttgggaaggaggaggtaggattggagccaggattt Alignment from Exonerate_coding2genome GGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaggacagtcaccagggttcttattccctttgtcttggttcttttataGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCTCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgaacccttgggaaggaggaggtaggattggagccaggattt Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCAC---GGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaggacagtcaccagggtTCTTATTCCCTTTGTCTTGGTTCTTTTATAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCCACTGGCCAACATGGCAATGGCCTATGGCACCTCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgaacccttgggaaggaggaggtaggattggagccaggattt #### Yif1a_ID831_3 --> 0 - 0 Original Alignment CTGCACCGTTTTGTGTCCGTGAAC-AAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggacccagtcttacagcaggaactatctctttcttgatccccagTTACACCGTTTTGTGTCTGTGAATCAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTG-TAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtgggtccatccagagtgctggccccctacttgtgaatagcctgcttgat Alignment from CESAR CTGCACCGTTTTGTGTCCGTGAAC-AAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggacccagtcttacagcaggaactatctctttcttgatccccagTTACACCGTTTTGTGTCTGTGAATCAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTT-GTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtgggtccatccagagtgctggccccctacttgtgaatagcctgcttgat Alignment from Spaln_aa2Genome CTGCACCGTTTTGTGTCCGTGAAC-AAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggacccagtcttacagcaggaactatctctttcttgatccccagTTACACCGTTTTGTGTCTGTGAATcAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGTAAG-AAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtgggtccatccagagtgctggccccctacttgtgaatagcctgcttgat Alignment from Spaln_nt2Genome CTGCACCGTTTTGTGTCCGTGAA-CAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggacccagtcttacagcaggaactatctctttcttgatccccagTTACACCGTTTTGTGTCTGTGAATCAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTG-TAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtgggtccatccagagtgctggccccctacttgtgaatagcctgcttgat Alignment from Pairagon CTGCACCGTTTTGTGTCCGTGAA-CAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggacccagtcttacagcaggaactatctctttcttgatccccagTTACACCGTTTTGTGTCTGTGAATCAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTG-TAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtgggtccatccagagtgctggccccctacttgtgaatagcctgcttgat Alignment from Exonerate_protein2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggacccagtcttacagcaggaactatctctttcttgatccccagTTACACCGTTTTGTGTCTGTGAATCAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtgggtccatccagagtgctggccccctacttgtgaatagcctgcttgat Alignment from Exonerate_coding2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggacccagtcttacagcaggaactatctctttcttgatccccagTTACACCGTTTTGTGTCTGTGAATCAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtgggtccatccagagtgctggccccctacttgtgaatagcctgcttgat Alignment from GeneWise CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggacccagtcttacagcaggaactatctctttcttgatccccagTTACACCGTTTTGTGTCTGTGAATCAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtgggtccatccagagtgctggccccctacttgtgaatagcctgcttgat #### Yif1a_ID832_4 --> 0 - 1 Original Alignment AACTGGAAAATGCAATACAGCCAT-GATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATCGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCC-TGACCTTTATATCCCAagtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from CESAR AACTGGAAAATGCAATACAGCCAT-GATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATCGATGTGCCTCTGCCCCCACGGAAAGATCTCAATA-CCCTGACCTTTATATCCCAagtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Spaln_aa2Genome AACTGGAAAATGCAATACAGCCAT-GATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATcGATGTGCCTCTGCCCCCACGGAAAGATCTCAATAC-CCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Spaln_nt2Genome AACTGGAAAATGCAATACAGCCAT-GATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATCGATGTGCCTCTGCCCCCACGGAAAGATCTCAAT-ACCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Pairagon AACTGGAAAATGCAATACAGCCAT-GATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATCGATGTGCCTCTGCCCCCACGGAAAGATCTCAATA-CCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Exonerate_protein2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATCGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Exonerate_coding2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATCGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from GeneWise AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATCGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttgctcattccttctctgtaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACT-GGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGgggtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttgctcattccttctctgtaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTT-ACTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGgggtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGcGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTA-CTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTA-CTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTA-CTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTAC--CTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTG---GCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTAC--CTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTG---GCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcactactacttcctagtagcctttccaatttcatcacttgttttttagGTGTTTGTGGTGCTAGTGATTGTGTTGCCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACTTACT-AGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCTCAGgtgagtctccatagtgtaaggcaagagacaatgctggctgctatgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcactactacttcctagtagcctttccaatttcatcacttgttttttagGTGTTTGTGGTGCTAGTGATTGTGTTGCCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACTTAC-TAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCTCAGgtgagtctccatagtgtaaggcaagagacaatgctggctgctatgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcactactacttcctagtagcctttccaatttcatcacttgttttttagGTGTTTGTGGTGCTAGTGATTGTGTTGCCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACTTACTAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCTCAGgtgagtctccatagtgtaaggcaagagacaatgctggctgctatgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcactactacttcctagtagcctttccaatttcatcacttgttttttagGTGTTTGTGGTGCTAGTGATTGTGTTGCCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACTTACT-AGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCTCAGgtgagtctccatagtgtaaggcaagagacaatgctggctgctatgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcactactacttcctagtagcctttccaatttcatcacttgttttttagGTGTTTGTGGTGCTAGTGATTGTGTTGCCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACTTACT-AGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCTCAGgtgagtctccatagtgtaaggcaagagacaatgctggctgctatgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTAC--TCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcactactacttcctagtagcctttccaatttcatcacttgttttttagGTGTTTGTGGTGCTAGTGATTGTGTTGCCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACTTACTA---GTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCTCAGgtgagtctccatagtgtaaggcaagagacaatgctggctgctatgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTAT-CTGTGTGTCCTGCCCCTCATCCTCCGAACCTAC--TCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcactactacttcctagtagcctttccaatttcatcacttgttttttagGTGTTTGTGGTGCTAGTGATTGTGTTGCCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACTTACTA---GTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCTCAGgtgagtctccatagtgtaaggcaagagacaatgctggctgctatgctagc Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcactactacttcctagtagcctttccaatttcatcacttgttttttagGTGTTTGTGGTGCTAGTGATTGTGTTGCCTGGTTCTATTGTAGCCATTGCTTATCCTGTGTGTTCTGCCACTCATCCTCCGAACTTACTAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCTCAGgtgagtctccatagtgtaaggcaagagacaatgctggctgctatgctagc #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAG-AAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGCAAATGCATTTATCCCAAGCCGGCTCGCACACACC-CTGCAGCATCTGTAAAaggtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAG-AAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGCAAATGCATTTATCCCAAGCCGGCTCGCACACAC-CCTGCAGCATCTGTAAAaggtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAG-AAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGcAAATGCATTTATCCCAAGCCGGCTCGCACACACCC-TGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAG-AAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGCAAATGCATTTATCCCAAGCCGGCTCGCACACACC-CTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAG-AAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGCAAATGCATTTATCCCAAGCCGGCTCGCACACACC-CTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAG-AAGTGCATTTATCCCAAGCCAGCCCGAACACAC--CACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGCAAATGCATTTATCCCAAGCCGGCTCGCACACACCC---TGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAG-AAGTGCATTTATCCCAAGCCAGCCCGAACACAC--CACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGCAAATGCATTTATCCCAAGCCGGCTCGCACACACCC---TGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGCAAATGCATTTATCCCAAGCCGGCTCGCACACACCCTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCT-ACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagggACAGCTAGTGGTTCTAACAGTCCCCACCTCGGATGCAGCATCAGTACAGAAACCAG-TGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGaggtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagggACAGCTAGTGGTTCTAACAGTCCCCACCTCGGATGCAGCATCAGTACAGAAACCA-GTGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGaggtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCCACCTCGGATGCAGCATCAGTACAGAAACCAGTGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCCACCTCGGATGCAGCATCAGTACAGAAACCAG-TGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGT-CCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCCACCTCGGATGCAGCATCAGTACAGAAACCAG-TGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCCACCTCGGATGCAGCATCAGTACAGAAACCAGTGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCCACCTCGGATGCAGCATCAGTACAGAAACCAGTGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCCACCTCGGATGCAGCATCAGTACAGAAACCAGTGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTC-CGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatagtagattcttttttccttttgttagagCGTCGACGGTTCCCCGGACACCACAACATCACTCTCCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTG-GGATGCAGCTAAACTTGAGCCCTCAggtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTC-CGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatagtagattcttttttccttttgttagagCGTCGACGGTTCCCCGGACACCACAACATCACTCTCCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTT-GGGATGCAGCTAAACTTGAGCCCTCAggtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTC-CGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACACCACAACATCACTCTCcCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGG-GATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGG-GCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACACCACAACATCACTCTCCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGC-TTTGGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCT-CCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACACCACAACATCACTCTCCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTG-GGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTC-CGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCA gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACACCACAACATCACTCTCCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTC-CGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACACCACAACATCACTCTCCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTT-GGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACACCACAACATCACTCTCCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac #### Zp1_ID3065_7 --> 1 - 1 Original Alignment gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATC-CAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg gtttgccccaacttacaagctctcccaagcctgctttattacttttgtaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACCAGGCATCTATCTCTCCACCTCAACCCCCTGCCC-TGTAACACAATCTGGAGCCCTCAGGCTGCAATTGAAGATCGCTATGggtaagtgctctggcctgtgtggtaccttcctaccttgcagcttaaagtac Alignment from CESAR gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATC-CAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg gtttgccccaacttacaagctctcccaagcctgctttattacttttgtaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACCAGGCATCTATCTCTCCACCTCAACCCCCTG-CCCTGTAACACAATCTGGAGCCCTCAGGCTGCAATTGAAGATCGCTATGggtaagtgctctggcctgtgtggtaccttcctaccttgcagcttaaagtac Alignment from Spaln_aa2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaagctctcccaagcctgctttattacttttgtagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACCAGGCATCTATCTCTCCACCTCAACCCCCTGCCCTGTAACACAATCTGGAGCCCTCAGGCTGCAATTGAAGATCGCTATGGgtaagtgctctggcctgtgtggtaccttcctaccttgcagcttaaagtac Alignment from Spaln_nt2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCAT-CCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaagctctcccaagcctgctttattacttttgtagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACCAGGCATCTATCTCTCCACCTCAACCCCCTG-CCCTGTAACACAATCTGGAGCCCTCAGGCTGCAATTGAAGATCGCTATGGgtaagtgctctggcctgtgtggtaccttcctaccttgcagcttaaagtac Alignment from Pairagon GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCAT-CCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaagctctcccaagcctgctttattacttttgtagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACCAGGCATCTATCTCTCCACCTCAACCCCCTG-CCCTGTAACACAATCTGGAGCCCTCAGGCTGCAATTGAAGATCGCTATGGgtaagtgctctggcctgtgtggtaccttcctaccttgcagcttaaagtac Alignment from Exonerate_protein2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaagctctcccaagcctgctttattacttttgtagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACCAGGCATCTATCTCTCCACCTCAACCCCCTGCCCTGTAACACAATCTGGAGCCCTCAGGCTGCAATTGAAGATCGCTATGGgtaagtgctctggcctgtgtggtaccttcctaccttgcagcttaaagtac Alignment from Exonerate_coding2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaagctctcccaagcctgctttattacttttgtagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACCAGGCATCTATCTCTCCACCTCAACCCCCTGCCCTGTAACACAATCTGGAGCCCTCAGGCTGCAATTGAAGATCGCTATGGgtaagtgctctggcctgtgtggtaccttcctaccttgcagcttaaagtac Alignment from GeneWise GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaagctctcccaagcctgctttattacttttgtagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACCAGGCATCTATCTCTCCACCTCAACCCCCTGCCCTGTAACACAATCTGGAGCCCTCAGGCTGCAATTGAAGATCGCTATGGgtaagtgctctggcctgtgtggtaccttcctaccttgcagcttaaagtac #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCA-ACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCACACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGAT-TACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCA-ACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCACACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGA-TTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCACACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCA-ACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGA---------GGCCGGGTCTGGCCA------TATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCACACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGAT-TACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCA-ACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGA---------GGCCGGGTCTGGCCATA------TCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCACACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGAT-TACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCA-ACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGA--TCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCACACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATT---ACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCA-ACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGA--TCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCACACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATT---ACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAGGT- gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCACACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGGTAgtggaacctcatctgtgtacagactaagtactatgacctgtgggctg ####