#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGAC-CTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCCTGGCCCTTATGAACCTGCTGACCTGGATGA-AGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGAC-CTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCCTGGCCCTTATGAACCTGCTGACCTGGATGA-AGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCCTGGCCCTTATGAACCTGCTGACCTGGATGAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGAC-CTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCCTGGCCCTTATGAACCTGCTGACCTGGATGAA-GAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGA-CCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCCTGGCCCTTATGAACCTGCTGACCTGGATGAA-GAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCCTGGCCCTTATGAACCTGCTGACCTGGATGAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCCTGGCCCTTATGAACCTGCTGACCTGGATGAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCCTGGCCCTTATGAACCTGCTGACCTGGATGAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg #### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGC-ACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCCACGGCCTTCATCTGGAAGGAACCCTTTGGTCTGG-GCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAggtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from CESAR CTCACCAAGCTGAGC-ACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCCACGGCCTTCATCTGGAAGGAACCCTTTGGTCTG-GGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAggtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Spaln_aa2Genome CTCACCAAGCTGAGC-ACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCcACGGCCTTCATCTGGAAGGAACCCTTTGGTCTGGG-CTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Spaln_nt2Genome CTCACCAAGCTGAGC-ACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCCACGGCCTTCATCTGGAAGGAACCCTTTGGTCTGG-GCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Pairagon CTCACCAAGCTGAG-CACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCCACGGCCTTCATCTGGAAGGAACCCTTTGGTCTGG-GCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCCACGGCCTTCATCTGGAAGGAACCCTTTGGTCTGGGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCCACGGCCTTCATCTGGAAGGAACCCTTTGGTCTGGGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCCACGGCCTTCATCTGGAAGGAACCCTTTGGTCTGGGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacaggaAACTGTGTGGTGCTAAAGCCATCAGAAATTCAGCAGGAACACAGAGAAGGTGCTGGCAGAGC-TCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacaggaAACTGTGTGGTGCTAAAGCCATCAGAAATTCAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTC-CACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTcAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTCCA-CCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTCAGCAGGAACACAGAGAAGGTGCTGGCAGAGCT-CCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTCAGCAGGAACACAGAGAAGGTGCTGGCAGAGCT-CCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTCAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTCAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTCAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACG-CTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg actacagttggccgagtgagcccttttcacagctttgcttggttctgcagg---TGCTCCCGTGCGAACATTACACCTATCTGGGAAGAAGCGCAGGAAACTATTGCAGCAGATCC-ACTTGCCCAGAAACAAGAAGCAGCCATGAAAggttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACG-CTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg actacagttggccgagtgagcccttttcacagctttgcttggttctgcaggTGC---TCCCGTGCGAACATTACACCTATCTGGGAAGAAGCGCAGGAAACTATTGCAGCAGATC-CACTTGCCCAGAAACAAGAAGCAGCCATGAAAggttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACG-CTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGTGCTCC---CGTGCGAACATTACAcCTATCTGGGAAGAAGCGCAGGAAACTATTGCAGCAGATCCA-CTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Spaln_nt2Genome GTGCTC--GTGCCAACATCACGC-TGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGTGCTCCCGTGCGAACATTACACCTATCTGGGAAGAAGCGCAGGAAACTATTGCAGCAGATCC-ACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Pairagon GTCCAGTGCT--CGTGCCAACATCACG-CTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcag-----GTGCTCCCGTGCGAACATTACACCTATCTGGGAAGAAGCGCAGGAAACTATTGCAGCAGATCC-ACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgCAGGTGCTCCCGTGCGAACATTACACCTATCTGGGAAGAAGCGCAGGAAACTATTGCAGCAGATCCACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGTGCTCC--CGTGCGAACATTACACCTATCTGGGAAGAAGCGCAGGAAACTATTGCAGCAGATCCA-CTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actacagttggccgagtgagcccttttcacagctttgcttggttctgcagGTGCTCC---CGTGCGAACATTACACCTATCTGGGAAGAAGCGCAGGAAACTATTGCAGCAGATCCACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgttagccttgaaaaagtggcactggattttccctgacttttttttgtgac #### 2010012O05Rik_ID10003_2 --> 0 - 0 Original Alignment CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTT-GCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from CESAR CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATGCTA-TTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Spaln_aa2Genome CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGATAG accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGcGCAGCTCGAAACATGGTACTACAGGAAGATGCTATT---TGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Spaln_nt2Genome CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATGCTAT-TTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Pairagon CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATGCTAT-TTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Exonerate_protein2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Exonerate_coding2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from GeneWise accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagctgctggggcagcgcagctcgaaacatggtactacaggaagatgctatttgcgttcagaagatgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATC-AGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATCA-CAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from CESAR GTCACAGATAATATC-AGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGA-TCACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Spaln_aa2Genome GATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacaggtcacagATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATCAC-AGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Spaln_nt2Genome GTCACAGATAATATC-AGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATC-ACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Pairagon GTCACAGATAATAT-CAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATC-ACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATCACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Exonerate_coding2genome GTCACAGATAATAT---CAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAAT--ATCCAGCCAGAACACTATCCTGGAATATGTAATGAT-CACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from GeneWise GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCCAGCCAGAACACTATCCTGGAATATGTAATGATCACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCG-GATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagaaTCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCACGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAG-TTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGagtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCG-GATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagaaTCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCACGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTA-GTTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGagtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCG-GATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAcGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGT-TCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAA-CCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCACGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAG-TTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCC---TGAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCG-GATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCACGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAG-TTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCC---TGAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCACGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGTTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCACGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGTTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCACGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGTTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATT-TTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTCTTAGAGGACTTGCAGAAAATTGGGAAGGAGG-CGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from CESAR TGTGTAAAGGAAGCCATT-TTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTCTTAGAGGACTTGCAGAAAATTGGGAAGG-AGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATT-TTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTcTTAGAGGACTTGCAGAAAATTGGGAAGGA-GGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATT-TTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTCTTAGAGGACTTGCAGAAAATTGGGAAGGA-GGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Pairagon TGTGTAAAGGAAGCCATT-TTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTCTTAGAGGACTTGCAGAAAATTGGGAAGGA-GGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTCTTAGAGGACTTGCAGAAAATTGGGAAGGAGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTCTTAGAGGACTTGCAGAAAATTGGGAAGGAGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTCTTAGAGGACTTGCAGAAAATTGGGAAGGAGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag #### Actn3_ID690_20 --> 0 - 0 Original Alignment GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTG-GACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG acaatgccctctctaatttagcatctatcatccttccctccctcctgtagGGAGAAGTGGAGTTTGCTCGAATCATGACAATGGTTCGACCCCAATGCAGCTGGAGTTGTGAACTTCCAGGCTTTCA-AGACTCCATGACACGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtctctttggtgggaggggctgtaatgctaaggcatgacccataac Alignment from CESAR GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTG-GACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG acaatgccctctctaatttagcatctatcatccttccctccctcctgtagGGAGAAGTGGAGTTTGCTCGAATCATGACAATGGTTCGACCCCAATGCAGCTGGAGTTGTGAACTTCCAGGCTTTC-AAGACTCCATGACACGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtctctttggtgggaggggctgtaatgctaaggcatgacccataac Alignment from Spaln_aa2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG acaatgccctctctaatttagcatctatcatccttccctccctcctgtagGGAGAAGTGGAGTTTGCTCGAATCATGACAATGGTTCGACCCCAATGCAGCTGGAGTTGTGAACTTCCAGGCTTTCAAGACTCCATGACACGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtctctttggtgggaggggctgtaatgctaaggcatgacccataac Alignment from Spaln_nt2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTG-GACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG acaatgccctctctaatttagcatctatcatccttccctccctcctgtagGGAGAAGTGGAGTTTGCTCGAATCATGACAATGGTTCGACCCCAATGCAGCTGGAGTTGTGAACTTCCAGGCTTTCA-AGACTCCATGACACGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATT---AATCCTGACAGGTGATAAAgtaagtctctttggtgggaggggctgtaatgctaaggcatgacccataac Alignment from Pairagon GGAGAAGTGGAGTTTGCTCGAATCATGACCATGG-TGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG acaatgccctctctaatttagcatctatcatccttccctccctcctgtagGGAGAAGTGGAGTTTGCTCGAATCATGACAATGGTTCGACCCCAATGCAGCTGGAGTTGTGAACTTCCAGGCTTTCA-AGACTCCATGACACGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATT---AATCCTGACAGGTGATAAAgtaagtctctttggtgggaggggctgtaatgctaaggcatgacccataac Alignment from Exonerate_protein2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG acaatgccctctctaatttagcatctatcatccttccctccctcctgtagGGAGAAGTGGAGTTTGCTCGAATCATGACAATGGTTCGACCCCAATGCAGCTGGAGTTGTGAACTTCCAGGCTTTCAAGACTCCATGACACGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtctctttggtgggaggggctgtaatgctaaggcatgacccataac Alignment from Exonerate_coding2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG acaatgccctctctaatttagcatctatcatccttccctccctcctgtagGGAGAAGTGGAGTTTGCTCGAATCATGACAATGGTTCGACCCCAATGCAGCTGGAGTTGTGAACTTCCAGGCTTTCAAGACTCCATGACACGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtctctttggtgggaggggctgtaatgctaaggcatgacccataac Alignment from GeneWise GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG acaatgccctctctaatttagcatctatcatccttccctccctcctgtagGGAGAAGTGGAGTTTGCTCGAATCATGACAATGGTTCGACCCCAATGCAGCTGGAGTTGTGAACTTCCAGGCTTTCAAGACTCCATGACACGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtctctttggtgggaggggctgtaatgctaaggcatgacccataac #### Actn3_ID691_19 --> 0 - 0 Original Alignment GACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCA-CTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from CESAR GACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTC-ACTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Spaln_aa2Genome GACCGG AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATgGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCAC-TCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Spaln_nt2Genome GACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCA-CTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Pairagon GACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCA-CTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Exonerate_protein2genome GACCGG AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTC--ATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCAC---TCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Exonerate_coding2genome GACCGG AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTC--ATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCAC---TCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from GeneWise GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCACTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt #### Actn3_ID692_18 --> 0 - 0 Original Alignment CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACC-CGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTCAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCA-TGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattacacactgcctctctccggccagAAGCGG Alignment from CESAR CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACC-CGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTCAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTC-ATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGG Alignment from Spaln_aa2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTCAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattacacactgcctctctccggccagAAGCGG Alignment from Spaln_nt2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCC-GAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTCAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTC-ATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattacacactgcctctctccggccagAAGCGG Alignment from Pairagon CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCC-GAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTCAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTC-ATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattacacactgcctctctccggccagAAGCGG Alignment from Exonerate_protein2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTCAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattacacactgcctctctccggccagAAGCGG Alignment from Exonerate_coding2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTCAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattacacactgcctctctccggccagAAGCGG Alignment from GeneWise CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTCAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattacacactgcctctctccggccagAAGCGG #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCT-GGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCACGGGCTAGCTGGCTCTCTGGAGGAGCAGA-GGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from CESAR GAAGTAGGACGGCTGGCAGCT-GGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCACGGGCTAGCTGGCTCTCTGGAGGAGCAG-AGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCACGGGCTAGCTGGCTCTCTGGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCT-GGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCACGGGCTAGCTGGCTCTCTGGAGGAGCAGA-GGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Pairagon GAAGTAGGACGGCTGGCAGC-TGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCACGGGCTAGCTGGCTCTCTGGAGGAGCAGA-GGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCACGGGCTAGCTGGCTCTCTGGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCACGGGCTAGCTGGCTCTCTGGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCACGGGCTAGCTGGCTCTCTGGAGGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctgggtgcaaagggggatactggtatttttctactgtgcttgtagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCCAAAGATCTGCCAAACATATGGGCTACGGCCCAAAT-CGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtatgcaacctgggtgtcccctactcattcttgtgcttttactacatgag Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctgggtgcaaagggggatactggtatttttctactgtgcttgtagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCCAAAGATCTGCCAAACATATGGGCTACGGCCCAAAT-CGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtatgcaacctgggtgtcccctactcattcttgtgcttttactacatgag Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctgggtgcaaagggggatactggtatttttctactgtgcttgtagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCCAAAGATCTGCCAAACATATGGGCTACGGCCCAAATCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtatgcaacctgggtgtcccctactcattcttgtgcttttactacatgag Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGAT-CCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctgggtgcaaagggggatactggtatttttctactgtgcttgtagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCCAAAGATCTGCCAAACATATGGGCTACGGCCCAAAT-CGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtatgcaacctgggtgtcccctactcattcttgtgcttttactacatgag Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGA-TCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctgggtgcaaagggggatactggtatttttctactgtgcttgtagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCCAAAGATCTGCCAAACATATGGGCTACGGCCCAAAT-CGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtatgcaacctgggtgtcccctactcattcttgtgcttttactacatgag Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctgggtgcaaagggggatactggtatttttctactgtgcttgtagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCCAAAGATCTGCCAAACATATGGGCTACGGCCCAAATCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtatgcaacctgggtgtcccctactcattcttgtgcttttactacatgag Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctgggtgcaaagggggatactggtatttttctactgtgcttgtagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCCAAAGATCTGCCAAACATATGGGCTACGGCCCAAATCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtatgcaacctgggtgtcccctactcattcttgtgcttttactacatgag Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctgggtgcaaagggggatactggtatttttctactgtgcttgtagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCCAAAGATCTGCCAAACATATGGGCTACGGCCCAAATCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtatgcaacctgggtgtcccctactcattcttgtgcttttactacatgag #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCC-AGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcgatataagtgaggtggggcttggaaatgttctggttcttctcttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGACAACCGTGTAGCTGAACCTCAGCATGAGTGCCATGCAGCACAAGCTGG-AGACTTCCAAGACTATCAACACCTACACAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtaagtccaacagggtatactgcatgttcaagctgtgcctacatgcccac Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCC-AGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcgatataagtgaggtggggcttggaaatgttctggttcttctcttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGACAACCGTGTAGCTGAACCTCAGCATGAGTGCCATGCAGCACAAGCTGG-AGACTTCCAAGACTATCAACACCTACACAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtaagtccaacagggtatactgcatgttcaagctgtgcctacatgcccac Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcgatataagtgaggtggggcttggaaatgttctggttcttctcttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGACAACCGTGTAGCTGAACCTCAGCATGAGTGCCATGCAGCACAAGCTGGAGACTTCCAAGACTATCAACACCTACACAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtaagtccaacagggtatactgcatgttcaagctgtgcctacatgcccac Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACC-CAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcgatataagtgaggtggggcttggaaatgttctggttcttctcttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGACAACCGTGTAGCTGAACCTCAGCATGAGTGCCATGCAGCACAAGCTGGA-GACTTCCAAGACTATCAACACCTACACAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtaagtccaacagggtatactgcatgttcaagctgtgcctacatgcccac Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACC-CAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcgatataagtgaggtggggcttggaaatgttctggttcttctcttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGACAACCGTGTAGCTGAACCTCAGCATGAGTGCCATGCAGCACAAGCTGGA-GACTTCCAAGACTATCAACACCTACACAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtaagtccaacagggtatactgcatgttcaagctgtgcctacatgcccac Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcgatataagtgaggtggggcttggaaatgttctggttcttctcttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGACAACCGTGTAGCTGAACCTCAGCATGAGTGCCATGCAGCACAAGCTGGAGACTTCCAAGACTATCAACACCTACACAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtaagtccaacagggtatactgcatgttcaagctgtgcctacatgcccac Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcgatataagtgaggtggggcttggaaatgttctggttcttctcttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGACAACCGTGTAGCTGAACCTCAGCATGAGTGCCATGCAGCACAAGCTGGAGACTTCCAAGACTATCAACACCTACACAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtaagtccaacagggtatactgcatgttcaagctgtgcctacatgcccac Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcgatataagtgaggtggggcttggaaatgttctggttcttctcttgcagCTGTTAGAGTGGATCCGCCGGACTGTTCTATGGCTAGACAACCGTGTAGCTGAACCTCAGCATGAGTGCCATGCAGCACAAGCTGGAGACTTCCAAGACTATCAACACCTACACAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtaagtccaacagggtatactgcatgttcaagctgtgcctacatgcccac #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTAC-GAACTTCCATACTaggtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTA-CGAACTTCCATACTaggtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGcTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACG-AACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTAC-GAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTAC-GAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from GeneWise -------------------------------------------------GAGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG GCAAAGTGCATCAGTCAGGCCAGATCATAAGTGTATCTTTCTGCTTTTAGAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagaaATAGTTGACGGGAACCTGAAGATGACCCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGG-CATCTCTGTAGAAggtaaggtgatgcaaagtgcatcagtcaggccagatcatgaataattttaa Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagaaATAGTTGACGGGAACCTGAAGATGACCCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAG-GCATCTCTGTAGAAggtaaggtgatgcaaagtgcatcagtcaggccagatcataagtgtatcttt Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCcCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGC-ATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgaataattttaa Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGA-CCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGG-CATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgaataattttaa Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGA-CCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGG-CATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgaataattttaa Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAG--GACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGC---ATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgaataattttaa Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGAC---CCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATG--ACCCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGC-ATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgaataattttaa Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGC-ATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgaataattttaa #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAAT-AAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tatacttcaactcatgaccttcaacatggccactgttgctctctttacaggtGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATCAATGCCCTAGACTTCATAGCTACCAAAGGAG-GAAGTTGGTTGCCATTAGTGCTGAAggtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAA-GCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tatacttcaactcatgaccttcaacatggccactgttgctctctttacaggtGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATCAATGCCCTAGACTTCATAGCTACCAAAGGA-GGAAGTTGGTTGCCATTAGTGCTGAAggtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATCAATGCCCTAGACTTCATAGCTACCAAAGGAGGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAA-GCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATCAATGCCCTAGACTTCATAGCTACCAAAGGAG-GAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAA-GCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATCAATGCCCTAGACTTCATAGCTACCAAAGGAG-GAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATCAATGCCCTAGACTTCATAGCTACCAAAGGAGGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATCAATGCCCTAGACTTCATAGCTACCAAAGGAGGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATCAATGCCCTAGACTTCATAGCTACCAAAGGAGGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt #### Actr1a_ID9872_8 --> 0 - 1 Original Alignment ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCA-GACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCACGACATGGATTTACGGCGTACACTGTTTTCCAACA-TGTTCTCTCAGGAGGTTCTACCCTGTTTAAAggtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from CESAR ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCA-GACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCACGACATGGATTTACGGCGTACACTGTTTTCCAACA-TGTTCTCTCAGGAGGTTCTACCCTGTTTAAAggtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Spaln_aa2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCACGACATGGATTTACGGCGTACACTGTTTTCCAACATGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Spaln_nt2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCA-GACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCACGACATGGATTTACGGCGTACACTGTTTTCCAACA-TGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Pairagon ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCA-GACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCACGACATGGATTTACGGCGTACACTGTTTTCCAACA-TGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Exonerate_protein2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCACGACATGGATTTACGGCGTACACTGTTTTCCAACATGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from Exonerate_coding2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTC---AGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAG--TCACGACATGGATTTACGGCGTACACTGTTTTCCAACAT-GTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca Alignment from GeneWise ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtcacagtctgccaataagtgaaccctttctaacctagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCACGACATGGATTTACGGCGTACACTGTTTTCCAACATGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtaagggtatccacttttgaacgaacgatagaaacaacctgatcaattca #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAG-ATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcaggcATGGACTCAGCAGCATTTGAGCATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCC-ACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from CESAR gcATGGACTTACCCGCCTTTGAG-ATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcaggcATGGACTCAGCAGCATTTGAGCATGGATATCTACAGGAACTTGGGAAGTGTGGACT-TCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Spaln_aa2Genome GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcaggcatggactcagcagCATTTGAGCATGGATATCTACAGGAACTTGGGAAGTGTGGACTT-CCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAG-ATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGCATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCC-ACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Pairagon GCATGGACTTACCCGCCTTTGAG-ATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGCATGGATATCTACAGGAACTTGGGAAGTGTGGACTT-CCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGCATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGCATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from GeneWise GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcaggcatggactcagcagCATTTGAGCATGGATATCTACAGGAACTTGGGAAGTGTGGACTT-CCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAAC-CCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagacTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCCTTCCTGACCCAGTGGCAACAGAGATACT-CTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAAC-CCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagacTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCCTTCCTGACCCAGTGGCAACAGAGAT-ACTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCCTTCCTGACCCAGTGGCAACAGAGATACTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCC-CTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCCTTCCTGACCCAGTGGCAACAGAGATAC-TCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAA-CCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCCTTCCTGACCCAGTGGCAACAGAGATAC-TCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCCTTCCTGACCCAGTGGCAACAGAGATACTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCCTTCCTGACCCAGTGGCAACAGAGATACTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCCTTCCTGACCCAGTGGCAACAGAGATACTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctaggGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGG-TTGGCAGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from CESAR gGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctaggGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTG-GTTGGCAGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Spaln_aa2Genome -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Spaln_nt2Genome GGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGG-TTGGCAGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Pairagon GGCTCAGGAGGTA-AAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGG-TTGGCAGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Exonerate_protein2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccaggtaataggcaacaggtgagtggacttttgttttctagGGCTCAGGAGGTACAAAGAAAGTCCCTTCTTTCATTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtatgtatataatccatagggaatgtgcgttctttggtgccactctcttc #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTG-GAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGCGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGT-AGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTG-GAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGCGGGGGTTTGCTGCAGAGGGACATCAACCGGAGG-TAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAA-GGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGCGGgGGTTTGCTGCAGAGGGACATCAACCGGAGGTA-GGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTG-GAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGCGGGGGTTTGCTGCAGAGGGACATCAACCGGAG-GTAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTG-GAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGCGGGGGTTTGCTGCAGAGGGACATCAACCGGAG-GTAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGCGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGCGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGCGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAACAT-GGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATCGGCCATGTGAGAATCTCCGACTTGAGCCTAG-ATGTGACTTCTCCAAGAAGAGGCCCCACGCTGGGgtgtaagtgcccacatattcacttcactgggcacgttgacattggcaggGGC Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACAT-GGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATCGGCCATGTGAGAATCTCCGACTTGAGCCTA-GATGTGACTTCTCCAAGAAGAGGCCCCACGCTGGGgtgtaagtgcccacatattcacttcattctttttttattttaaatcaggGGC Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATCGGCCATGTGAGAATCTCCGACTTGAGCCTAGATGTGACTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcactgggcacgttgacattggcagGGGC Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGC-CATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATCGGCCATGTGAGAATCTCCGACTTGAGCCTAG-ATGTGACTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcactgggcacgttgacattggcagGGGC Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAACAT-GGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATCGGCCATGTGAGAATCTCCGACTTGAGCCTAG-ATGTGACTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcactgggcacgttgacattggcagGGGC Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATCGGCCATGTGAGAATCTCCGACTTGAGCCTAGATGTGACTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcactgggcacgttgacattggcagGGGC Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATCGGCCATGTGAGAATCTCCGACTTGAGCCTAGATGTGACTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcactgggcacgttgacattggcagGGGC Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacttcccgcttcctctctgttcagCCAGCTAACATTCTCCTAGATGTACATCGGCCATGTGAGAATCTCCGACTTGAGCCTAGATGTGACTTCTCCAAGAAGAGGCCCCACGCTGGGGTgtaagtgcccacatattcacttcactgggcacgttgacattggcagGGGC #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAG-CATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtatgctagtttaggggatggacacctgctctgtccctgcaggtGGGGAACTGCATTATCACTTATCACAGCCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTG-TGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAG-CATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtataatagtttaggggatggacacctgctctgtccctgcaggtGGGGAACTGCATTATCACTTATCACAGCCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTG-TGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAG-CATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtatgctagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGcCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGT-GATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGC-ATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtatgctagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGCCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTG-TGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAG-CATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtatgctagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAGCCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTG-TGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtatgctagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAG------------CCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGTGATATCATCCACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtatgctagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAG------------CCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGTGATATCATCCACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtatgctagtttaggggatggacacctgctctgtccctgcagGTGGGGAACTGCATTATCACTTATCACAG------------CCACGGAGTCTTCTCAGAAGCCGATATGCGTCTCTATGCTGTGATATCATCCACATGCACAATCACTTTGTAGTTTTCAGGGATTTAAAGgtaagttgtagttgatagggcactctttctctaccctccccctactcctc #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTG-TGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGCTGCATGTCATATGCATTCCACACACCAGACA-GCTAAGCTTCATCCTGGACCTTATGAATggtataatagtttaggggatgttaatgtctgatgacatttcaggtGGGGAA Alignment from CESAR GACTGCCCCTTCATCGTG-TGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGCTGCATGTCATATGCATTCCACACACCAG-ACAGCTAAGCTTCATCCTGGACCTTATGAATggtataatagtttaggggatggacacctgctctgtccctgcaggtGGGGAA Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTG-TGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGcTGCATGTCATATGCATTCCACACACCAGACAG-CTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgttaatgtctgatgacatttcagGTGGGGAA Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTG-TGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGCTGCATGTCATATGCATTCCACACACCAGACA-GCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgttaatgtctgatgacatttcagGTGGGGAA Alignment from Pairagon GACTGCCCCTTCATCGTG-TGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGCTGCATGTCATATGCATTCCACACACCAGAC-AGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgttaatgtctgatgacatttcagGTGGGGAA Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGCTGCATGTCATATGCATTCCACACACCAGACAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgttaatgtctgatgacatttcagGTGGGGAA Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGCTGCATGTCATATGCATTCCACACACCAGACAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgttaatgtctgatgacatttcagGTGGGGAA Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGCTGCATGTCATATGCATTCCACACACCAGACAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatgttaatgtctgatgacatttcagGTGGGGAA #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGT-CTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tactgctctgtcttgcagggcatgcttaatgttaacattctctctcataggCATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAG-GACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtaagttgagtggccaagtggactcccactttgtccattttaacctctca Alignment from CESAR gTACGCCATGAAGTGT-CTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tactgctctgtcttgcagggcatgcttaatgttaacattctctctcataggCATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGA-GGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtaagttgagtggccaagtggactcccactttgtccattttaacctctca Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tactgctctgtcttgcagggcatgcttaatgttaacattctctctcataggcatgctaagAGGTGTCCTGGAA------AACAAGAAACGCATCAAGATGAAACAGGGAGG-ACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtaagttgagtggccaagtggactcccactttgtccattttaacctctca Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTC-TGGA---CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tactgctctgtcttgcagggcatgcttaatgttaacattctctctcatagGCATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAG-GACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtaagttgagtggccaagtggactcccactttgtccattttaacctctca Alignment from Pairagon GTACGCCATGAAGTGTCTGG----ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tactgctctgtcttgcagggcatgcttaatgttaacattctctctcatagGCATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAG-GACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtaagttgagtggccaagtggactcccactttgtccattttaacctctca Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tactgctctgtcttgcagggcatgcttaatgttaacattctctctcatagGCATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtaagttgagtggccaagtggactcccactttgtccattttaacctctca Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tactgctctgtcttgcagggcatgcttaatgttaacattctctctcatagGCATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtaagttgagtggccaagtggactcccactttgtccattttaacctctca Alignment from GeneWise GTACGCCATGAAGTGTCTGGACAAGAAACGCATCAAGATGAAGCAG---GGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tactgctctgtcttgcagggcatgcttaatgttaacattctctctcatagGCATGCTAAGAGGTGTCCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtaagttgagtggccaagtggactcccactttgtccattttaacctctca #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACGGAG-CATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTC-AGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAG-CATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCC-CTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacAGCCCTTTTCACAAAACGCTACAGAGCCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCA-GATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGC-ATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCT-CAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Pairagon CCCTTTTCAAAGAATGCTACGGAG-CATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCT-CAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Exonerate_coding2genome atttactattccgttttctttgttcatagttttgtttttttttcccacagcccttttcacaaaacgctacagagccatgtgcaggcccaccttgtgaaaaagcaggtccctcagatctgtttcaagtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAG-AAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGCAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAG-GATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from CESAR ATCAAGAAATATGAG-AAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGCAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGA-GGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Spaln_aa2Genome ATCAAGAAATATGAG-AAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGcAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGG-ATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Spaln_nt2Genome ATCAAGAAATATGAG-AAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGCAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAG-GATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Pairagon ATCAAGAAATATGAG-AAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGCAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAG-GATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGCAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAA---GCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATAT--GAGCAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGG-ATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggtgttttgcttggtgtcttctagATTAAGAAATATGAGCAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGGATCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtaagggctgaatctatccattgctcctagatatgtggggttaaagagac #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCT-GTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tagttaatacagacatactaactttacagccccttaacctggctctgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCGGCATCCCGTACTAAAAAACAGGCCACTCTCTGTCATGGTTATGG-AAAAGGGACTGTCCTGCAGAAAGCCAAGgtgaggtgtcacattccaaattgtagaatgtagcctagcagcccttgctc Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCT-GTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tagttaatacagacatactaactttacagccccttaacctggctctgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCGGCATCCCGTACTAAAAAACAGGCCACTCTCTGTCATGGTTA-TGGAAAAGGGACTGTCCTGCAGAAAGCCAAGgtgaggtgtcacattccaaattgtagaatgtagcctagcagcccttgctc Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tagttaatacagacatactaactttacagccccttaacctggctctgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAGCT---ACACCAGTTAATTCGGCATCCCGTACTAAAAAACAGGCCACTCTCTGTCATGGTTATGGAAAAGGGACTGTCCTGCAGAAAGCCAAGgtgaggtgtcacattccaaattgtagaatgtagcctagcagcccttgctc Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCT-GTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tagttaatacagacatactaactttacagccccttaacctggctctgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTAATTCGGCATCCCGTACTAAAAAACAGGCCACTCTCTGTCATGGTTA-TGGAAAAGGGACTGTCCTGCAGAAAGCCAAGgtgaggtgtcacattccaaattgtagaatgtagcctagcagcccttgctc Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCAT-CTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tagttaatacagacatactaactttacagccccttaacctggctctgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTAATTCGGCATCCCGTACTAAAAAACAGGCCACTCTCTGTCATGGTTAT-GGAAAAGGGACTGTCCTGCAGAAAGCCAAGgtgaggtgtcacattccaaattgtagaatgtagcctagcagcccttgctc Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tagttaatacagacatactaactttacagccccttaacctggctctgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCGGCATCCCGTACTAAAAAACAGGCCACTCTCTGTCATGGTTATGGAAAAGGGACTGTCCTGCAGAAAGCCAAGgtgaggtgtcacattccaaattgtagaatgtagcctagcagcccttgctc Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCT-GTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAGGAATGGG tagttaatacagacatactaactttacagccccttaacctggctctgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCGGCATCCCGTACTAAAAAACAGGCCACTCTCTGTCATGGTTATGGAAAAGGGA-CTGTCCTGCAGAAAGCCAAGGTGAGGTgtcacattccaaattgtagaatgtagcctagcagcccttgctc Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG tagttaatacagacatactaactttacagccccttaacctggctctgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCGGCATCCCGTACTAAAAAACAGGCCACTCTCTGTCATGGTTATGGAAAAGGGACTGTCCTGCAGAAAGCCAAGgtgaggtgtcacattccaaattgtagaatgtagcctagcagcccttgctc #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAG-GCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGCGCAGAGCAGCAGAGAATCTCCTTCCCTGCTA-CTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAG-GCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGCGCAGAGCAGCAGAGAATCTCCTTCCCTGCT-ACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGCGCAGAGCAGCAGAGAATCTCCTTCCCTGCTACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAG-GCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGCGCAGAGCAGCAGAGAATCTCCTTCCCTG-CTACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAG-GCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGCGCAGAGCAGCAGAGAATCTCCTTCCCTGCT-ACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGCGCAGAGCAGCAGAGAATCTCCTTCCCTGCTACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGCGCAGAGCAGCAGAGAATCTCCTTCCCTGCTACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGCGCAGAGCAGCAGAGAATCTCCTTCCCTGCTACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTG-GATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aaatgtaaacctgctggctttttcgggttttagtgtgtgtttcttaacagGTGGAACCAGCTGAGGAAGCAGCT---ACTGTTGATGCCAACAGTGGAAGTGAGCCAGACAGAGTGTACTTGCGAT---ACACCAGTAAAATCTTTCTTGC-TAGTAGCAGAGAGGCTCAGGTACAGACTTCTCTTCCTGCCGTGCCGCATCAGGATGACATAGCTGAGACCCTTACAGTAGACCCAGAGTCCATCACTACCCAAGAGGAGCCCCACACG---GCACCAGGAGACCCTGAGTTGCAGCAAgtgagcgtggtctgcttactaactgtacccatcacctgctctctaggcct Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTG-GATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aaatgtaaacctgctggctttttcgggttttagtgtgtgtttcttaacagGTGGAACCAGCTGAGGAAGCAGCT---ACTGTTGATGCCAACAGTGGAAGTGAGCCAGACAGAGTGTACTTGCGAT---ACACCAGTAAAATCTTTCTTG-CTAGTAGCAGAGAGGCTCAGGTACAGACTTCTCTTCCTGCCGTGCCGCATCAGGATGACATAGCTGAGACCCTTACAGTAGACCCAGAGTCCATCACTACCCAAGAGGAGCCCCACACG---GCACCAGGAGACCCTGAGTTGCAGCAAgtgagcgtggtctgcttactaactgtacccatcacctgctctctaggcct Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aaatgtaaacctgctggctttttcgggttttagtgtgtgtttcttaacagGTGGAACCAGCTGAGGAAGCAGCT---ACTGTTGATGCCAACAGTGGAAGTGAGCCAGACAGAGTGTACTTGCGAT--ACACCAGTAAAATCTTTCTTGCT-AGTAGCAGAGAGGCTCAGGTACAGACTTCTCTTCCTGCCGTGCCGCATCAGGATGACATAGCTGAGACCCTTACAGTAGACCCAGAGTCCATCACTACCCAAGAGGAGCCCCACACG---GCACCAGGAGACCCTGAGTTGCAGCAAgtgagcgtggtctgcttactaactgtacccatcacctgctctctaggcct Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTG-GATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aaatgtaaacctgctggctttttcgggttttagtgtgtgtttcttaacagGTGGAACCAGCTGAGGAAGCAG---CTACTGTTGATGCCAACAGTGGAAGTGAGCCAGACAGAGTGTACTTGCGAT---ACACCAGTAAAATCTTTCTTGC-TAGTAGCAGAGAGGCTCAGGTACAGACTTCTCTTCCTGCCGTGCCGCATCAGGATGACATAGCTGAGACCCTTACAGTAGACCCAGAGTCCATCACTACCCAAGAGGAGCCCCACAC---GGCACCAGGAGACCCTGAGTTGCAGCAAgtgagcgtggtctgcttactaactgtacccatcacctgctctctaggcct Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTG-GATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aaatgtaaacctgctggctttttcgggttttagtgtgtgtttcttaacagGTGGAACCAGCTGAGGAAGCAG---CTACTGTTGATGCCAACAGTGGAAGTGAGCCAGACAGAGTGTACTTGCGAT---ACACCAGTAAAATCTTTCTTGC-TAGTAGCAGAGAGGCTCAGGTACAGACTTCTCTTCCTGCCGTGCCGCATCAGGATGACATAGCTGAGACCCTTACAGTAGACCCAGAGTCCATCACTACCCAAGAGGAGCCCCACACGG---CACCAGGAGACCCTGAGTTGCAGCAAgtgagcgtggtctgcttactaactgtacccatcacctgctctctaggcct Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aaatgtaaacctgctggctttttcgggttttagtgtgtgtttcttaacagGTGGAACCAGCTGAGGAAGCAGCT---ACTGTTGATGCCAACAGTGGAAGTGAGCCAGACAGAGTGTACTTGCGATACACCAGT---AAAATCTTTCTTGCTAGTAGCAGAGAGGCTCAGGTACAGACTTCTCTTCCTGCCGTGCCGCATCAGGATGACATAGCTGAGACCCTTACAGTAGACCCAGAGTCCATCACTACCCAAGAGGAGCCCCACACG---GCACCAGGAGACCCTGAGTTGCAGCAAgtgagcgtggtctgcttactaactgtacccatcacctgctctctaggcct Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aaatgtaaacctgctggctttttcgggttttagtgtgtgtttcttaacagGTGGAACCAGCTGAGGAAGCAGCT---ACTGTTGATGCCAACAGTGGAAGTGAGCCAGACAGAGTGTACTTGCGATACACCAGT---AAAATCTTTCTTGCTAGTAGCAGAGAGGCTCAGGTACAGACTTCTCTTCCTGCCGTGCCGCATCAGGATGACATAGCTGAGACCCTTACAGTAGACCCAGAGTCCATCACTACCCAAGAGGAGCCCCACACG---GCACCAGGAGACCCTGAGTTGCAGCAAgtgagcgtggtctgcttactaactgtacccatcacctgctctctaggcct Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aaatgtaaacctgctggctttttcgggttttagtgtgtgtttcttaacagGTGGAACCAGCTGAGGAAGCAGCT---ACTGTTGATGCCAACAGTGGAAGTGAGCCAGACAGAGTGTACTTGCGATACACCAGT---AAAATCTTTCTTGCTAGTAGCAGAGAGGCTCAGGTACAGACTTCTCTTCCTGCCGTGCCGCATCAGGATGACATAGCTGAGACCCTTACAGTAGACCCAGAGTCCATCACTACCCAAGAGGAGCCCCACACG---GCACCAGGAGACCCTGAGTTGCAGCAAgtgagcgtggtctgcttactaactgtacccatcacctgctctctaggcct #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTC-ATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAA-CATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAggtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from CESAR GCTACACAGCTGGACTCAGCCTTC-ATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCCATCAGGAAGGAGCCCTTTGGTCTGGTGCTA-ACATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAggtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAACATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTC-ATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAA-CATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Pairagon GCTACACAGCTGGACTCAGCCTT-CATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCCATCAGGAAGGAGCCCTTTGGTCTGGTGC-TAACATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAACATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAACATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAACATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGCGTGGATTTGGCCCTGAAGAATCTGCAGACGT-GATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGCGTGGATTTGGCCCTGAAGAATCTGCAGACG-TGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGCGTGGATTTGGCCCTGAAGAATCTGCAGACGTGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGCGTGGATTTGGCCCTGAAGAATCTGCAGACGT-GATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAG-GTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGCGTGGATTTGGCCCTGAAGAATCTGCAGACGT-GATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Exonerate_protein2genome gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagtcaggctttgagtcagacatgagtgagatctttctgtgtgagaatgagcgtggatttggccctgaagaatctgcagacgtgatgaaggatgaacctgtgcccacaaatttagtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGCGTGGATTTGGCCCTGAAGAATCTGCAGACGTGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGCGTGGATTTGGCCCTGAAGAATCTGCAGACGTGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgcctctccatttaccactctctgtttctgtgttcttacagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTGGTCTTGTTCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGA-GATCATACCTTTGGTGGGGGCCATTGCTGCAggtgagggaaattttgagaccacccatttggatgagagtgccccaagaggg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgcctctccatttaccactctctgtttctgtgttcttacagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTGGTCTTGTTCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTG-AGATCATACCTTTGGTGGGGGCCATTGCTGCAggtgagggaaattttgagaccacccatttggatgagagtgccccaagaggg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgcctctccatttaccactctctgtttctgtgttcttacagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTGGTCTTGTTCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGAGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagggaaattttgagaccacccatttggatgagagtgccccaagaggg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgcctctccatttaccactctctgtttctgtgttcttacagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTGGTCTTGTTCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGA-GATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagggaaattttgagaccacccatttggatgagagtgccccaagaggg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgcctctccatttaccactctctgtttctgtgttcttacagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTGGTCTTGTTCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGA-GATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagggaaattttgagaccacccatttggatgagagtgccccaagaggg Alignment from Exonerate_protein2genome ccattcatctgcctctccatttaccactctctgtttctgtgttcttacagctcacaaagcttagctcagctttcatccggaaagagccctttggtcttgttcttcatcattgcaccctggaattatcctgtgaacttgagatcatacctttggtgggggccattgctgcaggtgagggaaattttgagaccacccatttggatgagagtgccccaagaggg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgcctctccatttaccactctctgtttctgtgttcttacagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTGGTCTTGTTCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGAGA-TCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagggaaattttgagaccacccatttggatgagagtgccccaagaggg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgcctctccatttaccactctctgtttctgtgttcttacagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTGGTCTTGTTCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGAGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagggaaattttgagaccacccatttggatgagagtgccccaagaggg #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCC-TGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGG-CCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTggtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCC-TGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGG-CCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTggtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTATGAT---GATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGG-CCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGG-CCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGG-CCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGG-CCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCC-TGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTG--GCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGC---CCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCC-TGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTG--GCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGC---CCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGA aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGgtgctgtattggtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAG-GAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgtgtggcatcaatcaggccgactttgcatgtatttattattccagccCCAACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAGCGAGGAGATCTTTGGGCCCATCCTGCCTTTGGTGACTGTGA-AAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaagttggtgatgagaccataagtagcctgcaaatagtgaatcgaggta Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAG-GAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgtgtggcatcaatcaggccgactttgcatgtatttattattccagccCCAACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAGCGAGGAGATCTTTGGGCCCATCCTGCCTTTGGTGACTGTGA-AAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaagttggtgatgagaccataagtagcctgcaaatagtgaatcgaggta Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAG-GAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgtgtggcatcaatcaggccgactttgcatgtatttattattccagCCCCAACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAGcGAGGAGATCTTTGGGCCCATCCTGCCTTTGGTGACTGTGAA-AGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaagttggtgatgagaccataagtagcctgcaaatagtgaatcgaggta Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAG-GAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgtgtggcatcaatcaggccgactttgcatgtatttattattccagCCCCAACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAGCGAGGAGATCTTTGGGCCCATCCTGCCTTTGGTGACTGTGA-AAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaagttggtgatgagaccataagtagcctgcaaatagtgaatcgaggta Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAG-GAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgtgtggcatcaatcaggccgactttgcatgtatttattattccagCCCCAACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAGCGAGGAGATCTTTGGGCCCATCCTGCCTTTGGTGACTGTGA-AAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaagttggtgatgagaccataagtagcctgcaaatagtgaatcgaggta Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAG-GAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTG--AGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgtgtggcatcaatcaggccgactttgcatgtatttattattccagCCCCAACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAGCGAGGAGATCTTTGGGCCCATCCTGCCTTTGGTGACTGTGAA---AGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaagttggtgatgagaccataagtagcctgcaaatagtgaatcgaggta Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGA---GGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgtgtggcatcaatcaggccgactttgcatgtatttattattccagCCCCAACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAG--CGAGGAGATCTTTGGGCCCATCCTGCCTTTGGTGACTGTGAA-AGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaagttggtgatgagaccataagtagcctgcaaatagtgaatcgaggta Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAG-GAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgtgtggcatcaatcaggccgactttgcatgtatttattattccagCCCCAACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAGCGAGGAGATCTTTGGGCCCATCCTGCCTTTGGTGACTGTGAA-AGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtaagttggtgatgagaccataagtagcctgcaaatagtgaatcgaggta #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAG-GACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGCGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTG-GACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from CESAR CACGACATTGAGCAGGAG-GACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGCGACCCCCAAGGGCAGACCCCATTGGAGCTTGCT-GGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGCGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTGGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAG-GGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGCGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTG-GACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Pairagon CACGACATTGAGCAGGAG-GACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGCGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTG-GACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGCGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTGGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from Exonerate_coding2genome AAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttcCAGCATGACATTGAGCAGGAGCGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTGGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcgttggtcctcttgtctgatgtattatcattctatgtgccctcttccagCATGACATTGAGCAGGAGCGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTGGACTTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtaagctgctaggtagtgcttccctacttgtgaatggtgcccacaggact #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGC-AAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATG-CAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCcACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCA-AAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTT-ACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGC-AAAAACTCCAGCACAATT---TGCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAGCCCT-TACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGC-AAAAACTCCAGCACAATT---TGCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTAC---AGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTC--CACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCA-AAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCG-GGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCACGGATTTGCGATTGCCCTGCCCTTGCTATTGG-TAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCG-GGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCACGGATTTGCGATTGCCCTGCCCTTGCTATTG-GTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCACGGATTTGCGATTGCCCTGCCCTTGCTATTGGTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCG-GGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCACGGATTTGCGATTGCCCTGCCCTTGCTATTGG-TAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCG-GGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCACGGATTTGCGATTGCCCTGCCCTTGCTATTGG-TAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCACGGATTTGCGATTGCCCTGCCCTTGCTATTGGTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCACGGATTTGCGATTGCCCTGCCCTTGCTATTGGTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCACGGATTTGCGATTGCCCTGCCCTTGCTATTGGTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc #### Best1_ID2630_9 --> 1 - 1 Original Alignment cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTA-GGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg acaccaggttcccagtgagagcaagttgacccatccttggctctccccagtCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTACGGCCTAGAACCAAAAAACTACCATCTTCCCT-GAAAGACCTAAAGACCAAGCTATTGTGTACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAggtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from CESAR cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTA-GGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg acaccaggttcccagtgagagcaagttgacccatccttggctctccccagtCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTACGGCCTAGAACCAAAAAACTACCATCTTC-CCTGAAAGACCTAAAGACCAAGCTATTGTGTACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAggtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Spaln_aa2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTACGGCCTAGAACCAAAAAACTACCATCTTCCCTGAAAGACCTAAAGACCAAGCTATTGTGTACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Spaln_nt2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTA-GGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTACGGCCTAGAACCAAAAAACTACCATCTTCCC-TGAAAGACCTAAAGACCAAGCTATTGTGTACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGG---TGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Pairagon CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTA-GGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTACGGCCTAGAACCAAAAAACTACCATCTTCCC-TGAAAGACCTAAAGACCAAGCTATTGTGTACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGG---TGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Exonerate_protein2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTACGGCCTAGAACCAAAAAACTACCATCTTCCCTGAAAGACCTAAAGACCAAGCTATTGTGTACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Exonerate_coding2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTACGGCCTAGAACCAAAAAACTACCATCTTCCCTGAAAGACCTAAAGACCAAGCTATTGTGTACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from GeneWise CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTACGGCCTAGAACCAAAAAACTACCATCTTCCCTGAAAGACCTAAAGACCAAGCTATTGTGTACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTAC-ACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC------CACGGCTGCCTCAGCCAGGTCTCGCCGGCATT-ATTCATGGGATCTACCTTCAATCTCaggtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATC--CCC---ACGGCTGCCTCAGCCAGGTCTCGCCGGCAT-TATTCATGGGATCTACCTTCAATCTCaggtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCCC-----ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTA-TTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCC-----CCACGGCTGCCTCAGCCAGGTCTCGCCGGCATT-ATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCC-----CCACGGCTGCCTCAGCCAGGTCTCGCCGGCATT-ATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC------CACGGCTGCCTCAGCCAGGTCTCGCCGGCATTATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCC-----CACGGCTGCCTCAGCCAGGTCTCGCCGGCATTA-TTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCATCCCCACGGCTGCCTCAGCCAGGTCTCGCCGGCATTA------TTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGT-GATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ccacagctggaacaatagtctagagtctctctctccccattcctgcacagaATGATTCTCTCAAGTCGACCAGCAGCTTTTGTTCAAGAAGTTGGCTC-GTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGggtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from CESAR aATGGTTCTCTCGAGT-GATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ccacagctggaacaatagtctagagtctctctctccccattcctgcacagaATGATTCTCTCAAGTCGACCAGCAGCTTTTGTTCAAGAAGTTGGCT-CGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGggtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGT-GATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTcGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCG-TACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGT-GATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTCGACCAGCAGCTTTTGTTCAAGAAGTTGGCTC-GTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Pairagon AATGGTTCTCTCGAGT-GATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTCGACCAGCAGCTTTTGTTCAAGAAGTTGGCTC-GTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTCGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTCGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTCGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagGGCCAA---CCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAG-GGAGGAGCGAGAGCCAGACGCTGGTGATggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from CESAR agGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagGGCCAA---CCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGA-GGGAGGAGCGAGAGCCAGACGCTGGTGATggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAACCAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCT---GAATGGAGGGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAAC---CAGAAGAGCGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGG-GAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Pairagon AGGGCC---------AGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAACCAGAAGAGC-----------GAGAAAGCAAAGAAGTGGCCCCTGAATGGAG-GGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Exonerate_protein2genome cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagggccaaccagaagagcgagaaagcaaagaagtggcccctgaatggagggaggagcgagagccagacgctggtgatggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAACCAGAAGAG--CGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGG-GAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from GeneWise cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagggccaaccagaagagcgagaaagcaaagaagtggcccctgaatggagggaggagcgagagccagacgctggtgatggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATT-CTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagcTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCC-ATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACtggtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATT-CTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagcTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCC-ATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACtggtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTC-TCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACAT---GGCTGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCA-TCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATT-CTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACAT---GGCTGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCA-TCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG tgagctccctagtgttcatctggaccctgtgccctgtgcttggctcacagCTACTTGCTGCACATTTACATG---GCTGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCTTACCCATCCCCTGGGATGGATGGTGAAATGTTACAAAATATAAAATCTGGACTACAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaatggaatgataccctggtcccttggcaaattatggccttaatgcact #### Cabp2_ID289_4 --> 2 - 1 Original Alignment agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCC-TGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCCTGCATGCAGACACTGGGCTACATGCCCACAGAGA-GGAGCTCATTGAGATATCACAACAGGTTagtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from CESAR agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCC-TGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCCTGCATGCAGACACTGGGCTACATGCCCACAGAG-AGGAGCTCATTGAGATATCACAACAGGTTagtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Spaln_aa2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCCTGCATGCAGACACTGGGCTACATGCCCACAGAGAGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Spaln_nt2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGC-CTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCCTGCATGCAGACACTGGGCTACATGCCCACAGAGAG-GAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Pairagon AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTG-CCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCCTGCATGCAGACACTGGGCTACATGCCCACAGAGA-GGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Exonerate_protein2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCCTGCATGCAGACACTGGGCTACATGCCCACAGAGAGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from Exonerate_coding2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagaggctgggccgtcctctgcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCCTGCATGCAGACACTGGGCTACATGCCCACAGAGAGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt Alignment from GeneWise AGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA ttgcccccttgtagcaaccagggtgaaagagGCTGGGCCGTCCTCTGCAGAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACAGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCCTGCATGCAGACACTGGGCTACATGCCCACAGAGAGGAGCTCATTGAGATATCACAACAGGTTAgtgagtggttaccctatggcccagtggacatagcccttaggcagatgtgt #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTT-GAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccaggtGGTGGAAAGGTTCACTTTCGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTAC-AGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTT-GAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccaggtGGTGGAAAGGTTCACTTTCGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTA-CAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTCGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTT-GAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTCGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTAC-AGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Pairagon GTGGTGGGAAGGTGGA-TTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTCGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTAC-AGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTCGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTCGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTCGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAG-CTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gaagatactgcaaggtgcactgtttggatgctgtacacttctccacgcagTTTGACAAGGAGGACAGGGATGGATGGATCATGGTGGTGGAGCCTGCGCCAGGCTGTTCCAGCTCTGCAAGGG------G-AGAAGGTACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtgagaaaccctacatccccctcatgcatacgtgtatactgtgaagatct Alignment from CESAR TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAG-CTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gaagatactgcaaggtgcactgtttggatgctgtacacttctccacgcagTTTGACAAGGAGGACAGGGATGGATGGATCATGGTGGTGGAGCCTGCGCCAGGCTGTTCCAGCTCTGCAAGGGG-A------GAAGGTACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtgagaaaccctacatccccctcatgcatacgtgtatactgtgaagatct Alignment from Spaln_aa2Genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gaagatactgcaaggtgcactgtttggatgctgtacacttctccacgcagTTTGACAAGGAGGACAGGGATGGATGGATCATGGTGGTGGAGCCTGCGCCAGGCTGTTCCAGCTCTGCAAGGGGA------GAAGGTACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtgagaaaccctacatccccctcatgcatacgtgtatactgtgaagatct Alignment from Spaln_nt2Genome TTTGACAAGGA---CAGGGATGGACGGATCACGGTGGCGGAGC-TGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACG gaagatactgcaaggtgcactgtttggatgctgtacacttctccacgcagTTTGACAAGGAGGACAGGGATGGATGGATCATGGTGGTGGAGCCTGCGCCAGGCTGTTCCAGCTCTGCAAGGGG-------AGAAGGTACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtgagaaaccctacatccccctcatgcatacgtgtatactgtgaagatct Alignment from Pairagon TTTGACA---AGGACAGGGATGGACGGATCACGGTGGCGGAG-CTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT---AGACTTTGACG gaagatactgcaaggtgcactgtttggatgctgtacacttctccacgcagTTTGACAAGGAGGACAGGGATGGATGGATCATGGTGGTGGAGCCTGCGCCAGGCTGTTCCAGCTCTGCAAGGGG-------AGAAGGTACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtgagaaaccctacatccccctcatgcatacgtgtatactgtgaagatct Alignment from Exonerate_protein2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gaagatactgcaaggtgcactgtttggatgctgtacacttctccacgcagTTTGACAAGGAGGACAGGGATGGATGGATCATGGTGGTGGAG------CCTGCGCCAGGCTGTTCCAGCTCTGCAAGGGGAGAAGGTACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtgagaaaccctacatccccctcatgcatacgtgtatactgtgaagatct Alignment from Exonerate_coding2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC gaagatactgcaaggtgcactgtttggatgctgtacacttctccacgcagTTTGACAAGGAGGACAGGGATGGATGGATCATGGTGGTGGAG------CCTGCGCCAGGCTGTTCCAGCTCTGCAAGGGGAGAAGGTACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAgagtttgatggtgagaaaccctacatccccctcatgcatacgtgtatactgtgaagatct Alignment from GeneWise TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTA---GAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGAC---------GAGTTTGTAATGATGCTATCTACAGGC gaagatactgcaaggtgcactgtttggatgctgtacacttctccacgcagTTTGACAAGGAGGACAGGGATGGATGGATCATGGTGGTGGAG---------CCTGCGCCAGGCTGTTCCAGCTCTGCAAGGGGAGAAGGTACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGGTGAGAAACCCTACATCCCCCTCATGCATACGTGTatactgtgaagatct #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgacgaaggatgcttaagccaaagcagttctctacctgttcactgggcagCGAGATGGAAATGGGCAAGCTAGGGCTGGTGGAATTCAACATCCTATGGAACC-TATCCGAAATTATCTGgtaagggatgggatgctctctggcatgttccctgggagcccattggaaat Alignment from CESAR CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgacgaaggatgcttaagccaaagcagttctctacctgttcactgggcagCGAGATGGAAATGGGCAAGCTAGGGCTGGTGGAATTCAACATCCTATGGAAC-CTATCCGAAATTATCTGgtaagggatgggatgctctctggcatgttccctgggagcccattggaaat Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgacgaaggatgcttaagccaaagcagttctctacctgttcactgggcagcgagATGGAA---ATGGGCAAGCTAGGGCTGGTGGAATTCAACATCCTATGGAACCT-ATCCGAAATTATCTGgtaagggatgggatgctctctggcatgttccctgggagcccattggaaat Alignment from Spaln_nt2Genome CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgacgaaggatgcttaagccaaagcagttctctacctgttcactgggcagCGAGATGGAAATGGGCAAGCTAGGGCTGGTGGAATTCAACATCCTATGGAACC-TATCCGAAATTATCTGgtaagggatgggatgctctctggcatgttccctgggagcccattggaaat Alignment from Pairagon CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgacgaaggatgcttaagccaaagcagttctctacctgttcactgggcagCGAGATGGAAATGGGCAAGCTAGGGCTGGTGGAATTCAACATCCTATGGAACC-TATCCGAAATTATCTGgtaagggatgggatgctctctggcatgttccctgggagcccattggaaat Alignment from Exonerate_protein2genome CGAGATGGCAAC-GGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAAC--CGCATCCGAAATTACCTG tgacgaaggatgcttaagccaaagcagttctctacctgttcactgggcagCGAGATGGAAATGGGCAAGCTAGGGCTGGTGGAATTCAACATCCTATGGAACCT---ATCCGAAATTATCTGgtaagggatgggatgctctctggcatgttccctgggagcccattggaaat Alignment from Exonerate_coding2genome tgacgaaggatgcttaagccaaagcagttctctacctgttcactgggcagcgagatggaaatgggcaagctagggctggtggaattcaacatcctatggaacctatccgaaattatctggtaagggatgggatgctctctggcatgttccctgggagcccattggaaat Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgacgaaggatgcttaagccaaagcagttctctacctgttcactgggcagcgagATGGAA---ATGGGCAAGCTAGGGCTGGTGGAATTCAACATCCTATGGAACCT-ATCCGAAATTATCTGgtaagggatgggatgctctctggcatgttccctgggagcccattggaaat #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttttgaggcacatcaaacaaggcccaagtagatcttttttttccctgtagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAA-AGACATCTGCCAGGGAGCACTAggtgagtagacatccctagggatagggtgccgggtgacttgagctatgctc Alignment from CESAR GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttttgaggcacatcaaacaaggcccaagtagatcttttttttccctgtagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGA-AAGACATCTGCCAGGGAGCACTAggtgagtagacatccctagggatagggtgccgggtgacttgagctatgctc Alignment from Spaln_aa2Genome GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacatcaaacaaggcccaagtagatcttttttttccctgtagGAATTGATGTCAcAACCCCCAATTCATTGTAGATGGAGCCACCCGAAA-GACATCTGCCAGGGAGCACTAGgtgagtagacatccctagggatagggtgccgggtgacttgagctatgctc Alignment from Spaln_nt2Genome GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacatcaaacaaggcccaagtagatcttttttttccctgtagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCC-GAAAGACATCTGCCAGGGAGCACTAGgtgagtagacatccctagggatagggtgccgggtgacttgagctatgctc Alignment from Pairagon GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacatcaaacaaggcccaagtagatcttttttttccctgtagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAA-AGACATCTGCCAGGGAGCACTAGgtgagtagacatccctagggatagggtgccgggtgacttgagctatgctc Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacatcaaacaaggcccaagtagatcttttttttccctgtagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAAAGACATCTGCCAGGGAGCACTAGgtgagtagacatccctagggatagggtgccgggtgacttgagctatgctc Alignment from Exonerate_coding2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacatcaaacaaggcccaagtagatcttttttttccctgtagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAAAGACATCTGCCAGGGAGCACTAGgtgagtagacatccctagggatagggtgccgggtgacttgagctatgctc Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttttgaggcacatcaaacaaggcccaagtagatcttttttttccctgtagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAAAGACATCTGCCAGGGAGCACTAGgtgagtagacatccctagggatagggtgccgggtgacttgagctatgctc #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTG-AGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGCAGGGTGGCGCTG---CAGTGTGGCCTGGAAG-CGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTggtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTG-AGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGCAGGGTGGCGCTG---CAGTGTGGCCTGGAA-GCGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTggtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGCAGGGTGGCGCTGCAGTGTGG---CCTGGAAGCGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTG-AGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGCAGGGTGGCGCTG---CAGTGTGGCCTGGAAGCGG-GGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGG---CCAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTG-AGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGCAGGGTGGCGCTG---CAGTGTGGCCTGGAAGCGG-GGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTG---GCCAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGCAGGGTGGC---GCTGCAGTGTGGCCTGGAAGCGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGCAG--GGTGGCGCTGCAGTGTGGCCTGGAAGCGGG-GCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGCAGGGTGGCGCTGCA---GTGTGGCCTGGAAGCGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg #### Carns1_ID386_6 --> 2 - 0 Original Alignment CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT-ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtgagttgtactttgttctgtttgtctctgtcaggaGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from CESAR CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT-ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtaaggtgtactttgttctgtttgtctctgtcaggaGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATCCAGGGT-GCAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Spaln_aa2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagttgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATCCAGGGTGCAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Spaln_nt2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT-ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagttgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Pairagon CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCG-TATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagttgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Exonerate_protein2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagttgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATCCAGGGTGCAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from Exonerate_coding2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagttgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACCATGTGTGCAGTGGTGTGTCAGATCCAGGGTGCAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg Alignment from GeneWise CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTG---CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgagttgtactttgttctgtttgtctctgtcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACCATGTGTGCAGTGGTGTGTCAGAT---CCAGGGTGCAGGCCCCTCCTCAGCAAGgtacttggtggatgccatcctgtccaacccccattcaggctagcccggtg #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTG-CTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTG-CCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactctaacatcccatgtgattgcaggaGGTCCTCCACCTGG Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTG-CTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTG-CCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactttgttctgtttgtctctgtcaggaGGTCCTCCACCTGG Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactctaacatcccatgtgattgcagGAGGTCCTCCACCTGG Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGC-TGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGC-CTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactctaacatcccatgtgattgcagGAGGTCCTCCACCTGG Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTG-CTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTG-CCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactctaacatcccatgtgattgcagGAGGTCCTCCACCTGG Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactctaacatcccatgtgattgcagGAGGTCCTCCACCTGG Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactctaacatcccatgtgattgcagGAGGTCCTCCACCTGG Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGCCTTGTGGAGCCAATTTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactctaacatcccatgtgattgcagGAGGTCCTCCACCTGG #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATT-CTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg caaatatagatatggaggacaggatggggttgttctattttatgttctaggcTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGG-GGGTGGGGTTCAAAGCCCTggtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaagc Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATT-CTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg caaatatagatatggaggacaggatggggttgttctattttatgttctaggcTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTG-GGGGTGGGGTTCAAAGCCCTggtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaagc Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagatatggaggacaggatggggttgttctattttatgttctagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaagc Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTC-TGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagatatggaggacaggatggggttgttctattttatgttctagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGG-GGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaagc Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATT-CTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagatatggaggacaggatggggttgttctattttatgttctagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGG-GGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaagc Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagatatggaggacaggatggggttgttctattttatgttctagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaagc Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagatatggaggacaggatggggttgttctattttatgttctagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaagc Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagatatggaggacaggatggggttgttctattttatgttctagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCCTAGGTTCTCTCAGCACCTTCCTATCACTGTTGCTGGGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaagc #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTG-GACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagaaTGGTACTTCATGGTCTTACGACTCCATCTTCCTCACCATCTTTGTATTAGAAG-AGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGggtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from CESAR aaTGGTACTTCATGGTCTTG-GACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagaaTGGTACTTCATGGTCTTACGACTCCATCTTCCTCACCATCTTTGTATTAGAA-GAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGggtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTG-GACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAcGACTCCATCTTCCTCACCATCTTTGTATTAGAAGA----GTCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTG-GACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTACGACTCCATCTTCCTCACCATCTTTGTATTAGAAG-AG---TCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Pairagon AATGGTACTTCATGGTCTTG-GACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTACGACTCCATCTTCCTCACCATCTTTGTATTAGAAG----AGTCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTA---CGACTCCATCTTCCTCACCATCTTTGTATTAGAAGAGTCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTA---CGACTCCATCTTCCTCACCATCTTTGTATTAGAAGAGTCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTA---CGACTCCATCTTCCTCACCATCTTTGTATTAGAAGAGTCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTC-------CGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggactggcacacatcctaatgcccccccttcttttttcagacTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCA-ACGGGTTCTTAGGAGGCTCaggtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGC------CTGTTC-CGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggactggcacacatcctaatgcccccccttcttttttcagacTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCC-AACGGGTTCTTAGGAGGCTCaggtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTC-------CGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCcCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCAA-CGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGG-------ATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCAAC-GGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGG-------ATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCA-ACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATT------CTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCAACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATT------CTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCAACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATT------CTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCAACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGAC-CCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagtcCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCA-CCTGTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGAC-CCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagtcCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCA-CCTGTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGAC-CCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACcCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCAC-CTGTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGA-CCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCA-CCTGTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGA-CCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCA-CCTGTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCTGTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCTGTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTC---CAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCAC---CTGTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga #### Cbwd1_ID5354_13 --> 0 - 0 Original Alignment AATCTCCTGTGGGAA-AAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGGAACAAGAATGTAAAAAACAAGGATGGTCGCTGCATGGAGG-AATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from CESAR AATCTCCTGTGGGAA-AAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGGAACAAGAATGTAAAAAACAAGGATGGTCGCTGCATGGAG-GAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Spaln_aa2Genome AATCTCCTGTGGGAA-AAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGGAAcAAGAATGTAAAAAACAAGGATGGTCGCTGCATGGAGGA-ATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Spaln_nt2Genome AATCTCCTGTGGGAA-AAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGGAACAAGAATGTAAAAAACAAGGATGGTCGCTGCATGGAGG-AATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Pairagon AATCTCCTGTGGGAA-AAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGGAACAAGAATGTAAAAAACAAGGATGGTCGCTGCATGGAGG-AATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Exonerate_protein2genome AATCTCCTGTGGGAA-AAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAA ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGGAACAAGAATGTAAAAAACAAGGATGGTCGCTGCATGGAGGAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from Exonerate_coding2genome AATCTCCTGTGGGAA-AAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAA ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGGAACAAGAATGTAAAAAACAAGGATGGTCGCTGCATGGAGGAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt Alignment from GeneWise AATCTCCTGTGGGAAAAGAACGTGAAAAACAAGGACGGCCACTGCATGGAGGTCATTCGGCTAAAG ctcatgcatattgtttcactagcaatttgggtctcctgcctcctctctagAATCTGTTGTGGGAACAAGAATGTAAAAAACAAGGATGGTCGCTGCATGGAGGAATTCAGCTAAGGgtgaactgttctatccgctcatgtgctttagggagaagatatctgttagt #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGAT-GAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg tttgctatgttgtgatgacccctcctgcacgattctttcacctttttcagggTCATCATCACCAGCACCCATGCACCAAATCCAGAGCTCTCTCTGCTTGGGAGATCGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCA-TTCTCAGTTCCCTGTGGGTCGAAGTCCAGCATCATTCAGCCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTAAGTACCTATAGCAAAggtatcgcatattttcctaagattgaagttgccattgtttcaagtggttgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGAT-GAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg tttgctatgttgtgatgacccctcctgcacgattctttcacctttttcagggTCATCATCACCAGCACCCATGCACCAAATCCAGAGCTCTCTCTGCTTGGGAGATCGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTC-ATTCTCAGTTCCCTGTGGGTCGAAGTCCAGCATCATTCAGCCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTAAGTACCTATAGCAAAggtatcgcatattttcctaagattgaagttgccattgtttcaagtggttgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tttgctatgttgtgatgacccctcctgcacgattctttcacctttttcagGGTCATCATCACCAGCACCCATGCACCAAATCCAGAGCTCTCTCTGCTTGGGAGATCGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCATTCTCAGTTCCCTGTGGGTCGAAGTCCAGCATCATTCAGCCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTAAGTACCTATAGCAAAGgtatcgcatattttcctaagattgaagttgccattgtttcaagtggttgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGAT-GAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tttgctatgttgtgatgacccctcctgcacgattctttcacctttttcagGGTCATCATCACCAGCACCCATGCACCAAATCCAGAGCTCTCTCTGCTTGGGAGATCGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAT-TCTCAGTTCCCTGTGGGTCGAAGTCCAGCATCATTCAGCCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTAAGTACCTATAGCAAAGgtatcgcatattttcctaagattgaagttgccattgtttcaagtggttgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGAT-GAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tttgctatgttgtgatgacccctcctgcacgattctttcacctttttcagGGTCATCATCACCAGCACCCATGCACCAAATCCAGAGCTCTCTCTGCTTGGGAGATCGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCA-TTCTCAGTTCCCTGTGGGTCGAAGTCCAGCATCATTCAGCCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTAAGTACCTATAGCAAAGgtatcgcatattttcctaagattgaagttgccattgtttcaagtggttgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tttgctatgttgtgatgacccctcctgcacgattctttcacctttttcagGGTCATCATCACCAGCACCCATGCACCAAATCCAGAGCTCTCTCTGCTTGGGAGATCGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCATTCTCAGTTCCCTGTGGGTCGAAGTCCAGCATCATTCAGCCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTAAGTACCTATAGCAAAGgtatcgcatattttcctaagattgaagttgccattgtttcaagtggttgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tttgctatgttgtgatgacccctcctgcacgattctttcacctttttcagGGTCATCATCACCAGCACCCATGCACCAAATCCAGAGCTCTCTCTGCTTGGGAGATCGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCATTCTCAGTTCCCTGTGGGTCGAAGTCCAGCATCATTCAGCCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTAAGTACCTATAGCAAAGgtatcgcatattttcctaagattgaagttgccattgtttcaagtggttgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tttgctatgttgtgatgacccctcctgcacgattctttcacctttttcagGGTCATCATCACCAGCACCCATGCACCAAATCCAGAGCTCTCTCTGCTTGGGAGATCGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCATTCTCAGTTCCCTGTGGGTCGAAGTCCAGCATCATTCAGCCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTAAGTACCTATAGCAAAGgtatcgcatattttcctaagattgaagttgccattgtttcaagtggttgg #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTG-GCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cttagccgtctctttcttttaagcttttccctctgctgtgctttggttaggAAGGGCAGCTGGTTGCGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTG-GGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACCGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtacagttaagcgtctaacagccagaatatccctgggtgaggtttaacgc Alignment from CESAR gAAGGGCAGCTGGCTG-GCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cttagccgtctctttcttttaagcttttccctctgctgtgctttggttaggAAGGGCAGCTGGTTGCGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGT-GGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACCGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtacagttaagcgtctaacagccagaatatccctgggtgaggtttaacgc Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTG-GCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccgtctctttcttttaagcttttccctctgctgtgctttggttagGAAGGGCAGCTGGTTGcGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGG-GGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACCGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtacagttaagcgtctaacagccagaatatccctgggtgaggtttaacgc Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTG-GCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccgtctctttcttttaagcttttccctctgctgtgctttggttagGAAGGGCAGCTGGTTGCGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTG-GGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACCGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtacagttaagcgtctaacagccagaatatccctgggtgaggtttaacgc Alignment from Pairagon GAAGGGCAGCTGGCTG-GCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccgtctctttcttttaagcttttccctctgctgtgctttggttagGAAGGGCAGCTGGTTGCGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTG-GGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACCGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtacagttaagcgtctaacagccagaatatccctgggtgaggtttaacgc Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccgtctctttcttttaagcttttccctctgctgtgctttggttagGAAGGGCAGCTGGTTGCGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACCGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtacagttaagcgtctaacagccagaatatccctgggtgaggtttaacgc Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccgtctctttcttttaagcttttccctctgctgtgctttggttagGAAGGGCAGCTGGTTGCGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACCGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtacagttaagcgtctaacagccagaatatccctgggtgaggtttaacgc Alignment from GeneWise GCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccgtctctttcttttaagcttttccctctgctgtgctttggttaggaagggcagCTGGTTGCGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGG-GGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACCGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtacagttaagcgtctaacagccagaatatccctgggtgaggtttaacgc #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTG-GAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtaagtacacttagggtcagactgacactattctataactaggGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGCGAG---ATCATGGACCAGTACCGTGTACTAG-GCCTGGGCCCCTACCCCATACTaagtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from CESAR GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtgagtacacttagggtcagactgacactattctataactaggGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTG--CGAGATCATGGACCAGTACCGTGTACTA-GGCCTGGGCCCCTACCCCATACTaagtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Spaln_aa2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCC---CGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGC--GAGATCATGGACCAGTACCGTGTACTAGGCCTGGGCCCCTACCCCATACTAAGTGAgctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Spaln_nt2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTG--CGAGATCATGGACCAGTACCGTGTACTAG-GCCTGGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Pairagon GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTG-GAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGCGAG---ATCATGGACCAGTACCGTGTACTAG-GCCTGGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Exonerate_protein2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTG---CGAGATCATGGACCAGTACCGTGTACTAGGCCTGGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from Exonerate_coding2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTG--CGAGATCATGGACCAGTACCGTGTACTAGG-CCTGGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc Alignment from GeneWise GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtacacttagggtcagactgacactattctataactagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTG---CGAGATCATGGACCAGTACCGTGTACTAGGCCTGGGCCCCTACCCCATACTAAgtgagctagtaccttgtggatcctgttagtatttcgccctgtcctacccc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGC-GCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTCGTACAAGAGGAGGAGAACAGGCAGCTTTTAG-AGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTATctgtgagtacacttagggtcagtactcttcttttccccctacaggGACCAAC Alignment from CESAR CTTCTGACCCAGCTTCGCAGC-GCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTCGTACAAGAGGAGGAGAACAGGCAGCTTTTA-GAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTATctgtgagtacacttagggtcagactgacactattctataactaggGACCAAC Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTCGTACAAGAGGAGGAGAACAGGCAGCTTTTAGAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagtactcttcttttccccctacagGGACCAAC Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAG-CGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTCGTACAAGAGGAGGAGAACAGGCAGCTTTTAG-AGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagtactcttcttttccccctacagGGACCAAC Alignment from Pairagon CTTCTGACCCAGCTTCGCAG-CGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTCGTACAAGAGGAGGAGAACAGGCAGCTTTTAG-AGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagtactcttcttttccccctacagGGACCAAC Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTCGTACAAGAGGAGGAGAACAGGCAGCTTTTAGAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagtactcttcttttccccctacagGGACCAAC Alignment from Exonerate_coding2genome ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagcttctaacacagctccgtactcgtacaagaggaggagaacaggcagcttttagagaggtgaaggctttaagtcgaacaaacagggagttgcaggagcgtagtttggagagtgaccctctgcaccgtgagcagccagagtatctgtgagtacacttagggtcagtactcttcttttccccctacagggaccaac Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTCGTACAAGAGGAGGAGAACAGGCAGCTTTTAGAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagtactcttcttttccccctacagGGACCAAC #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAG-CTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCCTGCGTGTGCGGGAGTCCAACCAACAATTGG-CCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAG-CTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCCTGCGTGTGCGGGAGTCCAACCAACAATTG-GCCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAG------TTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCCTGCGTGTGCGGGAGTCCAACCAACAATTGGCCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGC-------TGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCCTGCGTGTGCGGGAGTCCAACCAACAATTGG-CCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGC-------TGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCCTGCGTGTGCGGGAGTCCAACCAACAATTGG-CCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAG------TTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCCTGCGTGTGCGGGAGTCCAACCAACAATTGGCCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAG------TTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCCTGCGTGTGCGGGAGTCCAACCAACAATTGGCCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAG------TTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCCTGCGTGTGCGGGAGTCCAACCAACAATTGGCCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc #### Ccdc88b_ID1829_20 --> 1 - 2 Original Alignment gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTG-ATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGCATGCAGGATGGGCATCGGCAGCGTGGTCTGGATG-GGAGCTGCGCAGACTCCATAACGAGCATCAGaggtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from CESAR gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTG-ATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGCATGCAGGATGGGCATCGGCAGCGTGGTCTGGAT-GGGAGCTGCGCAGACTCCATAACGAGCATCAGaggtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Spaln_aa2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGCATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGGGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Spaln_nt2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTG-ATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGCATGCAGGATGGGCATCGGCAGCGTGGTCTGGATG-GGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Pairagon GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTG-ATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGCATGCAGGATGGGCATCGGCAGCGTGGTCTGGATG-GGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Exonerate_protein2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTG-ATGCAGGATGGACATCGGCAGCGCGGCCTGGAG--GAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGCATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGG---GAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from Exonerate_coding2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTG-ATGCAGGATGGACATCGGCAGCGCGGCCTGGAG--GAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGCATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGG---GAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca Alignment from GeneWise GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcctatgctccccccaaatgtgtatgtcctacagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGCATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGGGAGCTGCGCAGACTCCATAACGAGCATCAGAGgtgagtactttggttcaggcctatccccccaccctggcatagcattctca #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAG-GGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGTTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGCGGCCGTGCACAGGAGTTGCTTCTACAGA-TCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAG-GGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGTTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGCGGCCGTGCACAGGAGTTGCTTCTACAG-ATCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGTTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGCGGCCGTGCACAGGAGTTGCTTCTACAGATCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAG-GGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGTTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGCGGCCGTGCACAGGAGTTGCTTCTACAGA-TCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAG-GGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGTTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGCGGCCGTGCACAGGAGTTGCTTCTACAGA-TCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGTTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGCGGCCGTGCACAGGAGTTGCTTCTACAGATCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGTTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGCGGCCGTGCACAGGAGTTGCTTCTACAGATCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat Alignment from GeneWise AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttaacaactttctgttctcttccagAATGCCACATTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGTTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGCGGCCGTGCACAGGAGTTGCTTCTACAGATCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgagctgcggtgtggacacaacttcctgcttactaacatcaat #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGAC-CTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CCTT---GCTGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGA-ACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG--CCTTGCTGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGA-ACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CCTTGCTGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGAACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG--CCTTG---CTGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGA-ACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG--CCTTG---CTGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGA-ACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTGCCT---TGCTGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGAACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_coding2genome cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagctgcatcagtgcccggtgccttgctggggcacggcgggatggcccttgggccgtggagaacaaaatgggcggctcattgtagtagagcaaaatgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTGCCT---TGCTGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGAACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAG-AATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGCAATGTGGAGTTGGAGCTGGAACTGCAGAGAA-TCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAG-AATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGCAATGTGGAGTTGGAGCTGGAACTGCAGA-GAATCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGCAATGTGGAGTTGGAGCTGGAACTGCAGAGAATCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGA-ATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGCAATGTGGAGTTGGAGCTGGAACTGCAGAGA-ATCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAG-AATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGCAATGTGGAGTTGGAGCTGGAACTGCAGA-GAATCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGCAATGTGGAGTTGGAGCTGGAACTGCAGAGAATCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGCAATGTGGAGTTGGAGCTGGAACTGCAGAGAATCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGCAATGTGGAGTTGGAGCTGGAACTGCAGAGAATCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt #### Ccdc88b_ID1838_11 --> 0 - 0 Original Alignment GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTA-GAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCT-AGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from CESAR GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTA-GAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGC-TAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Spaln_aa2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Spaln_nt2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTA-GAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCT-AGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Pairagon GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGC-TAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCT-AGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Exonerate_protein2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Exonerate_coding2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from GeneWise GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTCGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTAGCAAGACTGCATGAAACCCAGAGGGAAAATCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGC-CTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactagcacacattggcttgtttgtagACTCAGGCACTCTCTGCCCAAGCAAAGTGCGCAGAGCTCTGCCGTGAAGAAGCAGAGGCACTAAAA---GAGGCTGGTCACCCTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTG-GAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagatgggctacaccagagccagagacaaactatttggtaatgtcact Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGC-CTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactagcacacattggcttgtttgtagACTCAGGCACTCTCTGCCCAAGCAAAGTGCGCAGAGCTCTGCCGTGAAGAAGCAGAGGCACTAAAAGAG---GCTGGTCACCCTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGT-GGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagatgggctacaccagagccagagacaaactatttggtaatgtcact Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGC-CTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactagcacacattggcttgtttgtagACTCAGGCACTCTCTGCCCAAGCAAAGTGCGCAGAGCTCTGCCGTGAAGAAGCAGAGGCACTAAAAGAG---GCTGGTCACcCTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGG-AAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagatgggctacaccagagccagagacaaactatttggtaatgtcact Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCC-TGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactagcacacattggcttgtttgtagACTCAGGCACTCTCTGCCCAAGCAAAGTGCGCAGAGCTCTGCCGTGAAGAAGCAGAGGCACTAAAAGA---GGCTGGTCACCCTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTG-GAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagatgggctacaccagagccagagacaaactatttggtaatgtcact Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACT--------------GCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactagcacacattggcttgtttgtagACTCAGGCACTCTCTGCCCAAGCAAAGTGCGCAGAGCTCTGCCGTGAAGAAGCAGAGGCACTAAAAGAGGCTGGTCAC----------------CCTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTG-GAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagatgggctacaccagagccagagacaaactatttggtaatgtcact Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGC-CTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGC--GAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactagcacacattggcttgtttgtagACTCAGGCACTCTCTGCCCAAGCAAAGTGCGCAGAGCTCTGCCGTGAAGAAGCAGAGGCACTAAAAGAG---GCTGGTCACCCTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGG---AAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagatgggctacaccagagccagagacaaactatttggtaatgtcact Alignment from Exonerate_coding2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactagcacacattggcttgtttgtagACTCAGGCACTCTCTGCCCAAGCAAAGTGCGCAGAGCTCTGCCGTGAAGAAGCAGAGGCACTAAAAGAGGCTGGT--CACCCTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCG-TGGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagatgggctacaccagagccagagacaaactatttggtaatgtcact Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactagcacacattggcttgtttgtagACTCAGGCACTCTCTGCCCAAGCAAAGTGCGCAGAGCTCTGCCGTGAAGAAGCAGAGGCACTAAAAGAGGCTGGTC--ACCCTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGG-AAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagatgggctacaccagagccagagacaaactatttggtaatgtcact #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTCTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGT-TGAACCCTTCTCAggtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from CESAR GAGGAGCTACAGCTGCTG-ATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTCTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGG-TTGAACCCTTCTCAggtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTCTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGA-TCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTCTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGT-TGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Pairagon GAGGAGCTACAGCTGC-TGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTCTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGT-TGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Exonerate_protein2genome GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTCTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Exonerate_coding2genome GAGGAGCTACAGCTG-CTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCA acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCTTCTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from GeneWise -CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCC-------------------------------------------------------- acccagtagcacctattatggatatattattcttgaaaccgtatttgcaggaggagctacagCTTCTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTTGAACCCTTCTCAGGTAGGAGTTCTTGCTCTTTTCTACCATTTGACTCTGTTATATATCCTCAT #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCT-GCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagcGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTCGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGC-ATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCT-GCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagcGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTCGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGG-CATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCT-GCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTcGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCA-TTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCT-GCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTCGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGC-ATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCT-GCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTCGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGC-ATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCT-GCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCA gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTCGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCT-GCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCA gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTCGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGT-CCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAGTTCGTATGGTCAGGGGGCGGGATGGTACTCGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCA-TTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAG-GAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGCGAGGAAGAAGGGGCTCTTTGTACGGAAAAAA-ATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTatgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAG-GAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGCGAGGAAGAAGGGGCTCTTTGTACGGAAA-AAAATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTatgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGCGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAG-GAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGCGAGGAAGAAGGGGCTCTTTGTACGGA-AAAAAATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAG-GAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGCGAGGAAGAAGGGGCTCTTTGTACGGA-AAAAAATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGCGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGCGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGCGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct catggctaattaagtgttccattgtagatctccccctgtaatccacacagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCCTGTCTCCAACATGGCCGACAAGACTACACT-TTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATGGAACGGTTATTGctgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGT-CTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct catggctaattaagtgttccattgtagatctccccctgtaatccacacagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCCTGTCTCCAACATGGCCGACAAGACTACAC-TTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATGGAACGGTTATTGctgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCCTGTCTCCAACATGGCCGACAAGACTACACTTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTC-TGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCCTGTCTCCAACATGGCCGACAAGACTACA-CTTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCG-TCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCCTGTCTCCAACATGGCCGACAAGACTACACT-TTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCCTGTCTCCAACATGGCCGACAAGACTACACTTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCCTGTCTCCAACATGGCCGACAAGACTACACTTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT catggctaattaagtgttccattgtagatctccccctgtaatccacacagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTCTTCAAGGATTATACTTCGCCCTGTCTCCAACATGGCCGACAAGACTACACTTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATGGAACGGTTATTGCTgtatagagagcctcatagtcgaagtcaaaccgctggagacggctacccac #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTC-TAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagcttgtacacatgtactcctgg Alignment from CESAR GTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTT-CTAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcttataattccatcttttt Alignment from Spaln_aa2Genome GGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcaggttattgtggtgagGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCT-AAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagcttgtacacatgtactcctgg Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGC-AGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTC-TAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagcttgtacacatgtactcctgg Alignment from Pairagon GTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTC-TAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagcttgtacacatgtactcctgg Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCTAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagcttgtacacatgtactcctgg Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCTAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagcttgtacacatgtactcctgg Alignment from GeneWise GGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcaggttattgtggtgagGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCT-AAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagcttgtacacatgtactcctgg #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTT-CTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCGAGATGTTCTTAGTGAAGGGAGACCACTGTTGGGTGACAG-TTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTA-GTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCGAGATGTTCTTAGTGAAGGGAGACCACTGTTGGGTGACAG-TTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCGAGATGTTCTTAGTGAAGGGAGACCACTGTTGGGTGACAGTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTC-TAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCGAGATGTTCTTAGTGAAGGGAGACCACTGTTGGGTGACAGTT-TGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTC-TAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCGAGATGTTCTTAGTGAAGGGAGACCACTGTTGGGTGACAG-TTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCGAGATGTTCTTAGTGAAGGGAGACCACTGTTGGGTGACAGTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCGAGATGTTCTTAGTGAAGGGAGACCACTGTTGGGTGACAGTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ctttggcacaaaaacgcaaaatgtagctcttataattccatctttttcagACAACCTGTCTCCGGGAAGAGCGAGATGTTCTTAGTGAAGGGAGACCACTGTTGGGTGACAGTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaaaccttgtttcatagaggggtgttaccctgacagtgctgttctt #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagagCACCTGCATGGTCCACTACCAACCACAGGAGCTTGTGCATCTTCAGAAAG-AGTTCAGGTTCTTCAGGAGAAACTGGCGggtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from CESAR agCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagagCACCTGCATGGTCCACTACCAACCACAGGAGCTTGTGCATCTTCAGAAAG-AGTTCAGGTTCTTCAGGAGAAACTGGCGggtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACCAACCACAGGAGCTTGTGCATCTTCAGAAAGAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTAC-AGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACCAACCACAGGAGCTTGTGCATCTTCAGAAAG-AGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Pairagon AGCCCCTGCATGGCCCATTA-CAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACCAACCACAGGAGCTTGTGCATCTTCAGAAAG-AGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACCAACCACAGGAGCTTGTGCATCTTCAGAAAGAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACCAACCACAGGAGCTTGTGCATCTTCAGAAAGAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACCAACCACAGGAGCTTGTGCATCTTCAGAAAGAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCT-AGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTCAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGG-GAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCT-AGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTCAGAAGCCCTGCCCCAAACATCCAGTTACAGCAG-GGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCT-AGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTcAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGG-AAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCT-AGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTCAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGG-GAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCT-AGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTCAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGG-GAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTCAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTCAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTCAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGG-CTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCCTGTGGGAAGCCCAGGAGAGAGAATCTG-TGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGG-CTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCCTGTGGGAAGCCCAGGAGAGAGAATCTG-TGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCCTGTGGGAAGCCCAGGAGAGAGAATCTGTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGG-CTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCCTGTGGGAAGCCCAGGAGAGAGAATCTG-TGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGG-CTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCCTGTGGGAAGCCCAGGAGAGAGAATCTG-TGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCCTGTGGGAAGCCCAGGAGAGAGAATCTGTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCCTGTGGGAAGCCCAGGAGAGAGAATCTGTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCCTGTGGGAAGCCCAGGAGAGAGAATCTGTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAG-GCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccctgacttctcaaacctcaaccctttccttctttgtttggctctagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGCACCCAACTGAGGAAGGAAGTAGTAGCCCTAA-GGAGCAACTGGAACATGCCTGCAGCCAAgggtgttcgcatggtagttgctgccaggaaggggcaaggtaagatcaccctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAG-GCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccctgacttctcaaacctcaaccctttccttctttgtttggctctagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGCACCCAACTGAGGAAGGAAGTAGTAGCCCTAA-GGAGCAACTGGAACATGCCTGCAGCCAAgggtgttcgcatggtagttgctgccaggaaggggcaaggtaagatcaccctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaacctcaaccctttccttctttgtttggctctagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGCACCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGAGCAACTGGAACATGCCTGCAGCCAAGGgtgttcgcatggtagttgctgccaggaaggggcaaggtaagatcaccctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGG-CCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaacctcaaccctttccttctttgtttggctctagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGCACCCAACTGAGGAAGGAAGTAGTAGCCCT-AAGGAGCAACTGGAACATGCCTGCAGCCAAGGgtgttcgcatggtagttgctgccaggaaggggcaaggtaagatcaccctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAG-GCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaacctcaaccctttccttctttgtttggctctagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGCACCCAACTGAGGAAGGAAGTAGTAGCCCT-AAGGAGCAACTGGAACATGCCTGCAGCCAAGGgtgttcgcatggtagttgctgccaggaaggggcaaggtaagatcaccctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaacctcaaccctttccttctttgtttggctctagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGCACCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGAGCAACTGGAACATGCCTGCAGCCAAGGgtgttcgcatggtagttgctgccaggaaggggcaaggtaagatcaccctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaacctcaaccctttccttctttgtttggctctagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGCACCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGAGCAACTGGAACATGCCTGCAGCCAAGGgtgttcgcatggtagttgctgccaggaaggggcaaggtaagatcaccctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaacctcaaccctttccttctttgtttggctctagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGCACCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGAGCAACTGGAACATGCCTGCAGCCAAGGgtgttcgcatggtagttgctgccaggaaggggcaaggtaagatcaccctg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaagatcaccctggcattccactctctctgtcctcctctccccacagaATCAGTGTCGGGAAAAAGCGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGC-GCTGAGTCGAGAGCAGGAGTGGgtaagtatgaaatatgacaaagcagaggttgctgccagctgggtgggtca Alignment from CESAR gATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaagatcaccctggcattccactctctctgtcctcctctccccacagaATCAGTGTCGGGAAAAAGCGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGC-GCTGAGTCGAGAGCAGGAGTGGgtaagtatgaaatatgacaaagcagaggttgctgccagctgggtgggtca Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaagatcaccctggcattccactctctctgtcctcctctccccacagAATCAGTGTCGGGAAAAAGCGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCGCTGAGTCGAGAGCAGGAGTGGgtaagtatgaaatatgacaaagcagaggttgctgccagctgggtgggtca Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaagatcaccctggcattccactctctctgtcctcctctccccacagAATCAGTGTCGGGAAAAAGCGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGC-GCTGAGTCGAGAGCAGGAGTGGgtaagtatgaaatatgacaaagcagaggttgctgccagctgggtgggtca Alignment from Pairagon GATCAGTGTTGGGAAAGAG-GAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaagatcaccctggcattccactctctctgtcctcctctccccacagAATCAGTGTCGGGAAAAAGCGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGC-GCTGAGTCGAGAGCAGGAGTGGgtaagtatgaaatatgacaaagcagaggttgctgccagctgggtgggtca Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaagatcaccctggcattccactctctctgtcctcctctccccacagAATCAGTGTCGGGAAAAAGCGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCGCTGAGTCGAGAGCAGGAGTGGgtaagtatgaaatatgacaaagcagaggttgctgccagctgggtgggtca Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaagatcaccctggcattccactctctctgtcctcctctccccacagAATCAGTGTCGGGAAAAAGCGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCGCTGAGTCGAGAGCAGGAGTGGgtaagtatgaaatatgacaaagcagaggttgctgccagctgggtgggtca Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaagatcaccctggcattccactctctctgtcctcctctccccacagAATCAGTGTCGGGAAAAAGCGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCGCTGAGTCGAGAGCAGGAGTGGgtaagtatgaaatatgacaaagcagaggttgctgccagctgggtgggtca #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAG-AGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGA-TGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAG-AGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGAG-ATGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGATGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAG-AGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGA-TGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAG-AGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGA-TGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGATGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGATGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGATGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCCACCCCTGTCTTG-GCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttaggGACCCCCAGTTTTCAGCCACTCCTGTCTTGCGCCCCAGATGTCATTCATGCCCAATCAAAGGACC-GCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTG-GCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttaggGACCCCCAGTTTTCAGCCACTCCTGTCTTGCGCCCCAGATGTCATTCATGCCCAATCAAAGGAC-CGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTGTCTTGCGCCCCAGATGTCATTCATGCCCAATCAAAGGACCGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTG-GCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTGTCTTGCGCCCCAGATGTCATTCATGCCCAATCAAAGGACC-GCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Pairagon GGACCCCCAGTTCTCAGCCACCCCTGTCTTG-GCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTGTCTTGCGCCCCAGATGTCATTCATGCCCAATCAAAGGACC-GCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTGTCTTGCGCCCCAGATGTCATTCATGCCCAATCAAAGGACCGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTGTCTTGCGCCCCAGATGTCATTCATGCCCAATCAAAGGACCGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tagggagtccacaccagggtggtctctcttgctatttatttctattttagGGACCCCCAGTTTTCAGCCACTCCTGTCTTGCGCCCCAGATGTCATTCATGCCCAATCAAAGGACCGCCACGTATCTTCAGGgtgagtacaccgggtgatatagccttcatgtctccacccatgcatgagta #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCAC-CTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ctcatcgtcagctatttaccttccaacaatcttccctatctaccgtccagaGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCACCAACTTCATCCACCCTGGTTCATGTGGGGCATACAGAGGGGAGACCCA-CACTAGGGATGGGACCCGCgtgggtcttgtgcaggtgattgctaaacatgtcacacggcttcaatcatg Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCAC-CTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ctcatcgtcagctatttaccttccaacaatcttccctatctaccgtccagaGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCACCAACTTCATCCACCCTGGTTCATGTGGGGCATACAGAGGGGAGAC-CCACACTAGGGATGGGACCCGCgtgggtcttgtgcaggtgattgctaaacatgtcacacggcttcaatcatg Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ctcatcgtcagctatttaccttccaacaatcttccctatctaccgtccagAGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCACCAACTTCATCCACCCTGGTTCATGTGGGGCATACAGAGGGGAGACCCACACTAGGGATGGGACCCGCgtgggtcttgtgcaggtgattgctaaacatgtcacacggcttcaatcatg Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACC-TGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ctcatcgtcagctatttaccttccaacaatcttccctatctaccgtccagAGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCACCAACTTCATCCACCCTGGTTCATGTGGGGCATACAGAGGGGAGACCC-ACACTAGGGATGGGACCCGCgtgggtcttgtgcaggtgattgctaaacatgtcacacggcttcaatcatg Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCA-CCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ctcatcgtcagctatttaccttccaacaatcttccctatctaccgtccagAGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCACCAACTTCATCCACCCTGGTTCATGTGGGGCATACAGAGGGGAGACCC-ACACTAGGGATGGGACCCGCgtgggtcttgtgcaggtgattgctaaacatgtcacacggcttcaatcatg Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ctcatcgtcagctatttaccttccaacaatcttccctatctaccgtccagAGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCACCAACTTCATCCACCCTGGTTCATGTGGGGCATACAGAGGGGAGACCCACACTAGGGATGGGACCCGCgtgggtcttgtgcaggtgattgctaaacatgtcacacggcttcaatcatg Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ctcatcgtcagctatttaccttccaacaatcttccctatctaccgtccagAGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCACCAACTTCATCCACCCTGGTTCATGTGGGGCATACAGAGGGGAGACCCACACTAGGGATGGGACCCGCgtgggtcttgtgcaggtgattgctaaacatgtcacacggcttcaatcatg Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ctcatcgtcagctatttaccttccaacaatcttccctatctaccgtccagAGAGATGCTGAAGGACCCCTTTGTGCGCTTCAAATTCATCTCACCACCCACCAACTTCATCCACCCTGGTTCATGTGGGGCATACAGAGGGGAGACCCACACTAGGGATGGGACCCGCgtgggtcttgtgcaggtgattgctaaacatgtcacacggcttcaatcatg #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGC-TTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTG-TCGTCTCCCAGGCCGAACAGACCCAtgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGC-TTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGT-GTCGTCTCCCAGGCCGAACAGACCCAtgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGTCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCT-TCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTG-TCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAG-CTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTG-TCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGTCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGTCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGTCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACG-GACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCC-GCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACG-GACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCC-GCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACG-GACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCcGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGCCC-ACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACG-GACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCC-GCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACA-CGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCC-GCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACG-GACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGC-CCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAagtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from CESAR GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGA-GTGGAGGTTTAGAAagtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTcCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT-GGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTT-TGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Pairagon GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGA--GATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT---GGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGA--GATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT---GGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from GeneWise aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagggactgagtaaatcaacctctcctggtgcacctgtctcttgcaaattgcccaattggagtggaggtttagaaagtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCC-CTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaaggGCCCCTGTAAATGCCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACG-GATCAAGAGGAAGCTGACAggtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from CESAR gGCCCCCGAGAATGCACCC-CTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaaggGCCCCTGTAAATGCCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGAC-GGATCAAGAGGAAGCTGACAggtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCC-CTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCcCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGG-ATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCC-TCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACG-GATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Pairagon GGCCCCCGAGAATG-CACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACG-GATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGA-CCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcaggtGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAG-AGAAAAAGGGGATAAAggtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from CESAR gtGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcaggtGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAA-GAGAAAAAGGGGATAAAggtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Spaln_aa2Genome GGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAA---G ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcaggtgacagGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGAGAAAAAGGGGATAAAGGTAAgtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAA-GAGAAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Pairagon GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAA-GAGAAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAA ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGAGAAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAA ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGAGAAAAAGGGGATAAAGgtaagtagtggagtgtgaactggggtgccggggcttaggttctgaaaact Alignment from GeneWise GGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAGGT- ttttgcctcttactcatccttaggtgtttgctgcctttgaattctcgcaggtgacagGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGAGAAAAAGGGGATAAAGGTAAgtagtggagtgtgaactggggtgccggggcttaggttctgaaaact #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCA-GGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccGCGAGTTTGTCGTCCACCCCACGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGC-TCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAagtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCA-GGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccGCGAGTTTGTCGTCCACCCCACGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGG-CTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAagtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCACGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCA-GGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCACGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGG-CTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCA-GGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCACGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGG-CTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCA-GGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGG--CCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCACGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCT---CCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCA-GGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGG--CCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCACGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCT---CCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from GeneWise -----------ATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccgcgagTTTGTCGTCCACCCCACGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCT-CCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg accagagttctctggaaattcttcttactgactctgcatcctccccacaggtGCTGGCATTAGTTTTGGACATCCTCGGCCCACCT---------------GCTGGAACATCTT-TGAAGAGTTACTGTCCATGCTTAAAggtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from CESAR gtTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg accagagttctctggaaattcttcttactgactctgcatcctccccacaggtGCTGGCATTAGTTTTGGACATCCTCGGCCCACCT---------------GCTGGAACAT-CTTTGAAGAGTTACTGTCCATGCTTAAAggtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTCGGCCCACCTGC---------------TGGAACATCTTTGAAGAGTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTCGGCCCACCTG---------------CTGGAACAT-CTTTGAAGAGTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Pairagon GTTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTCGGCCCACCTG---------------CTGGAACATCTT-TGAAGAGTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Exonerate_protein2genome GTTCTGGGATCAGCTTTGGGCATCCT-GGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTA accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTCGGCCCACCTGCTGGAACATCTTTGAAGAGTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Exonerate_coding2genome accagagttctctggaaattcttcttactgactctgcatcctccccacaggtgctggcattagttttggacatcctcggcccacctgctggaacatctttgaagagttactgtccatgcttaaaggtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTCGGCCC---------------ACCTGCTGGAACATCTTTGAAGAGTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGG-CCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acacacacattgggctcattgactctaatttttttttttttttttcccaggaAACGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGG-CCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acacacacattgggctcattgactctaatttttttttttttttttcccaggaAACGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGG-CCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGcCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCC-ACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGG-CCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGT-CCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGT-CCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCA-CCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acacacacattgggctcattgactctaatttttttttttttttttcccagGAAACGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagcagtcaggagtaataacctcactgaggttgccgaggttgcctctt #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACTCTGTACATGCAG-GGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa taccctacttttggtgacatactgagtctgtatatttttctttttgaaagggGCATCATCAAGCACTCTGTACATGCAGCGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTC-AGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAG-GGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa taccctacttttggtgacatactgagtctgtatatttttctttttgaaagggGCATCATCAAGCACTCTGTACATGCAGCGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTC-AGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGCGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAG-GGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGCGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCT-CAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Pairagon GGGCGTCATCAAGCACTCTGTACATGCAG-GGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGCGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCT-CAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGCGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGCGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from GeneWise GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGCGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAA-AAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtataaaaacagtacacttaagttattttgttcttgtattttagctTCCTTCTCAGAAGAGACACTGAAACAAGGAGAAGCAGGCTGCGTATGCTGCTG-CACCTGTCTCAAGGCAGATGTGAATggtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAA-AAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtataaaaacagtacacttaagttattttgttcttgtattttagctTCCTTCTCAGAAGAGACACTGAAACAAGGAGAAGCAGGCTGCGTATGCTGCT-GCACCTGTCTCAAGGCAGATGTGAATggtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGAGAAGCAGGCTGCGTATGCTGCTGCACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAG-GAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGAGAAGCAGGCTGCGTATGCTGCTG-CACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAA-AAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGAGAAGCAGGCTGCGTATGCTGCTG-CACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGAGAAGCAGGCTGCGTATGCTGCTGCACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGAGAAGCAGGCTGCGTATGCTGCTGCACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAACAAGGAGAAGCAGGCTGCGTATGCTGCTGCACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGT-TCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGG-TTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGT-TCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGT-TCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGG--TGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTT---CCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGG--TGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTT---CCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTT-CCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAG-CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACCGTGTGGGTATTACTACTTGGCACCCTACAGCCC-GATCGTGCTTCTTGGTGCTggtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC---AAG----CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACCGTGTGGGTATTACTACTTGGCACCCTACAGCCCGA-TCGTGCTTCTTGGTGCTggtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAG-------CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGT---GCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTG---ACTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGAcCGTGTGGGTATTACTACTTGGCACCCTACAGCCCGATCGTGCTTCTTGGTGCTGGTGAgcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA-------AGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGA---CTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACCGTGTGGGTATTACTACTTGGCACCCTACAGCCCG-ATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATAC-------CAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGA---CTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACCGTGTGGGTATTACTACTTGGCACCCTACAGCCCG-ATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC---AAG----CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCA caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACCGTGTGGGTATTACTACTTGGCACCCTACAGCCCGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC---AAG----CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCA caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACCGTGTGGGTATTACTACTTGGCACCCTACAGCCCGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC---AAGCGC---GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACCGTGTGGGTATTACTACTTGGCACCCTACAGCCCGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCAC-AATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccagtatgtgtcgggctaattgaaaaaaagatttatcttttctaaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCCTATAATGTGAGCTGGAACCACCATTGGCAGCTTCTTTTGTTCAGCCTGCAAAG-CAAGAGTGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtactaacaagtgggaaatagttcgtcattcaacttcaaggccttgatcc Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAAT-GGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccagtatgtgtcgggctaattgaaaaaaagatttatcttttctaaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCCTATAATGTGAGCTGGAACCACCATTGGCAGCTTCTTTTGTTCAGCCTGCAAA-GCAAGAGTGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtactaacaagtgggaaatagttcgtcattcaacttcaaggccttgatcc Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccagtatgtgtcgggctaattgaaaaaaagatttatcttttctaagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCCTATAATGTGAGCTGGAACCACCATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGCAAGAGTGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtactaacaagtgggaaatagttcgtcattcaacttcaaggccttgatcc Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAAT-GGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccagtatgtgtcgggctaattgaaaaaaagatttatcttttctaagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCCTATAATGTGAGCTGGAACCACCATTGGCAGCTTCTTTTGTTCAGCCTGCAAAG-CAAGAGTGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtactaacaagtgggaaatagttcgtcattcaacttcaaggccttgatcc Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAA-TGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccagtatgtgtcgggctaattgaaaaaaagatttatcttttctaagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCCTATAATGTGAGCTGGAACCACCATTGGCAGCTTCTTTTGTTCAGCCTGCAAAG-CAAGAGTGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtactaacaagtgggaaatagttcgtcattcaacttcaaggccttgatcc Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccagtatgtgtcgggctaattgaaaaaaagatttatcttttctaagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCCTATAATGTGAGCTGGAACCACCATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGCAAGAGTGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtactaacaagtgggaaatagttcgtcattcaacttcaaggccttgatcc Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccagtatgtgtcgggctaattgaaaaaaagatttatcttttctaagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCCTATAATGTGAGCTGGAACCACCATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGCAAGAGTGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtactaacaagtgggaaatagttcgtcattcaacttcaaggccttgatcc Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccaccagtatgtgtcgggctaattgaaaaaaagatttatcttttctaagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAAGAGCTGTACCGTTTGGACAGTTTGCATCCTGACCTTGCCTATAATGTGAGCTGGAACCACCATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGCAAGAGTGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtactaacaagtgggaaatagttcgtcattcaacttcaaggccttgatcc #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCC-CAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCT-AGCAGTCAGCAAGTGTGAAATAGCCaggtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAA-CCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGG-GCTAGCAGTCAGCAAGTGTGAAATAGCCaggtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAA-CCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTAGCA-GTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAA-CCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTAGCA-GTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGT-GCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttctagattgccatgttctgtccactccaccccagatGCAGAGGACACACGGGTGCCTGGTCGCACTCCTCTACACAGTAACTGCCTGTGCGGTCCTGCTGT-TGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGT-GCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttctagattgccatgttctgtccactccaccccagatGCAGAGGACACACGGGTGCCTGGTCGCACTCCTCTACACAGTAACTGCCTGTGCGGTCCTGCTG-TTGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTCGCACTCCTCTACACAGTAACTGCCTGTGCGGTCCTGCTGTTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGT-GCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTCGCACTCCTCTACACAGTAACTGCCTGTGCGGTCCTGCTGT-TGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGT-GCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTCGCACTCCTCTACACAGTAACTGCCTGTGCGGTCCTGCTGT-TGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGT-GCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTG--TGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTCGCACTCCTCTACACAGTAACTGCCTGTGCGGTCCTGCTGTT---GCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Exonerate_coding2genome acatgaacagattacttctagattgccatgttctgtccactccaccccagatgcagaggacacacgggtgcctggtcgcactcctctacacagtaactgcctgtgcggtcctgctgttgcactggtgctcggagtgacttgtaggaggtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTC---CTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTCGCACTCCTCTACACAGTAACTGCCTGTGCGGTCCTGCTGTT---GCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGC-CCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGG-AGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTggtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCC-GCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGG-AGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTggtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCC-GCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCG-GGAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCC-GCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCG-GGAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACC-GTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagagCGTCTTGGTCCTCCACGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGTACCCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGG-AGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACC-GTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagagCGTCTTGGTCCTCCACGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGTACCCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTG-GAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGTACCCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCA-CCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGTACCCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTG-GAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCA-CCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGC---------------------------------------------------- aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGTACCCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTG-GAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAGTATTTTAGAGCTTCTTCTTTCTGGGAAAGCATAGGGGATGCTATGCCAA Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACC-GTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTG--ACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGTACCCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGA---GCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACC-GTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTG--ACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGTACCCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGA---GCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from GeneWise ---CTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagagCGTCTTGGTCCTCCACGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGTACCCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGC-GAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac acagtagtagtagtggattccacccaagcatatgatttctcttgattcaggcACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTCGAGATTCGAGCTTCACGCTTCCTTTCCTGTG-TTGGCGAGAAGGGCCAGCAGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAacgtgtgatgtaaactcccagctgtctgtccatagtgcattgctactatttt Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGC-GAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac acagtagtagtagtggattccacccaagcatatgatttctcttgattcaggcACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTCGAGATTCGAGCTTCACGCTTCCTTTCCTGT-GTTGGCGAGAAGGGCCAGCAGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAacgtgtgatgtaaactcccagctgtctgtccatagtgcattgctactatttt Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagtagtagtagtggattccacccaagcatatgatttctcttgattcagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTCGAGATTCGAGCTTCACGCTTCCTTTCCTGTGTTGGCGAGAAGGGCCAGCAGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtgtgatgtaaactcccagctgtctgtccatagtgcattgctactatttt Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTG-CGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagtagtagtagtggattccacccaagcatatgatttctcttgattcagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTCGAGATTCGAGCTTCACGCTTCCTTTCCTGTG-TTGGCGAGAAGGGCCAGCAGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtgtgatgtaaactcccagctgtctgtccatagtgcattgctactatttt Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTG-CGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagtagtagtagtggattccacccaagcatatgatttctcttgattcagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTCGAGATTCGAGCTTCACGCTTCCTTTCCTGTGT-TGGCGAGAAGGGCCAGCAGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtgtgatgtaaactcccagctgtctgtccatagtgcattgctactatttt Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagtagtagtagtggattccacccaagcatatgatttctcttgattcagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTCGAGATTCGAGCTTCACGCTTCCTTTCCTGTGTTGGCGAGAAGGGCCAGCAGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtgtgatgtaaactcccagctgtctgtccatagtgcattgctactatttt Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagtagtagtagtggattccacccaagcatatgatttctcttgattcagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTCGAGATTCGAGCTTCACGCTTCCTTTCCTGTGTTGGCGAGAAGGGCCAGCAGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtgtgatgtaaactcccagctgtctgtccatagtgcattgctactatttt Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagtagtagtagtggattccacccaagcatatgatttctcttgattcagGCACTGCAGGCTCAGGGGCAGAGAATTTGATCTGTCGAGATTCGAGCTTCACGCTTCCTTTCCTGTGTTGGCGAGAAGGGCCAGCAGCACCTGCAGATGTCCGGCACTCACTGCAGGTCCTCAACTCAACgtgtgatgtaaactcccagctgtctgtccatagtgcattgctactatttt #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACAC-GGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from CESAR CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACA-CGGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCcTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACG-GACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACAC-GGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Pairagon CCCTTCGGTTGCCG-CTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACAC-GGACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTC--ACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACG---GACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTC--ACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACG---GACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca Alignment from GeneWise CCCTTCGGTTGC-CGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG tagcactctcactgcattacctcaccagcttgcttttattctctttgcagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACG-GACGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaggtatggatgggggggtttccatgataccattactacaaagctatca #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTC-ACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagccCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCCATGGTGATGTCATGCACTGTGACTGTTACCTCAC-GGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTC-ACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagccCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCCATGGTGATGTCATGCACTGTGACTGTTACCTCAC-GGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTC------ACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTC-ACGGTGACGTCATGCACCGTGAC------CTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCCATGGTGATGTCATGCACTGTGACTGTTACCTCAC-GGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGT-CACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGG-------------------ATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCCATGGTGATGTCATGCACTGTGACT--------------GTTACCTCACGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTC------ACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTC------ACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTC------ACGGTGACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggcactccaccactctctaccaagacagacctgacgtctcatctaaacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCTTGCGACACTGCTGCAGGGAATGTCCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGAAGCATCAATACACCGGCGAGTATCAgtagaggggtaacatgagaggctatgcccaataatgatatcatgcccaat #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCGAAGCCCTTGAAGAACTCAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGA-TGCCAGGGTCACTggtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCGAAGCCCTTGAAGAACTCAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAG-TGATGCCAGGGTCACTggtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTG---AATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCGAAGCCCTTGAAGAACTCAAGcGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGATGCCAGGGTCACTGGTAAgtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCGAAGCCCTTGAAGAACTCAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTG-ATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGCT-AAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCGAAGCCCTTGAAGAACTCAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTG-ATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACA ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCGAAGCCCTTGAAGAACTCAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACA ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCGAAGCCCTTGAAGAACTCAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCGAAGCCCTTGAAGAACTCAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAG-AAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG gtgggtctggtttcaagtactcatctcttttctctttcgttctactgcagagGAAGAATTCCACACCATCGACCTGATTCCTCTCTTACAGCAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAGTCCA-AAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAGgtaggcgtaacttgaaattggaagagggtgcaaggcattatagagctgac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAG-AAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG gtgggtctggtttcaagtactcatctcttttctctttcgttctactgcagagGAAGAATTCCACACCATCGACCTGATTCCTCTCTTACAGCAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAGTCC-AAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAGgtaggcgtaacttgaaattggaagagggtgcaaggcattatagagctgac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG gtgggtctggtttcaagtactcatctcttttctctttcgttctactgcagAGGAAGAATTCCACACCATCGACCTGATTCCTCTCTTACAGCAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAGTCCAAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAGgtaggcgtaacttgaaattggaagagggtgcaaggcattatagagctgac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGA-AGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGT------GAAGAACCAG gtgggtctggtttcaagtactcatctcttttctctttcgttctactgcagAGGAAGAATTCCACACCATCGACCTGATTCCTCTCTTACAGCAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAGTCCA-AAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAGgtaggcgtaacttgaaattggaagagggtgcaaggcattatagagctgac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAG-AAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG gtgggtctggtttcaagtactcatctcttttctctttcgttctactgcagAGGAAGAATTCCACACCATCGACCTGATTCCTCTCTTACAGCAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAGTCCA-AAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAGgtaggcgtaacttgaaattggaagagggtgcaaggcattatagagctgac Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagtactcatctcttttctctttcgttctactgcagAGGAAGAATTCCACACCATCGACCTGATTCCTCTCTTACAGCAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAGTCCAAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaggtaggcgtaacttgaaattggaagagggtgcaaggcattatagagctgac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagtactcatctcttttctctttcgttctactgcagAGGAAGAATTCCACACCATCGACCTGATTCCTCTCTTACAGCAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAGTCCAAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaggtaggcgtaacttgaaattggaagagggtgcaaggcattatagagctgac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG gtgggtctggtttcaagtactcatctcttttctctttcgttctactgcagAGGAAGAATTCCACACCATCGACCTGATTCCTCTCTTACAGCAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAGTCCAAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAGgtaggcgtaacttgaaattggaagagggtgcaaggcattatagagctgac #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGC-TGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCCTGGGCCTTCTCTGTCACTGGCAATGGGGAGG-CCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGggtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from CESAR GGC---ATGTGTGGCTCCTGC-TGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCCTGGGCCTTCTCTGTCACTGGCAATGGGG-AGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGggtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Spaln_aa2Genome TGTGTGGC---TCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagggcagTATGTGCAGTTCCTGCCTGGGCCTTCTCTGTCACTGGCAATGG-GGAGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGC-TGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCCTGGGCCTTCTCTGTCACTGGCAATGGGGA-GGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Pairagon GGC---ATGTGTGGCTCCTG-CTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCCTGGGCCTTCTCTGTCACTGGCAATGGGGA-GGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Exonerate_protein2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGC---AGTATGTGCAGTTCCTGCCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Exonerate_coding2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGC---AGTATGTGCAGTTCCTGCCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from GeneWise AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGT---ATGTGCAGTTCCTGCCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTGGACAAG-GCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagacgaacccctccatagggtcccttaatatactttgttttctgtatagagCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTGCTTGGGTGGATTGCCCTCCAATGCCT-TGCAGCCATAAAGAATCTGggtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from CESAR agCTCTTGGATTGTGACAAGGTGGACAAG-GCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagacgaacccctccatagggtcccttaatatactttgttttctgtatagagCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTGCTTGGGTGGATTGCCCTCCAATGCC-TTGCAGCCATAAAGAATCTGggtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAGGTGGACAAG-GCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGcGCCTGCTTGGGTGGATTGCCCTCCAATGCCTT-GCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTGGACAAG-GCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTGCTTGGGTGGATTGCCCTCCAATGCCT-TGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTGGACAAG-GCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTGCTTGGGTGGATTGCCCTCCAATGCCT-TGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTGCTTGGGTGGATTGCCCTCCAATGCCTTGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTGCTTGGGTGGATTGCCCTCCAATGCCTTGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGCGCCTGCTTGGGTGGATTGCCCTCCAATGCCTTGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCC-GACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagAGAGGTTGCAACCATTTCCCTGGCCCATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTCGACAACATCCAGGCTCTGTGGTGCATAA-GCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCC-GACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagAGAGGTTGCAACCATTTCCCTGGCCCATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTCGACAACATCCAGGCTCTGTGGTGCA-TAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Spaln_aa2Genome -- -AAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG CAgtttgggcttatctaacccaaggacagtgctgtattctttgttcacagagaggttgcaaccatttccctggcccatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTCGACAACATCCAGGCTCTGTGGTGCATAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Spaln_nt2Genome GGAAGCTGCA A--ATGCTGCTGGGCCATGGCAGCTGC-CGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG agtttgggcttatctaacccaagGACAG-TGCTgtattctttgttcacagagaggttgcaaccatttccctggcccatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTCGACAACATCCAGGCTCTGTGGTGCAT-AAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGC-CGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagAGAGGTTGCAACCATTTCCCTGGCCCATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTCGACAACATCCAGGCTCTGTGGTGCAT-AAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagagaggttgcaaccatttccctggcccaTGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTCGACAACATCCAGGCTCTGTGGTGCATAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggcttatctaacccaaggacagtgctgtattctttgttcacagagaggttgcaaccatttccctggcccaTGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTCGACAACATCCAGGCTCTGTGGTGCATAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca Alignment from GeneWise TG CAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG CAgtttgggcttatctaacccaaggacagtgctgtattctttgttcacagagaggttgcaaccatttccctggcccatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTCGACAACATCCAGGCTCTGTGGTGCATAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtataaggggttaccatgtggcaagctgtgttctctgctcatatgtacca #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATG-ACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGCACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTC-AACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacatcacctg Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATG-ACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGCACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCT-CAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacagtgctgt Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATG-ACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGCTGC-------- accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGcACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCA-ACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGGTGAGTGCCCTAGCTCAgtttgggcttatctaacccaaggacatcacctg Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATG-ACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGCACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTC-AACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacatcacctg Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATG-ACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGCACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCA-ACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacatcacctg Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATG-ACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCC--CGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGCACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCA---ACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacatcacctg Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATG-ACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCC--CGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGCACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCA---ACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacatcacctg Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGC---------TG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGCACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGGTGAGTGCCCTAGCTCAgtttgggcttatctaacccaaggacatcacctg #### Cwf19l1_ID8941_3 --> 0 - 1 Original Alignment CTGCTGTTGTGT-GTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAg tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTCGTAGGAAACTTCTTTGGCTCTGCCCAGG-TGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAggtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from CESAR CTGCTGTTGTGT-GTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAg tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTCGTAGGAAACTTCTTTGGCTCTGCCCAG-GTGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAggtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Spaln_aa2Genome CTGCTGTTGTGT-GTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTcGTAGGAAACTTCTTTGGCTCTGCCCAGGT-GCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Spaln_nt2Genome CTGCTGTTGTGT-GTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTCGTAGGAAACTTCTTTGGCTCTGCCCAGG-TGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Pairagon CTGCTGTTGTGT-GTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTCGTAGGAAACTTCTTTGGCTCTGCCCAGG-TGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Exonerate_protein2genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTCGTAGGAAACTTCTTTGGCTCTGCCCAGGTGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Exonerate_coding2genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTCGTAGGAAACTTCTTTGGCTCTGCCCAGGTGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from GeneWise CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTCGTAGGAAACTTCTTTGGCTCTGCCCAGGTGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGG-AAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGCAAATATGGCTTCATCTACAAGACACATCTGT-TGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGG-AAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGCAAATATGGCTTCATCTACAAGACACATCTG-TTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGCAAATATGGCTTCATCTACAAGACACATCTGTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGG-AAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGCAAATATGGCTTCATCTACAAGACACATCTG-TTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGG-AAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGCAAATATGGCTTCATCTACAAGACACATCTG-TTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGCAAATATGGCTTCATCTACAAGACACATCTGTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGCAAATATGGCTTCATCTACAAGACACATCTGTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGCAAATATGGCTTCATCTACAAGACACATCTGTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTT-CAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtacagtgtgttcactctatgttggttgcagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAATATTCATGCAAATATCCGCCAGCTCCCAGGCCACAGAACCGGATGGGGGTTGCAAAG-TGCATTGCAGCTTCTGATCGAGCACTCGTGGGAA---GGTGAAGAATTGGACATACAGgtgagcaacaatctcaaaaggtaccaaagggcagctgagtgtattccaga Alignment from CESAR CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTT-CAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtactttgtgttcactctatgttggttgcagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAATATTCATGCAAATATCCGCCAGCTCCCAGGCCACAGAACCGGATGGGGGTTGCAAA-GTGCATTGCAGCTTCTGATCGAGCACTCGTGGGAA---GGTGAAGAATTGGACATACAGgtgagcaacaatctcaaaaggtaccaaagggcagctgagtgtattccaga Alignment from Spaln_aa2Genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtacagtgtgttcactctatgttggttgcagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAATATTCATGCAAATATCCGCCAGCTCCCAGGCCACAGAACCGGATGGGGGTTGCAAAGTGCATTGCAGCTTCTGATCGAGCACTCGTGGGAA---GGTGAAGAATTGGACATACAGgtgagcaacaatctcaaaaggtaccaaagggcagctgagtgtattccaga Alignment from Spaln_nt2Genome CTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTC-AGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTGTACAGTGTGTTCACTCTATGTTGGTTGCAGGGTGTTA---CACGCAACATAATACAGGCATGCATTGAGGAGAATATTCATGCAAATATCCGCCAGCTCCCAGGCCACAGAACCGGATGGGGGTTGCAAAG-TGCATTGCAGCTTCTGATCGAGCACTCGTGGGA-AGGTGA-AGA-ATTGGACATACAGgtgagcaacaatctcaaaaggtaccaaagggcagctgagtgtattccaga Alignment from Pairagon CTTTAGCGGCCTGTACCG-------------------------------GGGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCT-TCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTGTACAGTGTGTTCACTCTATGTTGGTTGCAGGGTGTTA---CACGCAACATAATACAGGCATGCATTGAGGAGAATATTCATGCAAATATCCGCCAGCTCCCAGGCCACAGAACCGGATGGGGGTTGCAAAG-TGCATTGCAGCTTCTGATCGAGCACTCGTGGGA-----------------------AGgtgaagaattggacatacaggtgagcaacaatctcaaaaggtaccaaagggcagctgagtgtattccaga Alignment from Exonerate_protein2genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtacagtgtgttcactctatgttggttgcagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAATATTCATGCAAATATCCGCCAGCTCCCAGGCCACAGAACCGGATGGGGGTTGCAAAGTGCATTGCAGCTTCTGATCGAGCACTCGTGGGAA---GGTGAAGAATTGGACATACAGgtgagcaacaatctcaaaaggtaccaaagggcagctgagtgtattccaga Alignment from Exonerate_coding2genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtacagtgtgttcactctatgttggttgcagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAATATTCATGCAAATATCCGCCAGCTCCCAGGCCACAGAACCGGATGGGGGTTGCAAAGTGCATTGCAGCTTCTGATCGAGCACTCGTGGGAA---GGTGAAGAATTGGACATACAGgtgagcaacaatctcaaaaggtaccaaagggcagctgagtgtattccaga Alignment from GeneWise CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtacagtgtgttcactctatgttggttgcagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAATATTCATGCAAATATCCGCCAGCTCCCAGGCCACAGAACCGGATGGGGGTTGCAAAGTGCATTGCAGCTTCTGATCGAGCACTCGTGGGAA---GGTGAAGAATTGGACATACAGgtgagcaacaatctcaaaaggtaccaaagggcagctgagtgtattccaga #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGCAAGAGC-AATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAAC-GCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from CESAR GGCTTACTTTGCAAGAGC-AATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAA-CGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Spaln_aa2Genome GGCTTACTTTGCAAGAGC-AATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCcAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACG-CTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Spaln_nt2Genome GGCTTACTTTGCAAGAG-CAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAAC-GCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Pairagon GGCTTACTTTGCAAGAG-CAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAAC-GCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGC-TTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagagaatgtgtgagcccattccagctaaatcttctgctatgttttataggaATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACCTTCTCACTTACAACTCTGCGAAATTTAGGCA-GGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATggtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGC-TTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagagaatgtgtgagcccattccagctaaatcttctgctatgttttataggaATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACCTTCTCACTTACAACTCTGCGAAATTTAGGC-AGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATggtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACCTTCTCACTTACAACTCTGCGAAATTTAGGCAGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCT-TCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACCTTCTCACTTACAACTCTGCGAAATTTAGGCA-GGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCG-CTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACCTTCTCACTTACAACTCTGCGAAATTTAGGCA-GGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACCTTCTCACTTACAACTCTGCGAAATTTAGGCAGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACCTTCTCACTTACAACTCTGCGAAATTTAGGCAGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from GeneWise -------------------------------------------------GGCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG GAGAGAATGTGTGAGCCCATTCCAGCTAAATCTTCTGCTATGTTTTATAGGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACCTTCTCACTTACAACTCTGCGAAATTTAGGCAGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGC-AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGCAGGAAGCCAACTGTTGTATTACATGGAT-TGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTG-GGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGCAGGAAGCCAACTGTTGTATTACATGGA-TTGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGC-AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGcAGGAAGCCAACTGTTGTATTACATGGATT-GAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGG-CAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGA---AGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGCAGGAAGCCAACTGTTGTATTACATGGAT-TGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTT-GGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGCAGGAAGCCAACTGTTGTATTACATGGAT-TGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGCAGGAAGCCAACTGTTGTATTACATGGATTGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGCAGGAAGCCAACTGTTGTATTACATGGATTGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGCAGGAAGCCAACTGTTGTATTACATGGATTGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCAT-AAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATCAAAAAAAATTCCGAACAGAAGAATTTAACACTAAGAT-CAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGggtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from CESAR AAATTTCAAGAATTGCAT-AAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATCAAAAAAAATTCCGAACAGAAGAATTTAACACTAAGA-TCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGggtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATCAAAAAAAATTCCGAACAGAAGAATTTAACACTAAGATCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATCAAAAAAAATTCCGAACAGAAGAATTTAACACTAAGA-TCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Pairagon AAATTTCAAGAATTGCAT-AAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATCAAAAAAAATTCCGAACAGAAGAATTTAACACTAAGA-TCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATCAAAAAAAATTCCGAACAGAAGAATTTAACACTAAGATCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATCAAAAAAAATTCCGAACAGAAGAATTTAACACTAAGATCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from GeneWise AATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagaaatttcaagAATTACATCAAAAAAAATTCCGAACAGAAGAATTTAACACTAAGATCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATCAAG-AAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGCAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGG-TTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATCAAG-AAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGCAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAG-GTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTACATCAAG-AAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGcAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGT-TTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACATCAAG-AAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGCAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGG-TTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACATCAAG-AAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGCAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGG-TTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGCAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Exonerate_coding2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGCAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGCAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTA-AAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagccATCCAGGGGTGGTTGCAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCA-ATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from CESAR ccATTCAGGGCTGGCTA-AAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagccATCCAGGGGTGGTTGCAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCC-AATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGCAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTA-AAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGCAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCA-ATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Pairagon CCATTCAGGGCTGGCTA-AAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGCAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCA-ATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGCAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGCAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagctcagatcccatcctgtcacccccctcccccagCCATCCAGGGGTGGTTGCAAGGAGGGCCCATCTCTGACCAGCCCCACCCAGCTACTCTCCAATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacataagaacagttcttaggactacggttgaaagccttatcaggtggc #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTG-ACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagatGCTGAAACTACTGCAAAACCTTGGCAT---ATGGCCAAAGTCTCTGTGCACTGGGAGGAAACAGATCAGGGCAGCTCCCA-AGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAggtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from CESAR atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTG-ACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagatGCTGAAACTACTGCAAAACCTTGG---CATATGGCCAAAGTCTCTGTGCACTGGGAGGAAACAGATCAGGGCAGCTCCC-AAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAggtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCTTGG---CATATGGCCAAAGTCTCTGTGCACTGGGAGGAAACAGATCAGGGCAGCTCCCAAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTG-ACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCTTGG---CATATGGCCAAAGTCTCTGTGCACTGGGAGGAAACAGATCAGGGCAGCTCCCA-AGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Pairagon ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTG-ACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCTTGG---CATATGGCCAAAGTCTCTGTGCACTGGGAGGAAACAGATCAGGGCAGCTCCCA-AGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCTTGG---CATATGGCCAAAGTCTCTGTGCACTGGGAGGAAACAGATCAGGGCAGCTCCCAAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Exonerate_coding2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCTTGG---CATATGGCCAAAGTCTCTGTGCACTGGGAGGAAACAGATCAGGGCAGCTCCCAAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from GeneWise ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCTTGG---CATATGGCCAAAGTCTCTGTGCACTGGGAGGAAACAGATCAGGGCAGCTCCCAAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGC-AGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg accatccctttaaattaccaaccatcccgaggtttgtttgttttccataggtACCCTAGGTGTGACCTTGTCATCCTGCCAGTGTGCCTGGCACCACACACACTTTCGAGC-TGCAGCTGATGAAATAGAGTTGGGCTTGggtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGC-AGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg accatccctttaaattaccaaccatcccgaggtttgtttgttttccataggtACCCTAGGTGTGACCTTGTCATCCTGCCAGTGTGCCTGGCACCACACACACTTTCGAGC-TGCAGCTGATGAAATAGAGTTGGGCTTGggtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCCAGTGTGCCTGGCACCACACACACTTTCGAGCTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTG-CAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCCAGTGTGCCTGGCACCACACACACTTTCGAGC-TGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTG-CAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCCAGTGTGCCTGGCACCACACACACTTTCGAGC-TGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCCAGTGTGCCTGGCACCACACACACTTTCGAGCTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCCAGTGTGCCTGGCACCACACACACTTTCGAGCTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCCAGTGTGCCTGGCACCACACACACTTTCGAGCTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACC-TTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttaagtctattctggcctctatgtctacagCTCAATGTCGATAGCAATGAACAGGGGTCCTATGTAGTGGCAATGGAAACACTTTACCAATTTAGGACCCATTGTGGATATGTTTGTGG-GGACCTGGAGAGGCAGGGACAGGGGCAGgtgcgtaggatcccctatggctcatcccctatggctctgtgtttccgttc Alignment from CESAR CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACC-TTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttaagtctattctggcctctatgtctacagCTCAATGTCGATAGCAATGAACAGGGGTCCTATGTAGTGGCAATGGAAACACTTTACCAATTTAGGACCCATTGTGGATATGTTTGTG-GGGACCTGGAGAGGCAGGGACAGGGGCAGgtgcgtaggatcccctatggctcatcccctatggctctgtgtttccgttc Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttaagtctattctggcctctatgtctacagCTCAATGTCGATAGCAATGAACAGGGGTCCTATGTAGTGGCAATGGAAACACTTTACCAATTTAGGACCCATTGTGGATATGTTTGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgcgtaggatcccctatggctcatcccctatggctctgtgtttccgttc Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAAC-CTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttaagtctattctggcctctatgtctacagCTCAATGTCGATAGCAATGAACAGGGGTCCTATGTAGTGGCAATGGAAACACTTTACCAATTTAGGACCCATTGTGGATATGTTTGTGG-GGACCTGGAGAGGCAGGGACAGGGGCAGgtgcgtaggatcccctatggctcatcccctatggctctgtgtttccgttc Alignment from Pairagon CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAAC-CTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttaagtctattctggcctctatgtctacagCTCAATGTCGATAGCAATGAACAGGGGTCCTATGTAGTGGCAATGGAAACACTTTACCAATTTAGGACCCATTGTGGATATGTTTGTGG-GGACCTGGAGAGGCAGGGACAGGGGCAGgtgcgtaggatcccctatggctcatcccctatggctctgtgtttccgttc Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACC-TTTACCAATTTAGGACCCATTGTGGATATG--TGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttaagtctattctggcctctatgtctacagCTCAATGTCGATAGCAATGAACAGGGGTCCTATGTAGTGGCAATGGAAACACTTTACCAATTTAGGACCCATTGTGGATATGTTTGT---GGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgcgtaggatcccctatggctcatcccctatggctctgtgtttccgttc Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTT---TACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttaagtctattctggcctctatgtctacagCTCAATGTCGATAGCAATGAACAGGGGTCCTATGTAGTGGCAATGGAAACA--CTTTACCAATTTAGGACCCATTGTGGATATGTTTGTGGG-GACCTGGAGAGGCAGGGACAGGGGCAGgtgcgtaggatcccctatggctcatcccctatggctctgtgtttccgttc Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttaagtctattctggcctctatgtctacagCTCAATGTCGATAGCAATGAACAGGGGTCCTATGTAGTGGCAATGGAAACACTTTACCAATTTAGGACCCATTGTGGATATGTTTGTGGGGACCTGGAGAGGCAGGGACAGGGGCAGgtgcgtaggatcccctatggctcatcccctatggctctgtgtttccgttc #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTG-ACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag atagtagctttgccctgttttgcttcctctgttggtatgttgtctttcaggtTTATTGAGTGACCGTAAAAAGGTACACTTTGGGCACCCAGCCCACCGTGCTGAGGACAT-CCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaagtttcctatctgtgtctcaaggaggaggcacacatctccttcatga Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTG-ACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag atagtagctttgccctgttttgcttcctctgttggtatgttgtctttcaggtTTATTGAGTGACCGTAAAAAGGTACACTTTGGGCACCCAGCCCACCGTGCTGAGGACA-TCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaagtttcctatctgtgtctcaaggaggaggcacacatctccttcatga Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagtagctttgccctgttttgcttcctctgttggtatgttgtctttcagGTTTATTGAGTGACCGTAAAAAGGTACACTTTGGGCACCCAGCCCACCGTGCTGAGGACATCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctatctgtgtctcaaggaggaggcacacatctccttcatga Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTG-ACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagtagctttgccctgttttgcttcctctgttggtatgttgtctttcagGTTTATTGAGTGACCGTAAAAAGGTACACTTTGGGCACCCAGCCCACCGTGCTGAGGACA-TCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctatctgtgtctcaaggaggaggcacacatctccttcatga Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTG-ACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagtagctttgccctgttttgcttcctctgttggtatgttgtctttcagGTTTATTGAGTGACCGTAAAAAGGTACACTTTGGGCACCCAGCCCACCGTGCTGAGGACA-TCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctatctgtgtctcaaggaggaggcacacatctccttcatga Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagtagctttgccctgttttgcttcctctgttggtatgttgtctttcagGTTTATTGAGTGACCGTAAAAAGGTACACTTTGGGCACCCAGCCCACCGTGCTGAGGACATCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctatctgtgtctcaaggaggaggcacacatctccttcatga Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagtagctttgccctgttttgcttcctctgttggtatgttgtctttcagGTTTATTGAGTGACCGTAAAAAGGTACACTTTGGGCACCCAGCCCACCGTGCTGAGGACATCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctatctgtgtctcaaggaggaggcacacatctccttcatga Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagtagctttgccctgttttgcttcctctgttggtatgttgtctttcagGTTTATTGAGTGACCGTAAAAAGGTACACTTTGGGCACCCAGCCCACCGTGCTGAGGACATCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaagtttcctatctgtgtctcaaggaggaggcacacatctccttcatga #### Dkk1_ID6483_2 --> 0 - 1 Original Alignment CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTC-GGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTCGAAGGTGTTCAGATCTGCTTGGCTTGCCGAA-GCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACcgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from CESAR CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT--GTTCGAAGGTGTTCAGATCTGCTTGGCTTGCC-GAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACcgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Spaln_aa2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTCGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Spaln_nt2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCTG--TTCGAAGGTGTTCAGATCTGCTTGGCTTGCCG-AAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Pairagon CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCTG--TTCGAAGGTGTTCAGATCTGCTTGGCTTGCCG-AAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Exonerate_protein2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTCGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Exonerate_coding2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT--GTTCGAAGGTGTTCAGATCTGCTTGGCTTGCCG-AAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from GeneWise CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTCGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa #### Dock8_ID5395_16 --> 0 - 2 Original Alignment GTCATCTTTGGC-AAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGACAAGTCAAGG---CCCGAATTCCTGCAGGAAG-ATATACAGCTATTACGTACCATAACaagtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from CESAR GTCATCTTTGGC-AAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGACAAGTCA---AGGCCCGAATTCCTGCAGGAA-GATATACAGCTATTACGTACCATAACaagtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Spaln_aa2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGACAAGTCAAG---GCCCGAATTCCTGCAGGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Spaln_nt2Genome GTCATCTTTGG-CAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGACAAGTCAA---GGCCCGAATTCCTGCAGGAAG-ATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Pairagon GTCATCTTTGG-CAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGACAAGTCAA---GGCCCGAATTCCTGCAGGAAG-ATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Exonerate_protein2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGACAAGTCAAGGCC---CGAATTCCTGCAGGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Exonerate_coding2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGACAAGTCAAGGCC---CGAATTCCTGCAGGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from GeneWise GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGACAAGTCAAGGCC---CGAATTCCTGCAGGAAGATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc #### Dock8_ID5396_17 --> 1 - 0 Original Alignment gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCC-AAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgagtctcacatcacagttgattccggtccttatgcactctctgcaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCCAAGCTGACAGTGAATCATCATCTCCTCTTCA-CTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaagtacttaaccagaactggtggtttgctaccttccagtctggtttcc Alignment from CESAR gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCC-AAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgagtctcacatcacagttgattccggtccttatgcactctctgcaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCCAAGCTGACAGTGAATCATCATCTCCTCTTCA-CTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaagtacttaaccagaactggtggtttgctaccttccagtctggtttcc Alignment from Spaln_aa2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgagtctcacatcacagttgattccggtccttatgcactctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCCAAGCTGACAGTGAATCATCATCTCCTCTTCACTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaagtacttaaccagaactggtggtttgctaccttccagtctggtttcc Alignment from Spaln_nt2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGC-CAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgagtctcacatcacagttgattccggtccttatgcactctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCCAAGCTGACAGTGAATCATCATCTCCTCTTCA-CTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaagtacttaaccagaactggtggtttgctaccttccagtctggtttcc Alignment from Pairagon GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTG-CCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgagtctcacatcacagttgattccggtccttatgcactctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCCAAGCTGACAGTGAATCATCATCTCCTCTTCA-CTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaagtacttaaccagaactggtggtttgctaccttccagtctggtttcc Alignment from Exonerate_protein2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgagtctcacatcacagttgattccggtccttatgcactctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCCAAGCTGACAGTGAATCATCATCTCCTCTTCACTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaagtacttaaccagaactggtggtttgctaccttccagtctggtttcc Alignment from Exonerate_coding2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgagtctcacatcacagttgattccggtccttatgcactctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCCAAGCTGACAGTGAATCATCATCTCCTCTTCACTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaagtacttaaccagaactggtggtttgctaccttccagtctggtttcc Alignment from GeneWise GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgagtctcacatcacagttgattccggtccttatgcactctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCCAAGCTGACAGTGAATCATCATCTCCTCTTCACTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaagtacttaaccagaactggtggtttgctaccttccagtctggtttcc #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCG-CTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagacGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGA-GCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCG-CTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagacGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAG-AGAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCG-CTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGcCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAG-CTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGC-TGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGA-GCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCG-CTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAG-AGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGAT-GGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATCGGAGAAGAGGAGACACCCCAGCTTCCACCTCAGG-CAGTCACCCTCCTGCCCATTATCAGaggtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from CESAR GATGAGTCTGAGGATACAGATACTGAT-GGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATCGGAGAAGAGGAGACACCCCAGCTTCCACCTCAGG-CAGTCACCCTCCTGCCCATTATCAGaggtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGAT-GGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATcGGAGAAGAGGAGACACCCCAGCTTCCACCTCAGGC-AGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATG-GGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATCGGAGAAGAGGAGACACCCCAGCTTCCACCTC-AGGCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGAT-GGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATCGGAGAAGAGGAGACACCCCAGCTTCCACCTC-AGGCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATCGGAGAAGAGGAGACACCCCAGCTTCCACCTCAGGCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Exonerate_coding2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATCGGAGAAGAGGAGACACCCCAGCTTCCACCTCAGGCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATCGGAGAAGAGGAGACACCCCAGCTTCCACCTCAGGCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTC-CTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagccCGGGCCCTTGAGCTCTTCCTTGGAGTCCCTGCTGAAGAAGGCTTGCC-GGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACctgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from CESAR ccCGGGCCCTTGAGCTCTTC-CTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagccCGGGCCCTTGAGCTCTTCCTTGGAGTCCCTGCTGAAGAAGGCTTGC-CGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACctgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCTTCCTTGGAGTCCCTGCTGAAGAAGGCTTGCCGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTG-GAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCTTCCTTGGAGTCCCTGCTGAAGAAGGCTTGCC-GGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCC-TGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCTTCCTTGGAGTCCCTGCTGAAGAAGGCTTGCC-GGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCTTCCTTGGAGTCCCTGCTGAAGAAGGCTTGCCGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCT-GGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCTTCCTTGGAGTCCCTGCTGAAGAAGGCTTGCCG-GTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccaccagcgtgacaactcttttgtagCCCGGGCCCTTGAGCTCTTCCTTGGAGTCCCTGCTGAAGAAGGCTTGCCGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACATCTCACCTgtgagtggctgttgccaagctggcaggggctttcaaagctatggggttag #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGT-ACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagtgAGCAATGAGGAACTGCGAGGAAGTCGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGG-TAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGT-ACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagtgAGCAATGAGGAACTGCGAGGAAGTCGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGG-TAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTCGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTA-CGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTCGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGT-AGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGT-ACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTCGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGT-AGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTCGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTCGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAGGAAGTCGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAAC-AACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcaggtATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATCAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTC-AGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAAC-AACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcaggtATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATCAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTC-AGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATCAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAA-CAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATCAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTC-AGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAA-CAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATCAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTC-AGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAAC-AACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATCAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCAGGCCAGGAGCTTGCCTATCCAGtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAAC-AACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATCAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCAGGCCAGGAGCTTGCCTATCCAGtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATCAACAGCAGCTCGATTTCTGGTGTTTGGGTCTTTCAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGACACA-AGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctggggtggggtcacttgtcctctacctctgcttgttattacacagCATCGGTTGCAGGACACACAGTCAGTATGTGTGTGCAGAGCAGCAAGCCCTAGAGC-AGAACAGGGACAGGTCGATGGCAGGGCTGCTGAAGTGCAGAAGCAGCTTAGGAGCCTGATGGAATCAggtaaaaccccgcacttttgactttgctcctctagaattcaccaccttgtg Alignment from CESAR CAACGGTTCCAGGACACA-AGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctggggtggggtcacttgtcctctacctctgcttgttattacacagCATCGGTTGCAGGACACACAGTCAGTATGTGTGTGCAGAGCAGCAAGCCCTAGAGC-AGAACAGGGACAGGTCGATGGCAGGGCTGCTGAAGTGCAGAAGCAGCTTAGGAGCCTGATGGAATCAggtaaaaccccgcacttttgactttgctcctctagaattcaccaccttgtg Alignment from Spaln_aa2Genome CAACGGTTCCAGGACACA-AGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctacctctgcttgttattacacagCATCGGTTGCAGGACACAcAGTCAGTATGTGTGTGCAGAGCAGCAAGCCCTAGAGCA-GAACAGGGACAGGTCGATGGCAGGGCTGCTGAAGTGCAGAAGCAGCTTAGGAGCCTGATGGAATCAGgtaaaaccccgcacttttgactttgctcctctagaattcaccaccttgtg Alignment from Spaln_nt2Genome CAACGGTTCCAGGACACA-AGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctacctctgcttgttattacacagCATCGGTTGCAGGACACACAGTCAGTATGTGTGTGCAGAGCAGCAAGCCCTAGAGCA-GAACAGGGACAGGTCGATGGCAGGGCTGCTGAAGTGCAGAAGCAGCTTAGGAGCCTGATGGAATCAGgtaaaaccccgcacttttgactttgctcctctagaattcaccaccttgtg Alignment from Pairagon CAACGGTTCCAGGACACA-AGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctacctctgcttgttattacacagCATCGGTTGCAGGACACACAGTCAGTATGTGTGTGCAGAGCAGCAAGCCCTAGAGCA-GAACAGGGACAGGTCGATGGCAGGGCTGCTGAAGTGCAGAAGCAGCTTAGGAGCCTGATGGAATCAGgtaaaaccccgcacttttgactttgctcctctagaattcaccaccttgtg Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctacctctgcttgttattacacagCATCGGTTGCAGGACACACAGTCAGTATGTGTGTGCAGAGCAGCAAGCCCTAGAGCAGAACAGGGACAGGTCGATGGCAGGGCTGCTGAAGTGCAGAAGCAGCTTAGGAGCCTGATGGAATCAGgtaaaaccccgcacttttgactttgctcctctagaattcaccaccttgtg Alignment from Exonerate_coding2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctacctctgcttgttattacacagCATCGGTTGCAGGACACACAGTCAGTATGTGTGTGCAGAGCAGCAAGCCCTAGAGCAGAACAGGGACAGGTCGATGGCAGGGCTGCTGAAGTGCAGAAGCAGCTTAGGAGCCTGATGGAATCAGgtaaaaccccgcacttttgactttgctcctctagaattcaccaccttgtg Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctacctctgcttgttattacacagCATCGGTTGCAGGACACACAGTCAGTATGTGTGTGCAGAGCAGCAAGCCCTAGAGCAGAACAGGGACAGGTCGATGGCAGGGCTGCTGAAGTGCAGAAGCAGCTTAGGAGCCTGATGGAATCAGgtaaaaccccgcacttttgactttgctcctctagaattcaccaccttgtg #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGC-TCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGA-CAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGatgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from CESAR GCACCACCTACCCTGGTCAGC-TCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGA-CAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGatgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGC-TCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCcTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGAC-AATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGC-TCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGA-CAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Pairagon GCACCACCTACCCTGGTCAG-CTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGA-CAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGC-TCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTC--ACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGAC---AATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGC-TCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTC--ACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGAC---AATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGA-CTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACCTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTG-GCTTAGCCTCACCCTTGCAGTC---CTCCTACAAGAAGGCCGTGCCacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGA-CTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACCTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCT-GGCTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGA-CTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAAcCTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGG-CTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGAC-TGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACCTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTG-GCTTAGCCTCACCCT---TGCAGTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGA-CTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACCTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTG-GCTTAGCCTCACCCT---TGCAGTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Exonerate_protein2genome attgcaactatccatcttcacacttctctattgtttccttatcttcacaggagtcaaagggacagcggaaagtactggcaacagttggtgtcaacttagaccatcacgcagggcccatacctgcccagatctcacttcaacctgcggcagaagcccaagtctgtgaaagttgtgcatgctggcttagcctcacccttgcagtcctcctacaagaaggccgtgccacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Exonerate_coding2genome attgcaactatccatcttcacacttctctattgtttccttatcttcacaggagtcaaagggacagcggaaagtactggcaacagttggtgtcaacttagaccatcacgcagggcccatacctgcccagatctcacttcaacctgcggcagaagcccaagtctgtgaaagttgtgcatgctggcttagcctcacccttgcagtcctcctacaagaaggccgtgccacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACCTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGGCTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTG-AAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatatcgactcatgttcctcatcacaacttctccccccttctccacaaagggGACTTCCTCATCGTTGACCCTTTTGAAGGAGGCGAAAAAGTTCAAGGCAGAGATCTCATTTGTACTCTGCAAGAACC-TGTCCACACCCTACAGAAGGAAGGCCAAtggtgagttagtctccctgtgccactgtccagcaataagagactgttagcgg Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTG-AAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatatcgactcatgttcctcatcacaacttctccccccttctccacaaagggGACTTCCTCATCGTTGACCCTTTTGAAGGAGGCGAAAAAGTTCAAGGCAGAGATCTCATTTGTACTCTGCAAGAAC-CTGTCCACACCCTACAGAAGGAAGGCCAAtggtgagttagtctccctgtgccactgtccagcaataagagactgttagcgg Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatatcgactcatgttcctcatcacaacttctccccccttctccacaaagGGGACTTCCTCATCGTTGACCCTTTTGAAGGAGGCGAAAAAGTTCAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCTGTCCACACCCTACAGAAGGAAGGCCAATGgtgagttagtctccctgtgccactgtccagcaataagagactgttagcgg Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTG-AAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatatcgactcatgttcctcatcacaacttctccccccttctccacaaagGGGACTTCCTCATCGTTGACCCTTTTGAAGGAGGCGAAAAAGTTCAAGGCAGAGATCTCATTTGTACTCTGCAAGAACC-TGTCCACACCCTACAGAAGGAAGGCCAATGgtgagttagtctccctgtgccactgtccagcaataagagactgttagcgg Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAG-TGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatatcgactcatgttcctcatcacaacttctccccccttctccacaaagGGGACTTCCTCATCGTTGACCCTTTTGAAGGAGGCGAAAAAGTTCAAGGCAGAGATCTCATTTGTACTCTGCAAGAACC-TGTCCACACCCTACAGAAGGAAGGCCAATGgtgagttagtctccctgtgccactgtccagcaataagagactgttagcgg Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatatcgactcatgttcctcatcacaacttctccccccttctccacaaagGGGACTTCCTCATCGTTGACCCTTTTGAAGGAGGCGAAAAAGTTCAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCTGTCCACACCCTACAGAAGGAAGGCCAATGgtgagttagtctccctgtgccactgtccagcaataagagactgttagcgg Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatatcgactcatgttcctcatcacaacttctccccccttctccacaaagGGGACTTCCTCATCGTTGACCCTTTTGAAGGAGGCGAAAAAGTTCAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCTGTCCACACCCTACAGAAGGAAGGCCAATGgtgagttagtctccctgtgccactgtccagcaataagagactgttagcgg Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatatcgactcatgttcctcatcacaacttctccccccttctccacaaagGGGACTTCCTCATCGTTGACCCTTTTGAAGGAGGCGAAAAAGTTCAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCTGTCCACACCCTACAGAAGGAAGGCCAATGgtgagttagtctccctgtgccactgtccagcaataagagactgttagcgg #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCA-GATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCACGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCG-CCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCA-GATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCACGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCG-CCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCACGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCA-GATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCACGATTTGAATTATGCAACTCGAGAAGATGCCCCAG-TCGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCA-GATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCACGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTC-GCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCACGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCACGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacaatttcaacatacagtgaaattttgtgtaattatttagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCACGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTCGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATCATCAGACCTGCACACATTTTGgtgagagtctagaggagggatgatttgcacaagcattaatatggtggggg #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTCAGAGAAGAATCCCAACAAATGGTGTTGGATATAGAAGATCTGG-TAATATCCAGACTCCTGAGaggtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTCAGAGAAGAATCCCAACAAATGGTGTTGGATATAGAAGATCTG-GTAATATCCAGACTCCTGAGaggtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTcAGAGAAGAATCCCAACAAATGGTGTTGGATATAGAAGATCTGGT-AATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAA-AGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTCAGAGAAGAATCCCAACAAATGGTGTTGGATATAGAAGATCTGG-TAATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTCAGAGAAGAATCCCAACAAATGGTGTTGGATATAGAAGATCTGG-TAATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTG--GATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTCAGAGAAGAATCCCAACAAATGGTGTTGGATATAGAAGATCTGGT---AATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAA---AGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCT--CAGAGAAGAATCCCAACAAATGGTGTTGGATATAGAAGATCTGGT-AATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCT-AAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTCAGAGAAGAATCCCAACAAATGGTGTTGGATATAGAAGATCTGgtaatatccagactcctgagaggtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGT-CCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagtAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCCACCAGCTCTTCAAGGGGGCAGCGAAGAAC-TAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtggacaccctaccctgttcctcaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGT-CCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagtAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCCACCAGCTCTTCAAGGGGGCAGCGAAGAA-CTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtatttagtgcctctcctctcccaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCA GCGTTCTGACACGCCCCGAAGAAAT tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAgtgttcagacacgtggacaccctaccctgttcctcagG------------CCGCGAAGAAAT Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCT-CCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGC GTTCTGACACGCCCCGAAGAAATTC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCCACCAGCTCTTCAAGGGGGCAGCGAAGAA-CTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTgttcagacacgtggacaccctaccctgttcctcag----------GCCGCGAAGAAATTC Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCT-CCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC-------------------------GCCCCGAAGAAATTCTTCCTCCTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCCACCAGCTCTTCAAGGGGGCAGCGAAGAA-CTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTGGACACCCTACCCTGTTCCTCAGGCCGCGAAGAAATTCTTCCTCCTCA Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtggacaccctaccctgttcctcaggccgcgAAGAAATTCTTCCTCCTCA Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCC tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtggacaccctaccctgttcctcaggccgcgAAGAAATTCTTCCTCCTCA Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG---------------------------CCCCGAAGAAATTCTTCCTCCT tacaattattccgatgtgctgggtattggatcttacaatttctaaaacagTAGCATTACAGTCCCTCCAGGGCTGCCACCAACCTGTAGTCCTTCCTTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCCCCTGGACTAAGCAATGGCCCCACCAGCTCTTCAAGGGGGCAGCGAAGAACTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGATCACCTGGGCCTCCAGGGATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTGGACACCCTACCCTGTTCCTCAGG--CCGCGAAGAAATTCTTCCTCCT #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagaaGGGATTTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATCACAATGT-CATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGgtgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from CESAR aaGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagaaGGGATTTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATCACAATG-TCATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGgtgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATCACAATGTCATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATCACAATGT-CATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Pairagon AAGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATCACAATGT-CATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATCACAATGTCATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATCACAATGTCATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATCACAATGTCATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGAT-TCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctctaattcctttccctgaccttcttttacccttctctttcagtTATGGTTATAGAGGTCAGGATCTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGG-CGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGAtggtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from CESAR tTATGGGTACAGGGGTCGTGAT-TCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctctaattcctttccctgaccttcttttacccttctctttcagtTATGGTTATAGAGGTCAGGATCTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAG-GCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGAtggtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATCTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGAT-TCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATCTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGG-CGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Pairagon TTATGGGTACAGGGGTCGTGAT-TCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATCTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGC-GTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGAT-TCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAG--GTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATCTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGC---GTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGAT-TCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAG--GTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATCTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGC---GTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATCTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTG-GTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGCGTTCATACCTGGGACTCAGAAACACTCC-GAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from CESAR CCCCTGCAGCCCGTG-GTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGCGTTCATACCTGGGACTCAGAAACACTC-CGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGCGTTCATACCTGGGACTCAGAAACACTCCGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTG-GTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGCGTTCATACCTGGGACTCAGAAACACTCC-GAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Pairagon CCCCTGCAGCCCGTG-GTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGCGTTCATACCTGGGACTCAGAAACACTCC-GAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGCGTTCATACCTGGGACTCAGAAACACTCCGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGCGTTCATACCTGGGACTCAGAAACACTCCGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGCGTTCATACCTGGGACTCAGAAACACTCCGAAACTACAGGAAATTGGTCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCAC-GAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagagACCTACACAATTGTGGCTCAGTCCCATGCTCATCGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAA-AGTACTGACTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCAC-GAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagagACCTACACAATTGTGGCTCAGTCCCATGCTCATCGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGA-AAGTACTGACTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATCGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAAAGTACTGACTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCA-CGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATCGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGAT-GGAAAGTACTGACTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCA-CGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATCGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAA-AGTACTGACTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATCGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAAAGTACTGACTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATCGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAAAGTACTGACTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATCGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAAAGTACTGACTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTG-CTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACCTGGTGGGAACCACGAAGAATGCATTAC-GAGAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtaccgcttctatttctaattccagGGACATACTGATGAGC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTG-CTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACCTGGTGGGAACCACGAAGAATGCATTA-CGAGAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtattgtttcttcccactcacacagGGACATACTGATGAGC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACCTGGTGGGAACCACGAAGAATGCATTACGAGAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtaccgcttctatttctaattccagGGACATACTGATGAGC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGC-TGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTA----------------------------------TCCAGGGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACCTGGTGGGAACCACGAAGAATGCATTAC-GAGAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGGTAAGTATTGTACCGCTTCTATTTCTAATTCCAGGGACATACTGATGAGC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTG-CTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACCTGGTGGGAACCACGAAGAATGCATTAC-GAGAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtaccgcttctatttctaattccagGGACATACTGATGAGC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACCTGGTGGGAACCACGAAGAATGCATTACGAGAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtaccgcttctatttctaattccagGGACATACTGATGAGC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACCTGGTGGGAACCACGAAGAATGCATTACGAGAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtaccgcttctatttctaattccagGGACATACTGATGAGC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggatagtataaattccctgtttttcatttttagATTCCAGAACACTTTGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACCTGGTGGGAACCACGAAGAATGCATTACGAGAGGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaagtattgtaccgcttctatttctaattccagGGACATACTGATGAGC #### Eml3_ID2516_15 --> 0 - 0 Original Alignment CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGG-CAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgggaattgtattgtttcttcccactcacacagGGACATACTGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGAGAAGGTC-TGCATTGGCCTGGAGCATGGATCTAAAAgtacaaagctgtcctttagcatcctcaccaaacatgttcagatagcaaat Alignment from CESAR CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGG-CAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaagtattgtattgtttcttcccactcacacagGGACATACTGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGAGAAGGT-CTGCATTGGCCTGGAGCATGGATCTAAAAgtacaaagctgtcctttagcatcctcaccaaacatgttcagatagcaaat Alignment from Spaln_aa2Genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgggaattgtattgtttcttcccactcacacagGGACATACTGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGAGAAGGTCTGCATTGGCCTGGAGCATGGATCTAAAAgtacaaagctgtcctttagcatcctcaccaaacatgttcagatagcaaat Alignment from Spaln_nt2Genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGC-AGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgggaattgtattgtttcttcccactcacacagGGACATACTGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGAGAAGGTC-TGCATTGGCCTGGAGCATGGATCTAAAAgtacaaagctgtcctttagcatcctcaccaaacatgttcagatagcaaat Alignment from Pairagon CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGG-CAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgggaattgtattgtttcttcccactcacacagGGACATACTGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGAGAAGGTC-TGCATTGGCCTGGAGCATGGATCTAAAAgtacaaagctgtcctttagcatcctcaccaaacatgttcagatagcaaat Alignment from Exonerate_protein2genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgggaattgtattgtttcttcccactcacacagGGACATACTGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGAGAAGGTCTGCATTGGCCTGGAGCATGGATCTAAAAgtacaaagctgtcctttagcatcctcaccaaacatgttcagatagcaaat Alignment from Exonerate_coding2genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgggaattgtattgtttcttcccactcacacagGGACATACTGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGAGAAGGTCTGCATTGGCCTGGAGCATGGATCTAAAAgtacaaagctgtcctttagcatcctcaccaaacatgttcagatagcaaat Alignment from GeneWise CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgggaattgtattgtttcttcccactcacacagGGACATACTGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCCAACTCTGCCTGTGGGATGGAGAAGGTCTGCATTGGCCTGGAGCATGGATCTAAAAgtacaaagctgtcctttagcatcctcaccaaacatgttcagatagcaaat #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAAC-ATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtggccccccatgtcataaacctgtgtgttcactttccacagatGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATATACAGTATTTCCAGTTGTGGTA-TAAATCTAGCCGCTTTGGCAGGTGTATGgtaaatattctgggtagaggatactatttttcttactttggttatgggaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAAC-ATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtggccccccatgtcataaacctgtgtgttcactttccacagatGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATATACAGTATTTCCAGTTGTGGT-ATAAATCTAGCCGCTTTGGCAGGTGTATGgtaaatattctgggtagaggatactatttttcttactttggttatgggaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtggccccccatgtcataaacctgtgtgttcactttccacagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATATACAGTATTTCCAGTTGTGGTATAAATCTAGCCGCTTTGGCAGGTGTATGgtaaatattctgggtagaggatactatttttcttactttggttatgggaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAA-CATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtggccccccatgtcataaacctgtgtgttcactttccacagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATATACAGTATTTCCAGTTGTGGTA-TAAATCTAGCCGCTTTGGCAGGTGTATGgtaaatattctgggtagaggatactatttttcttactttggttatgggaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAA-CATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtggccccccatgtcataaacctgtgtgttcactttccacagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATATACAGTATTTCCAGTTGTGGTA-TAAATCTAGCCGCTTTGGCAGGTGTATGgtaaatattctgggtagaggatactatttttcttactttggttatgggaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAAC-ATGATCTACATCTATAGTGTTTCCAGTTGTGGC--ACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtggccccccatgtcataaacctgtgtgttcactttccacagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATATACAGTATTTCCAGTTGTGGTAT---AAATCTAGCCGCTTTGGCAGGTGTATGgtaaatattctgggtagaggatactatttttcttactttggttatgggaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAAC-ATGATCTACATCTATAGTGTTTCCAGTTGTGGC--ACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtggccccccatgtcataaacctgtgtgttcactttccacagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATATACAGTATTTCCAGTTGTGGTAT---AAATCTAGCCGCTTTGGCAGGTGTATGgtaaatattctgggtagaggatactatttttcttactttggttatgggaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtggccccccatgtcataaacctgtgtgttcactttccacagATGGGTTGTACCTTGCAATAGGTTCACATGACAACCATGATCTACATATACAGTATTTCCAGTTGTGGTATAAATCTAGCCGCTTTGGCAGGTGTATGgtaaatattctgggtagaggatactatttttcttactttggttatgggaa #### Eml3_ID2522_21 --> 2 - 0 Original Alignment gtGTGTGGCCTGATGGC-TCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccaggtGTATGGCCTGGTGGCCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACA-TGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from CESAR gtGTGTGGCCTGATGGC-TCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccaggtGTATGGCCTGGTGGCCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCAC-ATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Spaln_aa2Genome GTGTGTGGCCTGATGGC-TCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCcTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAT-GAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Spaln_nt2Genome GTGTGTGGCCTGATGGC-TCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCAC-ATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Pairagon GTGTGTGGCCTGATGG-CTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCA---------------------------------------------------- agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCAC-ATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCATGTGCTCGGGCCAAAGTAGAGCTCCATGAGCCCATTGGGCCCAGGTACGAACAGTTGCAGTTCCT Alignment from Exonerate_protein2genome GTGTGTGGCCTGATGGC-TCTGATGGGACAGACATCAACTCCCTTTGCCGCTCC--CACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAT---GAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Exonerate_coding2genome GTGTGTGGCCTGATGGC-TCTGATGGGACAGACATCAACTCCCTTTGCCGCTCC--CACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAT---GAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from GeneWise GTCTATGGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTG------GCCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAT-GAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAG-GAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctgtcacatgggttgcaggccactcttgctgaatttctttcttttgaaaggtGAACGTCTGTGCAACTTGGAACGAAGGCAGTCCTGGCAGTGGAACCTACACCTGGCATGGCT-CATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtgagtaaagtggctccctaggctgtgctctctctcccactgagtcctca Alignment from CESAR gcGAACGTCTGTGTAACTTGGAG-GAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctgtcacatgggttgcaggccactcttgctgaatttctttcttttgaaaggtGAACGTCTGTGCAACTTGGAACGAAGGCAGTCCTGGCAGTGGAACCTACACCTGGCATGGC-TCATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtgagtaaagtggctccctaggctgtgctctctctcccactgagtcctca Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctgtcacatgggttgcaggccactcttgctgaatttctttcttttgaaagGTGAACGTCTGTGCAACTTGGAACGAAGGCAGTCCTGGCAGTGGAACCTACACCTGGCATGGCTCATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtgagtaaagtggctccctaggctgtgctctctctcccactgagtcctca Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAG-GAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctgtcacatgggttgcaggccactcttgctgaatttctttcttttgaaagGTGAACGTCTGTGCAACTTGGAACGAAGGCAGTCCTGGCAGTGGAACCTACACCTGGCATGGCT-CATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtgagtaaagtggctccctaggctgtgctctctctcccactgagtcctca Alignment from Pairagon --------------------------------------------------GCGAACGTCTGTGTAACTTGGAG-GAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG CTGTCACATGGGTTGCAGGCCACTCTTGCTGAATTTCTTTCTTTTGAAAGGTGAACGTCTGTGCAACTTGGAACGAAGGCAGTCCTGGCAGTGGAACCTACACCTGGCATGGCT-CATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtgagtaaagtggctccctaggctgtgctctctctcccactgagtcctca Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAG-GAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGC--TACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctgtcacatgggttgcaggccactcttgctgaatttctttcttttgaaagGTGAACGTCTGTGCAACTTGGAACGAAGGCAGTCCTGGCAGTGGAACCTACACCTGGCATGGCTC---ATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtgagtaaagtggctccctaggctgtgctctctctcccactgagtcctca Alignment from Exonerate_coding2genome ctgtcacatgggttgcaggccactcttgctgaatttctttcttttgaaaggtgaacgtctgtgcaacttggaacgaaggcagtcctggcagtggaacctacacctggcatggctcatcttttcatcattggctggctgtcctatgaagaccagtgagaatggtgcagtgagtaaagtggctccctaggctgtgctctctctcccactgagtcctca Alignment from GeneWise GCACCACCGGTGAGGTACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG caggccactcttgctgaatttc---------------TTTCTTTTGAAAGGTGAACGTCTGTGCAACTTGGAACGAAGGCAGTCCTGGCAGTGGAACCTACACCTGGCATGGCTCATCTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtgagtaaagtggctccctaggctgtgctctctctcccactgagtcctca #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAAC-CACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCCATCTCTTCCTCTTGGTATACCTACTTCGCATTC-ACTGCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAAC-CACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCCATCTCTTCCTCTTGGTATACCTACTTCGCATT-CACTGCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCCATCTCTTCCTCTTGGTATACCTACTTCGCATTCACTGCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACC-ACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCCATCTCTTCCTCTTGGTATACCTACTTCGCATTC-ACTGCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAA-CCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCCATCTCTTCCTCTTGGTATACCTACTTCGCATTC-ACTGCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCCATCTCTTCCTCTTGGTATACCTACTTCGCATTCACTGCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCCATCTCTTCCTCTTGGTATACCTACTTCGCATTCACTGCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCCATCTCTTCCTCTTGGTATACCTACTTCGCATTCACTGCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC---TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGCTTGTCAGTCTTTGGCACCT-ATCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC--TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGCTTGTCAGTCTTTGGCACCTATCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC--TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATcGACTTTGGGCGCTTGTCAGTCTTTGGCACCtaTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACCT--CGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGCTTGTCAGTCTTTGGCACCTATCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC--TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGCTTGTCAGTCTTTGGCACCTATCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC--TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGCTTGTCAGTCTTTGGCACCTATCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCAT-GACTTTGGGCACCTGTCAGTCTTTGGCACC--TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGCTTGTCAGTCTTTGGCACCTATCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTG---TCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATCGACTTTGGGCGCTTGTCAGTCTTTGGCACCTATCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTC-AGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCCAGTTTCTATGCCCGCATCTTTTTAGCTTATATAT-ACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTaggtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from CESAR GACTTGGCCTGGATGCTC-AGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCCAGTTTCTATGCCCGCATCTTTTTAGCTTATATA-TACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTaggtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCT-CAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCCAGTTTCTATGCCCGCATCTTTTTAGCTTATAT-ATACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Pairagon GACTTGGCCTGGATGCT-CAGCTTCTATGCCCGCATCTTCTTCACTTA----------CATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATACTCCCA-----------GGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTG-ACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGATGAACCATATCTCCATGCACATTG-TCCAGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTG-ACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGATGAACCATATCTCCATGCACATT-GTCCAGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGATGAACCATATCTCCATGCACATTGTCCAGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTG-ACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGATGAACCATATCTCCATGCACATTG-TCCAGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTG-ACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGATGAACCATATCTCCATGCACATTGTCCA-GACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGATGAACCATATCTCCATGCACATTGTCCAGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGATGAACCATATCTCCATGCACATTGTCCAGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTG---ACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGCACACAGATGAACCATATCTCCATGCACATTGTCCA---GACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAACTAC-CACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta atgcagcagtatgtaagcccctacattacctgtacttttccccactacagtGTCTTCCCCACAATGCCTCACCACAACTACCCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATG-CATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTAC-CACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta atgcagcagtatgtaagcccctacattacctgtacttttccccactacagtGTCTTCCCCACAATGCCTCACCACAACTACCCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTAT-GCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACC-ACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATG-CATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTA-CCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTAT-GCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTAC-CACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTAC--GGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGC---ATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Exonerate_coding2genome atgcagcagtatgtaagcccctacattacctgtacttttccccactacagtgtcttccccacaatgcctcaccacaactacccacaaggtgacaccagtagtacaatccctatgtgccaagtatgcataaagtatgagtctaaacccctgcttgcagcttttgcagacattgtttagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from GeneWise atgcagcagtatgtaagcccctacattacctgtacttttccccactacagtgtcttccccacaatgcctcaccacaactacccacaaggtgacaccagtagtacaatccctatgtgccaagtatgcataaagtatgagtctaaacccctgcttgcagcttttgcagacattgtttagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTC-CGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATTTCCCGTCACTTCAAGCATCATGCCAAGCCCA-CATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggacaattttt Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTC-CGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATTTCCCGTCACTTCAAGCATCATGCCAAGC-CCACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggtgtctctca Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATTTCCCGTCACTTCAAGCATCATGCCAAGCCCACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggacaattttt Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAA-TTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATTTCCCGTCACTTCAAGCATCATGCCAAGCCC-ACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggacaattttt Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTT-CCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATTTCCCGTCACTTCAAGCATCATGCCAAGCCC-ACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggacaattttt Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATTTCCCGTCACTTCAAGCATCATGCCAAGCCCACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggacaattttt Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATTTCCCGTCACTTCAAGCATCATGCCAAGCCCACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggacaattttt Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcgggctggaacacaacaattcagcagatgtcatgttttctatctcagGATTTTTCTGCCCACTGGTGGAATTTCCCGTCACTTCAAGCATCATGCCAAGCCCACATATTCCACAAAGACCCTGATGTGACTGTTGCGCCTGTCTTCCTTCTTGGTGTGTCATCTGTAGAAgtaagtggtagtttctgagcccagagagctgttctccctggacaattttt #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGC-TTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACCTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGA-ACTAATCCTCTTTGTTGCTGTCaggtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGC-TTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACCTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGG-AACTAATCCTCTTTGTTGCTGTCaggtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGC-TTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACcTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGAA-CTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCT-TGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACCTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGA-ACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCG-CTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACCTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGA-ACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGC-TTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGG--ACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACCTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGAA---CTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGC-TTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGG--ACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACCTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGAA---CTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCC-CGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACCTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGAA-CTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATG-AAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGCAAACAGCAGGTGTTAGTACTTTATACCAAACTTC-TGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from CESAR TGCCCTCCAGGAATG-AAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGCAAACAGCAGGTGTTAGTACTTTATACCAAACTTCTG-AGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Spaln_aa2Genome TGCCCTCCAGGAATG-AAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGcAAACAGCAGGTGTTAGTACTTTATACCAAACTTCTGAG-CGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Spaln_nt2Genome TGCCCTCCAGGAATG-AAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGCAAACAGCAGGTGTTAGTACTTTATACCAAACTTCTGAG-CGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Pairagon AGCCGACTGCCCTCCAGGAATG-AAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatag-------TGCCCTCCAGGAATGCAAACAGCAGGTGTTAGTACTTTATACCAAACTTCTGAG-CGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGCAAACAGCAGGTGTTAGTACTTTATACCAAACTTCTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGCAAACAGCAGGTGTTAGTACTTTATACCAAACTTCTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGCAAACAGCAGGTGTTAGTACTTTATACCAAACTTCTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCC-CTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGG-CATTGAAACTGTGGAGGCAGTAAACTGGgggtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCC-CTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTG-GCATTGAAACTGTGGAGGCAGTAAACTGGgggtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGCATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCC-CTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGG-CATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCT-CCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTT-GGCATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGCATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGCATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGCATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGAC-GCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcaggTTGGACTCATACAGCCACAAAGAAGACCACTTCGGCGTTCCCGGGGAAGCGGGCCTTAA-TGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGAC-GCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcaggTTGGACTCATACAGCCACAAAGAAGACCACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATG-CGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACCACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACG-CTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACCACTTCGGCGTTCCCGGGGAAGCGGGCCTTAA-TGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGA-CGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACCACTTCGGCGTTCCCGGGGAAGCGGGCCTTAA-TGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACCACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACCACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tcctttgtccagatcttgtgaacctttaccccctcctctttcttcggcagGTTGGACTCATACAGCCACAAAGAAGACCACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgaggagcttgatattatcttcatagtgtttgtggtcattgagccgtct #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAA-GCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCAAACGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGG-ACCCCAGCTGATGCAGacgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAA-GCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCAAACGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGACC-CCAGCTGATGCAGacgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAA-GCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCAAAcGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGA-CCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAA-GCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCAAACGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGA-CCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAA-GCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCAAACGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGG-ACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCAAACGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagcatggatgttataagtcttctatcgctttggtttcctttgcagACGGCTGCTGTAGCTCTTGCCAAACGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGGACCCCAGCTGATGCAGACgtgagtgtcttctgactttgtgggagacaaactctgctgtatcttttcct Alignment from GeneWise -GCCATCCACGAAAGGTTCTTTGT attatagcatggatgttataagtcttctatcgctttggtttcctttgcagacggctgctgtagctcttgccaaacgctatccacaaaaggttctttgttggtgttatggaccccagctgatgcagacgtgagtgtcttctgactttgtgggagACAAACTCTGCTGTATCTTTTCCT #### Fam160b1_ID12365_16 --> 0 - 2 Original Alignment GTTGTTGGTGACCTCATGGTT-CGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCat aataaagtatggtactgtggaaccgtataacaatgccctttgcccctcagGTTGTTGGTGATCTCATGGTTCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCTGG-CAGAAAGCGACTGCTTGGCTTGGAGCCTGAAGGCCCCatgtaagtgaaagcttcataaattttttgtaaggaatcctcttgtttggcgt Alignment from CESAR GTTGTTGGTGACCTCATGGTT-CGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCat aataaagtatggtactgtggaaccgtataacaatgccctttgcccctcagGTTGTTGGTGATCTCATGGTTCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCTG-GCAGAAAGCGACTGCTTGGCTTGGAGCCTGAAGGCCCCatgtaagtgaaagcttcataaattttttgtaaggaatcctcttgtttggcgt Alignment from Spaln_aa2Genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT aataaagtatggtactgtggaaccgtataacaatgccctttgcccctcagGTTGTTGGTGATCTCATGGTTCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCTGGCAGAAAGCGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtaagtgaaagcttcataaattttttgtaaggaatcctcttgtttggcgt Alignment from Spaln_nt2Genome GTTGTTGGTGACCTCATGGTTCGAA-TCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT aataaagtatggtactgtggaaccgtataacaatgccctttgcccctcagGTTGTTGGTGATCTCATGGTTCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCTGG-CAGAAAGCGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtaagtgaaagcttcataaattttttgtaaggaatcctcttgtttggcgt Alignment from Pairagon GTTGTTGGTGACCTCATGGTT-CGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT aataaagtatggtactgtggaaccgtataacaatgccctttgcccctcagGTTGTTGGTGATCTCATGGTTCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCTGG-CAGAAAGCGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtaagtgaaagcttcataaattttttgtaaggaatcctcttgtttggcgt Alignment from Exonerate_protein2genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT aataaagtatggtactgtggaaccgtataacaatgccctttgcccctcagGTTGTTGGTGATCTCATGGTTCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCTGGCAGAAAGCGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtaagtgaaagcttcataaattttttgtaaggaatcctcttgtttggcgt Alignment from Exonerate_coding2genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT aataaagtatggtactgtggaaccgtataacaatgccctttgcccctcagGTTGTTGGTGATCTCATGGTTCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCTGGCAGAAAGCGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtaagtgaaagcttcataaattttttgtaaggaatcctcttgtttggcgt Alignment from GeneWise GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT aataaagtatggtactgtggaaccgtataacaatgccctttgcccctcagGTTGTTGGTGATCTCATGGTTCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCTGGCAGAAAGCGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtaagtgaaagcttcataaattttttgtaaggaatcctcttgtttggcgt #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGAC-GTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagaCTCCTAGATCTGCCTTGGGAAGATCTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTC-ACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGAC-GTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagaCTCCTAGATCTGCCTTGGGAAGATCTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTC-ACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATCTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGA-CGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATCTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCA-CTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGA-CGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATCTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCA-CTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATCTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATCTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATCTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatcagtcaggggatggacaagctgttcttttcctgcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGC-CCAAGGTGTTTCCCAACAAgttagtagctggggtttgtttatccattccaggcttggtctgttgtactt Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatcagtcaggggatggacaagctgttcttttcctgcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGC-CCAAGGTGTTTCCCAACAAgttagtagctggggtttgtttatccattccaggcttggtctgttgtactt Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatcagtcaggggatggacaagctgttcttttcctgcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCAAGGTGTTTCCCAACAAgttagtagctggggtttgtttatccattccaggcttggtctgttgtactt Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatcagtcaggggatggacaagctgttcttttcctgcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAG-CCCAAGGTGTTTCCCAACAAgttagtagctggggtttgtttatccattccaggcttggtctgttgtactt Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatcagtcaggggatggacaagctgttcttttcctgcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAG-CCCAAGGTGTTTCCCAACAAgttagtagctggggtttgtttatccattccaggcttggtctgttgtactt Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatcagtcaggggatggacaagctgttcttttcctgcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCAAGGTGTTTCCCAACAAgttagtagctggggtttgtttatccattccaggcttggtctgttgtactt Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatcagtcaggggatggacaagctgttcttttcctgcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCAAGGTGTTTCCCAACAAgttagtagctggggtttgtttatccattccaggcttggtctgttgtactt Alignment from GeneWise CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatcagtcaggggatggacaagctgttcttttcctgCAGGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCAAGGTGTTTCCCAACAAgttagtagctggggtttgtttatccattccaggcttggtctgttgtactt #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCG-CCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagtgAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCCAAAGCTCCTA------CTTGTCTTTC-GATTCCTCCTGCCCGACAGACTCTCCTCATTGAAaggtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCG-CCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagtgAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCCAAAGCTCCTA------CTTGTCTTT-CGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAaggtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCCAAAGCTCCTACTTGTCTT------TCGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCCAA-----AGCTCCTACTTGTCTTTC-GATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCA-------------------GATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTAC-------------------------GTTCACCCCCCAAAGCTCCTACTTGTCTTTCGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCCAAAGCT------CCTACTTGTCTTTCGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCCAAAGCT------CCTACTTGTCTTTCGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttatacttgtgcctcgcctctctccgcagTGAATGATGCAGTGGCTCTACATGTGCGCTCTGGCATTTTAGAACAGACTGGGGCCACCACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTTCACCCCCCAAAGCT------CCTACTTGTCTTTCGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtaagtaacagggtggttagtggggtgggtactggccagagggtcatcag #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTG-AGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagacagataaagagcatatccacactaactctttttccaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGAAAAAAAAGGCTGCAGCACCTGCAGCTTCGGGGACTTTGCCTTCTGTGCAGAAC-CATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtaatgaagctccatacccctcatggtactagttatcttgtatcagtttc Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTG-AGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagacagataaagagcatatccacactaactctttttccaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGAAAAAAAAGGCTGCAGCACCTGCAGCTTCGGGGACTTTGCCTTCTGTGCAGAA-CCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtaatgaagctccatacccctcatggtactagttatcttgtatcagtttc Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagacagataaagagcatatccacactaactctttttccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGAAAAAAAAGGCTGCAGCACCTGCAGCTTCGGGGACTTTGCCTTCTGTGCAGAACCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaatgaagctccatacccctcatggtactagttatcttgtatcagtttc Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTG-AGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagacagataaagagcatatccacactaactctttttccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGAAAAAAAAGGCTGCAGCACCTGCAGCTTCGGGGACTTTGCCTTCTGTGCAGAAC-CATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaatgaagctccatacccctcatggtactagttatcttgtatcagtttc Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTG-AGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagacagataaagagcatatccacactaactctttttccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGAAAAAAAAGGCTGCAGCACCTGCAGCTTCGGGGACTTTGCCTTCTGTGCAGAAC-CATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaatgaagctccatacccctcatggtactagttatcttgtatcagtttc Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagacagataaagagcatatccacactaactctttttccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGAAAAAAAAGGCTGCAGCACCTGCAGCTTCGGGGACTTTGCCTTCTGTGCAGAACCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaatgaagctccatacccctcatggtactagttatcttgtatcagtttc Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagacagataaagagcatatccacactaactctttttccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGAAAAAAAAGGCTGCAGCACCTGCAGCTTCGGGGACTTTGCCTTCTGTGCAGAACCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaatgaagctccatacccctcatggtactagttatcttgtatcagtttc Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagacagataaagagcatatccacactaactctttttccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGAAAAAAAAGGCTGCAGCACCTGCAGCTTCGGGGACTTTGCCTTCTGTGCAGAACCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaatgaagctccatacccctcatggtactagttatcttgtatcagtttc #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagcCTAGTTTGCACTCGCCCTTCGTGGAAAGCTCGGTGTCTTCTCTG-GATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from CESAR cCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagcCTAGTTTGCACTCGCCCTTCGTGGAAAGCTCGGTGTCTTCTCT-GGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Spaln_aa2Genome CCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTcGCCCTTCGTGGAAAGCTCGGTGTCTTCTCTGG-ATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Spaln_nt2Genome CCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTCGCCCTTCGTGGAAAGCTCGGTGTCTTCTCTG-GATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Pairagon CCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTCGCCCTTCGTGGAAAGCTCGGTGTCTTCTCTG-GATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTCGCCCTTCGTGGAAAGCTCGGTGTCTTCTCTGGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from Exonerate_coding2genome cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagcctagtttgcactcgcccttcgtggaaagctcggtgtcttctctggatggaaaccaacttcaaggtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cctaggttacaacactcagtctatagaatttcctaacaaaaatattaaagCCTAGTTTGCACTCGCCCTTCGTGGAAAGCTCGGTGTCTTCTCTGGATGGAAACCAACTTCAAGgtatggtgacttgggagtcacagtcctctgcatagatcaccgagtgacct #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTT-GTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCT-GGACCAGGGTCTACTGgggtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTT-GTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCT-GGACCAGGGTCTACTGgggtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTT-GTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTcATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGAC-CAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCC-TTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCT-GGACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTT-GTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCT-GGACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAG-CCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGACCAGGGTCTACTGGGGtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTT---GTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATCTT--CTCCCTTGGCACTGGCCAGGTTATCAAGGGCTG-GACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTT-GTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTCATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGACCAGGgtctactggggtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt #### Fth1_ID2623_2 --> 0 - 0 Original Alignment TCTTGTTATTTTGACCGAGATGATGTGGCT-CTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCCTGAAAAACTTTGCCAAATACTTTCTCCACCAAT-TCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCGAATTTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from CESAR TCTTGTTATTTTGACCGAGATGATGTGGCT-CTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCCTGAAAAACTTTGCCAAATACTTTCTCCACCAA-TTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCGAATTTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Spaln_aa2Genome TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCCTGAAAAACTTTGCCAAATACTTTCTCCACCAATTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCGAATTTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Spaln_nt2Genome TCTTGTTATTTTGACCGAGATGATGTGGCT-CTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCCTGAAAAACTTTGCCAAATACTTTCTCCACCAAT-TCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCGAATTTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Pairagon TCTTGTTATTTTGACCGAGATGATGTGGCT-CTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCCTGAAAAACTTTGCCAAATACTTTCTCCACCAAT-TCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCGAATTTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Exonerate_protein2genome TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCCTGAAAAACTTTGCCAAATACTTTCTCCACCAATTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCGAATTTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from Exonerate_coding2genome TCTTGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCCTGAAAAACTTTGCCAAATACTTTCTCCACCAATTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCGAATTTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg Alignment from GeneWise ---TGTTATTTTGACCGAGATGATGTGGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAG agtactattccctgttgaagactggcaacttttctctctaatcctcccagTCTTGTTATTTCGATCGAGATGATGTGGCTCCTGAAAAACTTTGCCAAATACTTTCTCCACCAATTCATGAGGAGAGGGAGCATGCCGAGAAACTGATGAAGTTGCGGAACCAGCGAGGGGGCCGAATTTTCCTGCAGGATATAAAGgtcagtaggagcggttctactctgattcagtaaatgatgatgtgttgagg #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGAT-GACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgatgtggaagcccatcgcccccagAAACCGGACCGTGATCGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCGC-GCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCATgtaagaaccagttggttggaggagatgaattgctaggacctggggagacc Alignment from CESAR AAACCAGACCGTGAT-GACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgatgtggaagcccatcgcccccagAAACCGGACCGTGATCGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCG-CGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCATgtaagaaccagttggttggaggagatgaattgctaggacctggggagacc Alignment from Spaln_aa2Genome AAACCAGACCGTGAT-GACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgatgtggaagcccatcgcccccagAAACCGGACCGTGATcGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCGCG-CACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCATgtaagaaccagttggttggaggagatgaattgctaggacctggggagacc Alignment from Spaln_nt2Genome AAACCAGACCGTGAT-GACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgatgtggaagcccatcgcccccagAAACCGGACCGTGATCGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCGC-GCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCATgtaagaaccagttggttggaggagatgaattgctaggacctggggagacc Alignment from Pairagon AAACCAGACCGTGAT-GACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgatgtggaagcccatcgcccccagAAACCGGACCGTGATCGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCGC-GCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCATgtaagaaccagttggttggaggagatgaattgctaggacctggggagacc Alignment from Exonerate_protein2genome AAACCAGACCGTGAT-GACTGGGAGAGCGGGCTGAATGCAATGGAG--TGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgatgtggaagcccatcgcccccagAAACCGGACCGTGATCGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCGCG---CACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCATgtaagaaccagttggttggaggagatgaattgctaggacctggggagacc Alignment from Exonerate_coding2genome AAACCAGACCGTGAT-GACTGGGAGAGCGGGCTGAATGCAATGGAG--TGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgatgtggaagcccatcgcccccagAAACCGGACCGTGATCGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCGCG---CACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCATgtaagaaccagttggttggaggagatgaattgctaggacctggggagacc Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgatgtggaagcccatcgcccccagAAACCGGACCGTGATCGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCGCGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCATgtaagaaccagttggttggaggagatgaattgctaggacctggggagacc #### Gal_ID62_4 --> 2 - 1 Original Alignment gaAGTGTTGATGTGCCCCTG-CCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagggAGTGTTGATGTGCCCCTGCCCCGAAAGTATCATTGTTCGCACTATAATGGAGTTTCTCA-TTTCTTGCACCTTAAAggtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from CESAR gaAGTGTTGATGTGCCCCTG-CCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagggAGTGTTGATGTGCCCCTGCCCCGAAAGTATCATTGTTCGCACTATAATGGAGTTTCTC-ATTTCTTGCACCTTAAAggtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Spaln_aa2Genome GAAGTGTTGATGTGCCCCTGCCT-GAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCcGAAAGTATCATTGTTCGCACTATAATGGAGTTTCTCAT-TTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Spaln_nt2Genome GAAGTGTTGATGTGCCCCTGCCT-GAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCCGAAAGTATCATTGTTCGCACTATAATGGAGTTTCTCA-TTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Pairagon GAAGTGTTGATGTGCCCCTG-CCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCCGAAAGTATCATTGTTCGCACTATAATGGAGTTTCTCA-TTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Exonerate_protein2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCCGAAAGTATCATTGTTCGCACTATAATGGAGTTTCTCATTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from Exonerate_coding2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCCGAAAGTATCATTGTTCGCACTATAATGGAGTTTCTCATTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca Alignment from GeneWise GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG ataggggggggtcaggaagtggctgtaatgacactgctctgtcctttcagGGAGTGTTGATGTGCCCCTGCCCCGAAAGTATCATTGTTCGCACTATAATGGAGTTTCTCATTTCTTGCACCTTAAAGgtgggttgacaacctttctctagagtgtctacattgattggctgccttca #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGT-TTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga taaggaattcggcaggcccgaagagtcgtctaagcttcatctccttttaggtCCCATGTCTGTTGGTCTTGGACTTTTCTCTGCCATGGATGGAACATGCAT-TGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTgagtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from CESAR gcCCCACGTCTGTAGGT-TTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga tactgaattcggcaggcccgaagagtcgtctaagcttcatctccttttaggtCCCATGTCTGTTGGTCTTGGACTTTTCTCTGCCATGGATGGAACATGCA-TTGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTgagtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTG-GACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaggaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTCTTgGACTTTTCTCTGCCATGGATGGAACATGCATT-GGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGT-TTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaggaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTCTTGGACTTTTCTCTGCCATGGATGGAACATGCAT-TGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Pairagon GCCCCACGTCTGTAGGT-TTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaggaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTCTTGGACTTTTCTCTGCCATGGATGGAACATGCAT-TGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaggaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTCTTGGACTTTTCTCTGCCATGGATGGAACATGCATTGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaggaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTCTTGGACTTTTCTCTGCCATGGATGGAACATGCATTGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from GeneWise -------------------------------------------------GGCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA TAAGGAATTCGGCAGGCCCGAAGAGTCGTCTAAGCTTCATCTCCTTTTAGGTCCCATGTCTGTTGGTCTTGGACTTTTCTCTGCCATGGATGGAACATGCATTGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCT-GAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATGAACCCTCTGTGTTCAATGGTCCTCGAGGTCACCATGTTGAAGGATGCAGTGC-TTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCT-GAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATGAACCCTCTGTGTTCAATGGTCCTCGAGGTCACCATGTTGAAGGATGCAGTG-CTTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATGAACCCTCTGTGTTCAATGGTCCTCGAGGTCACCATGTTGAAGGATGCAGTGCTTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCT-GAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATGAACCCTCTGTGTTCAATGGTCCTCGAGGTCACCATGTTGAAGGATGCAGTGC-TTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCT-GAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATGAACCCTCTGTGTTCAATGGTCCTCGAGGTCACCATGTTGAAGGATGCAGTGC-TTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATGAACCCTCTGTGTTCAATGGTCCTCGAGGTCACCATGTTGAAGGATGCAGTGCTTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATGAACCCTCTGTGTTCAATGGTCCTCGAGGTCACCATGTTGAAGGATGCAGTGCTTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATGAACCCTCTGTGTTCAATGGTCCTCGAGGTCACCATGTTGAAGGATGCAGTGCTTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATC-TCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg tactgtttcgtgggcaatcaggaccatctgtgcctttcctctgattgcaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCCTCTATCCATATGTGTCTCAGCTTGGCATTGG-GGGGCTTTCCTTCTGTGGAggtaggggaagtaaacatttggggtattgcattggatgtttgtggttttgt Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATC-TCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg tactgtttcgtgggcaatcaggaccatctgtgcctttcctctgattgcaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCCTCTATCCATATGTGTCTCAGCTTGGCATTG-GGGGGCTTTCCTTCTGTGGAggtaggggaagtaaacatttggggtattgcattggatgtttgtggttttgt Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATC-TCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccatctgtgcctttcctctgattgcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCcTCTATCCATATGTGTCTCAGCTTGGCATTGGG-GGGCTTTCCTTCTGTGGAGgtaggggaagtaaacatttggggtattgcattggatgtttgtggttttgt Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGAT-CTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccatctgtgcctttcctctgattgcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCCTCTATCCATATGTGTCTCAGCTTGGCATTGGGGGGCTTTCCT-TCTGTGGAGgtaggggaagtaaacatttggggtattgcattggatgtttgtggttttgt Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGAT-CTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccatctgtgcctttcctctgattgcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCCTCTATCCATATGTGTCTCAGCTTGGCATTGG-GGGGCTTTCCTTCTGTGGAGgtaggggaagtaaacatttggggtattgcattggatgtttgtggttttgt Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccatctgtgcctttcctctgattgcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCCTCTATCCATATGTGTCTCAGCTTGGCATTGGGGGGCTTTCCTTCTGTGGAGgtaggggaagtaaacatttggggtattgcattggatgtttgtggttttgt Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccatctgtgcctttcctctgattgcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCCTCTATCCATATGTGTCTCAGCTTGGCATTGGGGGGCTTTCCTTCTGTGGAGgtaggggaagtaaacatttggggtattgcattggatgtttgtggttttgt Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccatctgtgcctttcctctgattgcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCCTCTATCCATATGTGTCTCAGCTTGGCATTGGGGGGCTTTCCTTCTGTGGAGgtaggggaagtaaacatttggggtattgcattggatgtttgtggttttgt #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtataacattgtatcttctatatctattttttccaggtGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGC-CGGCCAAGAAGAAgtaagtcaccaaatatagcagcccaagggacccaaaaggacaaaaacata Alignment from CESAR gtGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtataacattgtatcttctatatctattttttccaggtGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGC-CGGCCAAGAAGAAgtaagtcaccaaatatagcagcccaagggacccaaaaggacaaaaacata Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtataacattgtatcttctatatctattttttccagGTGACACACTCCTTATTCATCCTcGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCGGC-CAAGAAGAAgtaagtcaccaaatatagcagcccaagggacccaaaaggacaaaaacata Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtataacattgtatcttctatatctattttttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCC-GGCCAAGAAGAAgtaagtcaccaaatatagcagcccaagggacccaaaaggacaaaaacata Alignment from Pairagon GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtataacattgtatcttctatatctattttttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCC-GGCCAAGAAGAAgtaagtcaccaaatatagcagcccaagggacccaaaaggacaaaaacata Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGA ggttgcataagtgtgtataacattgtatcttctatatctattttttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCGGCCAAGAAGAAgtaagtcaccaaatatagcagcccaagggacccaaaaggacaaaaacata Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGA ggttgcataagtgtgtataacattgtatcttctatatctattttttccagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCGGCCAAGAAGAAgtaagtcaccaaatatagcagcccaagggacccaaaaggacaaaaacata Alignment from GeneWise CTTGGTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtataacattgtatcttctatatctattttttccagGTGACACACTCCTTATTCATC---CTCGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCGGC-CAAGAAGAAgtaagtcaccaaatatagcagcccaagggacccaaaaggacaaaaacata #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAG-AACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from CESAR GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTACCA-GAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATcCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGA-ACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAG-AACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAG-AACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAG gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAG gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGT-GGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGCGGTGGAACCATTGTGCCTCGATGGATGCGTG-CAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from CESAR ATCCCCGTGTTCCAGCGT-GGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGCGGTGGAACCATTGTGCCTCGATGGATGCGTG-CAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGT-GGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGcGGTGGAACCATTGTGCCTCGATGGATGCGTGC-AGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGT-GGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGCGGTGGAACCATTGTGCCTCGATGGATGCGTG-CAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Pairagon ATCCCCGTGTTCCAGC-GTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGCGGTGGAACCATTGTGCCTCGATGGATGCGTGC-AGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGCGGTGGAACCATTGTGCCTCGATGGATGCGTGCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGG---AACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGG--CGGTGGAACCATTGTGCCTCGATGGATGCGTGC-AGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGCGGTGGAACCATTGTGCCTCGATGGATGCGTGCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTC-CTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCCTCAATGCCCTCAACCAGCAAGAGAAAAAAG-AACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGtgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTC-CTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCCTCAATGCCCTCAACCAGCAAGAGAAAAAAG-AACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGtgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAG-TCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCCTCAATGCCCTCAACCAGCAAGAGAAAAAAGA-ACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAG-TCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCCTCAATGCCCTCAACCAGCAAGAGAAAAAAGA-ACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTA-GATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagctGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGCGATGCACGAGGTCTTTATTTTCCCAGTGGAGGGT-GTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTA-GATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagctGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGCGATGCACGAGGTCTTTATTTTCCCAGTGGAGGG-TGTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCcgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTA-GATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGcGATGCACGAGGTCTTTATTTTCCCAGTGGAGGGTGTTG----ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTA-GATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGCGATGCACGAGGTCTTTATTTTCCCAGTGGAGGGT-GTTG---ACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTA-GATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGCGATGCACGAGGTCTTTATTTTCCCAGTGGAGGG----TGTTGACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGCGATGCACGAGGTCTTTATTT---TCCCAGTGGAGGGTGTTGACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGCGATGCACGAGGTCTTTATTT---TCCCAGTGGAGGGTGTTGACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGG---TTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatgaatgctgccagcctcctcccttctagCTGAGAGAGCGACCAGTGATGGGAAATCCACAGGGGTGGCCTTGCGATGCACGAGGTCTTTATTTTCCCAG------TGGAGGGTGTTGACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCAGGTGACTCTAGCCgtacaaatgtccagtatattgtctctaactgagcctcccagtcaatgttt #### Gbf1_ID9798_17 --> 0 - 2 Original Alignment CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAG-GTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAACGTAGCCCAATGGCTCCAAGGAAACCCTCGGT-AGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGaggtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from CESAR CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAG-GTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAACGTAGCCCAATGGCTCCAAGGAAACCCTCGG-TAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGaggtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Spaln_aa2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAACGTAGCCCAATGGCTCCAAGGAAACCCTCGGTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Spaln_nt2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAG-GTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAACGTAGCCCAATGGCTCCAAGGAAACCCTCGG-TAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Pairagon CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAG-GTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAACGTAGCCCAATGGCTCCAAGGAAACCCTCGG-TAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Exonerate_protein2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAACGTAGCCCAATGGCTCCAAGGAAACCCTCGGTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Exonerate_coding2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAACGTAGCCCAATGGCTCCAAGGAAACCCTCGGTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from GeneWise CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAACGTAGCCCAATGGCTCCAAGGAAACCCTCGGTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagtACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGG-GGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from CESAR cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagtACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTG-GGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGG-GGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Pairagon CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGG-GGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCCCCATTTGCTAATAGTGAT-GCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTCGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGC-GAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGAT-GCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTCGCCTGCTTTGCCTTAGCCTATGGTGCCATCATG-CGAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTCGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCGAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGAT-GCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTCGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGC-GAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGAT-GCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTCGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGC-GAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTCGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCGAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTCGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCGAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTCGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCGAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt #### Gbf1_ID9804_23 --> 0 - 0 Original Alignment TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATC-ATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCCATGGAGGCCATGTTGCAGCTTTTCCGAGCCC-ACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from CESAR TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATC-ATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCCATGGAGGCCATGTTGCAGCTTTTCCGAGCCC-ACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Spaln_aa2Genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Spaln_nt2Genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATAT-CATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCA-CTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Pairagon TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATAT-CATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCCATGGAGGCCATGTTGCAGCTTTTCCGAGCCC-ACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Exonerate_protein2genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Exonerate_coding2genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from GeneWise TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTCGTAGACCCCAATGGCAAGATCTCTTTACAACATG-GGAGACACCATCAAACcggtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from CESAR GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTCGTAGACCCCAATGGCAAGATCTCTTTACAACAT-GGGAGACACCATCAAACcggtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtaggtagaagATT------TTCGTAGACCCCAATGGCAAGATCTCTTTACAACATGG-GAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Spaln_nt2Genome GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTCGTAGACCCCAATGGCAAGATCTCTTTACAACATG-GGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Pairagon GTAGAAGATTTT-GTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTCGTAGACCCCAATGGCAAGATCTCTTTACAACATG-GGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTCGTAGACCCCAATGGCAAGATCTCTTTACAACATGGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTCGTAGACCCCAATGGCAAGATCTCTTTACAACATGGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTCGTAGACCCCAATGGCAAGATCTCTTTACAACATGGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCAC-GCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from CESAR CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCA-CGCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCAcGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACG-CAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCAC-GCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Pairagon CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCAC-GCAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCA--CTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACG---CAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCA--CTGCAGGAGCTCATGAAG ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagCAATGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACG---CAGGAACTCATGAAGgtaaactatgaacagaacttggaaagacagaatcatgctggtgcagtgca Alignment from GeneWise ---- ttgccctgaactttcttcctttgtcacgggagtcatgtgtcatgtttcagcaatgtgacccacgaaaagatgatcacggaaagcaagttcctccagctggaatcacgcaggaactcatgaaggtaaactatgaacagaacttggaaagacagaatcatgctggtgcagTGCA #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTA-CGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccccccacacacttgatcacttacagtggattcttgtctccccacaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCCTTGACGTATCTACAGCATGCACTTCTCG-GCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAGgtgaggcctcaagtcaacagaagttcaaataacaagataaaggtggagaa Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTA-CGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccccccacacacttgatcacttacagtggattcttgtctccccacaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCCTTGACGTATCTACAGCATGCACTTCTC-GGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAGgtgaggcctcaagtcaacagaagttcaaataacaagataaaggtggagaa Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccccccacacacttgatcacttacagtggattcttgtctccccacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCCTTGACGTATCTACAGCATGCACTTCTCGGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAGgtgaggcctcaagtcaacagaagttcaaataacaagataaaggtggagaa Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACG-GATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccccccacacacttgatcacttacagtggattcttgtctccccacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCCTTGACGTATCTACAGCATGCACTTCTCG-GCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAGgtgaggcctcaagtcaacagaagttcaaataacaagataaaggtggagaa Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTA-CGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccccccacacacttgatcacttacagtggattcttgtctccccacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCCTTGACGTATCTACAGCATGCACTTCTCG-GCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAGgtgaggcctcaagtcaacagaagttcaaataacaagataaaggtggagaa Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccccccacacacttgatcacttacagtggattcttgtctccccacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCCTTGACGTATCTACAGCATGCACTTCTCGGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAGgtgaggcctcaagtcaacagaagttcaaataacaagataaaggtggagaa Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccccccacacacttgatcacttacagtggattcttgtctccccacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCCTTGACGTATCTACAGCATGCACTTCTCGGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAGgtgaggcctcaagtcaacagaagttcaaataacaagataaaggtggagaa Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccccccacacacttgatcacttacagtggattcttgtctccccacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACCGGATGCAGGCCTTGACGTATCTACAGCATGCACTTCTCGGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAGgtgaggcctcaagtcaacagaagttcaaataacaagataaaggtggagaa #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCT-GCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTCGCAGATGTAGGTGGGATGGAAGAGACTCGGATGC-GGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCT-GCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTCGCAGATGTAGGTGGGATGGAAGAGACTCGGATGC-GGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTCGCAGATGTAGGTGGGATGGAAGAGACTCGGATGCGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCT-GCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTCGCAGATGTAGGTGGGATGGAAGAGACTCGGATGC-GGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCT-GCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTCGCAGATGTAGGTGGGATGGAAGAGACTCGGATGC-GGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCT-GCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGG--GCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTCGCAGATGTAGGTGGGATGGAAGAGACTCGGATGCGGCT---TCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCT-GCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGG--GCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTCGCAGATGTAGGTGGGATGGAAGAGACTCGGATGCGGCT---TCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG ccatgcgcaacctggctgggttaatgtgaatccaggtctccatctcacagGTGCTATTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTCGCAGATGTAGGTGGGATGGAAGAGACTCGGATGCGGCTTCCACACTACTTTCAAAGgtatttctttacctggtttgcacccctctacctcattccacctcccaaga #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCAC-CTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGggtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCA-CCTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGggtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACCTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCAC-CTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTC-TCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCAC-CTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA--CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACC---TTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCT-CTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA--CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACC---TTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCT-GCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACC-TTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat #### Gif_ID3279_3 --> 2 - 1 Original Alignment acCTGACAAGTGGGCAGCTTGCCCTCACCGTT-ATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagacTTGACAAGTGGGCAGCTGGCTCTCACTGTTCATGGCTCTCACATCCTCTTGCAGAGACCCTGGTA-TAAGGTTTCTACTCTG---AAGAAAATGGAGAACTGGTCACCTTCAagtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from CESAR acCTGACAAGTGGGCAGCTTGCCCTCACCGTT-ATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagacTTGACAAGTGGGCAGCTGGCTCTCACTGTTCATGGCTCTCACATCCTCTTGCAGAGACCCTGGT-ATAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAagtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Spaln_aa2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTCATGGCTCTCACATCCTCTTGCAGAGACCCTGGTATAAGGTTTCTACTCTGAAGAAA---ATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Spaln_nt2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTT-ATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTCATGGCTCTCACATCCTCTTGCAGAGACCCTGGTA-TAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Pairagon ACCTGACAAGTGGGCAGCTTGCCCTCACCGTT-ATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTCATGGCTCTCACATCCTCTTGCAGAGACCCTGGTA-TAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Exonerate_protein2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTCATGGCTCTCACATCCTCTTGCAGAGACCCTGGTATAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Exonerate_coding2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTCATGGCTCTCACATCCTCTTGCAGAGACCCTGGTATAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from GeneWise ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTCATGGCTCTCACATCCTCTTGCAGAGACCCTGGTATAAGGTTTCTACTCTG---AAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagtTATCACTCAGAAACTAATCTTCGTCCGTTACATGAAGAGACTGGAGAACCAAGACA-CTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from CESAR cTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagtTATCACTCAGAAACTAATCTTCGTCCGTTACATGAAGAGACTGGAGAACCAAGAC-ACTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTcGTCCGTTACATGAAGAGACTGGAGAACCAAGACAC-TCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTCGTCCGTTACATGAAGAGACTGGAGAACCAAGACA-CTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Pairagon CTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTCGTCCGTTACATGAAGAGACTGGAGAACCAAGACA-CTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTCGTCCGTTACATGAAGAGACTGGAGAACCAAGACACTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTCGTCCGTTACATGAAGAGACTGGAGAACCAAGACACTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTCGTCCGTTACATGAAGAGACTGGAGAACCAAGACACTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAAGGCCAGAGTCAGAAACCT-GTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTCGTGTCTGCCCCCCTTTCTCTAGAGCAGGCAC-ATTACCAGCAATCCTTCCCTCAaggtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from CESAR GAATATTTAGAAGGCCAGAGTCAGAAACCT-GTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTCGTGTCTGCCCCCCTTTCTCTAGAGCAGGCA-CATTACCAGCAATCCTTCCCTCAaggtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Spaln_aa2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCT-GTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTcGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACA-TTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Spaln_nt2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCT-GTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTCGTGTCTGCCCCCCTTTCTCTAGAGCAGGCAC-ATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Pairagon GAATATTTAGAAGGCCAGAGTCAGAAACCT-GTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTCGTGTCTGCCCCCCTTTCTCTAGAGCAGGCAC-ATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTCGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Exonerate_coding2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTCGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTCGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAG-CTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcaggCTGACTGGCTGGGTGTTACTAAAGCCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACA-GGGTCAATTAGAGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAG-CTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcaggCTGACTGGCTGGGTGTTACTAAAGCCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACA-GGGTCAATTAGAGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAG-CTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGcCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAG-GGTCAATTAGAGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACT-AAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACA-GGGTCAATTAGAGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAG-CTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCAC-AGGGTCAATTAGAGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAG-CTCTTCAACAGCTTCTTCTGGAACATTCAGATTCAC--AAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAG---GGTCAATTAGAGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAG-CTCTTCAACAGCTTCTTCTGGAACATTCAGATTCAC--AAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAG---GGTCAATTAGAGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgatttatggcaatatctatcccagtcttgatgcactgtctccatcgcagGCTGACTGGCTGGGTGTTACTAAAGCCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAGGGTCAATTAGAGATGGTCAAGGCTGCCACTGAGgtgaagtttgaatttggactcctgggggaagggtcctgtagtattgttat #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTT-TGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTC---TTTCTGGGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCT-CCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTTC--TGGGAATTGCTGCCCACCACGTGGCTGGTGGGCT-TCTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTTCTG---GGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTT--TCTGGGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTC-CGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTT--TCTGGGAATTGCTGCCCACCACGTGGCTGGTGGGCTTC-TCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTTCTG---GGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT--CTGGGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTC-CGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTTCTGGGA---ATTGCTGCCCACCACGTGGCTGGTGGGCTTCTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTG-GCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCTGCTATAACCTGCGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCT-TGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTG-GCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCTGCTATAACCTGCGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCC-TTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTG-GCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGCTTTATGCCAGCCGGGCCTGCTATAACCTGcGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTT-GATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTG-GCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCTGCTATAACCTGCGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTT-GATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTG-GCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCTGCTATAACCTGCGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTT-GATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGCTTTATGCCAGCCGGGCCTGCTATAACCTGCGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGCTTTATGCCAGCCGGGCCTGCTATAACCTGCGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccgcttacctatgttgcttctcagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGCTTTATGCCAGCCGGGCCTGCTATAACCTGCGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttctatacagattatttctggctgccaaggctgtgcattagcttc #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTG-GTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagtctctggagtgagggcattcaccatgctttttctcttttgcaggCTGGCTGTTCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTACGTGAATGTACTGTGTGCAGTGCTGTCACGCC-GCGTCAACGACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGGGCCCCTTCCACTAGTATCTACTTAGATGCCAAGgtgggcccaccacatggatgtggcattgttgggtctgtggacagagtact Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTG-GTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagtctctggagtgagggcattcaccatgctttttctcttttgcaggCTGGCTGTTCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTACGTGAATGTACTGTGTGCAGTGCTGTCACGC-CGCGTCAACGACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGGGCCCCTTCCACTAGTATCTACTTAGATGCCAAGgtgggcccaccacatggatgtggcattgttgggtctgtggacagagtact Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagtctctggagtgagggcattcaccatgctttttctcttttgcagGCTGGCTGTTCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTACGTGAATGTACTGTGTGCAGTGCTGTCACGCCGCGTCAACGACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGGGCCCCTTCCACTAGTATCTACTTAGATGCCAAGgtgggcccaccacatggatgtggcattgttgggtctgtggacagagtact Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTG-GTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagtctctggagtgagggcattcaccatgctttttctcttttgcagGCTGGCTGTTCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTACGTGAATGTACTGTGTGCAGTGCTGTCACGCC-GCGTCAACGACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGGGCCCCTTCCACTAGTATCTACTTAGATGCCAAGgtgggcccaccacatggatgtggcattgttgggtctgtggacagagtact Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTG-GTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagtctctggagtgagggcattcaccatgctttttctcttttgcagGCTGGCTGTTCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTACGTGAATGTACTGTGTGCAGTGCTGTCACGCC-GCGTCAACGACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGGGCCCCTTCCACTAGTATCTACTTAGATGCCAAGgtgggcccaccacatggatgtggcattgttgggtctgtggacagagtact Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagtctctggagtgagggcattcaccatgctttttctcttttgcagGCTGGCTGTTCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTACGTGAATGTACTGTGTGCAGTGCTGTCACGCCGCGTCAACGACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGGGCCCCTTCCACTAGTATCTACTTAGATGCCAAGgtgggcccaccacatggatgtggcattgttgggtctgtggacagagtact Alignment from Exonerate_coding2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagtctctggagtgagggcattcaccatgctttttctcttttgcagGCTGGCTGTTCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTACGTGAATGTACTGTGTGCAGTGCTGTCACGCCGCGTCAACGACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGGGCCCCTTCCACTAGTATCTACTTAGATGCCAAGgtgggcccaccacatggatgtggcattgttgggtctgtggacagagtact Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagtctctggagtgagggcattcaccatgctttttctcttttgcagGCTGGCTGTTCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTACGTGAATGTACTGTGTGCAGTGCTGTCACGCCGCGTCAACGACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGGGCCCCTTCCACTAGTATCTACTTAGATGCCAAGgtgggcccaccacatggatgtggcattgttgggtctgtggacagagtact #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactcttcggtgctgaatgttgtagtgactttctgcctccttccatttagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATCGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTT-GTCTGGGGCAAGAAGTACCTATGGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAAGgtaaggcattaacttagaatgggacaaagtatgctggctcgtttttcact Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactcttcggtgctgaatgttgtagtgactttctgcctccttccatttagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATCGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTT-TGTCTGGGGCAAGAAGTACCTATGGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAAGgtaaggcattaacttagaatgggacaaagtatgctggctcgtttttcact Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactcttcggtgctgaatgttgtagtgactttctgcctccttccatttagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATcGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTG-TCTGGGGCAAGAAGTACCTATGGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAAGgtaaggcattaacttagaatgggacaaagtatgctggctcgtttttcact Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactcttcggtgctgaatgttgtagtgactttctgcctccttccatttagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATCGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTA-CCCTTTGTCTGGGGCAAGAAGTACCTATGGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAAGgtaaggcattaacttagaatgggacaaagtatgctggctcgtttttcact Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactcttcggtgctgaatgttgtagtgactttctgcctccttccatttagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATCGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTT-GTCTGGGGCAAGAAGTACCTATGGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAAGgtaaggcattaacttagaatgggacaaagtatgctggctcgtttttcact Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACC--CTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactcttcggtgctgaatgttgtagtgactttctgcctccttccatttagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATCGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTG---TCTGGGGCAAGAAGTACCTATGGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAAGgtaaggcattaacttagaatgggacaaagtatgctggctcgtttttcact Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATAT-GGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACC--CTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactcttcggtgctgaatgttgtagtgactttctgcctccttccatttagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATCGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTG---TCTGGGGCAAGAAGTACCTATGGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAAGgtaaggcattaacttagaatgggacaaagtatgctggctcgtttttcact Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactcttcggtgctgaatgttgtagtgactttctgcctccttccatttagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATCGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGTCTGGGGCAAGAAGTACCTATGGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAAGgtaaggcattaacttagaatgggacaaagtatgctggctcgtttttcact #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTGGGACTTCCTGGA-TCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGACTCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAG-CAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGA-TCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGACTCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAA-GCAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGACTCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGCAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGA-TCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGACTCGGCAAAGACCCAGTGGGCACTGAAATACGC-AAAAGCAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGA-TCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGACTCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAG-CAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGACTCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGCAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGACTCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGCAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaatgatgttgctaaaaccctgttctctcttcctccagGTGATTCTGATGGTGGGACTCCCTGGACTCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGCAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaaactgttggattgggaaagtgtgattagtggaattgctagaggtcgt #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagtgGGTGGGCAGCGCCGAGGCTATCGACAACCAGGCCTATGGGCAGCAGTACTGGG-GCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagtgGGTGGGCAGCGCCGAGGCTATCGACAACCAGGCCTATGGGCAGCAGTACT-GGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTAC-GACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATcGACAACCAGGCCTATGGGCAGCAGTACTGGGG-CAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTA-CGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATCGACAACCAGGCCTATGGGCAGCAGTACT-GGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTA-CGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATCGACAACCAGGCCTATGGGCAGCAGTACT-GGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATCGACAACCAGGCCTATGGGCAGCAGTACTGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATCGACAACCAGGCCTATGGGCAGCAGTACTGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATCGACAACCAGGCCTATGGGCAGCAGTACTGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGGCCACACCTGC-CCAGCATCTACAGGACCAAGCCCAAAAACTTATGaagtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGGCCACACCTGC-CCAGCATCTACAGGACCAAGCCCAAAAACTTATGaagtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCC-AGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGGCCACACCTG-CCCAGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCC--CAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCAG---CATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAG-GCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cccatcccctgggtccccctatctcaatatatcattactttgctttacagAGCCCTGGCACCCCACTCACCCAAATTTTATGCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGCGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCCGACC-ACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtgagctctcaggactaatgtgggccaattttggaggagatttggtgctg Alignment from CESAR AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAG-GCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cccatcccctgggtccccctatctcaatatatcattactttgctttacagAGCCCTGGCACCCCACTCACCCAAATTTTATGCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGCGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCCGAC-CACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtgagctctcaggactaatgtgggccaattttggaggagatttggtgctg Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAG-GCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cccatcccctgggtccccctatctcaatatatcattactttgctttacagAGCCCTGGCACCCCACTCACCCAAATTTTATGCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGcGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCCGACCA----CACCAGAACAACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtgagctctcaggactaatgtgggccaattttggaggagatttggtgctg Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAG-GCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cccatcccctgggtccccctatctcaatatatcattactttgctttacagAGCCCTGGCACCCCACTCACCCAAATTTTATGCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGCGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCCGACC-ACACCAGAACA---ACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtgagctctcaggactaatgtgggccaattttggaggagatttggtgctg Alignment from Pairagon AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAG-GCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cccatcccctgggtccccctatctcaatatatcattactttgctttacagAGCCCTGGCACCCCACTCACCCAAATTTTATGCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGCGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCCGACC-ACACCAGAACA---ACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtgagctctcaggactaatgtgggccaattttggaggagatttggtgctg Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cccatcccctgggtccccctatctcaatatatcattactttgctttacagAGCCCTGGCACCCCACTCACCCAAATTTTATGCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGCGCTGGAAGTGC---CCTACGATCCCAGCCCTTTGTGGCCGACCACACCAGAACAACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtgagctctcaggactaatgtgggccaattttggaggagatttggtgctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG cccatcccctgggtccccctatctcaatatatcattactttgctttacagAGCCCTGGCACCCCACTCACCCAAATTTTATGCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGCGCTGGAAGTGC---CCTACGATCCCAGCCCTTTGTGGCCGACCACACCAGAACAACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtgagctctcaggactaatgtgggccaattttggaggagatttggtgctg #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAA-AACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAACAACATACCAGTGCCACAGGCAAGGAGCCAGAGCACCTCGG-GCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from CESAR AGGAGACCCAAGAGCAGCCAA-AACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAACAACATACCAGTGCCACAGGCAAGGAGCCAGAGCACCTCG-GGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAACAACATACCAGTGCCACAGGCAAGGAGCCAGAGCACCTCGGGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAA-AACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAACAACATACCAGTGCCACAGGCAAGGAGCCAGAGCACCTC-GGGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Pairagon AGGAGACCCAAGAGCAGCCAA-AACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAACAACATACCAGTGCCACAGGCAAGGAGCCAGAGCACCTCGG-GCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAACAACATACCAGTGCCACAGGCAAGGAGCCAGAGCACCTCGGGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from Exonerate_coding2genome AGGAGACCCAAGAGCAGCCAAAA---CATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGAC ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAA--CAACATACCAGTGCCACAGGCAAGGAGCCAGAGCACCTCGGGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ctgccattctattatgcacctcatggaatctgtatctcttcctcttctagAGGCGACCTAAGAGCAGCCAACAACATACCAGTGCCACAGGCAAGGAGCCAGAGCACCTCGGGCCTGCCAGGGGTTGTAGGGAGACAgtgggtgctaggccctgttgacagaatagggtgtcaccatctgccttccc #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCC-CCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagcCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCCAGCTATGACAGAGGAGGAGGGGGAGGAAG-AGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCC-CCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagcCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCCAGCTATGACAGAGGAGGAGGGGGAGGAAG-AGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCCAGCTATGACAGAGGAGGAGGGGGAGGAAGAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTC-CCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCC---------TTCTCCTAGTGCATGATCTACAGCCCTCACCCAGCTATGACAGAGGAGGAGGGGGAGGAAGA-GATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTC-CCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCC---------TTCTCCTAGTGCATGATCTACAGCCCTCACCCAGCTATGACAGAGGAGGAGGGGGAGGAAGA-GATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCCAGCTATGACAGAGGAGGAGGGGGAGGAAGAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCCAGCTATGACAGAGGAGGAGGGGGAGGAAGAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAG-AAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGCAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGG-GCTCAACATGACGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAG-AAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGCAAAGCAAAGGAGGTGGCAGCAGCCAGAAAG-GGCTCAACATGACGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAG-AAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGcAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGG-CTCAACATGACGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAG-AAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGCAAAGCAAAGGAGGTGGCAGCAGCCA-GAAAGGGCTCAACATGACGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAG-AAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGCAAAGCAAAGGAGGTGGCAGCAGCCA-GAAAGGGCTCAACATGACGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGCAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGGCTCAACATGACGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGCAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGGCTCAACATGACGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtgatgccgtaaggggggaggactttttgcaaacattgtttagGAGGAGCAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGCAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGGCTCAACATGACGGTGGATGTGCGAgtaagtcgaagaagctatcttcctgctcaacccaacctatgcttgctgtg #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattcgcttcattggaagacaactcatctattttaaaaacaggGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGG-AAAGAAGCGGAAGgtaccggccttgtaaagatatgttctccaggtcgaatttgaactaaagca Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattcgcttcattggaagacaactcatctattttaaaaacaggGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGG-AAAGAAGCGGAAGgtaccggccttgtaaagatatgttctccaggtcgaatttgaactaaagca Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattcgcttcattggaagacaactcatctattttaaaaacagGGAGATGCAGGAGAGAGAGAAAGCCcTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGG-GGAAAGAAGCGGAAGgtaccggccttgtaaagatatgttctccaggtcgaatttgaactaaagca Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCT-GCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattcgcttcattggaagacaactcatctattttaaaaacagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGA-AAGAAGCGGAAGgtaccggccttgtaaagatatgttctccaggtcgaatttgaactaaagca Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCC-TGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattcgcttcattggaagacaactcatctattttaaaaacagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGA-AAGAAGCGGAAGgtaccggccttgtaaagatatgttctccaggtcgaatttgaactaaagca Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattcgcttcattggaagacaactcatctattttaaaaacagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAGAAGCGGAAGgtaccggccttgtaaagatatgttctccaggtcgaatttgaactaaagca Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattcgcttcattggaagacaactcatctattttaaaaacagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAGAAGCGGAAGgtaccggccttgtaaagatatgttctccaggtcgaatttgaactaaagca Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattcgcttcattggaagacaactcatctattttaaaaacagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAGAAGCGGAAGgtaccggccttgtaaagatatgttctccaggtcgaatttgaactaaagca #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGA-TTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactaggtCGGCACAATCTAAGACTTAATTATGGAATATTTACCTTATGGAAGCC-ACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from CESAR gtCGGCGCAACCTAAGA-TTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactaggtCGGCACAATCTAAGACTTAATTATGGAATATTTACCTTATGGAAGC-CACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGA-TTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGAcTTAATTATGGAATATTTACCTTATGGAAGCCA-CGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGA-TTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGACTTAATTATGGAATATTTACCTTATGGAAG-CCACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Pairagon GTCGGCGCAACCTAAGA-TTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGACTTAATTATGGAATATTTACCTTATGGAAG-CCACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGACTTAATTATGGAATATTTACCTTATGGAAGCCACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGACTTAATTATGGAATATTTACCTTATGGAAGCCACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGACTTAATTATGGAATATTTACCTTATGGAAGCCACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAA-CCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa gtttgggcctgtacaagagatgaaggtcctggctctttctcaatttctaggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACC-AAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtaagttaaagtgctaactgggggaatgtggtatggtctatctgttctgg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAA-CCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa gtttgggcctgtacaagagatgaaggtcctggctctttctcaatttctaggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACC-AAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtaagttaaagtgctaactgggggaatgtggtatggtctatctgttctgg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagagatgaaggtcctggctctttctcaatttctagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttaaagtgctaactgggggaatgtggtatggtctatctgttctgg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAA-CCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagagatgaaggtcctggctctttctcaatttctagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACC-AAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttaaagtgctaactgggggaatgtggtatggtctatctgttctgg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAA-CCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagagatgaaggtcctggctctttctcaatttctagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACC-AAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttaaagtgctaactgggggaatgtggtatggtctatctgttctgg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagagatgaaggtcctggctctttctcaatttctagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttaaagtgctaactgggggaatgtggtatggtctatctgttctgg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagagatgaaggtcctggctctttctcaatttctagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttaaagtgctaactgggggaatgtggtatggtctatctgttctgg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagagatgaaggtcctggctctttctcaatttctagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCCTATCAGATCTTGGCCTCCTATCCTACCAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttaaagtgctaactgggggaatgtggtatggtctatctgttctgg #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ctcggtgcccctactctccaacctgttctatttgttaatgcttgccacagGAAAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCTTACCAACGCCGCGGCT-TGGTAGGTTGCTTATTGAGTTCagtaagaatgcgctacctggtcagggtctggtaggatgaggttgggttggt Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ctcggtgcccctactctccaacctgttctatttgttaatgcttgccacagGAAAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCTTACCAACGCCGCGGC-TTGGTAGGTTGCTTATTGAGTTCagtaagaatgcgctacctggtcagggtctggtaggatgaggttgggttggt Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctcggtgcccctactctccaacctgttctatttgttaatgcttgccacagGAAAAAGAGTCCACAGAAGATTACAACATTcGCTTGCATTTTAACTCTACCCCCTTACCAACGCCGCGGCTT-GGTAGGTTGCTTATTGAGTTCAgtaagaatgcgctacctggtcagggtctggtaggatgaggttgggttggt Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctcggtgcccctactctccaacctgttctatttgttaatgcttgccacagGAAAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCTTACCAACGCCGCGGCT-TGGTAGGTTGCTTATTGAGTTCAgtaagaatgcgctacctggtcagggtctggtaggatgaggttgggttggt Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATG-TGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctcggtgcccctactctccaacctgttctatttgttaatgcttgccacagGAAAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCTTACCAACGCCGCGGCT-TGGTAGGTTGCTTATTGAGTTCAgtaagaatgcgctacctggtcagggtctggtaggatgaggttgggttggt Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGC--TATGGCAAGCTGCTTATTGAGTTCA ctcggtgcccctactctccaacctgttctatttgttaatgcttgccacagGAAAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCTTACCAACGCCGCGGCTT---GGTAGGTTGCTTATTGAGTTCAgtaagaatgcgctacctggtcagggtctggtaggatgaggttgggttggt Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGC--TATGGCAAGCTGCTTATTGAGTTCA ctcggtgcccctactctccaacctgttctatttgttaatgcttgccacagGAAAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCTTACCAACGCCGCGGCTT---GGTAGGTTGCTTATTGAGTTCAgtaagaatgcgctacctggtcagggtctggtaggatgaggttgggttggt Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ctcggtgcccctactctccaacctgttctatttgttaatgcttgccacagGAAAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCTTACCAACGCCGCGGCTTGGTAGGTTGCTTATTGAGTTCAgtaagaatgcgctacctggtcagggtctggtaggatgaggttgggttggt #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGC-TCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcagctactaacatcattgttttccttgtgtttcagGATCCTCAGGACAGCCTCAGATGGAATACCAACAGCTCCACGAATGA-AGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCATACCCTCAAGAGCTCACCACCCTACCCATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAACGCCACCTTgtgagtggtgtcttgggtgttggtctatcctcagcacccttactggtgac Alignment from CESAR GATTCTCAGGACAGC-TCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcagctactaacatcattgttttccttgtgtttcagGATCCTCAGGACAGCCTCAGATGGAATACCAACAGCTCCACGAATG-AAGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCATACCCTCAAGAGCTCACCACCCTACCCATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAACGCCACCTTgtgagtggtgtcttgggtgttggtctatcctcagcacccttactggtgac Alignment from Spaln_aa2Genome GGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcagctactaacatcattgttttccttgtgtttcaggatcctcagGACAGCCTCAGATGGAATACCAACAGCTCCACGAATGAA-GGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCATACCCTCAAGAGCTCACCACCCTACCCATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAACGCCACCTTgtgagtggtgtcttgggtgttggtctatcctcagcacccttactggtgac Alignment from Spaln_nt2Genome GATTCTCAGGACAGC-TCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcagctactaacatcattgttttccttgtgtttcagGATCCTCAGGACAGCCTCAGATGGAATACCAACAGCTCCACGAATGA-AGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCATACCCTCAAGAGCTCACCACCCTACCCATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAACGCCACCTTgtgagtggtgtcttgggtgttggtctatcctcagcacccttactggtgac Alignment from Pairagon GATTCTCAGGACAG-CTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcagctactaacatcattgttttccttgtgtttcagGATCCTCAGGACAGCCTCAGATGGAATACCAACAGCTCCACGAATGAA-GGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCATACCCTCAAGAGCTCACCACCCTACCCATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAACGCCACCTTgtgagtggtgtcttgggtgttggtctatcctcagcacccttactggtgac Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcagctactaacatcattgttttccttgtgtttcagGATCCTCAGGACAGCCTCAGATGGAATACCAACAGCTCCACGAATGAAGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCATACCCTCAAGAGCTCACCACCCTACCCATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAACGCCACCTTgtgagtggtgtcttgggtgttggtctatcctcagcacccttactggtgac Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccccagttctcagctactaacatcattgttttccttgtgtttcagGATCCTCAGGACAGCCTCAGATGGAATACCAACAGCTCCACGAATGAAGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCATACCCTCAAGAGCTCACCACCCTACCCATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAACGCCACCTTgtgagtggtgtcttgggtgttggtctatcctcagcacccttactggtgac Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG-------------------------------------------------- gcacaccccagttctcagctactaacatcattgttttccttgtgtttcagGATCCTCAGGACAGCCTCAGATGGAATACCAACAGCTCCACGAATGAAGGCAGCCTAGTATCTGACCAGAGCCATGATGATATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCCGGCATCACCTTAAGCCATGGTATTTCTCCCCATACCCTCAAGAGCTCACCACCCTACCCATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGCCTTAAACGCCACCTTGTGAGTGGTGTCTTGGGTGTTGGTCTATCCTCAGCACCCTTACTGGTGAC #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGG-AAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACT-GCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGG-AAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCA-ACTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGC-GGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCgGGCAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTGCCCAAG-GAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGA-AGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAA-CTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGG-AAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAA-CTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGC-GGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAAC--CTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTG---CCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGC-GGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAAC--CTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTG---CCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCA-TCAAGATAATGAAGATGAGTGGcgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from CESAR GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGC-ATCAAGATAATGAAGATGAGTGGcgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Spaln_aa2Genome GGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcagggggagataattcgagGGCTGCCGCCTGCCCGTCCTTCGGCGCAT-CAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Spaln_nt2Genome GGGGAGATAAT-CGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGC-ATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Pairagon GGGGGAGATAA-TCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcaGGGGGAGATAATTCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCA-TCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Exonerate_coding2genome CGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcagggggagataattCGAGGGCTGCCGCCTGCCCGTCCTTCGGCG-CATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from GeneWise gagactagaggcctaccaatacccaccctttttttctattttatctgcagggggagataattcgagggctgccgcctgcccgtccttcggcgcatcaagataatgaagatgagtggcgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTAC-ACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAA-GGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTAC-ACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAA-GGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTA-CACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGA-ACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTA-CACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCC-AAGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACCACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTAT-ATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagatTTTAATGTTGAATATCCTACAACAGGGTGGGCTGAGAGACCCTCTCATCT-TAAGAATGCTGATGGACTTGGAATCaggtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from CESAR atTTTAATGTAGAGTAT-ATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagatTTTAATGTTGAATATCCTACAACAGGGTGGGCTGAGAGACCCTCTCATC-TTAAGAATGCTGATGGACTTGGAATCaggtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTAAGAATGCTGATGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATA-TCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTT-AAGAATGCTGATGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Pairagon ATTTTAATGTAGAGTAT-ATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTT-AAGAATGCTGATGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTAAGAATGCTGATGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTAAGAATGCTGATGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA tcttgatgattccaatctgaagtcttttcctttcttttcctttctttcagATTTTAATGTTGAATATCCTACAACAGGGTGGGCTGAGAGACCCTCTCATCTTAAGAATGCTGATGGACTTGGAATCAGgtaggtactcatgggccacaggcctgagataagtcaggcatgcaagccac #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCT-GTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattggtgtttgctctgctctcttccag------GTGCAAATTTTGGATTCACACTCTCGTTTTGTTGGAAGACCCTCAGAGTATACTTGGTC-CTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaagtataagtaaaaagtaactaatagcattctatgatccccacataca Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCT-GTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattggtgtttgctctgctctcttccag------GTGCAAATTTTGGATTCACACTCTCGTTTTGTTGGAAGACCCTCAGAGTATACTTGGT-CCTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaagtataagtaaaaagtaactaatagcattctatgatccccacataca Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattggtgtttgctctgctctcttccag------GTGCAAATTTTGGATTCACACTCTCGTTTTGTTGGAAGACCCTCAGAGTATACTTGGTCCTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaagtataagtaaaaagtaactaatagcattctatgatccccacataca Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCT-GTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattggtgtttgctctgctctcttccag------GTGCAAATTTTGGATTCACACTCTCGTTTTGTTGGAAGACCCTCAGAGTATACTTGGTC-CTTAAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTTAGTTTTTCTAAAgtaagtataagtaaaaagtaactaatagcattctatgatccccacataca Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCT-GTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattggtgtttgctctgctctcttccag------GTGCAAATTTTGGATTCACACTCTCGTTTTGTTGGAAGACCCTCAGAGTATACTTGGTC-CTTAAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTTAGTTTTTCTAAAgtaagtataagtaaaaagtaactaatagcattctatgatccccacataca Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattggtgtttgctctgctctcttccagGTGCAAATTTTGGATTCACACTCTCGTTTTGTTGGAAGACCCTCAGAGTATACTTGGTCCTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaagtataagtaaaaagtaactaatagcattctatgatccccacataca Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattggtgtttgctctgctctcttccagGTGCAAATTTTGGATTCACACTCTCGTTTTGTTGGAAGACCCTCAGAGTATACTTGGTCCTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaagtataagtaaaaagtaactaatagcattctatgatccccacataca Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattggtgtttgctctgctctcttccagGTGCAAATTTTGGATTCACACTCTCGTTTTGTTGGAAGACCCTCAGAGTATACTTGGTCCTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtaagtataagtaaaaagtaactaatagcattctatgatccccacataca #### Kif20b_ID7008_13 --> 0 - 2 Original Alignment GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAA-GAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAACGATGTTACACAGGAATTCACACAGTATTGGAGCCAGC-GGAAGCTGATTTTaagtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from CESAR GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAA-GAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAACGATGTTACACAGGAATTCACACAGTATTGGAGCCAGC-GGAAGCTGATTTTaagtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Spaln_aa2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAA-GAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAcGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGAA-GCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Spaln_nt2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAA-GAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAACGATGTTACACAGGAATTCACACAGTATTGGAGCCAGC-GGAAGCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Pairagon GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAA-GAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAACGATGTTACACAGGAATTCACACAGTATTGGAGCCAGC-GGAAGCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Exonerate_protein2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAA-GAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAACGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGAAGCTGATTTTAAGtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Exonerate_coding2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAA-GAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAACGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGAAGCTGATTTTAAGtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from GeneWise GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAA-GAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAAGGAGACACTTCTT- agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAACGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGAAGCTGATTTTAAGTAAGCTAATCCTTTgttctatcctggcaatgatttagacatacttgttc #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCC-ATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatcctttcactgttttagaggtcaatttttgggtttgcttatgttaagCTCTGTGTGATACTAGAACCCCATGCAGGAACTTATGTCCCGCCACAAGA-CTACAGCCTTAGCCCCCGAGATTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtagggccctctactaatcctggtaaaatagttgtggtccaacctccatc Alignment from CESAR CTCTGTGTGATACTAGAGCCC-ATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatcctttcactgttttagaggtcaatttttgggtttgcttatgttaagCTCTGTGTGATACTAGAACCCCATGCAGGAACTTATGTCCCGCCACAAGA-CTACAGCCTTAGCCCCCGAGATTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtagggccctctactaatcctggtaaaatagttgtggtccaacctccatc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatcctttcactgttttagaggtcaatttttgggtttgcttatgttaagCTCTGTGTGATACTAGAACCCCATGCAGGAACTTATGTCCCGCCACAAGACTACAGCCTTAGCCCCCGAGATTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtagggccctctactaatcctggtaaaatagttgtggtccaacctccatc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCC-ATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatcctttcactgttttagaggtcaatttttgggtttgcttatgttaagCTCTGTGTGATACTAGAACCCCATGCAGGAACTTATGTCCCGCCACAAGA-CTACAGCCTTAGCCCCCGAGATTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtagggccctctactaatcctggtaaaatagttgtggtccaacctccatc Alignment from Pairagon CTCTGTGTGATACTAGAG-CCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatcctttcactgttttagaggtcaatttttgggtttgcttatgttaagCTCTGTGTGATACTAGAACCCCATGCAGGAACTTATGTCCCGCCACAAGA-CTACAGCCTTAGCCCCCGAGATTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtagggccctctactaatcctggtaaaatagttgtggtccaacctccatc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatcctttcactgttttagaggtcaatttttgggtttgcttatgttaagCTCTGTGTGATACTAGAACCCCATGCAGGAACTTATGTCCCGCCACAAGACTACAGCCTTAGCCCCCGAGATTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtagggccctctactaatcctggtaaaatagttgtggtccaacctccatc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatcctttcactgttttagaggtcaatttttgggtttgcttatgttaagCTCTGTGTGATACTAGAACCCCATGCAGGAACTTATGTCCCGCCACAAGACTACAGCCTTAGCCCCCGAGATTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtagggccctctactaatcctggtaaaatagttgtggtccaacctccatc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatcctttcactgttttagaggtcaatttttgggtttgcttatgttaagCTCTGTGTGATACTAGAACCCCATGCAGGAACTTATGTCCCGCCACAAGACTACAGCCTTAGCCCCCGAGATTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtagggccctctactaatcctggtaaaatagttgtggtccaacctccatc #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCC-AAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCCAAAAACATTACTCGATGTGGGTTGTCAAATACAG-TCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCC-AAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCCAAAAACATTACTCGATGTGGGTTGTCAAATA-CAGTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCC-AAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCcAAAAACATTACTCGATGTGGGTTGTCAAATAC-AGTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTC-CAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCCAAAAACATTACTCGATGTGGGTTGT-CAAATACAGTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGT-CCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCCAAAAACATTACTCGATGTGGGTTGTCAAA-TACAGTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCCAAAAACATTACTCGATGTGGGTTGTCAAATACAGTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCCAAAAACATTACTCGATGTGGGTTGTCAAATACAGTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCCAAAAACATTACTCGATGTGGGTTGTCAAATACAGTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTC-AAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATT-CAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTAT-TCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTAT-TCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATC--CCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCA---AGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAG-ACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATC--CCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCA---AGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATA-AAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGCACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCA-AGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTG-TTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaaggtTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGG-ACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTG-TTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaaggtTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAAT-TGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTG-TTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGcTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGA-CACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTG-TTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATT-GGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTG-TTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATT-GGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGCTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTT-TAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGT-TTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTG-TTTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTT-TAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGC--TGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTT---AGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGC--TGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTT---AGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggtgaaagctcatggtatcatcatgaggcatgatgcttgtgcaaatgtagCCAGTGAGTGAAGAGCGATCCCGTGCAACAGAGCCATCCCACTACCATTACCTCACCTT-TCGGCCTTTCCTAggtaagttggtgggaggggatgagcaaatcatacaggcaggggtgagccta Alignment from CESAR CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggtgaaagctcatggtatcatcatgaggcatgatgcttgtgcaaatgtagCCAGTGAGTGAAGAGCGATCCCGTGCAACAGAGCCATCCCACTACCATTACCTCACCT-TTCGGCCTTTCCTAggtaagttggtgggaggggatgagcaaatcatacaggcaggggtgagccta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggtgaaagctcatggtatcatcatgaggcatgatgcttgtgcaaatgtagCCAGTGAGTGAAGAGCGATCCcGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTT-CGGCCTTTCCTAGgtaagttggtgggaggggatgagcaaatcatacaggcaggggtgagccta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggtgaaagctcatggtatcatcatgaggcatgatgcttgtgcaaatgtagCCAGTGAGTGAAGAGCGATCCCGTGCAACAGAGCCATCCCACTACCATTACCTCA-CCTTTCGGCCTTTCCTAGgtaagttggtgggaggggatgagcaaatcatacaggcaggggtgagccta Alignment from Pairagon CCAGTGAGTGAGGAGCGAT-CGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggtgaaagctcatggtatcatcatgaggcatgatgcttgtgcaaatgtagCCAGTGAGTGAAGAGCGATCCCGTGCAACAGAGCCATCCCACTACCATTACCTCA-CCTTTCGGCCTTTCCTAGgtaagttggtgggaggggatgagcaaatcatacaggcaggggtgagccta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCC--CCCCGGCCTTACCCAG ggtgaaagctcatggtatcatcatgaggcatgatgcttgtgcaaatgtagCCAGTGAGTGAAGAGCGATCCCGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTT---CGGCCTTTCCTAGgtaagttggtgggaggggatgagcaaatcatacaggcaggggtgagccta Alignment from Exonerate_coding2genome ggtgaaagctcatggtatcatcatgaggcatgatgcttgtgcaaatgtagccagtgagtgaagagcgatcccgtgcaacagagccatcccactaccattacctcacctttcggcctttcctaggtaagttggtgggaggggatgagcaaatcatacaggcaggggtgagccta Alignment from GeneWise ggtgaaagctcatggtatcatcatgaggcatgatgcttgtgcaaatgtagccagtgagtgaagagcgatcccgtgcaacagagccatcccactaccattacctcacctttcggcctttcctaggtaagttggtgggaggggatgagcaaatcatacaggcaggggtgagccta #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCC-TGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatataactgacccattccacccatatctttcatctgcttgagaacacagatGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTG-TGGCTCTTATAATTGTCATTGCAACCGAGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGggtaagtatacttggctagcccacacctgggtgtgggtcgtttctgttctt Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCC-TGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatataactgacccattccacccatatctttcatctgcttgagaacacagatGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACT-GTGGCTCTTATAATTGTCATTGCAACCGAGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGggtaagtatacttggctagcccacacctgggtgtgggtcgtttctgttctt Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatataactgacccattccacccatatctttcatctgcttgagaacacagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGTGGCTCTTATAATTGTCATTGCAACCGAGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgtaagtatacttggctagcccacacctgggtgtgggtcgtttctgttctt Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCC-TGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatataactgacccattccacccatatctttcatctgcttgagaacacagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACT-GTGGCTCTTATAATTGTCATTGCAACCGAGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgtaagtatacttggctagcccacacctgggtgtgggtcgtttctgttctt Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatataactgacccattccacccatatctttcatctgcttgagaacacagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACT-GTGGCTCTTATAATTGTCATTGCAACCGAGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgtaagtatacttggctagcccacacctgggtgtgggtcgtttctgttctt Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatataactgacccattccacccatatctttcatctgcttgagaacacagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGTGGCTCTTATAATTGTCATTGCAACCGAGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgtaagtatacttggctagcccacacctgggtgtgggtcgtttctgttctt Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatataactgacccattccacccatatctttcatctgcttgagaacacagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGTGGCTCTTATAATTGTCATTGCAACCGAGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgtaagtatacttggctagcccacacctgggtgtgggtcgtttctgttctt Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatataactgacccattccacccatatctttcatctgcttgagaacacagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGTGGCTCTTATAATTGTCATTGCAACCGAGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGTGTGGgtaagtatacttggctagcccacacctgggtgtgggtcgtttctgttctt #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggtcgtttctgttcttgacccctccctatcaacgttctctttatggtagacCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCTCGGCCACTACACATGCAACTGTTATCCTGGCTACAGGCTCA-GGCCTCCAGACCACCCATCTGGGAAggtaagctgtcatcctattgtaggcagataattctcctccctggacttagg Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggtcgtttctgttcttgacccctccctatcaacgttctctttatggtagacCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCTCGGCCACTACACATGCAACTGTTATCCTGGCTACAGGCTCA-GGCCTCCAGACCACCCATCTGGGAAggtaagctgtcatcctattgtaggcagataattctcctccctggacttagg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggtcgtttctgttcttgacccctccctatcaacgttctctttatggtagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCTCGGCCACTACACATGCAACTGTTATCCTGGCTACAGGCTCAGGCCTCCAGACCACCCATCTGGGAAGgtaagctgtcatcctattgtaggcagataattctcctccctggacttagg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggtcgtttctgttcttgacccctccctatcaacgttctctttatggtagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCTCGGCCACTACACATGCAACTGTTATCCTGGCTACAGGCTC-AGGCCTCCAGACCACCCATCTGGGAAGgtaagctgtcatcctattgtaggcagataattctcctccctggacttagg Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggtcgtttctgttcttgacccctccctatcaacgttctctttatggtagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCTCGGCCACTACACATGCAACTGTTATCCTGGCTACAGGCTC-AGGCCTCCAGACCACCCATCTGGGAAGgtaagctgtcatcctattgtaggcagataattctcctccctggacttagg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTC--AAGGCCTCCCGACCGCCCATTTGCGAAG gggtcgtttctgttcttgacccctccctatcaacgttctctttatggtagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCTCGGCCACTACACATGCAACTGTTATCCTGGCTACAGGCTCAG---GCCTCCAGACCACCCATCTGGGAAGgtaagctgtcatcctattgtaggcagataattctcctccctggacttagg Alignment from Exonerate_coding2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTC--AAGGCCTCCCGACCGCCCATTTGCGAAG gggtcgtttctgttcttgacccctccctatcaacgttctctttatggtagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCTCGGCCACTACACATGCAACTGTTATCCTGGCTACAGGCTCAG---GCCTCCAGACCACCCATCTGGGAAGgtaagctgtcatcctattgtaggcagataattctcctccctggacttagg Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggtcgtttctgttcttgacccctccctatcaacgttctctttatggtagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCTCGGCCACTACACATGCAACTGTTATCCTGGCTACAGGCTCAG-GCCTCCAGACCACCCATCTGGGAAGgtaagctgtcatcctattgtaggcagataattctcctccctggacttagg #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGC-AGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccagatttgaatcacaccaccttcatttcttggtatcgcctacagacATTGACGAATGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTCAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAA-CCAGGGGGGTGGGACATGTCGTggtacctcaagtctagtcccccccaaaggggtggcctgtcctggatagggt Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGC-AGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccagatttgaatcacaccaccttcatttcttggtatcgcctacagacATTGACGAATGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTCAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACC-GAACCAGGGGGGTGGGACATGTCGTggtacctcaagtctagtcccccccaaaggggtggcctgtcctggatagggt Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGC-AGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgaatcacaccaccttcatttcttggtatcgcctacagACATTGACGAATGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTcAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAC-CAGGGGGGTGGGACATGTCGTGgtacctcaagtctagtcccccccaaaggggtggcctgtcctggatagggt Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGG-CAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgaatcacaccaccttcatttcttggtatcgcctacagACATTGACGAATGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTCAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCG-AACCAGGGGGGTGGGACATGTCGTGgtacctcaagtctagtcccccccaaaggggtggcctgtcctggatagggt Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGG-CAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgaatcacaccaccttcatttcttggtatcgcctacagACATTGACGAATGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTCAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCG-AACCAGGGGGGTGGGACATGTCGTGgtacctcaagtctagtcccccccaaaggggtggcctgtcctggatagggt Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGC-AGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGG tggcaccagatttgaatcacaccaccttcatttcttggtatcgcctacagACATTGACGAATGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTCAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAACCAGGGGGgtgggacatgtcgtggtacctcaagtctagtcccccccaaaggggtggcctgtcctggatagggt Alignment from Exonerate_coding2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGC-AGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGG tggcaccagatttgaatcacaccaccttcatttcttggtatcgcctacagACATTGACGAATGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTCAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAACCAGGGGGgtgggacatgtcgtggtacctcaagtctagtcccccccaaaggggtggcctgtcctggatagggt Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTAC---CGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgaatcacaccaccttcatttcttggtatcgcctacagACATTGACGAATGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTCAGCTTCAA---GTGCATTGCCTGCCAGCCTGGCTACCGAACCAGGGGGGTGGGACATGTCGTGgtacctcaagtctagtcccccccaaaggggtggcctgtcctggatagggt #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTAC-GAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgcgaacttttatttatttttcctttgcagacATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACG-TGGTAATCTTTTAGAGTGTGTAggtgagctagactatagtgctacccaaggaacagctgaactttttttctgt Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTAC-GAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgcgaacttttatttatttttcctttgcagacATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTAC-GTGGTAATCTTTTAGAGTGTGTAggtgagctagactatagtgctacccaaggaacagctgaacttttttttttt Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGTGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaactttttttctgt Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTA-CGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACG-TGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaactttttttctgt Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTA-CGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACG-TGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaactttttttctgt Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGTGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaactttttttctgt Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGTGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaactttttttctgt Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGTGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaactttttttctgt #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGC-CGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCAT-CCCCCCACGCGGTACTggtatgtatttattgaaggatgatcacatatctattgtactatagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGC-CGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCA-TCCCCCCACGCGGTACTggtatgtatttattgaaggatgaggatttatatttcattttatagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGC-CGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCcCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATC-CCCCCACGCGGTACTGgtatgtatttattgaaggatgatcacatatctattgtactatagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGC-CGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCAT-CCCCCCACGCGGTACTGgtatgtatttattgaaggatgatcacatatctattgtactatagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTG-CCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCAT-CCCCCCACGCGGTACTGgtatgtatttattgaaggatgatcacatatctattgtactatagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGC-CGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCG--TGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATC---CCCCCACGCGGTACTGgtatgtatttattgaaggatgatcacatatctattgtactatagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGC-CGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCG--TGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATC---CCCCCACGCGGTACTGgtatgtatttattgaaggatgatcacatatctattgtactatagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatcacatatctattgtactatagGGTCCC #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggcTACCCTAATGAGGAGGCTCGCAGAGGTAGTGCTGGTTTCACTGCGGGAAT-GCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from CESAR gcTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggcTACCCTAATGAGGAGGCTCGCAGAGGTAGTGCTGGTTTCACTGCGGGAA-TGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTCGCAGAGGTAGTGCTGGTTTCACTGCGGGAATGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTCGCAGAGGTAGTGCTGGTTTCACTGCGGGAAT-GCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Pairagon GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTCGCAGAGGTAGTGCTGGTTTCACTGCGGGAAT-GCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTCGCAGAGGTAGTGCTGGTTTCACTGCGGGAATGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Exonerate_coding2genome tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggctaccctaatgaggaggctcgcagaggtagtgctggtttcactgcgggaatgctggagcaacacaaggacaaggtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from GeneWise TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagGATGCCTCCGCGTACATTACAGGCTACCCTAATGAGGAGGCTCGCAGAGGTAGTGCTGGTTTCACTGCGGGAATGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAG-TTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagatTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGCTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGC-ACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAG-TTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagatTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGCTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATG-CACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGCTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAG-TTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGCTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATG-CACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAG-TTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGCTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATG-CACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGCTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGCTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGCTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGC-GCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGCGCTGCATGTGTGCAATGGTCTCAGGCAGAGC-GCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGggtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACG-CGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTG------CGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGCGCTGCATGTGTGCAATGGTCTCAGGCAGAG-CGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGggtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACG---CGCGCTGCACGTGAGCAGCGGTCC---CAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGCGCTGCATGTGTGCAATGGTCTCAGGCAGAGCGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCG-CGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCA-----GCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGCGCTGCATGTGTGCAATGGTCTCAGGCAGAGCGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGC-GCGCTGCACGTGAGCAGCGGTCCCAGGCGGA-----GCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGCGCTGCATGTGTGCAATGGTCTCAGGCAGAGCGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACG---CGCGCTGCACGTGAGCAGCGGTCC---CAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGCGCTGCATGTGTGCAATGGTCTCAGGCAGAGCGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACG---CGCGCTGCACGTGAGCAGCGGTCC---CAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGCGCTGCATGTGTGCAATGGTCTCAGGCAGAGCGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACG---CGCGCTGCACGTGAGCAGCGGTCC---CAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGCGCTGCATGTGTGCAATGGTCTCAGGCAGAGCGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg #### Map3k11_ID1205_6 --> 2 - 1 Original Alignment atTTCAAACACCGCATCACAGTGCAAGCCTCTCCT-GGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGt agaaagggctgtcagtagtgagcaccagtaattcttccaattcttttcagacTTCAAACATCGAATCACAGTACAGGCAGCTCCTCGGCCTAGATCGGAGGAGAAATGTGTTCAAGGTTGGGG-TGGGGACTCACCAACTTTCCCTAGATTCCAATCCATCCAAtgtgagctgcttaaccagcccccccacacataaggcctaagatggattggc Alignment from CESAR atTTCAAACACCGCATCACAGTGCAAGCCTCTCCT-GGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGt agaaagggctgtcagtagtgagcaccagtaattcttccaattcttttcagacTTCAAACATCGAATCACAGTACAGGCAGCTCCTCGGCCTAGATCGGAGGAGAAATGTGTTCAAGGTTGGGG-TGGGGACTCACCAACTTTCCCTAGATTCCAATCCATCCAAtgtgagctgcttaaccagcccccccacacataaggcctaagatggattggc Alignment from Spaln_aa2Genome ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT agaaagggctgtcagtagtgagcaccagtaattcttccaattcttttcagACTTCAAACATCGAATCACAGTACAGGCAGCTCCTCGGCCTAGATCGGAGGAGAAATGTGTTCAAGGTTGGGGTGGGGACTCACCAACTTTCCCTAGATTCCAATCCATCCAATgtgagctgcttaaccagcccccccacacataaggcctaagatggattggc Alignment from Spaln_nt2Genome ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCT-GGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT agaaagggctgtcagtagtgagcaccagtaattcttccaattcttttcagACTTCAAACATCGAATCACAGTACAGGCAGCTCCTCGGCCTAGATCGGAGGAGAAATGTGTTCAAGGTT-GGGGTGGGGACTCACCAACTTTCCCTAGATTCCAATCCATCCAATgtgagctgcttaaccagcccccccacacataaggcctaagatggattggc Alignment from Pairagon ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCT-GGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT agaaagggctgtcagtagtgagcaccagtaattcttccaattcttttcagACTTCAAACATCGAATCACAGTACAGGCAGCTCCTCGGCCTAGATCGGAGGAGAAATGTGTTCAAGGTTGGGG-TGGGGACTCACCAACTTTCCCTAGATTCCAATCCATCCAATgtgagctgcttaaccagcccccccacacataaggcctaagatggattggc Alignment from Exonerate_protein2genome ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT agaaagggctgtcagtagtgagcaccagtaattcttccaattcttttcagACTTCAAACATCGAATCACAGTACAGGCAGCTCCTCGGCCTAGATCGGAGGAGAAATGTGTTCAAGGTTGGGGTGGGGACTCACCAACTTTCCCTAGATTCCAATCCATCCAATgtgagctgcttaaccagcccccccacacataaggcctaagatggattggc Alignment from Exonerate_coding2genome ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT agaaagggctgtcagtagtgagcaccagtaattcttccaattcttttcagACTTCAAACATCGAATCACAGTACAGGCAGCTCCTCGGCCTAGATCGGAGGAGAAATGTGTTCAAGGTTGGGGTGGGGACTCACCAACTTTCCCTAGATTCCAATCCATCCAATgtgagctgcttaaccagcccccccacacataaggcctaagatggattggc Alignment from GeneWise ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT agaaagggctgtcagtagtgagcaccagtaattcttccaattcttttcagACTTCAAACATCGAATCACAGTACAGGCAGCTCCTCGGCCTAGATCGGAGGAGAAATGTGTTCAAGGTTGGGGTGGGGACTCACCAACTTTCCCTAGATTCCAATCCATCCAATgtgagctgcttaaccagcccccccacacataaggcctaagatggattggc #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atcccagattgctgtaaattaggtctccgaatatattctttcctttccagtgGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTG-GGAGGCCCAAAATGGGaggtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atcccagattgctgtaaattaggtctccgaatatattctttcctttccagtgGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTG-GGAGGCCCAAAATGGGaggtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTcGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGG-GAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCT-GGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCT-GGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAA atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGAGGCCCAAAATgggaggtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGT-GCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAA atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGAGGCCCAAAATgggaggtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTCGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaaggACCCAGAATTTCCACCACTTCCGCAAGCTACGCCCTGACCAAAAACCCAAAGAAGAGGCCCA-AGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaaggACCCAGAATTTCCACCACTTCCGCAAGCTACGCCCTGACCAAAAACCCAAAGAAGAGGCCC-AAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCGCAAGCTAcGCCCTGACCAAAAACCCAAAGAAGAGGCCCAA-GCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCGCAAGCTACGCCCTGACCAAAAACCCAAAGAAGAGGCCCA-AGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCGCAAGCTACGCCCTGACCAAAAACCCAAAGAAGAGGCCCA-AGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCGCAAGCTACGCCCTGACCAAAAACCCAAAGAAGAGGCCCAAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCGCAAGCTACGCCCTGACCAAAAACCCAAAGAAGAGGCCCAAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtttgaatttgggtgggtgaaagtgaccttttgtcttcaagGACCCAGAATTTCCACCACTTCCGCAAGCTACGCCCTGACCAAAAACCCAAAGAAGAGGCCCAAGCAGAGAGGCTTCTGCAAgtttgtaggggagaatagctggagacttgagcttttgaaaaagtgacctg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAG-CATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCCATCTCCCTCCAGCACTTCTTACCCAACTCCTTG-CAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from CESAR CACCCATTCACGACCCAG-CATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCCATCTCCCTCCAGCACTTCTTACCCAACTCCTT-GCAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAG-CATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGcCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGC-AAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGC-ATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCCATCTCCCTCCAGCACTTCTTACCCAACTCCTTG-CAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Pairagon CACCCATTCACGACCCAG-CATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCCATCTCCCTCCAGCACTTCTTACCCAACTCCTTG-CAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGCAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGCAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGCAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCC-GCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacaggcACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACCGCACTGCTACCAACTGCTTGGGCTACCCTAA-GCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgtttttttttccc Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGC-CCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacaggcACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACCGCACTGCTACCAACTGCTTGGGCTACCC-TAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgttcctctgtctc Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACCGCACTGCTACCAACTGCTTGGGCTACCCTAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgtttttttttccc Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCC-CCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACCGCACTGCTACCAACTGCTTGGGCTACCCT-AAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgtttttttttccc Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCC-CCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACCGCACTGCTACCAACTGCTTGGGCTACCCT-AAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgtttttttttccc Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACCGCACTGCTACCAACTGCTTGGGCTACCCTAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgtttttttttccc Alignment from Exonerate_coding2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACCGCACTGCTACCAACTGCTTGGGCTACCCTAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgtttttttttccc Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACCGCACTGCTACCAACTGCTTGGGCTACCCTAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgtttttttttccc #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTT-CCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg attcataactcccggggtagtaacgcaaaggagccctctctcgcccacagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCCTACTATTCCTGTCATGCTGATACTAGGCAAAA-GATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAggtatgttactgcattgttggcactcaaagcatacataggatagatgctca Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTT-CCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg attcataactcccggggtagtaacgcaaaggagccctctctcgcccacagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCCTACTATTCCTGTCATGCTGATACTAGGCAAA-AGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAggtatgttactgcattgttggcactcaaagcatacataggatagatgctca Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG attcataactcccggggtagtaacgcaaaggagccctctctcgcccacagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCCTACTATTCCTGTCATGCTGATACTAGGCAAAAGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatgttactgcattgttggcactcaaagcatacataggatagatgctca Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTT-CCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG attcataactcccggggtagtaacgcaaaggagccctctctcgcccacagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCCTACTATTCCTGTCATGCTGATACTAGGC-AAAAGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatgttactgcattgttggcactcaaagcatacataggatagatgctca Alignment from Pairagon GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTT-CCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG attcataactcccggggtagtaacgcaaaggagccctctctcgcccacagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCCTACTATTCCTGTCATGCTGATACTAGGCAAAA-GATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatgttactgcattgttggcactcaaagcatacataggatagatgctca Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG attcataactcccggggtagtaacgcaaaggagccctctctcgcccacagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCCTACTATTCCTGTCATGCTGATACTAGGCAAAAGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatgttactgcattgttggcactcaaagcatacataggatagatgctca Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG attcataactcccggggtagtaacgcaaaggagccctctctcgcccacagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCCTACTATTCCTGTCATGCTGATACTAGGCAAAAGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatgttactgcattgttggcactcaaagcatacataggatagatgctca Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG attcataactcccggggtagtaacgcaaaggagccctctctcgcccacagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCCTACTATTCCTGTCATGCTGATACTAGGCAAAAGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatgttactgcattgttggcactcaaagcatacataggatagatgctca #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGC-CAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag tctttataacccttcattctttgtgctcacaagattatgtccccttacagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCCAGCACCAGAAATCCATGTCTGCCTCTGTAC-CCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtgtgtctgtggggatagctgtacatctacagcaccatgttgcacacctg Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGC-CAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag tctttataacccttcattctttgtgctcacaagattatgtccccttacagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCCAGCACCAGAAATCCATGTCTGCCTCTGTA-CCCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtgtgtctgtggggatagctgtacatctacagcaccatgttgcacacctg Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttataacccttcattctttgtgctcacaagattatgtccccttacagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCCAGCACCAGAAATCCATGTCTGCCTCTGTACCCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgtgtctgtggggatagctgtacatctacagcaccatgttgcacacctg Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGG-CCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttataacccttcattctttgtgctcacaagattatgtccccttacagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCCAGCACCAGAAATCCATGTCTGCCTCTGTACC-CCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgtgtctgtggggatagctgtacatctacagcaccatgttgcacacctg Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCG-CCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttataacccttcattctttgtgctcacaagattatgtccccttacagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCCAGCACCAGAAATCCATGTCTGCCTCTGTAC-CCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgtgtctgtggggatagctgtacatctacagcaccatgttgcacacctg Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttataacccttcattctttgtgctcacaagattatgtccccttacagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCCAGCACCAGAAATCCATGTCTGCCTCTGTACCCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgtgtctgtggggatagctgtacatctacagcaccatgttgcacacctg Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttataacccttcattctttgtgctcacaagattatgtccccttacagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCCAGCACCAGAAATCCATGTCTGCCTCTGTACCCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgtgtctgtggggatagctgtacatctacagcaccatgttgcacacctg Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttataacccttcattctttgtgctcacaagattatgtccccttacagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCCAGCACCAGAAATCCATGTCTGCCTCTGTACCCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgtgtctgtggggatagctgtacatctacagcaccatgttgcacacctg #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttaggaGAGGTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTC-AGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from CESAR gaGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttaggaGAGGTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTC-AGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATcCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCA-GCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTA-CCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTC-AGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Pairagon GAGAGGTGTTTGATTA-CCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTC-AGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccatgattctcacagtcgtgaactggtgcttttgttttagGAGAGGTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCAGCCAAATTCCGCCAGgtgagagtgtccccaatcttggctctagatctcggatgagaatatggcat #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagtGCACCTGACATTGAGCTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGC-GACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from CESAR tGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagtGCACCTGACATTGAGCTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAG-CGACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCGACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCT-TGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGC-GACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGC-GACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCGACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCGACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCGACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCT-CTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCCTGGGAGCAGCAGCTGGTATCATTCTCCTCA-ATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCT-CTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCCTGGGAGCAGCAGCTGGTATCATTCTCCTC-AATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCCTGGGAGCAGCAGCTGGTATCATTCTCCTCAATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCT-CTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCCTGGGAGCAGCAGCTGGTATCATTCTCCTCA-ATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCT-CTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCCTGGGAGCAGCAGCTGGTATCATTCTCCTCA-ATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCCTGGGAGCAGCAGCTGGTATCATTCTCCTCAATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCCTGGGAGCAGCAGCTGGTATCATTCTCCTCAATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCCTGGGAGCAGCAGCTGGTATCATTCTCCTCAATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTG-GCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTACGCAGATCAAGGGGAGATCAGGGTTGGTTGCACAT-CCAAGCTGAGATCCCAGATCATTTGGCAGAGggtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTG-GCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTACGCAGATCAAGGGGAGATCAGGGTTGGTTGCACA-TCCAAGCTGAGATCCCAGATCATTTGGCAGAGggtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTACGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTG-GCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTACGCAGATCAAGGGGAGATCAGGGTTGGTTGCACA-TCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTG-GCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTACGCAGATCAAGGGGAGATCAGGGTTGGTTGCACA-TCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTACGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATCCAAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from Exonerate_coding2genome gcataatatctgcagcaaaaccaagttggcccactctggacctcccttaggagtgctttttctattcactggtgtttgaccctgtgcagaagacacttctacgcagatcaaggggagatcagggttggttgcacatccaagctgagatcccagatcatttggcagagggtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTG------------GCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataatatctgcagcaaaaccaagttggcccactctggacctcccttagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTACGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATC------------CAAGCTGAGATCCCAGATCATTTGGCAGAGGgtgagtacaaaactgggttgaacttgacattttctgttggcagcatgatc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGG-CAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaataggaagaacctaatggctattttttttcatagtGCTGTGGGCACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATTTCAATTCAGCCAGTCAAGCTTGCACATGAGCGCA------G-TACCAGAGATATTACTCTGgtaagtaccaagtcacggatattttagtatgataagccaagagtggagtg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGG-CAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaataggaagaacctaatggctattttttttcatagtGCTGTGGGCACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATTTCAATTCAGCCAGTCAAGCTTGCACATGAGCGCA-------GTACCAGAGATATTACTCTGgtaagtaccaagtcacggatattttagtatgataagccaagagtggagtg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaataggaagaacctaatggctattttttttcatagTGCTGTGGGCACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATTTCAATTCAGCCAGTCAAGCTTGCACATGAGCGCAGTACCAGAGATATTACTCTGgtaagtaccaagtcacggatattttagtatgataagccaagagtggagtg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTC------AATTCGGC-AGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaataggaagaacctaatggctattttttttcatagTGCTGTGGGCACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATTTCAATTCAGCCAGTCAAGCTTGCACATGAGCGCAG-------TACCAGAGATATTACTCTGgtaagtaccaagtcacggatattttagtatgataagccaagagtggagtg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTC-------GGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaataggaagaacctaatggctattttttttcatagTGCTGTGGGCACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATTTCAATTCAGCCAGTCAAGCTTGCACATGAGCGCAGT-------ACCAGAGATATTACTCTGgtaagtaccaagtcacggatattttagtatgataagccaagagtggagtg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaataggaagaacctaatggctattttttttcatagTGCTGTGGGCACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATTTCAATTCAGCCAGTCAAGCTTGCACATGAGCGCAGTACCAGAGATATTACTCTGgtaagtaccaagtcacggatattttagtatgataagccaagagtggagtg Alignment from Exonerate_coding2genome gctaatgtggcttccaataggaagaacctaatggctattttttttcatagtgctgtgggcacttttgttagagctctagactgcaccagctccatttcaattcagccagtcaagcttgcacatgagcgcagtaccagagatattactctggtaagtaccaagtcacggatattttagtatgataagccaagagtggagtg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaatgtggcttccaataggaagaacctaatggctattttttttcatagTGCTGTGGGCACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATTTCAATTCAGCCAGTCAAGCTTGCACATGAGCGCAGTACCAGAGATATTACTCTGgtaagtaccaagtcacggatattttagtatgataagccaagagtggagtg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACC-CTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATG-GATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACC-CTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGAT-GGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAAC-CCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATG-GATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAAC-CCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATG-GATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC-GTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC-GTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCcATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCG-TATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAG-CATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC-GTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Pairagon CTACCCTGGAAGTCACTTGCAAG-CATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC-GTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGG---TATATTCA gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGTATATTCAGCAGgtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC gactgaaaacacaggccaattgcacactgacttgccttccttggccccagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCgtatattcagcaggtgagtgtcaggtcaactgaagacctgaaccagaggctatcatgagcctc #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATG-GGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATG-GGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATA-TGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATAT-GGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGC-CGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATAC--GGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGG---GGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAG-TGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGCTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGC-TTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg ggctaagcacccaggagattcttctctccttttggcttttatgtggccaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCT-GGCAACTATCATCAAAGATCTGggttggcaggatgactttttcgagcaaggtcagatcttctatttctaagca Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg ggctaagcacccaggagattcttctctccttttggcttttatgtggccaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGC-CCTGGCAACTATCATCAAAGATCTGggttggcaggatgactttttcgagcaaggtcagatcttctatttctcaagg Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttctaagca Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTG-CCCTGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttctaagca Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCA-CTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCC-TGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttctaagca Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttctaagca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --TCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG ggctaagcacccaggagattcttctctccttttggcttttatgtggccagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACCTGAAAATTCACCCTCTTGTGCGGCTGCCCTGGCAACTATCATCAAAGATCTGGgttggcaggatgactttttcgagcaaggtcagatcttctatttctaagca #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAAC-CAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagtgGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGA-ACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAAC-CAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagtgGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGG-TGAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAAC-CAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACcCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAA-CGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAG-AAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTG-AACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAA-CCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTG-AACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCT-CTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttctgtgggcagtaggttctgcattagaaacgactttcctcttgcagATGGCAGGCGCAGGGGTCCCTTTCTCTGTGAATGGGAGGCCTCCTGGCTTCAGGGATTCGTTCAAGTTCACAGCCAGCAG-CAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACAAAGGACACCaggtaagtagggagtccactgtgagaggctggcaacatcaatgtatgtagaa Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCT-CTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttctgtgggcagtaggttctgcattagaaacgactttcctcttgcagATGGCAGGCGCAGGGGTCCCTTTCTCTGTGAATGGGAGGCCTCCTGGCTTCAGGGATTCGTTCAAGTTCACAGCCAGCAG-CAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACAAAGGACACCaggtaagtagggagtccactgtgagaggctggcaacatcaatgtatgtagaa Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCT-CTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctgtgggcagtaggttctgcattagaaacgactttcctcttgcagATGGCAGGCGCAGGGGTCCCTTTCTCTGTGAATGGGAGGCCTcCTGGCTTCAGGGATTCGTTCAAGTTCACAGCCAGCAGC-AAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACAAAGGACACCAGgtaagtagggagtccactgtgagaggctggcaacatcaatgtatgtagaa Alignment from Spaln_nt2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCT-CTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctgtgggcagtaggttctgcattagaaacgactttcctcttgcagATGGCAGGCGCAGGGGTCCCTTTCTCTGTGAATGGGAGGCCTCCTGGCTTCAGGGATTCGTTCAAGTTCACAGCCAGCAG-CAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACAAAGGACACCAGgtaagtagggagtccactgtgagaggctggcaacatcaatgtatgtagaa Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCT-CTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctgtgggcagtaggttctgcattagaaacgactttcctcttgcagATGGCAGGCGCAGGGGTCCCTTTCTCTGTGAATGGGAGGCCTCCTGGCTTCAGGGATTCGTTCAAGTTCACAGCCAGCAG-CAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACAAAGGACACCAGgtaagtagggagtccactgtgagaggctggcaacatcaatgtatgtagaa Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctgtgggcagtaggttctgcattagaaacgactttcctcttgcagATGGCAGGCGCAGGGGTCCCTTTCTCTGTGAATGGGAGGCCTCCTGGCTTCAGGGATTCGTTCAAGTTCACAGCCAGCAGCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACAAAGGACACCAGgtaagtagggagtccactgtgagaggctggcaacatcaatgtatgtagaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAG------CCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctgtgggcagtaggttctgcattagaaacgactttcctcttgcagATGGCAGGCGCAGGGGTCCCTTTCTCTGTGAATGGGAGGCCT------CCTGGCTTCAGGGATTCGTTCAAGTTCACAGCCAGCAGCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACAAAGGACACCAGgtaagtagggagtccactgtgagaggctggcaacatcaatgtatgtagaa #### Myof_ID7468_34 --> 0 - 0 Original Alignment GATGGCTCCAACCTTCCCATCCTCCCCTCT-CAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCA-ACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from CESAR GATGGCTCCAACCTTCCCATCCTCCCCTCT-CAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATC-AACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Spaln_aa2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCT-CAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTcCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAA-CCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Spaln_nt2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAA-AGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCA-ACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Pairagon GATGGCTCCAACCTTCCCATCCTCCCCTCT-CAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCA-ACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Exonerate_protein2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Exonerate_coding2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from GeneWise GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTA-GGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTACGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAA-AGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from CESAR GGCAAAGATGAATTTTTA-GGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTACGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAA-AAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTA-GGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTAcGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAAA-GATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTA-GGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTACGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAA-AGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Pairagon GGCAAAGATGAATTTTTA-GGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTACGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAA-AGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTA-GGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAA--ACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTACGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAAA---GATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTA-GGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAA--ACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTACGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAAA---GATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaggtatctgctggaacaatgggtgccctctatcactgtcgttgcagGGTAAAGATGAATTTTTACGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAAAGATATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGAAACAAGgtgaggtatattcatatttgtacatttcttagtcaagtaaccaggtacac #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa aggtgagactggcaaagtggcagggtttttcctttttctgccccttctagaCTTGGCAACTTCCACATACCATATCCCCGTAAGCAGCAGCACACCACTGCACCTCA-CCTGACCCTGCAGATGaagtaaatacaagtgcattacctgacctgtgaatacaaagtggcaataccaa Alignment from CESAR gCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa aggtgagactggcaaagtggcagggtttttcctttttctgccccttctagaCTTGGCAACTTCCACATACCATATCCCCGTAAGCAGCAGCACACCACTGCACCTCA-CCTGACCCTGCAGATGaagtaaatacaagtgcattacctgacctgtgaatacaaagtggcaataccaa Alignment from Spaln_aa2Genome GCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA aggtgagactggcaaagtggcagggtttttcctttttctgccccttctagACTTGGCAACTTCcACATACCATATCCCCGTAAGCAGCAGCACACCACTGCACCTCAC-CTGACCCTGCAGATGAAgtaaatacaagtgcattacctgacctgtgaatacaaagtggcaataccaa Alignment from Spaln_nt2Genome GCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA aggtgagactggcaaagtggcagggtttttcctttttctgccccttctagACTTGGCAACTTCCACATACCATATCCCCGTAAGCAGCAGCACACCACTGCACCTCACC-TGACCCTGCAGATGAAgtaaatacaagtgcattacctgacctgtgaatacaaagtggcaataccaa Alignment from Pairagon GCTTGGCAACTT-CACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA aggtgagactggcaaagtggcagggtttttcctttttctgccccttctagACTTGGCAACTTCCACATACCATATCCCCGTAAGCAGCAGCACACCACTGCACCTCA-CCTGACCCTGCAGATGAAgtaaatacaagtgcattacctgacctgtgaatacaaagtggcaataccaa Alignment from Exonerate_protein2genome GCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGA aggtgagactggcaaagtggcagggtttttcctttttctgccccttctagACTTGGCAACTTCCACATACCATATCCCCGTAAGCAGCAGCACACCACTGCACCTCACCTGACCCTGCAGATGAAgtaaatacaagtgcattacctgacctgtgaatacaaagtggcaataccaa Alignment from Exonerate_coding2genome GCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGA aggtgagactggcaaagtggcagggtttttcctttttctgccccttctagACTTGGCAACTTCCACATACCATATCCCCGTAAGCAGCAGCACACCACTGCACCTCACCTGACCCTGCAGATGAAgtaaatacaagtgcattacctgacctgtgaatacaaagtggcaataccaa Alignment from GeneWise GCTTGGCAACTTC-ACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA aggtgagactggcaaagtggcagggtttttcctttttctgccccttctagACTTGGCAACTTCCACATACCATATCCCCGTAAGCAGCAGCACACCACTGCACCTCAC-CTGACCCTGCAGATGAAgtaaatacaagtgcattacctgacctgtgaatacaaagtggcaataccaa #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag gcatcctgactctatctagtgctgtgttcctcccctgcctgtccctgcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTCG-GGTAGTCATGGCCTTCaggtgaggcccttcaccagggcgacttctttaaaacgccacacagtgagtca Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag gcatcctgactctatctagtgctgtgttcctcccctgcctgtccctgcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTC-GGGTAGTCATGGCCTTCaggtgaggcccttcaccagggcgacttctttaaaacgccacacagtgagtca Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcctgactctatctagtgctgtgttcctcccctgcctgtccctgcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTcCAGCATTTTCTGCAGGGAACTATCATAGCTCTCGG-GTAGTCATGGCCTTCAGgtgaggcccttcaccagggcgacttctttaaaacgccacacagtgagtca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcctgactctatctagtgctgtgttcctcccctgcctgtccctgcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTCG-GGTAGTCATGGCCTTCAGgtgaggcccttcaccagggcgacttctttaaaacgccacacagtgagtca Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcctgactctatctagtgctgtgttcctcccctgcctgtccctgcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTCG-GGTAGTCATGGCCTTCAGgtgaggcccttcaccagggcgacttctttaaaacgccacacagtgagtca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcctgactctatctagtgctgtgttcctcccctgcctgtccctgcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTCGGGTAGTCATGGCCTTCAGgtgaggcccttcaccagggcgacttctttaaaacgccacacagtgagtca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcctgactctatctagtgctgtgttcctcccctgcctgtccctgcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTCGGGTAGTCATGGCCTTCAGgtgaggcccttcaccagggcgacttctttaaaacgccacacagtgagtca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcctgactctatctagtgctgtgttcctcccctgcctgtccctgcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTCGGGTAGTCATGGCCTTCAGgtgaggcccttcaccagggcgacttctttaaaacgccacacagtgagtca #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGAC-ACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcaggtGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACCACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACT-CCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGAC-ACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcaggtGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACCACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGA-ACTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGAC-ACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACcACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTC-CTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGA-CACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACCACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAAC-TCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGA-CACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACCACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAAC-TCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGAC-ACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACCACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTCCTTGTAGTGAACAAAGtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGAC-ACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACCACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTCCTTGTAGTGAACAAAGtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACCACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTG-AAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTACAAGAGGATCTCACGGATGCGTTTAGTGCACT-CAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from CESAR GTGGACACCACCGAGCAGCTG-AAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTACAAGAGGATCTCACGGATGCGTTTAGTGCAC-TCAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTACAAGAGGATCTCACGGATGCGTTTAGTGCACTCAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTG-AAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTACAAGAGGATCTCACGGATGCGTTTAGTGCACT-CAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Pairagon GTGGACACCACCGAGCAGCTG-AAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTACAAGAGGATCTCACGGATGCGTTTAGTGCACT-CAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTACAAGAGGATCTCACGGATGCGTTTAGTGCACTCAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTACAAGAGGATCTCACGGATGCGTTTAGTGCACTCAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG agaggtcaccttgagtgcttacggaatgccggcctgccttcttctttcagGTTGATACCACTGAACACCTACAAGAGGATCTCACGGATGCGTTTAGTGCACTCAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgagtgtgtgtgtctgaagggttcccagctatgcctgaatcctctctag #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGAT-GAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATCGATGCATTAGTTGTCCATGGCAATGTAAAGGTCA-GGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGAT-GAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATCGATGCATTAGTTGTCCATGGCAATGTAAAGGTC-AGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATCGATGCATTAGTTGTCCATGGCAATGTAAAGGTCAGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGAT-GAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATCGATGCATTAGTTGTCCATGGCAATGTAAAGGTCA-GGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGAT-GAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATCGATGCATTAGTTGTCCATGGCAATGTAAAGGTCA-GGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATCGATGCATTAGTTGTCCATGGCAATGTAAAGGTCAGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATCGATGCATTAGTTGTCCATGGCAATGTAAAGGTCAGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATCGATGCATTAGTTGTCCATGGCAATGTAAAGGTCAGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTG-GCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtaggTATTTCATGCTGGTGGTCCGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAG-CCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from CESAR gTATTTCATGCTGGTGGTG-GCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtaggTATTTCATGCTGGTGGTCCGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAG-CCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTG-GCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCcGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGC-CAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTG-GCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCCGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCC-AGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Pairagon GTATTTCATGCTGGTGGT-GGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCCGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAG-CCAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTG-GCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCA--GCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCCGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGC---CAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGC---CCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTC--CGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGC-CAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct Alignment from GeneWise --------ATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccttggaggtaatcttctctttgcctgtgtagGTATTTCATGCTGGTGGTCCGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGC-CAGATTTCGGAGCGTATCATTGTGCGGgtaagtaccactcctccttatccttaaagctaatgtcctccccatcctct #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAG-GTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagaGTTAATCTTCCACCTGAGCAGCGTTACACAGGTGACTGTGGGG---CTCC-TTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from CESAR gGTCAATCTTCCCCCTGAGCAG-GTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagaGTTAATCTTCCACCTGAGCAGCGTTACACAGGTGACTGTGGGG---CTC-CTTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGCGTTACACAGGTGACTGTGGGGCT---CCTTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAG-GTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGCGTTACACAGGTGACTGTGG---GGCTCC-TTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAG-GTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGCGTTACACAGGTGACTGTGGGGC----TCCTTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGCGTTACACAGGTGACTGTGGG---GCTCCTTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGCGTTACACAGGTGACTGTGGG---GCTCCTTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgctggctgcttgctaggaaatactgctgatctgagtttctctctttcagAGTTAATCTTCCACCTGAGCAGCGTTACACAGGTGACTGTGGG---GCTCCTTTCACTGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtaagtaagttgtttttgccccaagatccctcgcacctacttagctgcac #### Myrf_ID2732_6 --> 1 - 1 Original Alignment aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCC-CCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg aaggttggaccaatatttcctgcaatctagctttgctttcattccaacagaCTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATCAAGCAGGAACCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGCCCCATCACCCTCCATGGCTACCTCAAGGCCCACTTTCACCTGGCA-TGGATCTTTGCCCCTCAGCATTGCTCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTggtatgcgagcaactaacatagactggaccacagtgcaggtttaattcttc Alignment from CESAR aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCC-CCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg aaggttggaccaatatttcctgcaatctagctttgctttcattccaacagaCTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATCAAGCAGGAACCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGCCCCATCACCCTCCATGGCTACCTCAAGGCCCACTTTCACCTGGC-ATGGATCTTTGCCCCTCAGCATTGCTCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTggtatgcgagcaactaacatagactggaccacagtgcaggtttaatgttaa Alignment from Spaln_aa2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG aaggttggaccaatatttcctgcaatctagctttgctttcattccaacagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATCAAGCAGGAACCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGCCCCATCACCCTCCATGGCTACCTCAAGGCCCACTTTCACCTGGCATGGATCTTTGCCCCTCAGCATTGCTCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgcgagcaactaacatagactggaccacagtgcaggtttaattcttc Alignment from Spaln_nt2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATC-CCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG aaggttggaccaatatttcctgcaatctagctttgctttcattccaacagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATCAAGCAGGAACCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGCCCCATCACCCTCCATGGCTACCTCAAGGCCCACTTTCACCTGGCA-TGGATCTTTGCCCCTCAGCATTGCTCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgcgagcaactaacatagactggaccacagtgcaggtttaattcttc Alignment from Pairagon ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATC-CCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCC----------------------------------------------------- aaggttggaccaatatttcctgcaatctagctttgctttcattccaacagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATCAAGCAGGAACCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGCCCCATCACCCTCCATGGCTACCTCAAGGCCCACTTTCACCTGGCA-TGGATCTTTGCCCCTCAGCATTGCTCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGGTATGCGAGCAACTAACATAGACTGGACCACAGTGCAGGTTTAATTCTTC Alignment from Exonerate_protein2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG aaggttggaccaatatttcctgcaatctagctttgctttcattccaacagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATCAAGCAGGAACCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGCCCCATCACCCTCCATGGCTACCTCAAGGCCCACTTTCACCTGGCATGGATCTTTGCCCCTCAGCATTGCTCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgcgagcaactaacatagactggaccacagtgcaggtttaattcttc Alignment from Exonerate_coding2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG aaggttggaccaatatttcctgcaatctagctttgctttcattccaacagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATCAAGCAGGAACCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGCCCCATCACCCTCCATGGCTACCTCAAGGCCCACTTTCACCTGGCATGGATCTTTGCCCCTCAGCATTGCTCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgcgagcaactaacatagactggaccacagtgcaggtttaattcttc Alignment from GeneWise ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG aaggttggaccaatatttcctgcaatctagctttgctttcattccaacagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATCAAGCAGGAACCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGCCCCATCACCCTCCATGGCTACCTCAAGGCCCACTTTCACCTGGCATGGATCTTTGCCCCTCAGCATTGCTCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgcgagcaactaacatagactggaccacagtgcaggtttaattcttc #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagcTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGA-TCTCCAGCTCATGGCCAACaggtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from CESAR cTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagcTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGA-TCTCCAGCTCATGGCCAACaggtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAAcAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATCTC-CAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGAT-CTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Pairagon CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGAT-CTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTG-CTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagagtcttcatctgctgatggattttagtttttattttgttgcctgtagaGAGCTTGCAAAGGAACCACATGTGGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAG-CAAGACCTATGAATATCGGGTGTTGCTCTCTTTCCCGAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtaggttcaagtctaggaatgtcaaggggcgatggtggggcttttgtctt Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTG-CTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagagtcttcatctgctgatggattttagtttttattttgttgcctgtagaGAGCTTGCAAAGGAACCACATGTGGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAG-CAAGACCTATGAATATCGGGTGTTGCTCTCTTTCCCGAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtaggttcaagtctaggaatgtcaaggggcgatggcataagcaatatttc Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagagtcttcatctgctgatggattttagtttttattttgttgcctgtagAGAGCTTGCAAAGGAACCACATGTGGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCAAGACCTATGAATATCGGGTGTTGCTCTCTTTCCCGAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtaggttcaagtctaggaatgtcaaggggcgatggtggggcttttgtctt Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTG-CTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagagtcttcatctgctgatggattttagtttttattttgttgcctgtagAGAGCTTGCAAAGGAACCACATGTGGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCA-AGACCTATGAATATCGGGTGTTGCTCTCTTTCCCGAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtaggttcaagtctaggaatgtcaaggggcgatggtggggcttttgtctt Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTG-CTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagagtcttcatctgctgatggattttagtttttattttgttgcctgtagAGAGCTTGCAAAGGAACCACATGTGGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAG-CAAGACCTATGAATATCGGGTGTTGCTCTCTTTCCCGAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtaggttcaagtctaggaatgtcaaggggcgatggtggggcttttgtctt Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagagtcttcatctgctgatggattttagtttttattttgttgcctgtagAGAGCTTGCAAAGGAACCACATGTGGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCAAGACCTATGAATATCGGGTGTTGCTCTCTTTCCCGAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtaggttcaagtctaggaatgtcaaggggcgatggtggggcttttgtctt Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagagtcttcatctgctgatggattttagtttttattttgttgcctgtagAGAGCTTGCAAAGGAACCACATGTGGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCAAGACCTATGAATATCGGGTGTTGCTCTCTTTCCCGAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtaggttcaagtctaggaatgtcaaggggcgatggtggggcttttgtctt Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- cagagtcttcatctgctgatggattttagtttttattttgttgcctgtagAGAGCTTGCAAAGGAACCACATGTGGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCAAGACCTATGAATATCGGGTGTTGCTCTCTTTCCCGAATGCAGAGCAGGCTAACAGTGTGGAAGTTGGTAGGTTCAAGTCTAGGAATGTCAAGGGGCGATGGTGGGGCTTTTGTCTT #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaAATACTACTCTGCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCT-TTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from CESAR ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaAATACTACTCTGCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCT-TTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Spaln_aa2Genome GGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaaatactactctgcagCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTCT-TCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTT-TCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Pairagon CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTT-TCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGCGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtgagacacagaatcctgaggcagtgctaccatatctcccttctgcagggCCTTTGGTGACAGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAG-GAAGAGCAGCCCTgagtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from CESAR Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtaagacacagaatcctgaggcagtgctaccatatctcccttctgcagggCCTTTGGTGACAGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTA-GGAAGAGCAGCCCTgagtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Spaln_aa2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGAT-------- GGgtgagacacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGcGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGAAGAGCAGCCCTGAGTGAGGGCCAgcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Spaln_nt2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCT-AGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Pairagon GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTA-GGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Exonerate_protein2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Exonerate_coding2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from GeneWise G------------------------------------------------GGGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGGTGAGACACAGAATCCTGAGGCAGTGCTACCATATCTCCCTTCTGCAGGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagtCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTT-CCCAGAGGAGAGGCACTACaggtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagtCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGG-CTTCCCAGAGGAGAGGCACTACaggtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACC-AGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAA-GGGCTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGA-CCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGC-TTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTC-GATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttaggtGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCC---ACATTGATTCCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTCGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAG-TACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGAC-TTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttaggtGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTCGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACA-GTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGAC-TTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACGGTGCTAATGGATtTTCGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGT-ACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACT-TCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCA---CATTGATTCCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTCGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAG-TACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGA-CTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCA---CATTGATTCCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTCGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAG-TACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTCGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTCGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccttgtaaagagccctgacacctttcttttttttttttttagGTGGTGTCACAGGTGGCTGGGACAATCTCCTTGCTGTGACCCCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACGGTGCTAATGGATTTTCGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGTACAGTTATTGTCATGGATCGCCTGgtgagtgaccatgaacccccttgcacttgtcacaggtaggagtgtgtttc #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGG-GGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGCGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAG-CACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGG-GGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGCGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATT-CAGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGCGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGT-GGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGCGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCA-GCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGG-GGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGCGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCA-GCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGT-GGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAAT--TCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGCGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGC---ACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGG---CACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGT--GGGCGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTC-AGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGT-CGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGCGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGC-ACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGTGAAGGC-CCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTG-GAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgattgta Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGC-CCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGT-GGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatctc Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgattgta Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGG-CCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTG-GAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgattgta Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGG-CCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTG-GAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgattgta Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgattgta Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgattgta Alignment from GeneWise --------GCTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAGCGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG GGGGGTTTGCTTCTCCTCCTTATTACCGCCCCTATCTCTGCCCTCTCCAGCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgattgta #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGC-AAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTT-TGTAGGACCCAAGGACATGACTGCTcagtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGC-AAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATT-TTGTAGGACCCAAGGACATGACTGCTcagtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGG-CAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCAT-TTTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGG-CAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCAT-TTTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTG---GGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTT---GTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTA-ACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagaTTCAATAATTTGGGT------CATGTACACCAAGAAAAACATGATGGAGATAATGATAC-GAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTggtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTA-ACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagaTTCAATAATTTGGGT------CATGTACACCAAGAAAAACATGATGGAGATAATGATA-CGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTggtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTA-ACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTAcACCAAGAAAAACATGATGGAGATAATGATACG-AAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTA-ACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTACACCAAGAAAAACATGATGGAGATAATGATAC-GAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTA-ACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGT------CATGTACACCAAGAAAAACATGATGGAGATAATGATAC-GAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGTCATGTACACCAAGAAAAACATGATGGAGATAAT------GATACGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGTCATGTACAC-----CAAGAAAAACATGATGGAGATAATGAT-ACGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gcctcaggaggagagagaccgtccagaactcaggctgctgtctcccttagATTCAATAATTTGGGTCATGTACACCAAGAAAAACATGATGGAGATAATGATACG------AAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagtcaatcaaaggtgtcttgggtggtgctcttaaaaaggctgtaaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGG-CTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTG-TGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCAATCCATGACAGCagtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGG-CTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCCTGCGCTTCTCTGCTTTCCTTCGGGCCAGT-GTGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCAATCCATGACAGCagtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGTGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGG-CTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTG-TGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Pairagon -----------------------------------------------CAGAGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGG-CTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA AGGCTGTAAAGAGCAGCTTAACACTTGCTTATCTTTCTCTTCTTTACCAGAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTG-TGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGTGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGTGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcagcttaacacttgcttatctttctcttctttaccagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGTGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCAATCCATGACAGCAgtgggtctctgcaggagtccaggtacacactgataagagttcagttaaga #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGA-ATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagaaTCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGCATGGACAAGACAGCAGGTTCAGTGCATGGGGGAG-TGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAggtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCC-CGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagaaTCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGCATGGACAAGACAGCAGGTTCAGTGCATGGGGGA-GTGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAggtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGCATGGACAAGACAGCAGGTTCAGTGCATGGGGGAGTGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCC-GAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGCATGGACAAGACAGCAGGTTCAGTGCATGGGGGAG-TGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCC-GAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGCATGGACAAGACAGCAGGTTCAGTGCATGGGGGAG-TGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGCATGGACAAGACAGCAGGTTCAGTGCATGGGGGAGTGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGCATGGACAAGACAGCAGGTTCAGTGCATGGGGGAGTGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGCATGGACAAGACAGCAGGTTCAGTGCATGGGGGAGTGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCC-CAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagacAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTT-TGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAggtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCC-CAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagacAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGT-TTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAggtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTC-CCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTT-TGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTC-CCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTT-TGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCC-CAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT--TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTT---GGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCC-CAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGT--TCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTT---GGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGAC-TACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACCTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGC-TCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGAC-TACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACCTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAG-CTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACCTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGAC-TACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACCTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGC-TCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGA-CTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACCTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGC-TCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACCTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACCTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACCTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAG-GTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGCGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACT-TGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGggtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAG-GTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGCGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGAC-TTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGggtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGT-GCAGACCCCACGCTGCTGGATCGGCACGGAGAC------TCCGCCCTCCACTTGGCT CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGCGTGGGtGCAGACCCCACACTGCTGGAGAGGCATGGAGACTTGCACTCCACTTGGCTCACACCTgtgaaaatttcttgccatcttggacctcccatgagCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAG-GTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTC--CG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGCGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACT-TGCACTCCACTTGGCTCACACCTgtgaaaatttcttgccatcttggacctcccatgagctcagAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAG-GTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGCGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACT-TGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAG-GTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGCGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTTGCACTCCACTTGGctcacacctgtgaaaatttcttgccatcttggacctcccatGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAG-GTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGCGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTTGCACTCCACTTGGctcacacctgtgaaaatttcttgccatcttggacctcccatGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGCGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGA-GCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGACGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCC-AAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGA-GCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGACGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCC-AAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGACGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGA-GCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGACGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCA-AATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGA-GCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGACGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCAAA-TGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGACGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGACGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGACGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCC-CTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGCAAATACACCACCTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTC-CCTCCTTCTAAAGGCTggtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCC-CTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGCAAATACACCACCTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCT-CCCTCCTTCTAAAGGCTggtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCC-CTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGCAAATACACCAcCTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCC-CTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACC-CCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGCAAATACACCACCTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCCC-TCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACC-CCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGCAAATACACCACCTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTC-CCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCC-CTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCT gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGCAAATACACCACCTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCCCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCC-CTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCT gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGCAAATACACCACCTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCCCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGCAAATACACCACCTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCCCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAAT-GAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaaggtGCTGATATCCACACAGAGAATCGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTT-TGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from CESAR gtGCTGACATCCATGCAGAGAAT-GAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaaggtGCTGATATCCACACAGAGAATCGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACT-TTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAAT-GAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATcGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTTGGG-AGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAAT-GAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATCGAAGAACCTCTGTGTCCACTGCCATCCCCCTC-AACTTTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Pairagon GTGCTGACATCCATGCAGAGAAT-GAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATCGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAA-CTTTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATCGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATCGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATCGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACTTTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTG-CTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCCTGCTAAATGCTGCTCAGAATACCACAGAGCCAC-CTTGGCCCCACCCACCCCGGTAggtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from CESAR GTGAAGACTCTG-CTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCCTGCTAAATGCTGCTCAGAATACCACAGAGCCAC-CTTGGCCCCACCCACCCCGGTAggtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Spaln_aa2Genome GTGAAGACTCTG-CTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGcCTGCTAAATGCTGCTCAGAATACCACAGAGCCACCTTG-GCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGC-TGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCCTGCTAAATGCTGCTCAGAATACCACAGAGCCA-CCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Pairagon GTGAAGACTCTG-CTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCCTGCTAAATGCTGCTCAGAATACCACAGAGCCA-CCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCCTGCTAAATGCTGCTCAGAATACCACAGAGCCACCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gagctacatttcccctttaggtctgatgaccggtggattcctgaccccagGTAAAGACCCTGCCTGCTAAATGCTGCTCAGAATACCACAGAGCCACCTTGGCCCCACCCACCCCGGTAGgtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag Alignment from GeneWise gagctacatttcccctttaggtctgatgaccggtggattcctgaccccaggtaaagaccctgcctgctaaatgctgctcagaataccacagagccaccttggccccacccaccccggtaggtcagtctgcagtgacctctggcacctcaatcaagaggtgatacccttag #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTC-TATTCTTTCTGGACCAggtgggatagtccatttggtctccctttcatttaactaaattttctccttt Alignment from CESAR GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTT-CTATTCTTTCTGGACCAggtgggatagtccatttggtctccctttcatttaactaaatttgttttttc Alignment from Spaln_aa2Genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATcCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCT-ATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaattttctccttt Alignment from Spaln_nt2Genome GAGCTAAGTTATC-AAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTC-TATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaattttctccttt Alignment from Pairagon GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGGT------------------------------------------------ ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTC-TATTCTTTCTGGACCAGGTGGGATAGTCCATTTGGTCTCCCTTTCATTTAACTAAATTTTCTCCTTT Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCTATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaattttctccttt Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCTATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaattttctccttt Alignment from GeneWise ---TATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCA ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttaggaacttagttatccaagaaagtctccattgtgttcaaactgcttttctattctttctggaccaggtgggatagTCCATTTGGTCTCCCTTTCATTTAACTAAATTTTCT---CC #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGC-TGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagtgGCTGAAAGTGGAGATATCCAGGCTGAAATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGCCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGC-AGAAGGACCTTTTACCGCCAATAATTACCCTAATaggtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGC-TGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagtgGCTGAAAGTGGAGATATCCAGGCTGAAATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGCCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGC-AGAAGGACCTTTTACCGCCAATAATTACCCTAATaggtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGCCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGG-CTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGCCTGGACATGGATTTATTGCATGTTATGCTCAG-AGGGGCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGG-CTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGCCTGGACATGGATTTATTGCATGTTATGCTCAGAGGG-GCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGC-TGGACATGGATTTACTGCATGCTATACTCAGAAGGT--CCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGCCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCA---GAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGC-TGGACATGGATTTACTGCATGCTATACTCAGAAGGT--CCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGCCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCA---GAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctggtagcccttgaggtgtatccaattctgatcttttccagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGCCTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCAGAAGGACCTTTTACCGCCAATAATTACCCTAATAGgtaatgtggaagccatcagatgatgacaacagctgtgtttggtttaagac #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACC-TCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagatCACCTTTTTCATTGCCGATTCAATGCTCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAAC-GGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAaggtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACC-TCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagatCACCTTTTTCATTGCCGATTCAATGCTCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAA-CGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAaggtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACC-TCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTcTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACG-GTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACAC-CTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAAC-GGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACAC-CTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAAC-GGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctggtctttaatacccactgctttaattgacccactgtgttctctcgtagATCACCTTTTTCATTGCCGATTCAATGCTCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACGGTGCTTATAAGAGGACAGTTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTTTGTACACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCAGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAAAGgtgagtcttaagcaggatgcaggaaaaaagggcacactatattcacaatt #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCT-GACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCTAACTGTATGCCAGCAACTCACAATGCCCT-TGCTCTTGATGCCggtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCT-GACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCTAACTGTATGCCAGCAACTCACAATGCCC-TTGCTCTTGATGCCggtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTTGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCT-GACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCTAACTGTATGCCAGCAACTCACAATGCCCT-TGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCT-GACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCTAACTGTATGCCAGCAACTCACAATGCCCT-TGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCT-GACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCT tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTTGCTCTTGATGCCGgtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from Exonerate_coding2genome tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttaggtggacttagtggcacagggtgacagtatctatgatattattgaccctactcgaccatctaactgtatgccagcaactcacaatgcccttgctcttgatgccggtgagtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCT-GCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTGAT- tctaggtgccgtcattgggtgccctcatagcttctctctgaatcccttagGTGGACTTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCTAACTGTATGCCAGCAACTCACAATGCCCTTGCTCTTGATGCCGGTGAgtgtatcatgcacaaagtttccaatgcatttaacgcatttagaaaa #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCCTACAACTCCAACCACCAGTTTCCTTTCGATTAA-GTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTggtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from CESAR CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCCTACAACTCCAACCACCAGTTTCCTTTCGAT-TAAGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTggtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Spaln_aa2Genome CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATcCTACAACTCCAACCACCAGTTTCCTTTCGATT-AAGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Spaln_nt2Genome CTCAGTGTGGATGATT-TCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCCTACAACTCCAACCACCAGTTTCCTTTCG-ATTAAGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Pairagon CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCCTACAACTCCAACCACCAGTTTCCTTTCGATT-AAGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACC-CGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccaggtTGTGAGCTCTCTGATCACACACCGCTCCTTCACTTTCAAGGTTGCAGAGGAAG-TGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from CESAR gtTGTGAGCTCTCCGGCCACACC-CGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccaggtTGTGAGCTCTCTGATCACACACCGCTCCTTCACTTTCAAGGTTGCAGAGGAA-GTGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACACACCGCTCCTTCACTTTCAAGGTTGCAGAGGAAGTGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACAC-CCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACACACCGCTCCTTCACTTTCAAGGTTGCAGAGGAAG-TGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Pairagon GTTGTGAGCTCTCCGGCCACAC-CCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACACACCGCTCCTTCACTTTCAAGGTTGCAGAGGAAG-TGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACACACCGCTCCTTCACTTTCAAGGTTGCAGAGGAAGTGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACACACCGCTCCTTCACTTTCAAGGTTGCAGAGGAAGTGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACACACCGCTCCTTCACTTTCAAGGTTGCAGAGGAAGTGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCG-TTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCACTTCATCAACCTGCTGTACTACCCGTTCAGTTACC-CTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCG-TTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCACTTCATCAACCTGCTGTACTACCCGTTCAGTTAC-CCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCACTTCATCAACCTGCTGTACTACCCGTTCAGTTACCCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCG-TTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCACTTCATCAACCTGCTGTACTACCCGTTCAGTTACC-CTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCG-TTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCACTTCATCAACCTGCTGTACTACCCGTTCAGTTACC-CTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCACTTCATCAACCTGCTGTACTACCCGTTCAGTTACCCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Exonerate_coding2genome GAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaaGGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCACTTCATCAACCTGCTGTACTACCCGTTCAGTTACCCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCACTTCATCAACCTGCTGTACTACCCGTTCAGTTACCCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaataccagtctaacgagaaaactgaatgttgaccctttgtcattccagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCTCTGCAGCAT---GTTGTATATTCAGGGggtacgaatgctgcttggcagcttcttattcttacgatgactctgtatggt Alignment from CESAR AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaataccagtctaacgagaaaactgaatgttgaccctttgtcattccagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCTCTGCAGCAT---GTTGTATATTCAGGGggtacgaatgctgcttggcagcttcttattcttacgatgactctgtatggt Alignment from Spaln_aa2Genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagtctaacgagaaaactgaatgttgaccctttgtcattccagAAAACTGGAAAAcCTGAAGATTGGCTCCTACACAGGCCCTCTGCAGCAT---GTTGTATATTCAGGGGgtacgaatgctgcttggcagcttcttattcttacgatgactctgtatggt Alignment from Spaln_nt2Genome AAAACTGGAAAAC-TGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagtctaacgagaaaactgaatgttgaccctttgtcattccagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCTCTGCAGCATG---TTGTATATTCAGGGGgtacgaatgctgcttggcagcttcttattcttacgatgactctgtatggt Alignment from Pairagon AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagtctaacgagaaaactgaatgttgaccctttgtcattccagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCTCTGCAGCATG---TTGTATATTCAGGGGgtacgaatgctgcttggcagcttcttattcttacgatgactctgtatggt Alignment from Exonerate_protein2genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagtctaacgagaaaactgaatgttgaccctttgtcattccagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCTCTGCAGCAT---GTTGTATATTCAGGGGgtacgaatgctgcttggcagcttcttattcttacgatgactctgtatggt Alignment from Exonerate_coding2genome AAAACTGGAAAA-CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagtctaacgagaaaactgaatgttgaccctttgtcattccagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCTCTGCAGCAT---GTTGTATATTCAGGGGgtacgaatgctgcttggcagcttcttattcttacgatgactctgtatggt Alignment from GeneWise -------------CTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagtctaacgagaaaactgaatgttgaccctttgtcattccagAAAACTGGAAAACCTGAAGATTGGCTCCTACACAGGCCCTCTGCAGCAT---GTTGTATATTCAGGGGgtacgaatgctgcttggcagcttcttattcttacgatgactctgtatggt #### Nt5c2_ID10041_12 --> 0 - 0 Original Alignment CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTG-GATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG---CGATGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGC-GCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from CESAR CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG--CGATGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTG-CGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Spaln_aa2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGC--GATGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCG-CGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Spaln_nt2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG--CGATGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGC-GCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Pairagon CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG--CGATGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGC-GCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Exonerate_protein2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGCGATGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCG---CGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Exonerate_coding2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG--CGATGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCG-CGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from GeneWise CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGCGATGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCG---CGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATA-CATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagtTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCCTTCAGGAGACACAGGAGGAAC-AGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATA-CATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagtTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCCTTCAGGAGACACAGGAGGAA-CAGACTTG---GTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCCTTCAGGAGACACAGGAGGAACAGACTTGGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGT---AATAC-ATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCCTTCAGGAGACACAGGAGGAAC--AGACT--TGGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATA----CATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGA---GGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCCTTCAGGAGACACAGGAGGAAC-------AGACTTGGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCCTTCAGGAGACACAGGAGGAACAGACTTGGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCCTTCAGGAGACACAGGAGGAACAGACTTGGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATA------CATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAG---GTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACCACACTGCCCTTCAGGAGACACAGGA---------GGAACAGACTTGGTACCCAAGGAGCATGTTTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATAGTCCCA-GTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttgccaaaggacacctggacctgagtgcggaacccaactctgctccacagGACAAGGCAATCTTAGTCCCTCGTTCTTGCCAATGTGGGCCCACTGGATCTAC-GAGCCTGAGGCCCAACCTTGAGGAAgtgagtggtgaactttgaggatagggagacctaagagtggatgcatggcc Alignment from CESAR GAAAAGGCAACCATAGTCCCA-GTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttgccaaaggacacctggacctgagtgcggaacccaactctgctccacagGACAAGGCAATCTTAGTCCCTCGTTCTTGCCAATGTGGGCCCACTGGATCTA-CGAGCCTGAGGCCCAACCTTGAGGAAgtgagtggtgaactttgaggatagggagacctaagagtggatgcatggcc Alignment from Spaln_aa2Genome GAAAAGGCAACCATAGTCCCA-GTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttgccaaaggacacctggacctgagtgcggaacccaactctgctccacagGACAAGGCAATCTTAGTCCCTcGTTCTTGCCAATGTGGGCCCACTGGATCTACG-AGCCTGAGGCCCAACCTTGAGGAAgtgagtggtgaactttgaggatagggagacctaagagtggatgcatggcc Alignment from Spaln_nt2Genome GAAAAGGCAACCATAGTCCCA-GTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttgccaaaggacacctggacctgagtgcggaacccaactctgctccacagGACAAGGCAATCTTAGTCCCTCGTTCTTGCCAATGTGGGCCCACTGGATCTAC-GAGCCTGAGGCCCAACCTTGAGGAAgtgagtggtgaactttgaggatagggagacctaagagtggatgcatggcc Alignment from Pairagon GAAAAGGCAACCATAGTCCC-AGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttgccaaaggacacctggacctgagtgcggaacccaactctgctccacagGACAAGGCAATCTTAGTCCCTCGTTCTTGCCAATGTGGGCCCACTGGATCTAC-GAGCCTGAGGCCCAACCTTGAGGAAgtgagtggtgaactttgaggatagggagacctaagagtggatgcatggcc Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttgccaaaggacacctggacctgagtgcggaacccaactctgctccacagGACAAGGCAATCTTAGTCCCTCGTTCTTGCCAATGTGGGCCCACTGGATCTACGAGCCTGAGGCCCAACCTTGAGGAAgtgagtggtgaactttgaggatagggagacctaagagtggatgcatggcc Alignment from Exonerate_coding2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttgccaaaggacacctggacctgagtgcggaacccaactctgctccacagGACAAGGCAATCTTAGTCCCTCGTTCTTGCCAATGTGGGCCCACTGGATCTACGAGCCTGAGGCCCAACCTTGAGGAAgtgagtggtgaactttgaggatagggagacctaagagtggatgcatggcc Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttgccaaaggacacctggacctgagtgcggaacccaactctgctccacagGACAAGGCAATCTTAGTCCCTCGTTCTTGCCAATGTGGGCCCACTGGATCTACGAGCCTGAGGCCCAACCTTGAGGAAgtgagtggtgaactttgaggatagggagacctaagagtggatgcatggcc #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAG-GATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGCGATGCAACTACTGGTTCCACATTAAAAG-TGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAG-GATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGCGATGCAACTACTGGTTCCACAT-TAAAAGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGCGATGCAACTACTGGTTCCACATTAAAAGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAG-GATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGCGATGCAACTACTGGTTCCACATTAAA-AGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAG-GATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGCGATGCAACTACTGGTTCCACATTAAA-AGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGCGATGCAACTACTGGTTCCACATTAAAAGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGCGATGCAACTACTGGTTCCACATTAAAAGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGCGATGCAACTACTGGTTCCACATTAAAAGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAAT-GCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCATTAATCACATCTGCTCCACCCTACACTGTGCAGAACGAAC-AAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from CESAR ATATCTATCATCATCAAT-GCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCATTAATCACATCTGCTCCACCCTACACTGTGCAGAACGAA-CAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Spaln_aa2Genome ATATCTATCATCATCAAT-GCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCATTAATcACATCTGCTCCACCCTACACTGTGCAGAACGAACA-AAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Spaln_nt2Genome ATATCTATCATCATCAATG-CTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCATTAATCACATCTGCTCCACCCTACACTGTGCAGAACGAAC-AAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Pairagon ATATCTATCATCATCAAT-GCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCATTAATCACATCTGCTCCACCCTACACTGTGCAGAACGAAC-AAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCATTAATCACATCTGCTCCACCCTACACTGTGCAGAACGAACAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCATTAATCACATCTGCTCCACCCTACACTGTGCAGAACGAACAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCATTAATCACATCTGCTCCACCCTACACTGTGCAGAACGAACAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAAC-CGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagatTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAG-GAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAAC-CGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagatTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAA-GGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAAC-CGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACcCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGG-AATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCT-AAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAG-GAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAA-CCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAG-GAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaactggactatgcatatctagtggactgaactttgttttcttgtaggTACTATGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATG-TGGTGCTTGTTGCTCATTGAGCATCCCTTACAACCCTCAGAACCCTGTCaggtgagggtatatgttttactctatctggaacctgtacaactcccagccag Alignment from CESAR gTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaactggactatgcatatctagtggactgaactttgttttcttgtaggTACTATGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCAT-GTGGTGCTTGTTGCTCATTGAGCATCCCTTACAACCCTCAGAACCCTGTCaggtgagggtatatgttttactctatctggaacctgtacaactcccagccag Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaactggactatgcatatctagtggactgaactttgttttcttgtagGTACTATGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGTGGTGCTTGTTGCTCATTGAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgagggtatatgttttactctatctggaacctgtacaactcccagccag Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaactggactatgcatatctagtggactgaactttgttttcttgtagGTACTATGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATG-TGGTGCTTGTTGCTCATTGAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgagggtatatgttttactctatctggaacctgtacaactcccagccag Alignment from Pairagon GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaactggactatgcatatctagtggactgaactttgttttcttgtagGTACTATGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATG-TGGTGCTTGTTGCTCATTGAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgagggtatatgttttactctatctggaacctgtacaactcccagccag Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaactggactatgcatatctagtggactgaactttgttttcttgtagGTACTATGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGTGGTGCTTGTTGCTCATTGAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgagggtatatgttttactctatctggaacctgtacaactcccagccag Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaactggactatgcatatctagtggactgaactttgttttcttgtagGTACTATGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGTGGTGCTTGTTGCTCATTGAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgagggtatatgttttactctatctggaacctgtacaactcccagccag Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaactggactatgcatatctagtggactgaactttgttttcttgtagGTACTATGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGTGGTGCTTGTTGCTCATTGAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgagggtatatgttttactctatctggaacctgtacaactcccagccag #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg agactccctggctcctcgagccatttgattctttgctttgtcttttaaagtgGATGGGAAGTCTCGACGACTCTTTACATGCTTTCGCAAGGACATTCA-TGCTGTTCCTGCAAGCAATACGgggcaagtagttccgattaagttgagtctatgacgggagtggctggaaaagg Alignment from CESAR tgGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg agactccctggctcctcgagccatttgattctttgctttgtcttttaaagtgGATGGGAAGTCTCGACGACTCTTTACATGCTTTCGCAAGGACATTCA-TGCTGTTCCTGCAAGCAATACGgggcaagtagttccgattaagttgagtctatgacgggagtggctggaaaagg Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccctggctcctcgagccatttgattctttgctttgtcttttaaagTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTCGCAAGGACATTCATGCTGTTCCTGCAAGCAATACGGGgcaagtagttccgattaagttgagtctatgacgggagtggctggaaaagg Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccctggctcctcgagccatttgattctttgctttgtcttttaaagTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTCGCAAGGACATTCA-TGCTGTTCCTGCAAGCAATACGGGgcaagtagttccgattaagttgagtctatgacgggagtggctggaaaagg Alignment from Pairagon TGGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccctggctcctcgagccatttgattctttgctttgtcttttaaagTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTCGCAAGGACATTCA-TGCTGTTCCTGCAAGCAATACGGGgcaagtagttccgattaagttgagtctatgacgggagtggctggaaaagg Alignment from Exonerate_protein2genome GAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccctggctcctcgagccatttgattctttgCTTTGTCTTTTAAAGTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTCGCAAGGACATTCATGCTGTTCCTGCAAGCAATACGGGgcaagtagttccgattaagttgagtctatgacgggagtggctggaaaagg Alignment from Exonerate_coding2genome GAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccctggctcctcgagccatttgattctttgCTTTGTCTTTTAAAGTGGATGGGAAGTCTCGACGACTCTTTACATGCTTTCGCAAGGACATTCATGCTGTTCCTGCAAGCAATACGGGgcaagtagttccgattaagttgagtctatgacgggagtggctggaaaagg Alignment from GeneWise agactccctggctcctcgagccatttgattctttgctttgtcttttaaagtggatgggaagtctcgacgactctttacatgctttcgcaaggacattcatgctgttcctgcaagcaatacggggcaagtagttccgattaagttgagtctatgacgggagtggctggaaaagg #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTC-AATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCCAATGGAGCTATCACAACACACCAGCTTCCCATCG-TGAAGCCATGCTGACCTGCAGGCATAAGttgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTC-AATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCCAATGGAGCTATCACAACACACCAGCTTCCCATCG-TGAAGCCATGCTGACCTGCAGGCATAAGttgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCCAATGGAGCTATCACAACACACCAGCTTCCCATCGTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGT-CAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCCAATGGAGCTATCACAACACACCAGCTTCCCATCG-TGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGT-CAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCCAATGGAGCTATCACAACACACCAGCTTCCCATCG-TGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCCAATGGAGCTATCACAACACACCAGCTTCCCATCGTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTC-AATGGAGCTACCACAACACACCAGCTG-CCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCCAATGGAGCTATCACAACACACCAGCTTCCCA--TCGTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCCAATGGAGCTATCACAACACACCAGCTTCCCATCGTGAAGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt #### Pcgf6_ID10084_3 --> 2 - 2 Original Alignment ttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGA-TGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag taatgtgaaactggacaaccataaagtagaaatgttttcccttgctttagttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGCAACAGACTGCCCAAAATGCAACATAGTTGTCCACCAGA-TCAGCCTCTTTATAATATAaggtgagtatgtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from CESAR ttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGA-TGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag taatgtgaaactggacaaccataaagtagaaatgttttcccttgctttagttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGCAACAGACTGCCCAAAATGCAACATAGTTGTCCACCAG-ATCAGCCTCTTTATAATATAaggtgagtatgtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Spaln_aa2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatgtgaaactggacaaccataaagtagaaatgttttcccttgctttagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGCAACAGACTGCCCAAAATGCAACATAGTTGTCCACCAGATCAGCCTCTTTATAATATAAGgtgagtatgtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Spaln_nt2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGA-TGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatgtgaaactggacaaccataaagtagaaatgttttcccttgctttagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGCAACAGACTGCCCAAAATGCAACATAGTTGTCCACCAGA-TCAGCCTCTTTATAATATAAGgtgagtatgtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Pairagon TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGA-TGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatgtgaaactggacaaccataaagtagaaatgttttcccttgctttagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGCAACAGACTGCCCAAAATGCAACATAGTTGTCCACCAGA-TCAGCCTCTTTATAATATAAGgtgagtatgtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Exonerate_protein2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatgtgaaactggacaaccataaagtagaaatgttttcccttgctttagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGCAACAGACTGCCCAAAATGCAACATAGTTGTCCACCAGATCAGCCTCTTTATAATATAAGgtgagtatgtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Exonerate_coding2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatgtgaaactggacaaccataaagtagaaatgttttcccttgctttagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGCAACAGACTGCCCAAAATGCAACATAGTTGTCCACCAGATCAGCCTCTTTATAATATAAGgtgagtatgtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from GeneWise TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatgtgaaactggacaaccataaagtagaaatgttttcccttgctttagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGCAACAGACTGCCCAAAATGCAACATAGTTGTCCACCAGATCAGCCTCTTTATAATATAAGgtgagtatgtatggacttgaacattagctgtgtttaatttttcttttatt #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCT-GAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag gcctatgttgttctgttgccccccctcagattttttcccccctttcctagGTAAACTGGGAATGTGTACGAGGATTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTCGAGCGGGGCAGTGTCCAGAATGCCCAGCAGG-AATCTGCAACAAGATTAATTCTTCCTGTGACCGGCCACTAGGATATCCAATCTTTGTGTCACCATTGACCACGTCTTTGCCTGGGACCCATCCCCAATTACAGGCACTGTGGGGTGGTCCTGTTAGCTTGGGTGCCATTGCCCGATGGCTTTTACATAGCTGGGAGcggtaggttctgatggtcccaaaaattgggaagcttaagcccaaacttggga Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCT-GAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag gcctatgttgttctgttgccccccctcagattttttcccccctttcctagGTAAACTGGGAATGTGTACGAGGATTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTCGAGCGGGGCAGTGTCCAGAATGCCCAGCAG-GAATCTGCAACAAGATTAATTCTTCCTGTGACCGGCCACTAGGATATCCAATCTTTGTGTCACCATTGACCACGTCTTTGCCTGGGACCCATCCCCAATTACAGGCACTGTGGGGTGGTCCTGTTAGCTTGGGTGCCATTGCCCGATGGCTTTTACATAGCTGGGAGcggtaggttctgatggtcccaaaaattgggaagcttaagcccaaacttggga Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgttctgttgccccccctcagattttttcccccctttcctagGTAAACTGGGAATGTGTACGAGGATTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTCGAGCGGGGCAGTGTCCAGAATGCCCAGCAGGAATCTGCAACAAGATTAATTCTTCCTGTGACCGGCCACTAGGATATCCAATCTTTGTGTCACCATTGACCACGTCTTTGCCTGGGACCCATCCCCAATTACAGGCACTGTGGGGTGGTCCTGTTAGCTTGGGTGCCATTGCCCGATGGCTTTTACATAGCTGGGAGCGgtaggttctgatggtcccaaaaattgggaagcttaagcccaaacttggga Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCT-GAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgttctgttgccccccctcagattttttcccccctttcctagGTAAACTGGGAATGTGTACGAGGATTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTCGAGCGGGGCAGTGTCCAGAATGCCCAGCAGG-AATCTGCAACAAGATTAATTCTTCCTGTGACCGGCCACTAGGATATCCAATCTTTGTGTCACCATTGACCACGTCTTTGCCTGGGACCCATCCCCAATTACAGGCACTGTGGGGTGGTCCTGTTAGCTTGGGTGCCATTGCCCGATGGCTTTTACATAGCTGGGAGCGgtaggttctgatggtcccaaaaattgggaagcttaagcccaaacttggga Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCT-GAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgttctgttgccccccctcagattttttcccccctttcctagGTAAACTGGGAATGTGTACGAGGATTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTCGAGCGGGGCAGTGTCCAGAATGCCCAGCAGG-AATCTGCAACAAGATTAATTCTTCCTGTGACCGGCCACTAGGATATCCAATCTTTGTGTCACCATTGACCACGTCTTTGCCTGGGACCCATCCCCAATTACAGGCACTGTGGGGTGGTCCTGTTAGCTTGGGTGCCATTGCCCGATGGCTTTTACATAGCTGGGAGCGgtaggttctgatggtcccaaaaattgggaagcttaagcccaaacttggga Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgttctgttgccccccctcagattttttcccccctttcctagGTAAACTGGGAATGTGTACGAGGATTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTCGAGCGGGGCAGTGTCCAGAATGCCCAGCAGGAATCTGCAACAAGATTAATTCTTCCTGTGACCGGCCACTAGGATATCCAATCTTTGTGTCACCATTGACCACGTCTTTGCCTGGGACCCATCCCCAATTACAGGCACTGTGGGGTGGTCCTGTTAGCTTGGGTGCCATTGCCCGATGGCTTTTACATAGCTGGGAGCGgtaggttctgatggtcccaaaaattgggaagcttaagcccaaacttggga Alignment from Exonerate_coding2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgttctgttgccccccctcagattttttcccccctttcctagGTAAACTGGGAATGTGTACGAGGATTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTCGAGCGGGGCAGTGTCCAGAATGCCCAGCAGGAATCTGCAACAAGATTAATTCTTCCTGTGACCGGCCACTAGGATATCCAATCTTTGTGTCACCATTGACCACGTCTTTGCCTGGGACCCATCCCCAATTACAGGCACTGTGGGGTGGTCCTGTTAGCTTGGGTGCCATTGCCCGATGGCTTTTACATAGCTGGGAGCGgtaggttctgatggtcccaaaaattgggaagcttaagcccaaacttggga Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgttctgttgccccccctcagattttttcccccctttcctagGTAAACTGGGAATGTGTACGAGGATTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTCGAGCGGGGCAGTGTCCAGAATGCCCAGCAGGAATCTGCAACAAGATTAATTCTTCCTGTGACCGGCCACTAGGATATCCAATCTTTGTGTCACCATTGACCACGTCTTTGCCTGGGACCCATCCCCAATTACAGGCACTGTGGGGTGGTCCTGTTAGCTTGGGTGCCATTGCCCGATGGCTTTTACATAGCTGGGAGCGgtaggttctgatggtcccaaaaattgggaagcttaagcccaaacttggga #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAG-GAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGCGAACCAGCTGCCCTATACGACACCATTGCAGCCAATG-GGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAG-GAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGCGAACCAGCTGCCCTATACGACACCATTGCAGCCAAT-GGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGCGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAG-GAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGCGAACCAGCTGCCCTATACGACACCATTGCAGCCAATG-GGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Pairagon ----------------------------------------------CCAGGACCATTTCACATCTCCTGATGAGTATGAG-GAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG GAGTGCCTTCCCCTTACCTTGGACCCTGTGATGCTACCCTGTCTCTCCAGGATCATTTCACATCTCCTGACGAGTATGAGCGAACCAGCTGCCCTATACGACACCATTGCAGCCAATG-GGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGCGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGCGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGCGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTG-TGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGCTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGG-TCTGGGAACAGCATCACACAGCATGTCTGCCaggtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTG-TGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGCTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGG-TCTGGGAACAGCATCACACAGCATGTCTGCCaggtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGCTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTG-TGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGCTGCTTTGGCTTGTGTGTGTTGGGTCGCC-GGGTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTG-TGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGCTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGG-TCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGCTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGCTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGCTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCT-GACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCG-GGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCT-GACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATC-GGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCT-GACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCG-GGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTC-TGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCG-GGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTC-AACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagacTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACA-GAGACCCCTCAAGTTCTGGGAGAGGGACTACaagtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTC-AACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagacTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTAC-AGAGACCCCTCAAGTTCTGGGAGAGGGACTACaagtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTC-AACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCcAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACAG-AGACCCCTCAAGTTCTGGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCA-ACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTAC-AGAGACCCCTCAAGTTCTGGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACT-CAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACA-GAGACCCCTCAAGTTCTGGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACAGAGACCCCTCAAGTTCTGGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACAGAGACCCCTCAAGTTCTGGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttccacacttttctgtttgcagACTCAGCTATGTTGTTCCTTCAAGCCCTGCTTTCAGGTCTTTTCTCTACCCCGCTCCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACAGAGACCCCTCAAGTTCTGGGAGAGGGACTACAAgtatgccagcgaggaggagcactgttgtcccagagagaccttacaggaca #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTG-TGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTT-GTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTGTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTG-TGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTG-TGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTGTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTGTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTGTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAAC-ACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggccctagctgttgtctttttgattatagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACCACCTGCCTCATGTACCTCTTGGAACAGATAGATATGC-TGGTTTTGGAGGCACAggtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAAC-ACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggccctagctgttgtctttttgattatagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACCACCTGCCTCATGTACCTCTTGGAACAGATAGATATG-CTGGTTTTGGAGGCACAggtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAAC-ACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACcACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCT-GGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAA-CACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACCACCTGCCTCATGTACCTCTTGGAACAGATAGATATGC-TGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAA-CACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACCACCTGCCTCATGTACCTCTTGGAACAGATAGATATGC-TGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAAC-ACCTGCCTCATGTACCTCCTGGAGCAGATAGACATG--CATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACCACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCT---GGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAAC-ACCTGCCTCATGTACCTCCTGGAGCAGATAGACATG--CATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACCACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCT---GGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggccctagctgttgtctttttgattatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACCACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCTGGTTTTGGAGGCACAGgtgtgatgtgcccagggtggtccttatccaggaaggtcagtcccacacag #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTG-CTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTT-TCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTggtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTG-CTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTT-TTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTggtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTG-CTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGT-TTTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTG-CTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGT-TTTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTG-CTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTC--TCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTT---CTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTG-CTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTC--TCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTT---CTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct #### Pcnxl3_ID1185_8 --> 1 - 1 Original Alignment cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCC-GCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagcAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTCGCCTTACACTTTGCATCTTCCTTGCTGC-CACCCGAGCTGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTggtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from CESAR cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCC-GCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagcAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTCGCCTTACACTTTGCATCTTCCTTGCTG-CCACCCGAGCTGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTggtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Spaln_aa2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTCGCCTTACACTTTGCATCTTCCTTGCTGCCACCCGAGCTGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Spaln_nt2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTC-CGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCT---GAAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTCGCCTTACACTTTGCATCTTCCTTGCTGC-CACCCGAGCTGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Pairagon CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTC-CGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCT---GAAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTCGCCTTACACTTTGCATCTTCCTTGCTGC-CACCCGAGCTGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Exonerate_protein2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTCGCCTTACACTTTGCATCTTCCTTGCTGCCACCCGAGCTGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from Exonerate_coding2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTCGCCTTACACTTTGCATCTTCCTTGCTGCCACCCGAGCTGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga Alignment from GeneWise CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggagggactgggtctcctaatgccacagattgtcttaccttttccagCAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCTCTCGCCTTACACTTTGCATCTTCCTTGCTGCCACCCGAGCTGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCCTATGATGAGAGTGgtaactccttcccgagccgaccacttattatgcctgtttgtggtgactga #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGG-AGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gctccacccaactctgtttgcgacttatttatgttcctgtctcttcttagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCAAGGAGAGCACAGGCTATCTGGCAGACGTCACAATGCAGGCAGCAACCCCACGCCTCCAGCCTCTG-CATGGGCTCACCACCTaggtgagtagctggtcaatgattccagtgcagaaggagggactgggtctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGG-AGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gctccacccaactctgtttgcgacttatttatgttcctgtctcttcttagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCAAGGAGAGCACAGGCTATCTGGCAGACGTCACAATGCAGGCAGCAACCCCACGCCTCCAGCCTCT-GCATGGGCTCACCACCTaggtgagtagctggtcaatgattccagtgcagaaggagggactgggtctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGG-AGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAGCAG gctccacccaactctgtttgcgacttatttatgttcctgtctcttcttagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCAAGGAGAGCACAGGCTATCTGGcAGACGTCACAATGCAGGCAGCAACCCCACGCCTCCAGCCTCTGCATGGGCTCACCACCTAGGTGAgtagctggtcaatgattccagtgcagaaggagggactgggtctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGG-AGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctccacccaactctgtttgcgacttatttatgttcctgtctcttcttagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCAAGGAGAGCACAGGCTATCTGGCAGACGTCACAATGCAGGCAGCAACCCCACGCCTCCAGCCTCTG-CATGGGCTCACCACCTAGgtgagtagctggtcaatgattccagtgcagaaggagggactgggtctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGG-AGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctccacccaactctgtttgcgacttatttatgttcctgtctcttcttagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCAAGGAGAGCACAGGCTATCTGGCAGACGTCACAATGCAGGCAGCAACCCCACGCCTCCAGCCTCTG-CATGGGCTCACCACCTAGgtgagtagctggtcaatgattccagtgcagaaggagggactgggtctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATC-CGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCT--GTCATGGGCTCACCACCTAG gctccacccaactctgtttgcgacttatttatgttcctgtctcttcttagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCAAGGAGAGCACAGGCTATCTGGCAGACGTCACAATGCAGGCAGCAACCCCACGCCTCCAGCCTCTGC---ATGGGCTCACCACCTAGgtgagtagctggtcaatgattccagtgcagaaggagggactgggtctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATC-CGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCT--GTCATGGGCTCACCACCTAG gctccacccaactctgtttgcgacttatttatgttcctgtctcttcttagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCAAGGAGAGCACAGGCTATCTGGCAGACGTCACAATGCAGGCAGCAACCCCACGCCTCCAGCCTCTGC---ATGGGCTCACCACCTAGgtgagtagctggtcaatgattccagtgcagaaggagggactgggtctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATC-CGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAGCAG gctccacccaactctgtttgcgacttatttatgttcctgtctcttcttagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCAAGGAGAGCACAGGCTATCTGGCAGACGTCACAATGCAGGCAGCAACCCCACGCCTCCAGCCTCTGCATGGGCTCACCACCTAGGTGAgtagctggtcaatgattccagtgcagaaggagggactgggtctcct #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGC-AGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa ccatgattggaagaagactggttagaatggaacattccttccacccacagacATCAAGGAGCTGGTACGGGAGCAGAGCCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAA-GCTGAGGCTCAGCTCCAAGGAGAAACTGagtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGC-AGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa ccatgattggaagaagactggttagaatggaacattccttccacccacagacATCAAGGAGCTGGTACGGGAGCAGAGCCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAA-AGCTGAGGCTCAGCTCCAAGGAGAAACTGagtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAG-GGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGaGCCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAAG-CTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGC-AGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAA-GCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGG-CAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAA-GCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAAGCTGAGGCTCAGCTCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTG-AGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttaggGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTCAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTT-TGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTG-AGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttaggGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTCAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTTG-AAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTT------GGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTCAGTTCCTCACCTCC------TGTACACTGCAGTTTCCAGCGTTTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTG-AGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTCAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTT-TGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGG-TGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTT------GGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTCAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGC-------GTTTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTCAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Exonerate_coding2genome aacataactgacaagataggaacataatttttgtgttttgtttcacttagggatcctggtatagagacgacagtgtttcagaaagttcagttcctcacctcctgtacactgcagtttccagcgtttgaaataggatttaaccatgtgtcggtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTT------GGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTCAGTTCCTC------ACCTCCTGTACACTGCAGTTTCCAGCGTTTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGC-GAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTCGAGATCGTGGAAAAACGCAATTCCACCATGG-GGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGC-GAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTCGAGATCGTGGAAAAACGCAATTCCACCATGG-GGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTCGAGATCGTGGAAAAACGCAATTCCACCATGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGG-CGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTCGAGATCGTGGAAAAACGCAATTCCACCAT-GGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGG-CGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTCGAGATCGTGGAAAAACGCAATTCCACCAT-GGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTCGAGATCGTGGAAAAACGCAATTCCACCATGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGC-GAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTCGAGATCGTGGAAAAACGCAATTCCACCATGGGGAGA-AAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtagtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGG-- tcttgcaaacaatactgtgagaagggataagccctattccctctccacagGTCCCACCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTGAACTATCGCCTCCATGCCACATTTGACCAGGGTCGAGATCGTGGAAAAACGCAATTCCACCATGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGGTAgtcaatcccaggctgtgtcagagtcaggccttgctgtgaacttatga #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACA-GTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTATCCGCACACGTGGCTGTGTATTCAGAGCAGGACACAGGGC-GATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACA-GTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTATCCGCACACGTGGCTGTGTATTCAGAGCAGGACACAGGG-CGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTATCCGCACACGTGGCTGTGTATTCAGAGCAGGACACAGGGCGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACA-GTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTATCCGCACACGTGGCTGTGTATTCAGAGCAGGACACA-GGGCGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACA-GTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTATCCGCACACGTGGCTGTGTATTCAGAGCAGGACACAGGGC-GATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTATCCGCACACGTGGCTGTGTATTCAGAGCAGGACACAGGGCGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTATCCGCACACGTGGCTGTGTATTCAGAGCAGGACACAGGGCGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgaccaggatggtctgcttactcttccatacctacagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACGGAACTGGGTATCCGCACACGTGGCTGTGTATTCAGAGCAGGACACAGGGCGATGCACAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAAgtaggtatgccagggtttctgccggcttggtagaatcctggtttatactc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGA-GTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gattaaagagagtgaagaacatcagtagtcatcctggcccttgcttgcagGAAAATGGTGAAGATGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCAGGCTGACTTTGCCCAGGCCTGCCAGGATACTGGACGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTAC-TAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAggtgagttaagaaacataccctgagccaggcaagaaagtacaggcattctg Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGA-GTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gattaaagagagtgaagaacatcagtagtcatcctggcccttgcttgcagGAAAATGGTGAAGATGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCAGGCTGACTTTGCCCAGGCCTGCCAGGATACTGGACGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTA-CTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAggtgagttaagaaacataccctgagccaggcaagaaagtacaggcattctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtagtcatcctggcccttgcttgcagGAAAATGGTGAAGATGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCAGGCTGACTTTGCCCAGGCCTGCCAGGATACTGGACGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtgagttaagaaacataccctgagccaggcaagaaagtacaggcattctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGA-GTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtagtcatcctggcccttgcttgcagGAAAATGGTGAAGATGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCAGGCTGACTTTGCCCAGGCCTGCCAGGATACTGGACGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTAC-TAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtgagttaagaaacataccctgagccaggcaagaaagtacaggcattctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGA-GTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtagtcatcctggcccttgcttgcagGAAAATGGTGAAGATGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCAGGCTGACTTTGCCCAGGCCTGCCAGGATACTGGACGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTAC-TAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtgagttaagaaacataccctgagccaggcaagaaagtacaggcattctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtagtcatcctggcccttgcttgcagGAAAATGGTGAAGATGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCAGGCTGACTTTGCCCAGGCCTGCCAGGATACTGGACGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtgagttaagaaacataccctgagccaggcaagaaagtacaggcattctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtagtcatcctggcccttgcttgcagGAAAATGGTGAAGATGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCAGGCTGACTTTGCCCAGGCCTGCCAGGATACTGGACGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtgagttaagaaacataccctgagccaggcaagaaagtacaggcattctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtagtcatcctggcccttgcttgcagGAAAATGGTGAAGATGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCAGGCTGACTTTGCCCAGGCCTGCCAGGATACTGGACGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtgagttaagaaacataccctgagccaggcaagaaagtacaggcattctg #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAG-AATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGCAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTT-TGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAggtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from CESAR GAGTTGGAAGAG-AATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGCAATTATACCCGAGCCTACTCCGAGGCCTTGGCAG-CTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAggtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAG-AATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGcAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTT-GGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Spaln_nt2Genome GAGTTGGAAGAG-AATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGCAATTATACCCGAGCCTACTCCGAGGCCTTGGCAG-CTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Pairagon GAGTTGGAAGAG-AATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGCAATTATACCCGAGCCTACTCCGAGGCCTTGGCAG-CTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGCAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGCAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGCAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGC-CCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacaggaCATGTTATGGTTAATGGCCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTC-TGTAGATCCTGCAGTTCCTGCAGTCCCTATAggtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from CESAR gaCATGTCATGGTGAATGGC-CCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacaggaCATGTTATGGTTAATGGCCCCTACCACCCCAATCCCAGTCAATGTGACCCCCA-GTCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAggtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCCtACCACCCCAATCCCAGTCAATGTGACCCCCAGTCT-GTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCC-TACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGT-CTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Pairagon GACATGTCATGGTGAATGG-CCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGT-CTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAG-ATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgggatggtttattttctaagacaggtcaagcctttctttttcctttcaggaCCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGCATGCTACTCAGGGGGGCCAACGCTGTGG-CTATACCAACTATGTTGACAATGTTGTCTTTaagtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAG-ATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgggatggtttattttctaagacaggtcaagcctttctttttcctttcaggaCCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGCATGCTACTCAGGGGGGCCAACGCTG-TGGCTATACCAACTATGTTGACAATGTTGTCTTTaagtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGCATGCTACTCAGGGGGGCCAACGCTGTGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAG-ATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGCATGCTACTCAGGGGGGCCAACGCTGT-GGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAG-ATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGCATGCTACTCAGGGGGGCCAACGCTGT-GGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGCATGCTACTCAGGGGGGCCAACGCTGTGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGCATGCTACTCAGGGGGGCCAACGCTGTGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgggatggtttattttctaagacaggtcaagcctttctttttcctttcagGACCACCCCCAGCTGGATTCAGGGACACCCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCAGTGCGGAATCACCATGGGCTGTTGTTGACGGACACAATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGAGTGCGCACACATGATCTCAAGAAGATAGCGTCCTATGTTGCCCACAACTTTAACAAACTCTTCAGCATGGAAAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGGCTCCAGAAACTGCGGAAGCTAATCCCAAATATCCCATTCCAGCATGCTACTCAGGGGGGCCAACGCTGTGGCTATACCAACTATGTTGACAATGTTGTCTTTAAgtaaggctgagtctgttaagacccggacagtggatgctagagtgtttttc #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCC-GCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTCGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCAC-CGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAggtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCC-GCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTCGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACC-GCTCACCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAggtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTCGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGC-CGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTCGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCG-CTCACCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGC-CGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTCGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCG-CTCACCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTCGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTCGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCTGAAGCCGGCTCGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAA-GAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctctggtgcttgcctgacaagcctcttcctccattttgcattccagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTGCAGAATGGGTCAAGCCGGACCGAGACAGAAGCTCAGGCAGAACGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGG-CTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtactgtaggttggtcagggtggaaacagaccttaaaaccctcatctttt Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAA-GAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctctggtgcttgcctgacaagcctcttcctccattttgcattccagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTGCAGAATGGGTCAAGCCGGACCGAGACAGAAGCTCAGGCAGAACGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTAC-AGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtactgtaggttggtcagggtggaaacagaccttattaccccacccctat Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctctggtgcttgcctgacaagcctcttcctccattttgcattccagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTGCAGAATGGGTCAAGCCGGACCGAGACAGAAGCTCAGGCAGAACGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtactgtaggttggtcagggtggaaacagaccttaaaaccctcatctttt Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAA-GAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctctggtgcttgcctgacaagcctcttcctccattttgcattccagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTGCAGAATGGGTCAAGCCGGACCGAGACAGAAGCTCAGGCAGAACGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACA-GGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtactgtaggttggtcagggtggaaacagaccttaaaaccctcatctttt Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAA-GAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTA---------------------------------------------------- ttatctctggtgcttgcctgacaagcctcttcctccattttgcattccagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTGCAGAATGGGTCAAGCCGGACCGAGACAGAAGCTCAGGCAGAACGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACA-GGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAGTACTGTAGGTTGGTCAGGGTGGAAACAGACCTTAAAACCCTCATCTTTT Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctctggtgcttgcctgacaagcctcttcctccattttgcattccagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTGCAGAATGGGTCAAGCCGGACCGAGACAGAAGCTCAGGCAGAACGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtactgtaggttggtcagggtggaaacagaccttaaaaccctcatctttt Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctctggtgcttgcctgacaagcctcttcctccattttgcattccagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTGCAGAATGGGTCAAGCCGGACCGAGACAGAAGCTCAGGCAGAACGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtactgtaggttggtcagggtggaaacagaccttaaaaccctcatctttt Alignment from GeneWise -----------------------------------------------AAGGTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG TTATCTCTGGTGCTTGCCTGACAAGCCTCTTCCTCCATTTTGCATTCCAGGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTGCAGAATGGGTCAAGCCGGACCGAGACAGAAGCTCAGGCAGAACGAGCTCTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtactgtaggttggtcagggtggaaacagaccttaaaaccctcatctttt #### Pcx_ID569_18 --> 0 - 0 Original Alignment GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTT-GCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtggaaacagaccttattaccccacccctattccccagGTGCTAAAGGACCTGCCAAGAATTGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTAAACCTGAAGGAGTTGGATAAGGGCCTAATTGATAGACACGGCGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCCATGTACCCATATGTTTTTCACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTAG-TAGCCTAAATACTCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgaggggcttctatatttgtgtctactcatccccagggcctccagtaat Alignment from CESAR GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTT-GCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtggaaacagaccttattaccccacccctattccccagGTGCTAAAGGACCTGCCAAGAATTGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTAAACCTGAAGGAGTTGGATAAGGGCCTAATTGATAGACACGGCGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCCATGTACCCATATGTTTTTCACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTA-GTAGCCTAAATACTCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgaggggcttctatatttgtgtctactcatccccagggcctccagtaat Alignment from Spaln_aa2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtggaaacagaccttattaccccacccctattccccagGTGCTAAAGGACCTGCCAAGAATTGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTAAACCTGAAGGAGTTGGATAAGGGCCTAATTGATAGACACGGCGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCCATGTACCCATATGTTTTTCACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTAGTAGCCTAAATACTCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgaggggcttctatatttgtgtctactcatccccagggcctccagtaat Alignment from Spaln_nt2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTG-CTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtggaaacagaccttattaccccacccctattccccagGTGCTAAAGGACCTGCCAAGAATTGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTAAACCTGAAGGAGTTGGATAAGGGCCTAATTGATAGACACGGCGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCCATGTACCCATATGTTTTTCACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTAG-TAGCCTAAATACTCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgaggggcttctatatttgtgtctactcatccccagggcctccagtaat Alignment from Pairagon GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTT-GCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtggaaacagaccttattaccccacccctattccccagGTGCTAAAGGACCTGCCAAGAATTGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTAAACCTGAAGGAGTTGGATAAGGGCCTAATTGATAGACACGGCGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCCATGTACCCATATGTTTTTCACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTAG-TAGCCTAAATACTCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgaggggcttctatatttgtgtctactcatccccagggcctccagtaat Alignment from Exonerate_protein2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtggaaacagaccttattaccccacccctattccccagGTGCTAAAGGACCTGCCAAGAATTGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTAAACCTGAAGGAGTTGGATAAGGGCCTAATTGATAGACACGGCGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCCATGTACCCATATGTTTTTCACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTAGTAGCCTAAATACTCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgaggggcttctatatttgtgtctactcatccccagggcctccagtaat Alignment from Exonerate_coding2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtggaaacagaccttattaccccacccctattccccagGTGCTAAAGGACCTGCCAAGAATTGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTAAACCTGAAGGAGTTGGATAAGGGCCTAATTGATAGACACGGCGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCCATGTACCCATATGTTTTTCACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTAGTAGCCTAAATACTCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgaggggcttctatatttgtgtctactcatccccagggcctccagtaat Alignment from GeneWise GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG aggttggtcagggtggaaacagaccttattaccccacccctattccccagGTGCTAAAGGACCTGCCAAGAATTGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTAAACCTGAAGGAGTTGGATAAGGGCCTAATTGATAGACACGGCGAAGATGTTTCACAAGAGGAAGTGCTCTCTGCAGCCATGTACCCATATGTTTTTCACACAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTAGTAGCCTAAATACTCGTCTGTTTCTTCAAGGACCCAAAATTGCAGAAGAATTTGAGgtgaggggcttctatatttgtgtctactcatccccagggcctccagtaat #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATCAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGG-TGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATCAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAG-GTGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGAC-AGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATcAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGT-GAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGA-CAGTGGTGTGGAAG------TGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATCAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGG-TGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGA-CAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATCAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGG-TGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGT---GGTGTGGAAGTGTACTACCGGGAAGGA---GAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATCAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGTGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGT---GGTGTGGAAGTGTACTACCGGGAAGGA---GAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATCAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGTGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGT---GGTGTGGAAGTGTACTACCGGGAAGGAGAG---GATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATCAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGTGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTG-ACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTACAGAGGTGCCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACA-TGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTG-ACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTACAGAGGTGCCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGAC-ATGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTACAGAGGTGCCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACATGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTG-ACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTACAGAGGTGCCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACA-TGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCT-GACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTACAGAGGTGCCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACA-TGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTACAGAGGTGCCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACATGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTACAGAGGTGCCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACATGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgtggccagaagaacatcactgtatttcctttccgttggacagGGGAAGAAGACAAAATCTACAGAGGTGCCTCGGCTGCACCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCCACCCCATCCTTGCCACTCCGGGAAGAGAGCTCAGACATGAGGATGAGCAGCCACACCAGGCTAAGgtatggcatcttcttagccactgtatgactcctaggaacacttaatgcca #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAG-AAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGCAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAG-GCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from CESAR AAGAAGAAGGGCAAG-AAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGCAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAA-GGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAG-AAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGcAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGG-CTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAG-AAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGCAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAG-GCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Pairagon AAGAAGAAGGGCAAG-AAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGCAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAG-GCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGCAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from Exonerate_coding2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGCAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactcagttcttttcttgcctgtacagAAGAAGAAAGGTAAGCAAGGAAAGGGAGCTGGAGAAGCAAAAGGCAAAGAAAGGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaagtactctgactttcctgcagtccagatgagtagtcggttataagct #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCC-CTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcaggGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCCTTGCTAAATTTGGAAAACAAGTATGGCTCCC-GGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCC-CTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcaggGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCGG-CATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCT-GCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCCTTGCTAAATTTGGAAAACAAGTATGGCTC-CCGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCC-TGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCCTTGCTAAATTTGGAAAACAAGTATGGCTCCC-GGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCCTTGCTAAATTTGGAAAACAAGTATGGCTCCCGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAA-CGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACCGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATG-TTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAAcgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAA-CGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACCGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATAT-GTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAAcgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACCGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAAC-GGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACCGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATAT-GTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAA-CGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACCGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATAT-GTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACCGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Exonerate_coding2genome ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacaggaagctggagagctgtataaccgaatgatcaaaccggttccagcaggaggaggctgtctgtatcaaatatgttcctttggtttgggaaggagccaggctggggctggagtgagtcactatgtcctacagcgagcaccagagtgcttgccggccaaagaacgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACCGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACC-TACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACA-TGACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACC-TACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACA-TGACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACC-TACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACAT-GACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCA-CCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACAT-GACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTC-GCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGG-GTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTC-GCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTG-GGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTC-GCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTcGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGGG-TCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTG-TCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGG-GTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTG-TCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGG-GTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTC-GCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGGGTCCCGGCGGAGCCAGGtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTC-GCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGGGTCCCGGCGGAGCCAGGtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTCGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGGGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATA-CTGGCGGCATGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from CESAR GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCAT-ACTGGCGGCATGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGcTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAC-TGGCGGCATGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCA-TACTGGCGGCATGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Pairagon GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCAT-ACTGGCGGCATGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCAC--AACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAC---TGGCGGCATGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCAC--AACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAC---TGGCGGCATGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from GeneWise ----CTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAC-TGGCGGCATGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAG-ATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtaggTACACCTGCCCCTTTGTTGAGAAGTTCTCGATTGAACATAGAGACCTACTACTTGCCGGATGGGG-TCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTggtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAG-ATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtaggTACACCTGCCCCTTTGTTGAGAAGTTCTCGATTGAACATAGAGACCTACTACTTGCCGGATG-GGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTggtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCTCGATTGAACATAGAGACCTACTACTTGCCGGATGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAG-ATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCTCGATTGAACATAGAGACCTACTACTTGCCGGAT-GGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAG-ATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCTCGATTGAACATAGAGACCTACTACTTGCCGGAT-GGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCTCGATTGAACATAGAGACCTACTACTTGCCGGATGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCTCGATTGAACATAGAGACCTACTACTTGCCGGATGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCTCGATTGAACATAGAGACCTACTACTTGCCGGATGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAG-TGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg acagggcaccatcttgagcttccaaggtcacatattgtctttgtgatcaggtGGTGTATCTCCACAGAGTTTGTCTGAACTGGCACATGCAGAACGTTGCCCGAGACTCCAAAAACAGCT-TGAGGAAGAATTCTTTGATCCCCATggttagcaagctgtaaagacagattgtagagaatgctgttacaggcaagtt Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAG-TGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg acagggcaccatcttgagcttccaaggtcacatattgtctttgtgatcaggtGGTGTATCTCCACAGAGTTTGTCTGAACTGGCACATGCAGAACGTTGCCCGAGACTCCAAAAACAGC-TTGAGGAAGAATTCTTTGATCCCCATggttagcaagctgtaaagacagattgtagagaatgctgttacaggcaagtt Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG acagggcaccatcttgagcttccaaggtcacatattgtctttgtgatcagGTGGTGTATCTCCACAGAGTTTGTCTGAACTGGCACATGCAGAACGTTGCCCGAGACTCCAAAAACAGCTTGAGGAAGAATTCTTTGATCCCCATGgttagcaagctgtaaagacagattgtagagaatgctgttacaggcaagtt Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAG-TGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG acagggcaccatcttgagcttccaaggtcacatattgtctttgtgatcagGTGGTGTATCTCCACAGAGTTTGTCTGAACTGGCACATGCAGAACGTTGCCCGAGACTCCAAAAACAGCT-TGAGGAAGAATTCTTTGATCCCCATGgttagcaagctgtaaagacagattgtagagaatgctgttacaggcaagtt Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAG-TGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG acagggcaccatcttgagcttccaaggtcacatattgtctttgtgatcagGTGGTGTATCTCCACAGAGTTTGTCTGAACTGGCACATGCAGAACGTTGCCCGAGACTCCAAAAACAGCT-TGAGGAAGAATTCTTTGATCCCCATGgttagcaagctgtaaagacagattgtagagaatgctgttacaggcaagtt Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAG-TGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGC--TCCGAGGAAGAATTCTTTGATGCCCATG acagggcaccatcttgagcttccaaggtcacatattgtctttgtgatcagGTGGTGTATCTCCACAGAGTTTGTCTGAACTGGCACATGCAGAACGTTGCCCGAGACTCCAAAAACAGCTT---GAGGAAGAATTCTTTGATCCCCATGgttagcaagctgtaaagacagattgtagagaatgctgttacaggcaagtt Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAG-TGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGC--TCCGAGGAAGAATTCTTTGATGCCCATG acagggcaccatcttgagcttccaaggtcacatattgtctttgtgatcagGTGGTGTATCTCCACAGAGTTTGTCTGAACTGGCACATGCAGAACGTTGCCCGAGACTCCAAAAACAGCTT---GAGGAAGAATTCTTTGATCCCCATGgttagcaagctgtaaagacagattgtagagaatgctgttacaggcaagtt Alignment from GeneWise GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG acagggcaccatcttgagcttccaaggtcacatattgtctttgtgatcagGTGGTGTATCTCCACAGAGTTTGTCTGAACTGGCACATGCAGAACGTTGCCCGAGACTCCAAAAACAGCTTGAGGAAGAATTCTTTGATCCCCATGgttagcaagctgtaaagacagattgtagagaatgctgttacaggcaagtt #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCC-AAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTCAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTG-GGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCaagtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCC-AAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTCAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTT-GGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCaagtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTCAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTC-CAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTCAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTG-GGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTC-CAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTCAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTG-GGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTCAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTCAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTCAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAG-GGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagtCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGCGGTGCAGTGGCCACTGTCATTGCTCACACCAACC-GGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAG-GGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagtCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGCGGTGCAGTGGCCACTGTCATTGCTCACACCAAC-CGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGCGGTGCAGTGGCCACTGTCATTGCTCACACCAACCGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAG-GGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGCGGTGCAGTGGCCACTGTCATTGCTCACACCAACC-GGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAG-GGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGCGGTGCAGTGGCCACTGTCATTGCTCACACCAACC-GGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGCGGTGCAGTGGCCACTGTCATTGCTCACACCAACCGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGCGGTGCAGTGGCCACTGTCATTGCTCACACCAACCGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGCGGTGCAGTGGCCACTGTCATTGCTCACACCAACCGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGAT-GCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcggagcctcctgtttgtctcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATCGCTCTCTGCCACAGTGCAAGCGCAGGCCCAGGGAGCCAGGGCA-CAGCCGCCGTGGGAGCATGgtaggcgtccggcccagggagccagggcagcaaccaccatgccagcatgg Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGAT-GCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcggagcctcctgtttgtctcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATCGCTCTCTGCCACAGTGCAAGCGCAGGCCCAGGGAGCCAGGGC-ACAGCCGCCGTGGGAGCATGgtaggcgtccggcccagggagccagggcagcaaccaccatgccagcatgg Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGAT-GCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcggagcctcctgtttgtctcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATcGCTCTCTGCCACAGTGCAAGCGCAGGCCCAGGGAGCCAGGGCAC-AGCCGCCGTGGGAGCATGgtaggcgtccggcccagggagccagggcagcaaccaccatgccagcatgg Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGAT-GCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcggagcctcctgtttgtctcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATCGCTCTCTGCCACAGTGCAAGCGCAGGCCCAGGGAGCCAGGGCA-CAGCCGCCGTGGGAGCATGgtaggcgtccggcccagggagccagggcagcaaccaccatgccagcatgg Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGAT-GCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcggagcctcctgtttgtctcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATCGCTCTCTGCCACAGTGCAAGCGCAGGCCCAGGGAGCCAGGGCA-CAGCCGCCGTGGGAGCATGgtaggcgtccggcccagggagccagggcagcaaccaccatgccagcatgg Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGAT-GCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCAT tccatacaggtaaaaaaaccaccatattcggagcctcctgtttgtctcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATCGCTCTCTGCCACAGTGCAAGCGCAGGCCCAGGGAGCCAGGGCACAGCCGCCGTGGGAGCATGgtaggcgtccggcccagggagccagggcagcaaccaccatgccagcatgg Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGAT-GCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCAT tccatacaggtaaaaaaaccaccatattcggagcctcctgtttgtctcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATCGCTCTCTGCCACAGTGCAAGCGCAGGCCCAGGGAGCCAGGGCACAGCCGCCGTGGGAGCATGgtaggcgtccggcccagggagccagggcagcaaccaccatgccagcatgg Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcggagcctcctgtttgtctcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATCGCTCTCTGCCACAGTGCAAGCGCAGGCCCAGGGAGCCAGGGCACAGCCGCCGTGGGAGCATGgtaggcgtccggcccagggagccagggcagcaaccaccatgccagcatgg #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCA-CTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACCTCTACTGCCCAGAAGCACTTACAGCCTTCC-CACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCA-CTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACCTCTACTGCCCAGAAGCACTTACAGCCT-TCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACCTCTACTGCCCAGAAGCACTTACAGCCTTCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCAC-TGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACCTCTACTGCCCAGAAGCACTTACAGCCTT-CCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCA-CTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACCTCTACTGCCCAGAAGCACTTACAGCCTT-CCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACCTCTACTGCCCAGAAGCACTTACAGCCTTCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACCTCTACTGCCCAGAAGCACTTACAGCCTTCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACCTCTACTGCCCAGAAGCACTTACAGCCTTCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAG-CCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACTGGAGAAGAGgtattacatcttttgttttctacagGTTGATGTCTATGTCATGACACAGCCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAG-GGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAG-CCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACTGGAGAAGAGgtcaaacatcttttgttttctacagGTTGATGTCTATGTCATGACACAGCCCTCTGTCAGGCAAGTGGATCCATTTTGGCACA-GGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAGAAGAGGTATTACATCTTTTGTTTTCTACAgGTTGATGTCTATGTCATGACACAGCCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAG-CCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAGAAGAGGTATTACATCTTTTGTTTTCTACAGGTTGATGTCTATGTCATGACACAGCCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAG-GGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGCCA-CTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAGAAGAGGTATTACATCTTTTGTTTTCTACAGGTTGATGTCTATGTCATGACACAGCCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAG-GGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAgaagaggtattacatcttttgttttctacag------GTTGATGTCTATGTCATGACACAGCCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from Exonerate_coding2genome TGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAgaagaggtattacatcttttgttttctacag------GTTGATGTCTATGTCATGACACAGCCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACTGGAGAAGAGgtattacatcttttgttttctacagGTTGATGTCTATGTCATGACACAGCCCTCTGTCAGGCAAGTGGATCCATTTTGGCACAGGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGTCATCAGAACATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagaaagttagcaagtagctcagctcctgtgaaacaccaacttacttt #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTG-GCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tgcgacttgtcttctgtgtggataggagaaatacacaatctttcttacaggCACTGGCAGGACTCTGACTACTTGATTGTCTATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGCGCCTGGTTATCACAACATACCTTCCCCCATGGAGTTG-TTCGTTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAGCCATGTTTTTGCAGAGCCTGGTCCAGGAGgtaaagtgacttgggcagggcctgtcctgcttgggtctaacctagtttga Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTG-GCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tgcgacttgtcttctgtgtggataggagaaatacacaatctttcttacaggCACTGGCAGGACTCTGACTACTTGATTGTCTATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGCGCCTGGTTATCACAACATACCTTCCCCCATGGAGTTG-TTCGTTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAGCCATGTTTTTGCAGAGCCTGGTCCAGGAGgtaaagtgacttgggcagggcctgtcctgcttgggtctaacctagtttga Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tgcgacttgtcttctgtgtggataggagaaatacacaatctttcttacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGCGCCTGGTTATCACAACATACCTTCCCCCATGGAGTTGTTCGTTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAGCCATGTTTTTGCAGAGCCTGGTCCAGGAGgtaaagtgacttgggcagggcctgtcctgcttgggtctaacctagtttga Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTG-GCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tgcgacttgtcttctgtgtggataggagaaatacacaatctttcttacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGCGCCTGGTTATCACAACATACCTTCCCCCATGGAGTTGT-TCGTTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAGCCATGTTTTTGCAGAGCCTGGTCCAGGAGgtaaagtgacttgggcagggcctgtcctgcttgggtctaacctagtttga Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTG-GCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tgcgacttgtcttctgtgtggataggagaaatacacaatctttcttacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGCGCCTGGTTATCACAACATACCTTCCCCCATGGAGTTGT-TCGTTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAGCCATGTTTTTGCAGAGCCTGGTCCAGGAGgtaaagtgacttgggcagggcctgtcctgcttgggtctaacctagtttga Alignment from Exonerate_protein2genome tgcgacttgtcttctgtgtggataggagaaatacacaatctttcttacaggcactggcaggactctgactacttgattgtctatgcaactggtcggccagatatgcaaaaacaccgtgttgtgcgcctggttatcacaacataccttcccccatggagttgttcgttctgtgatgtccttatgcatgacccattgcgccagaaagccatgtttttgcagagcctggtccaggaggtaaagtgacttgggcagggcctgtcctgcttgggtctaacctagtttga Alignment from Exonerate_coding2genome tgcgacttgtcttctgtgtggataggagaaatacacaatctttcttacaggcactggcaggactctgactacttgattgtctatgcaactggtcggccagatatgcaaaaacaccgtgttgtgcgcctggttatcacaacataccttcccccatggagttgttcgttctgtgatgtccttatgcatgacccattgcgccagaaagccatgtttttgcagagcctggtccaggaggtaaagtgacttgggcagggcctgtcctgcttgggtctaacctagtttga Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tgcgacttgtcttctgtgtggataggagaaatacacaatctttcttacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGCGCCTGGTTATCACAACATACCTTCCCCCATGGAGTTGTTCGTTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAGCCATGTTTTTGCAGAGCCTGGTCCAGGAGgtaaagtgacttgggcagggcctgtcctgcttgggtctaacctagtttga #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGG-TCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCT-TCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGG-TCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTC-TTCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATAT-GGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATgGGCTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTT-CCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCT-TCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGG-TCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCT-TCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Exonerate_protein2genome tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccaggttgatctgaacatcatagctggatatgggctccccaaaagatgtagcagtttatgcagcattaggactcttccaagccatacctatattattggccgtggcatccgtacattgcaggcccagtgccaggtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Exonerate_coding2genome tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccaggttgatctgaacatcatagctggatatgggctccccaaaagatgtagcagtttatgcagcattaggactcttccaagccatacctatattattggccgtggcatccgtacattgcaggcccagtgccaggtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGCTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTTCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca #### Pkd2l1_ID8954_14 --> 1 - 0 Original Alignment gCTCACAAGGAGAGTT-CTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacaggCTTACAAGGAGAGTACTTGCAGCTGCAATGTATTTTGGAAGGAG-TGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from CESAR gCTCACAAGGAGAGTT-CTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacaggCTTACAAGGAGAGTACTTGCAGCTGCAATGTATTTTGGAAGGAG-TGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Spaln_aa2Genome GCTCACAAGGAGAGTT-CTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTAcTTGCAGCTGCAATGTATTTTGGAAGGAGT-GTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Spaln_nt2Genome GCTCACAAGGAGAGTTCT-GCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTACTTGCAGCTGCAATGTATTTTGGAAGGAG-TGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Pairagon GCTCACAAGGAGAGTTC-TGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTACTTGCAGCTGCAATGTATTTTGGAAGGAG-TGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Exonerate_protein2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTACTTGCAGCTGCAATGTATTTTGGAAGGAGTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Exonerate_coding2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTACTTGCAGCTGCAATGTATTTTGGAAGGAGTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from GeneWise GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAGTACTTGCAGCTGCAATGTATTTTGGAAGGAGTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGA-ATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGACATCCTGGGCCCTGTGTACTTTGTCACCTATG-CTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGA-ATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGACATCCTGGGCCCTGTGTACTTTGTCACCTAT-GCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGACATCCTGGGCCCTGTGTACTTTGTCACCTATGCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGA-ATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGACATCCTGGGCCCTGTGTACTTTGTCACCTATG-CTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGA-ATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGACATCCTGGGCCCTGTGTACTTTGTCACCTATG-CTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGACATCCTGGGCCCTGTGTACTTTGTCACCTATGCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGACATCCTGGGCCCTGTGTACTTTGTCACCTATGCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGACATCCTGGGCCCTGTGTACTTTGTCACCTATGCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCC-ACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCA-GTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCatgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCC-ACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATC-AGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCatgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCC-ACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCcACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCAG-TTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCC-ACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCA-GTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCT-CCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCA-GTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCC-ACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATC--ATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCAG---TTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTC---CACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCA--TCCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCAT-CAGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCAGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGGCCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAG-GGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGGCCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTA-GGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG--------- tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGGcCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGGGAAGAGAAACCCAAGGTATTGCCTGgcggagttgcatatacaggccaataggggagctggtcaac Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACG-CCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGGCCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAG-GGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAAC-GCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGGCCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAG-GGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAA tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGGCCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGC-CTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGGCCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTA-GGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from GeneWise ----CAACA tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagttgggggaggcccagaaacagcagcatgaacggcctagtggcaggacaacagcaagtcctccagcaattagggaagagaaacccaaggtattgcctggcggagttgcatatacaggccaataggggagCTGGTCAAC #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTC-AAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCCAAGGAAGTTGTCCTGGATACACACACAACCCAAT-CAAGAGGCTAAGGGAACTGAAAGAAaggtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from CESAR GCTCATCAGCGGCTC-AAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCCAAGGAAGTTGTCCTGGATACACACACAACCCAA-TCAAGAGGCTAAGGGAACTGAAAGAAaggtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Spaln_aa2Genome GAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattaggcgcatcagtgggtccaagGAAGTTGTCCTGGATACACACACAACCCAATC-AAGAGGCTAAGGGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Spaln_nt2Genome GCTCATCAGCGGCTC-AAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCCAAGGAAGTTGTCCTGGATACACACACAACCCA-ATCAAGAGGCTAAGGGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Pairagon GCTCATCAGCGGCT-CAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCCAAGGAAGTTGTCCTGGATACACACACAACCCAA-TCAAGAGGCTAAGGGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCCAAGGAAGTTGTCCTGGATACACACACAACCCAATCAAGAGGCTAAGGGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Exonerate_coding2genome GCTCATCAGCG---GCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAG--TGGGTCCAAGGAAGTTGTCCTGGATACACACACAACCCAATC-AAGAGGCTAAGGGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from GeneWise -CGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattaggcgcatcagTGGGTCCAAGGAAGTTGTCCTGGATACACACACAACCCAATC-AAGAGGCTAAGGGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGA-GAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ttgtgacaagttgtggcattcagagagtatctttttacttttttttccaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGCGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGC-GAGGGAAGCCCAGGGTGATGTGGAAACCAAACGCAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgaaggcaaggactgacatcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGA-GAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ttgtgacaagttgtggcattcagagagtatctttttacttttttttccaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGCGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAG-CGAGGGAAGCCCAGGGTGATGTGGAAACCAAACGCAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgaaggcaaggactgacatcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ttgtgacaagttgtggcattcagagagtatctttttacttttttttccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGCGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCGAGGGAAGCCCAGGGTGATGTGGAAACCAAACGCAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgaaggcaaggactgacatcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGA-GAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ttgtgacaagttgtggcattcagagagtatctttttacttttttttccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGCGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGC-GAGGGAAGCCCAGGGTGATGTGGAAACCAAACGCAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgaaggcaaggactgacatcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTAT-CGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ttgtgacaagttgtggcattcagagagtatctttttacttttttttccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGCGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGC-GAGGGAAGCCCAGGGTGATGTGGAAACCAAACGCAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgaaggcaaggactgacatcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ttgtgacaagttgtggcattcagagagtatctttttacttttttttccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGCGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCGAGGGAAGCCCAGGGTGATGTGGAAACCAAACGCAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgaaggcaaggactgacatcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ttgtgacaagttgtggcattcagagagtatctttttacttttttttccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGCGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCGAGGGAAGCCCAGGGTGATGTGGAAACCAAACGCAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgaaggcaaggactgacatcc Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ttgtgacaagttgtggcattcagagagtatctttttacttttttttccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGCGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCGAGGGAAGCCCAGGGTGATGTGGAAACCAAACGCAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgaaggcaaggactgacatcc #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCT-ATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCCATGGTGAAACTTCGCAGCCGACAGGACCAAGACT-ACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCctgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCT-ATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCCATGGTGAAACTTCGCAGCCGACAGGACCAAG-ACTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCctgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCCATGGTGAAACTTCGCAGCCGACAGGACCAAGACTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCT-ATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCCATGGTGAAACTTCGCAGCCGACAGGACCAAGA-CTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGG-CTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCCATGGTGAAACTTCGCAGCCGACAGGACCAAGA-CTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCCATGGTGAAACTTCGCAGCCGACAGGACCAAGACTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCCATGGTGAAACTTCGCAGCCGACAGGACCAAGACTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from GeneWise -------------TTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagCCACACCAATTTGAATGTACAACTTTTTCCCACAGAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCCATGGTGAAACTTCGCAGCCGACAGGACCAAGACTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGG-ACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGCACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAAC-TTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGG-ACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGCACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAA-CTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGG-ACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGcACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACT-TTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGG-ACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGCACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAA-CTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGG-ACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGCACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAA-CTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGG-ACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAA tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGCACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGG-ACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAA tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGCACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaccaaacccctcccattaacttccattactttttactttccttacagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGCACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACTTTTGACTTCCCCAAGgtatggtgcctaggagtggctgatacaccaagactatgttctgatagcag #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAG-CTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagaTACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCA-TTTCCAGACTCTGggtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagaTACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTC-ATTTCCAGACTCTGggtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTtACCCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAT-TTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGC-TCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTC-ATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCA-GCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTC-ATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catgacaataggtctgccaggccattgctgtttgtatgatttctttgtagaaAGGAACAAGTGCTTTAGGATGCTCATCCTTTGTGGAAACCAAAGCAATGGACCAAC-GACCAAGAGCCCTATGGAGTTTGTGgagtgagctcaccaatggcatggctggtgtggggccaggaggcctaccttgt Alignment from CESAR aaAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catgacaataggtctgccaggccattgctgtttgtatgatttctttgtagaaAGGAACAAGTGCTTTAGGATGCTCATCCTTTGTGGAAACCAAAGCAATGGACCAA-CGACCAAGAGCCCTATGGAGTTTGTGgagtgagctcaccaatggcatggctggtgtggggccaggaggcctaccttgt Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catgacaataggtctgccaggccattgctgtttgtatgatttctttgtagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTTGTGGAAACCAAAGCAATGGACCAACGACCAAGAGCCCTATGGAGTTTGTGGAgtgagctcaccaatggcatggctggtgtggggccaggaggcctaccttgt Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catgacaataggtctgccaggccattgctgtttgtatgatttctttgtagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTTGTGGAAACCAAAGCAATGGACCAAC-GACCAAGAGCCCTATGGAGTTTGTGGAgtgagctcaccaatggcatggctggtgtggggccaggaggcctaccttgt Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catgacaataggtctgccaggccattgctgtttgtatgatttctttgtagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTTGTGGAAACCAAAGCAATGGACCAAC-GACCAAGAGCCCTATGGAGTTTGTGGAgtgagctcaccaatggcatggctggtgtggggccaggaggcctaccttgt Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catgacaataggtctgccaggccattgctgtttgtatgatttctttgtagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTTGTGGAAACCAAAGCAATGGACCAACGACCAAGAGCCCTATGGAGTTTGTGGAgtgagctcaccaatggcatggctggtgtggggccaggaggcctaccttgt Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catgacaataggtctgccaggccattgctgtttgtatgatttctttgtagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTTGTGGAAACCAAAGCAATGGACCAACGACCAAGAGCCCTATGGAGTTTGTGGAgtgagctcaccaatggcatggctggtgtggggccaggaggcctaccttgt Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catgacaataggtctgccaggccattgctgtttgtatgatttctttgtagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTTGTGGAAACCAAAGCAATGGACCAACGACCAAGAGCCCTATGGAGTTTGTGGAgtgagctcaccaatggcatggctggtgtggggccaggaggcctaccttgt #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCT-GAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagaGCAAAGCAGCAC---AAGATGGCTCGAATACTGCCGGTCTATCTTTGGGGATGCGCTAC-TATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCT-GAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagaGCAAAGCAGCAC---AAGATGGCTCGAATACTGCCGGTCTATCTTTGGGGATGCGCTAC-TATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCT-GAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCAC---AAGATGGCTcGAATACTGCCGGTCTATCTTTGGGGATGCGCTACT-ATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCT-GAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCA---CAAGATGGCTCGAATACTGCCGGTCTATCTTTGGGGATGCGCTACT-ATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCT-GAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCA---CAAGATGGCTCGAATACTGCCGGTCTATCTTTGGGGATGCGCTACT-ATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCAC---AAGATGGCTCGAATACTGCCGGTCTATCTTTGGGGATGCGCTACTATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagAGCAAAGCAGCACAAGATGGCTCGA--ATACTGCCGGTCTATCTTTGGGGATGCGCTACT-ATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttagtggccctagacccgtgcagagcattgtttgtttgtttaatgacagagcaaagCAGC---------ACAAGATGGCTCGAATACTGCCGGTCTATCTTTGGGGATGCGCTACT-ATTGACCCTCTTGACAAATACCCAgtaagtgacagtttggactggatccaggtgtatgagggggagggcagcct #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAG-CAGCTCATGGACTTTATCAAC------CAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAG-CCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaGGCATGAAGGGCAAGCCCTACCTT--CTTGAGCCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGA-GCCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCCA---GCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAG------------------AGCCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGC-AGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCT---TCTTGAGCCAGCTGATGGACTTTGTGAACC--AACAAGAGA-AGCAGAGAGCCCAAGA-----------------TT--GTCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAG-CAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCT---TCTTGAGCCAGCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAG-CCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Exonerate_protein2genome CCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaggcatgaagggcaagccctaccttcttgagccagctgatggactttgtgaaccaacaagagaagcagagagcCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Exonerate_coding2genome catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaggcatgaagggcaagccctaccttcttgagccagctgatggactttgtgaaccaacaagagaagcagagagcccaagattgtcctcacaagcccgtctacttattgaggagtatgagacaaacaaacagtttctggagcgtggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCCA---GCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAG------------------AGCCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGAT-CCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATCTTAGTAACTACCACATTCTTGAACTTCATGGCTG-GCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCA-GTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATCTTAGTAACTACCACATTCTTGAACTTCATGGCT-GGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATCTTAGTAACTACCACATTCTTGAACTTCATGGCTGGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCC-AGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATCTTAGTAACTACCACATTCTTGAACTTCATGGCTG-GCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATC-CAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATCTTAGTAACTACCACATTCTTGAACTTCATGGCTG-GCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATCTTAGTAACTACCACATTCTTGAACTTCATGGCTGGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Exonerate_coding2genome gcccctcctcttcttgttcattctatacctttggtgtttgtattttataggaccctaagattcgagaagtttttggcggccctgatacacgactggaggagagattgatgacagtggttgctgggccggatcttagtaactaccacattcttgaacttcatggctggcaggatggcacagtcaaggtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATCTTAGTAACTACCACATTCTTGAACTTCATGGCTGGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGCGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTT-TGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from CESAR GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGCGATATCAGCTCAATCAGAGACACAAGAACAGGTC-GTTTGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Spaln_aa2Genome GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGcGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTTT-GCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Spaln_nt2Genome GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGCGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTT-TGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Pairagon GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGCGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTT-TGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Exonerate_protein2genome tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcaggaggtggacacactgcgatatcagctcaatcagagacacaagaacaggtcgtttgctcgcctgcccaaagtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Exonerate_coding2genome tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcaggaggtggacacactgcgatatcagctcaatcagagacacaagaacaggtcgtttgctcgcctgcccaaagtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from GeneWise --- tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcaggaggtggacacactgcgatatcagctcaatcagagacacaagaacaggtcgtttgctcgcctgcccaaagtatatcagctagttttgcagtatataagcaccataacagttacaagGAT #### Plce1_ID7626_12 --> 1 - 1 Original Alignment cATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCC-TCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAg catatttttattccgacataaaggctacaaaatttttttttaaactctagcATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCCTCAGAGTCCACCCCTCTCTATACCAACTGGA-AATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from CESAR cATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCC-TCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAg catatttttattccgacataaaggctacaaaatttttttttaaactctagcATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCCTCAGAGTCCACCCCTCTCTATACCA-ACTGGAAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Spaln_aa2Genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCA catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCCTCAGAGTCCACCCCTCTCTATACCAACTGGAAATTGAGGAAAATACCAGTGATCTTCAgccagacctgggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Spaln_nt2Genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTG-----TGAGATC---TACCCTCAGAGTCCACCCCTCTCTATACCAA-CTGGAAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Pairagon CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTG-------TACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTGAGATCTAC---------------CCTCAGAGTCCACCCCTCTCTATACCAACTGGA-AATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Exonerate_protein2genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCCTCAGAGTCCACCCCTCTCTATACCAACTGGAAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Exonerate_coding2genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCCTCAGAGTCCACCCCTCTCTATACCAACTGGAAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from GeneWise CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCCTCAGAGTCCACCCCTCTCTATACCAACTGGAAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggtTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGCAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGAC-TAACTCTAAGCAGTATCAAGTTTTCaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggtTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGCAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGA-CTAACTCTAAGCAGTATCAAGTTTTCaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGCAA---GGTGACTGGGCATATCCTAGTTTTGTTTGGAAATGGACTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGCAAGGTGACTGGGCATATCCTAGT---TTTGTTTGGAAATGGA-CTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGCAAGGTGACTGGGCATATCCTAGT---TTTGTTTGGAAATGGA-CTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTGCAGCCAGGTACTTCTCACGT gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGCAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGACTAACTCTAAGCAGTATCAAG---TTTTCAAGTAATTAAAAATAGGAAACATCACACAGctctttagatctctaagtgtgt Alignment from Exonerate_coding2genome gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggttggtggtaccagataactgtcaccctctctggacagcaaggtgactgggcatatcctagttttgtttggaaatggactaactctaagcagtatcaagttttcaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTC-- gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGCAA---GGTGACTGGGCATATCCTAGTTTTGTTTGGAAATGGACTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGG-AGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcaggtATCACAAGGTTGCTGCAGCGCTGGCAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGG-GTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCacgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from CESAR gtATCACAAGG---CTGCAGCGCTGG-AGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcaggtATCACAAGGTTGCTGCAGCGCTGGCAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAG-GGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCacgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Spaln_aa2Genome GTATCACAAGG---CTGCAGCGCTGG-AGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGcAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGG-TATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Spaln_nt2Genome GTATCACAAGG---CTGCAGCGCTGG-AGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGCAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGG-GTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGG-AGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGCAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGG-GTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Exonerate_protein2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGCAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Exonerate_coding2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGCAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACGtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from GeneWise GTATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGCAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACGtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCAC-CCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCCACGATACTTCGGTCCAAACTTGCTCAACACGG-GAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCAC-CCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCCACGATACTTCGGTCCAAACTTGCTCAACACG-GGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCCACGATACTTCGGTCCAAACTTGCTCAACACGGGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCA-CCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCCACGATACTTCGGTCCAAACTTGCTCAACACGG-GAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Pairagon ATTTCCCTGGAGCACGAGATCCTCCTGCACCC-ACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCCACGATACTTCGGTCCAAACTTGCTCAACACGG-GAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Exonerate_protein2genome TATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttcctTTTAAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCCACGATACTTCGGTCCAAACTTGCTCAACACGGGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Exonerate_coding2genome TTCCCTGGAGCACGAGATCCTCCTGCA-CCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagatTTCCCTGGAGCACGAGATCCTCCTGCACCCCACGATACTTCGGTCCAAACTTGCTCAACACGGG-AAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tgtccctcgtgcacctggttaatgtcctctttctttttcct---TTTAAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCCACGATACTTCGGTCCAAACTTGCTCAACACGGGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGT-GGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt catccaatttacttaatatacttccttattgagactccttctgcttccaggtGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTCGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATT-TTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCAtgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGT-GGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAt catccaatttacttaatatacttccttattgagactccttctgcttccaggtGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTCGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTTT-TAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCAtgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTCGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTTTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGT-GGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCA---ACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTCGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATT-TTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGT-GGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTCGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATT-TTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTCGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTTTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTCGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTTTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTCGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTTTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGATGGCTAT-GAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctcatgcctaacttaaagagttagtacatttctgttttccacagGTTGTA---GGTGGATATCGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACACTCTTCT-GGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCAgtagagacagggaatagcctgtccttagaatctggctcaaccttagacct Alignment from CESAR GTTGTAGAAGATGGCTAT-GAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctcatgcctaacttaaagagttagtacatttctgttttccacagGTTGTA---GGTGGATATCGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACACTCTTC-TGGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCAgtagagacagggaatagcctgtccttagaatctggctcaaccttagacct Alignment from Spaln_aa2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTG---ACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctcatgcctaacttaaagagttagtacatttctgttttccacagGTTGTA---GGTGGATATCGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACACTCTTCTGGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCAgtagagacagggaatagcctgtccttagaatctggctcaaccttagacct Alignment from Spaln_nt2Genome GTTGTAGAAGATGGCTAT-GAGTTCTTTGCCAAGAG---ACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctcatgcctaacttaaagagttagtacatttctgttttccacagGTTGT---AGGTGGATATCGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACACTCTTCT-GGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCAgtagagacagggaatagcctgtccttagaatctggctcaaccttagacct Alignment from Pairagon GTTGTAGAAGATGGCTAT-GAGTTCTTTGC---CAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCC---------------------------------------------------- catggtctcatgcctaacttaaagagttagtacatttctgttttccacagGTTGT---AGGTGGATATCGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACACTCTTCT-GGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCAGTAGAGACAGGGAATAGCCTGTCCTTAGAATCTGGCTCAACCTTAGACCT Alignment from Exonerate_protein2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCCTTCC catggtctcatgcctaacttaaagagttagtacatttctgttttccacagGTTGTAGGTGGATATCGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACACTCTTCTGGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGctttcccagtagagacagggaatagcctgtccttagaatctggctcaaccttagacct Alignment from Exonerate_coding2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCCTTCC catggtctcatgcctaacttaaagagttagtacatttctgttttccacagGTTGTAGGTGGATATCGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACACTCTTCTGGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGctttcccagtagagacagggaatagcctgtccttagaatctggctcaaccttagacct Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTG---ACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctcatgcctaacttaaagagttagtacatttctgttttccacagGTTGTA---GGTGGATATCGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACACTCTTCTGGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCAgtagagacagggaatagcctgtccttagaatctggctcaaccttagacct #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGC-ACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGC-ACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCcATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCA-CAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGC-ATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGC-ACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTGCCAG-CATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGC-ACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCT-CTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggcttaagtatctgtacgaatttttcatcttgtttttctcttctctttagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCCGGAAAGCCAAGGGAGCACAAGTAGTGGCTTGTCTAAGTG-TAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtaggaaatctctgcagctaattgtgaaggtctagggccaggtaggaact Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTG-AAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggcttaagtatctgtacgaatttttcatcttgtttttctcttctctttagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCCGGAAAGCCAAGGGAGCACAAGTAGTGGCTTGTCTAAGTG-TAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtaggaaatctctgcagctaattgtgaaggtctagggccaggtaggaact Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTG-AAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggcttaagtatctgtacgaatttttcatcttgtttttctcttctctttagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCCGgAAAGCCAAGGGAGCACAAGTAGTGGCTTGTCTAAGTGT-AATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtaggaaatctctgcagctaattgtgaaggtctagggccaggtaggaact Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGA-AGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggcttaagtatctgtacgaatttttcatcttgtttttctcttctctttagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCCGGAAAGCCAAGGGAGCACAAGTAGTGGCTTGTCTAAGTG-TAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtaggaaatctctgcagctaattgtgaaggtctagggccaggtaggaact Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCT-GAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggcttaagtatctgtacgaatttttcatcttgtttttctcttctctttagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCCGGAAAGCCAAGGGAGCACAAGTAGTGGCTTGTCTAAGTG-TAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtaggaaatctctgcagctaattgtgaaggtctagggccaggtaggaact Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggcttaagtatctgtacgaatttttcatcttgtttttctcttctctttagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCCGGAAAGCCAAGGGAGCACAAGTAGTGGCTTGTCTAAGTGTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtaggaaatctctgcagctaattgtgaaggtctagggccaggtaggaact Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggcttaagtatctgtacgaatttttcatcttgtttttctcttctctttagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCCGGAAAGCCAAGGGAGCACAAGTAGTGGCTTGTCTAAGTGTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtaggaaatctctgcagctaattgtgaaggtctagggccaggtaggaact Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ggcttaagtatctgtacgaatttttcatcttgtttttctcttctctttagGCCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAGCTCCGGAAAGCCAAGGGAGCACAAGTAGTGGCTTGTCTAAGTGTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtaggaaatctctgcagctaattgtgaaggtctagggccaggtaggaact #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAG-AATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGCAATGGCACAGATCCTATCAACAACCAGCCTC-CTCAGAGGGGCAGCTCATTGATATTAAAggtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAG-AATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGCAATGGCACAGATCCTATCAACAACCAGCCT-CCTCAGAGGGGCAGCTCATTGATATTAAAggtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAG-AATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGcAATGGCACAGATCCTATCAACAACCAGCCTCC-TCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAG-AATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGCAATGGCACAGATCCTATCAACAACCAGCCTC-CTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAG-AATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGCAATGGCACAGATCCTATCAACAACCAGCCTC-CTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Exonerate_protein2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGCAATGGCACAGATCCTATCAACAACCAGCCTCCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Exonerate_coding2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGCAATGGCACAGATCCTATCAACAACCAGCCTCCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG cggtatactccctatgtgctgtgtctgttaatta---------------GTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGCAATGGCACAGATCCTATCAACAACCAGCCTCCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAG-CCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagtgGCACACCCAATTCGACCCAAGCCCTCCCTCTGCTACCAGTATTCCAGCCA-TCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttcccccctgcctcttcccagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAG-CCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagtgGCACACCCAATTCGACCCAAGCCCTCCCTCTGCTACCAGTATTCCAGCCA-TCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCCTCCCTCTGCTACCAGTATTCCAGCCATCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttcccccctgcctcttcccagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCC-TCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCCTCCCTCTGCTACCAGTATTCCAGCCA-TCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttcccccctgcctcttcccagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAG-CCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCCTCCCTCTGCTACCAGTATTCCAGCCA-TCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttcccccctgcctcttcccagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCCTCCCTCTGCTACCAGTATTCCAGCCATCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttcccccctgcctcttcccagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCCTCCCTCTGCTACCAGTATTCCAGCCATCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttcccccctgcctcttcccagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCCTCCCTCTGCTACCAGTATTCCAGCCATCTGAAGGCCTTGCAAGATGAGTGGGTAAGGCCAATTTTCCCCCCTGCCTCTTCCCAGGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAG-CAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCCAACTGCAGACAACCCGCCAGGAACTGTGCCATG-TCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtatgtcacatttcattgtagagtccctatgtgcctactactctgccctc Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAG-CAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaaggccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCCAACTGCAGACAACCCGCCAGGAACTGTGCCAT-GTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtatgtcacatttcattgtagagtccctatatcctcctcccgctttcccc Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCCAACTGCAGACAACCCGCCAGGAACTGTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatgtgcctactactctgccctc Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAG-CAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCCAACTGCAGACAACCCGCCAGGAACTGTGCCATG-TCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatgtgcctactactctgccctc Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAG-CAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCCAACTGCAGACAACCCGCCAGGAACTGTGCCATG-TCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatgtgcctactactctgccctc Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCCAACTGCAGACAACCCGCCAGGAACTGTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatgtgcctactactctgccctc Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCA---ACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAG--CCAACTGCAGACAACCCGCCAGGAACTGTGCCATGT-CTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatgtgcctactactctgccctc Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGGTGAGTCCAATTTTGCTTTTGGTTGCTGTGCAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCCAACTGCAGACAACCCGCCAGGAACTGTGCCATGTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatgtgcctactactctgccctc #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aacccacatttcattgtagagtccctatatcctcctcccgctttccccagccCTGGCCACCCTAAAACCCACAAGCTGGCCTTATCGTACCTCAAGCTGTGCCAAGCT-ACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from CESAR ctCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG atgtcacatttcattgtagagtccctatatcctcctcccgctttccccagccCTGGCCACCCTAAAACCCACAAGCTGGCCTTATCGTACCTCAAGCTGTGCCAAGC-TACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCC aacccacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAAcCCACAAGCTGGCCTTATCGTACCTCAAGCTGTGCCAAGCTACCACCCAgtgtagtggtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACC-ACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aacccacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCCACAAGCTGGCCTTATCGTACCTCAAGCTGTGCCAAGCT-ACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Pairagon CTCTGGCTACTCTGAAA-CCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aacccacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCCACAAGCTGGCCTTATCGTACCTCAAGCTGTGCCAAGCT-ACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aacccacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCCACAAGCTGGCCTTATCGTACCTCAAGCTGTGCCAAGCTACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aacccacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCCACAAGCTGGCCTTATCGTACCTCAAGCTGTGCCAAGCTACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from GeneWise CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aacccacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCCACAAGCTGGCCTTATCGTACCTCAAGCTGTGCCAAGCTACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACA-TAACAAGATTCTCACTggtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from CESAR GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGAC-ATAACAAGATTCTCACTggtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCT-GGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATT---CTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCcGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACATAACAAGATTCTCACTGGTCAgtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCT-GGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACA-TAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Pairagon GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACA-TAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATT---CTC aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACATAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATT---CTC aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACATAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from GeneWise GGTCTACACAGTGCTAGC-ATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAG------ATTCTCA aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCCGGGATTCTTGCTCTCGACCTGTGTCCCTCAGACATAACAAGATTCTCACTGGTCAgtgtaggcctgacttaagaaataataatgaaccatggaccctgcat #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTACGCGATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGT-CTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from CESAR GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTACGCGATCTTCCCT------GCTGGGCCTATCACCAGCATTGTG-TCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTACGCGATCTTCCCTGCTGGGCCTATCACCAGCATTGTGTC------TCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Spaln_nt2Genome GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTACGCGATCTTCCCTG------CTGGGCCTATCACCAGCATTG-TGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Pairagon GAGCGTACCAATGTG-GCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTACGCGATCTTCCCTG------CTGGGCCTATCACCAGCATTGTG-TCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTACGCGATCTTCCC------TGCTGGGCCTATCACCAGCATTGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTACGCGATCTT-----CCCTGCTGGGCCTATCACCAGCAT-TGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTACGCGATCTTCCC------TGCTGGGCCTATCACCAGCATTGTGTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGG-ACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggagggaaaaaattgagtcacttccgtcattgctccttcttgccatgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGCACACTACAAAACACCATGGTAAATCTTGCCCTGG-GAATGCCTGTGATGAGGCCACTTACCAGgtgagtgatttacataaagctgtgtggggagggtcttgttatgttagcat Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGG-ACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggagggaaaaaattgagtcacttccgtcattgctccttcttgccatgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGCACACTACAAAACACCATGGTAAATCTTGCCCTG-GGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgatttacataaagctgtgtggggagggtcttgttatgttagcat Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggagggaaaaaattgagtcacttccgtcattgctccttcttgccatgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGCACACTACAAAACACCATGGTAAATCTTGCCCTGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgatttacataaagctgtgtggggagggtcttgttatgttagcat Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGG-ACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggagggaaaaaattgagtcacttccgtcattgctccttcttgccatgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGCACACTACAAAACACCATGGTAAATCTTGCCCTGG-GAATGCCTGTGATGAGGCCACTTACCAGgtgagtgatttacataaagctgtgtggggagggtcttgttatgttagcat Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGG-ACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggagggaaaaaattgagtcacttccgtcattgctccttcttgccatgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGCACACTACAAAACACCATGGTAAATCTTGCCCTGG-GAATGCCTGTGATGAGGCCACTTACCAGgtgagtgatttacataaagctgtgtggggagggtcttgttatgttagcat Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggagggaaaaaattgagtcacttccgtcattgctccttcttgccatgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGCACACTACAAAACACCATGGTAAATCTTGCCCTGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgatttacataaagctgtgtggggagggtcttgttatgttagcat Alignment from Exonerate_coding2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggagggaaaaaattgagtcacttccgtcattgctccttcttgccatgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGCACACTACAAAACACCATGGTAAATCTTGCCCTGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgatttacataaagctgtgtggggagggtcttgttatgttagcat Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggagggaaaaaattgagtcacttccgtcattgctccttcttgccatgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGCACACTACAAAACACCATGGTAAATCTTGCCCTGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgatttacataaagctgtgtggggagggtcttgttatgttagcat #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATC-ATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTG-TCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATC-ATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGT-GTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACAT-CATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTG-TCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACAT-CATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTG-TCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAATGACACC-CACCCCTCTTTG---GCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttactataatcccctctgctactaacctctccacattttagGTGGTGATCCAACTCAATGACACACCATCATTCTTTGGCCACCATTCCAGAGCTGATGA-GATTCCAGTAGACCTTGAACAACTAGACTGGGACAAAgtaaggcttgtcaccatcacccccggaagcacctgttccacaacagggtg Alignment from CESAR GTGGCCATCCAGCTCAATGACACC-CACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttactataatcccctctgctactaacctctccacattttagGTGGTGATCCAACTCAATGACACACCATCATTCTTTGGCCACCATTCCAGAGCTGATGA-GATTCCAGTAGACCTTGAACAACTAGACTGGGACAAAgtaaggcttgtcaccatcacccccggaagcacctgttccacaacagggtg Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttactataatcccctctgctactaacctctccacattttagGTGGTGATCCAACTCAATGACACACCATCATTCTTTGGCCACCATTCCAGAGCTGATGAGATTCCAGTAGACCTTGAACAACTAGACTGGGACAAAgtaaggcttgtcaccatcacccccggaagcacctgttccacaacagggtg Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAATGACAC-CCACCCCTCTTTGGCCATC---CCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttactataatcccctctgctactaacctctccacattttagGTGGTGATCCAACTCAATGACACACCATCATTCTTTGGCCACCATTCCAGAGCTGATGA-GATTCCAGTAGACCTTGAACAACTAGACTGGGACAAAgtaaggcttgtcaccatcacccccggaagcacctgttccacaacagggtg Alignment from Pairagon GTGGCCATCCAGCTCAATGACAC-CCACCCCTCTTTGGCCATC---CCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttactataatcccctctgctactaacctctccacattttagGTGGTGATCCAACTCAATGACACACCATCATTCTTTGGCCACCATTCCAGAGCTGATGA-GATTCCAGTAGACCTTGAACAACTAGACTGGGACAAAgtaaggcttgtcaccatcacccccggaagcacctgttccacaacagggtg Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC---ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttactataatcccctctgctactaacctctccacattttagGTGGTGATCCAACTCAATGACACACCATCATTCTTTGGCCACCATTCCAGAGCTGATGAGATTCCAGTAGACCTTGAACAACTAGACTGGGACAAAgtaaggcttgtcaccatcacccccggaagcacctgttccacaacagggtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC------ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG atggagcatttactataatcccctctgctactaacctctccacattttagGTGGTGATCCAACTCAATGACACA---CCATCATTCTTTGGCCACCATTCCAGAGCTGATGAGATTCCAGTAGACCTTGAACAACTAGACTGGGACAAAgtaaggcttgtcaccatcacccccggaagcacctgttccacaacagggtg #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACA-CTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACCTGCTACCCCGTCACTTGCAGATAATTTATG-GATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACA-CTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACCTGCTACCCCGTCACTTGCAGATAATTTAT-GGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACCTGCTACCCCGTCACTTGCAGATAATTTATGGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACA-CTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACCTGCTACCCCGTCACTTGCAGATAATTTATG-GATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACA-CTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACCTGCTACCCCGTCACTTGCAGATAATTTATG-GATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACCTGCTACCCCGTCACTTGCAGATAATTTATGGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACCTGCTACCCCGTCACTTGCAGATAATTTATGGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACCTGCTACCCCGTCACTTGCAGATAATTTATGGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGA-GGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGA-GGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAcGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAG-GAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTG-AGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTG-AGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGG-ACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatcaccctaccccatgtcccacagCTTTCAGCTTTGGTTCGACACTGCTGTAGAGGACAATACACTCACCATTG-GCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtgagctcaggctcaggggggcagtggaggagggatatcagtcttgtgcc Alignment from CESAR CTCTCAGCTCTGGTTCGG-ACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatcaccctaccccatgtcccacagCTTTCAGCTTTGGTTCGACACTGCTGTAGAGGACAATACACTCACCATT-GGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtgagctcaggctcaggggggcagtggaggagggatatcagtcttgtgcc Alignment from Spaln_aa2Genome GCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatcaccctaccccatgtcccacagctttcagCTTTGGTTCGACACTGCTGTAGAGGACAATACACTCACCATTGG-CCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagctcaggctcaggggggcagtggaggagggatatcagtcttgtgcc Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGG-ACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatcaccctaccccatgtcccacagCTTTCAGCTTTGGTTCGACACTGCTGTAGAGGACAATACACTCACCATTG-GCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagctcaggctcaggggggcagtggaggagggatatcagtcttgtgcc Alignment from Pairagon CTCTCAGCTCTGGTTCGG-ACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatcaccctaccccatgtcccacagCTTTCAGCTTTGGTTCGACACTGCTGTAGAGGACAATACACTCACCATTG-GCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagctcaggctcaggggggcagtggaggagggatatcagtcttgtgcc Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatcaccctaccccatgtcccacagCTTTCAGCTTTGGTTCGACACTGCTGTAGAGGACAATACACTCACCATTGGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagctcaggctcaggggggcagtggaggagggatatcagtcttgtgcc Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatcaccctaccccatgtcccacagCTTTCAGCTTTGGTTCGACACTGCTGTAGAGGACAATACACTCACCATTGGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagctcaggctcaggggggcagtggaggagggatatcagtcttgtgcc Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatcaccctaccccatgtcccacagCTTTCAGCTTTGGTTCGACACTGCTGTAGAGGACAATACACTCACCATTGGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagctcaggctcaggggggcagtggaggagggatatcagtcttgtgcc #### Rasgrp2_ID1703_2 --> 2 - 2 Original Alignment atGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagatGATTCTGGAAAGGTGCAACGATTCACAGCTAGTACGTATGTTTCTCATGA-GTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACttgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from CESAR atGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagatGATTCTGGAAAGGTGCAACGATTCACAGCTAGTACGTATGTTTCTCATG-AGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACttgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Spaln_aa2Genome ATGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAAcGATTCACAGCTAGTACGTATGTTTCTCATGAG-TATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Spaln_nt2Genome ATGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTACGTATGTTTCTCATGA-GTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Pairagon ATGACTCCGGAAAGGTGCGA-GATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTACGTATGTTTCTCATGA-GTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Exonerate_protein2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTACGTATGTTTCTCATGAGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from Exonerate_coding2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTACGTATGTTTCTCATGAGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa Alignment from GeneWise ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctatgtccccagaccaaagctccaagatcttttgtatctcttcctctagATGATTCTGGAAAGGTGCAACGATTCACAGCTAGTACGTATGTTTCTCATGAGTATCCATGGTACATACCTTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtagcgttggtggtccataacattagaaaacgttgagtgtctggtgtcaa #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTC-AGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCC-CTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTC-AGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACC-CCTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTC-AGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCcAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCC-TTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCT-CAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTAC-CCCTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCT-CAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTAC-CCCTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCCTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCCTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCCTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGC-ACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTCATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGT-GACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from CESAR CCAACCAGCCCCACCAGCTGC-ACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTCATGTCACCTCCTCGACCCCCAGTGTTAGAAGAG-TGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTCATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTG-CACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTCATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGT-GACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Pairagon CCAACCAGCCCCACCAGCTG-CACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTCATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGT-GACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTCATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTCATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTCATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGACATCAGCTGCTAAACCTAATCTTGATCAGGCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGG-TATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGCTACACTATTGCA---AAGGACCCCAAGGGGC-CTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGaggtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from CESAR TTCTCTGGGCTCTGG-TATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGCTACACTATTGCA---AAGGACCCCAAGGGG-CCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGaggtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGCTACACTATTGC---AAAGGACCCCAAGGGGCCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGG-TATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGCTACACTATTGC---AAAGGACCCCAAGGGGC-CTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Pairagon TTCTCTGGGCTCTGG-TATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGCTACACTATTGC---AAAGGACCCCAAGGGGC-CTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGCTACACTATTGC---AAAGGACCCCAAGGGGCCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from Exonerate_coding2genome CGTTTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaAAGTTTTCAGGGCTCTGGCTACACTATTGC---AAAGGACCCCAAGGGGCCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagactttttctttcatcttttaaaagTTTTCAGGGCTCTGGCTACACTATTGCAAA---GGACCCCAAGGGGCCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtaagagaccctgattggaggtggtagataggaaagggaaagagtaatgt #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTCGTGCTTCTGTCAGCCCTGGGAGGTGGTA-CACAGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTCGTGCTTCTGTCAGCCCTGGGAGGTGGT-ACACAGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTCGTGCTTCTGTCAGCCCTGGGAGGTGGTACACAGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTCGTGCTTCTGTCAGCCCTGGGAGGTGGTA-CACAGAGCATGACT------TGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTCGTGCTTCTGTCAGCCCTGGGAGGTGGTA-CACAGAGCATGACT------TGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTCGTGCTTCTGTCAGCCCTGGGAGGTGGTACACAGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Exonerate_coding2genome atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagggcagtctccgaggtgaaatggcatgggtgtgggcacctcgtgcttctgtcagccctgggaggtggtacacagagcatgacttgagcagctttcaagttaaagataactttgacaaggctcatgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTCGTGCTTCTGTCAGCCCTGGGAGGTGGTACACAGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag #### Rce1_ID576_6 --> 2 - 1 Original Alignment CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtaccactacccactcttgctattttccagccCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGG-GAGCATCTTTGTGTCTACAggtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from CESAR CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtgagcctacccactcttgctattttccagccCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGG-GAGCATCTTTGTGTCTACAggtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Spaln_aa2Genome CCCACTCTTTTTTGGA GTCGCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGA---AGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGgttggtaccactacccactcttgctattttccagCCCATT---TTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGAGCATCTTTGTGTCTACAGGTGAgtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Spaln_nt2Genome CTCTTTTTTGGAGTCG CCCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTCTTTTTTGG----GgttggtaccactacccactcttgctattttccagCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGG-AGCATCTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Pairagon CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATT-ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtaccactacccactcttgctattttccagCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGG-AGCATCTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Exonerate_protein2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtaccactacccactcttgctattttccagCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGAGCATCTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from Exonerate_coding2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtaccactacccactcttgctattttccagCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGAGCATCTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg Alignment from GeneWise CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGGTACCACTACCCACTCTTGCTATTTTCCAGCCCATTTTCAGCACATTCATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGAGCATCTTTGTGTCTACAGgtgagtgggaaatatactgagttgactaaggggacaaagggtaggatgtg #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAAC-CAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT aatagatatggaagtcagggctagcttacactagccttgcatatcttcagccCCTTGTTCGTGGGCTCGATGCCTCACAGACATGCGCTGGCTAAGAAACCAAAGTTATTGCACCACTGACGGGGGAGCTGGTGTTCCGGG-ATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTggtgagtcttgacctttgcctcttcctcaagccCATTTTCAGCACATTATA Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAA-GTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT aatagatatggaagtcagggctagcttacactagccttgcatatcttcagccCCTTGTTCGTGGGCTCGATGCCTCACAGACATGCGCTGGCTAAGAAACCAAAGTTATTGCACCACTGACGGGGGAGCTGGTGTTCCGG-GATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTggtgagcctacccactcttgctattttccagccCATTTTCAGCACATTATA Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT aatagatatggaagtcagggctagcttacactagccttgcatatcttcagCCCCTTGTTCGTGGGCTCGATGCCTCACAGACATGCGCTGGCTAAGAAACCAAAGTTATTGCACCACTGACGGGGGAGCTGGTGTTCCGGGATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGGTGAGTCTTGACCTTTGCCTCTTCCTCAAGCCCATTTTCAGCACATTATA Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCA-AGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcttacactagccttgcatatcttcagCCCCTTGTTCGTGGGCTCGATGCCTCACAGACATGCGCTGGCTAAGAAACCAAAGTTATTGCACCACTGACGGGGGAGCTGGTGTTCCGGG-ATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGG----GgttggtgagtcttgacctttgcctcttcctcaagCCCATTTTCAGCACATTATA Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACC-AAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcttacactagccttgcatatcttcagCCCCTTGTTCGTGGGCTCGATGCCTCACAGACATGCGCTGGCTAAGAAACCAAAGTTATTGCACCACTGACGGGGGAGCTGGTGTTCCGGGA-TGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtcttgacctttgcctcttcctcaagCCCATTTTCAGCACATTATA Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcttacactagccttgcatatcttcagCCCCTTGTTCGTGGGCTCGATGCCTCACAGACATGCGCTGGCTAAGAAACCAAAGTTATTGCACCACTGACGGGGGAGCTGGTGTTCCGGGATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtcttgacctttgcctcttcctcaagCCCATTTTCAGCACATTATA Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGT---TATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcttacactagccttgcatatcttcagCCCCTTGTTCGTGGGCTCGATGCCTCACAGACATGCGCTGGCTAAGAAACCAA--AGTTATTGCACCACTGACGGGGGAGCTGGTGTTCCGGGA-TGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtcttgacctttgcctcttcctcaagCCCATTTTCAGCACATTATA Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcttacactagccttgcatatcttcagCCCCTTGTTCGTGGGCTCGATGCCTCACAGACATGCGCTGGCTAAGAAACCAAAGTTATTGCACCACTGACGGGGGAGCTGGTGTTCCGGGATGCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtcttgacctttgcctcttcctcaagCCCATTTTCAGCACATTATA #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCT-GGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagaaCCAGCCCAGGCATCTCGGCCCTTATGTGGACATCATCAAACAACCAAAGC-ACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from CESAR agCCAGCCCAGGCTTCT-GGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagaaCCAGCCCAGGCATCTCGGCCCTTATGTGGACATCATCAAACAACCAAAGCACA-GGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagAACCAGCCCAGGCATCTCGGCCCTTATGTGGACATCATCAAACAACCAAAGCACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCC-TTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagAACCAGCCCAGGCATCTCGGCCCTTATGTGGACATCATCAAACAACCAAAGC-ACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Pairagon AGCCAGCCCAGGCTTCTGGG-CCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagAACCAGCCCAGGCATCTCGGCCCTTATGTGGACATCATCAAACAACCAAAGCACAGGGCCGT----TTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtagAACCAGCCCAGGCATCTCGGCCCTTATGTGGACATCATCAAACAACCAAAGCACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from Exonerate_coding2genome GAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaacacctgatggctcactgtatcacccccctttctgctttgctttgtaGAACCAGCCCAGGCATCTCGGCCCTTATGTGGACATCATCAAACAACCAAAGCACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG cacctgatggctcactgtaTCACCCCCCTTTCTGCTTTGCTTTGTA---GAACCAGCCCAGGCATCTCGGCCCTTATGTGGACATCATCAAACAACCAAAGCACAGGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCAGAAGGTGGTATCCCCGGTGAGAGAAGCACAGATACCACAAAGACACATCCCACTATCAAGgtgcgcaacaagggccttgcatggctaccaagcaaacatactcccaggtc #### Rela_ID1129_6 --> 2 - 1 Original Alignment ttCCTATAGAGGAGCAGCGCGGGGACTATGAC-TTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagttCCCATGGAGGAGCAGCATGGGGAATATGACCTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAG-GCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACcgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from CESAR ttCCTATAGAGGAGCAGCGCGGGGACTATGAC-TTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagttCCCATGGAGGAGCAGCATGGGGAATATGACCTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACA-GGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACcgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Spaln_aa2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACCTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Spaln_nt2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGAC-TTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACCTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAG-GCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Pairagon TTCCTATAGAGGAGCAGCGCGGGGACTATGA-CTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACCTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAG-GCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Exonerate_protein2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACCTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from Exonerate_coding2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACCTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc Alignment from GeneWise TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttccagccttactctgttctttagTTCCCATGGAGGAGCAGCATGGGGAATATGACCTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCGCATCCGATTTTTGATAACCgtacaaggcagattcagatagtcacaaagtctttcttctcggccccattc #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAAC-CGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCC-ACTGTGTGACAGGGTCCAAAAGggtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAAC-CGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTC-CACTGTGTGACAGGGTCCAAAAGggtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAAC-CGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACcCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCA-CTGTGTGACAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCG-GAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTC-CACTGTGTGACAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAA-CCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTC-CACTGTGTGACAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAAC-CGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTC--TTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCA---CTGTGTGACAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAAC-CGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTC--TTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCA---CTGTGTGACAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAAC-CGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcccccatgctacccttcccctttttcccttgtagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCCGGAACTCTGGGAGCTGTCTTGGAGGGGAAGAGATATTCCA-CTGTGTGACAGGGTCCAAAAGGgtacctagtgaactacacataaagagggggggtggaagtggggttcaagg #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGC-TCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tggggaccccaatgagctaaacagatagctgttccctgactacgttgcaggaATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAAC-CATC------TATTGTCGTACCaggtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from CESAR gtGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tggggaccccaatgagctaaacagatagctgttccctgactacgttgcaggaATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAA-CCATC------TATTGTCGTACCaggtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Spaln_aa2Genome GTGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGgTCCTCAGAACTCATGTTCCAGGACCTTGTACAACCATC-------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGC-TCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAAC-CATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Pairagon GTGTCTCTTTGGAGG-GCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAAC-CATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggaccccaatgagctaaacagatagctgttccctgactacgttgcagGAATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAACCATC------TATTGTCGTACCAGgtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from Exonerate_coding2genome tggggaccccaatgagctaaacagatagctgttccctgactacgttgcaggaatctctttggaggtcctcagaactcatgttccaggaccttgtacaaccatctattgtcgtaccaggtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac Alignment from GeneWise tggggaccccaatgagctaaacagatagctgttccctgactacgttgcaggaatctctttggaggtcctcagaactcatgttccaggaccttgtacaaccatctattgtcgtaccaggtgagtctgtctgtgagcacctgctgagctttcaagccaactcactgcac #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCA-GAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg actaaaatcaactatgagcacccctccctcccactctttctctctcccagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGCGAAGAGGAAGGCTCTTCAGGC---CCTACAA-CTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTggtgagtcacttcaagggtatggtttcacacaaactcccctgaacatcttt Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCA-GAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg actaaaatcaactatgagcacccctccctcccactctttctctctcccagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGCGAAGAGGAAGGCTCTTCAGGC---CCTACAA-CTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTggtgagtcacttcaagggtatggtttcacacaaactcccctgactctttgt Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCA-GAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGcGAAGAGGAAGGCTCTTCAGGCCCTACAACTCA----CCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgaacatcttt Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCA-GAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGCGAAGAGGAAGGCTCTTCAG---GCCCTACAA-CTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgaacatcttt Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCA-GAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGCGAAGAGGAAGGCTCTTCAG---GCCCTACAA-CTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgaacatcttt Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCG---CGAAGAGGAAGGCTCTTCAGGCCCTACAACTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgaacatcttt Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCG---CGAAGAGGAAGGCTCTTCAGGCCCTACAACTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgaacatcttt Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG actaaaatcaactatgagcacccctccctcccactctttctctctcccagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCCGAAGCCTCACCTATCCCTCAGCTGAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTTCCAGGGACATCTTCGAGCCAAACTGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCGCGAAGA---GGAAGGCTCTTCAGGCCCTACAACTCACCACGCCTAAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCTGCCACAACACTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCTGAGGAGCTACTGCTGCCAGAGTGGCTTGgtgagtcacttcaagggtatggtttcacacaaactcccctgaacatcttt #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCC-CGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcacacaaactcccctgactctttgtaactctttgaaaagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGATGGTTCCCTTGGTCGTCTAGCTGAGGGCTTTCTCCTGGCCCCGGACCCAGGGGCCTGGGGCCTTTGGGC-CCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTGTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAAGCAggtatgtgacaaccatcttctcctagagtatgagtcatgtaccatacctct Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCC-CGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcacacaaactcccctgactctttgtaactctttgaaaagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGATGGTTCCCTTGGTCGTCTAGCTGAGGGCTTTCTCCTGGCCCCGGACCCAGGGGCCTGGGGCCTTTG-GGCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTGTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAAGCAggtatgtgacaaccatcttctcctagagtatgagtcatgtaccatacctct Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcacacaaactcccctgactctttgtaactctttgaaaagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGATGGTTCCCTTGGTCGTCTAGCTGAGGGCTTTCTCCTGGCCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTGTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAAGCAGgtatgtgacaaccatcttctcctagagtatgagtcatgtaccatacctct Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCC-CGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcacacaaactcccctgactctttgtaactctttgaaaagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGATGGTTCCCTTGGTCGTCTAGCTGAGGGCTTTCTCCTGGCCCCGGACCCAGGGGCCTGGGGCCTTTGGG-CCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTGTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAAGCAGgtatgtgacaaccatcttctcctagagtatgagtcatgtaccatacctct Alignment from Pairagon ------------------------------------------------GGAATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGG-CCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG GGGTATGGTTTCACACAAACTCCCCTGACTCTTTGTAACTCTTTGAAAAGAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGATGGTTCCCTTGGTCGTCTAGCTGAGGGCTTTCTCCTGGCCCCGGACCCAGGGGCCTGGGGCCTTTGGG-CCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTGTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAAGCAGgtatgtgacaaccatcttctcctagagtatgagtcatgtaccatacctct Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcacacaaactcccctgactctttgtaactctttgaaaagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGATGGTTCCCTTGGTCGTCTAGCTGAGGGCTTTCTCCTGGCCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTGTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAAGCAGgtatgtgacaaccatcttctcctagagtatgagtcatgtaccatacctct Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcacacaaactcccctgactctttgtaactctttgaaaagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGATGGTTCCCTTGGTCGTCTAGCTGAGGGCTTTCTCCTGGCCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTGTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAAGCAGgtatgtgacaaccatcttctcctagagtatgagtcatgtaccatacctct Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcacacaaactcccctgactctttgtaactctttgaaaagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGATGGTTCCCTTGGTCGTCTAGCTGAGGGCTTTCTCCTGGCCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTGTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAAGCAGgtatgtgacaaccatcttctcctagagtatgagtcatgtaccatacctct #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAG-GTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagctccatgggctgcacttaatctcttttctttgcccaggaTTACAGGCACCATTTCATGGTCGTGGTCTGTGGGGTGAGGAGCGTAGCTGTGCCACCAGAGTTTGCGGGATTTG-GATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtgagaatggagagatagtacaggtgagagcattttgcatgagggtgtct Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAG-GTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagctccatgggctgcacttaatctcttttctttgcccaggaTTACAGGCACCATTTCATGGTCGTGGTCTGTGGGGTGAGGAGCGTAGCTGTGCCACCAGAGTTTGCGGGATTT-GGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtgagaatggagagatagtacaggtgagagcattttgcatgagggtgtct Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagctccatgggctgcacttaatctcttttctttgcccagGATTACAGGCACCATTTCATGGTCGTGGTCTGTGGGGTGAGGAGCGTAGCTGTGCCACCAGAGTTTGCGGGATTTGGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtgagaatggagagatagtacaggtgagagcattttgcatgagggtgtct Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAG-GTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGA-GGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGA tgtaggtcttgagctccatgggctgcacttaatctcttttctttgcccagGATTACAGGCACCATTTCATGGTCGTGGTCTGTGGGGTGAGGAGCGTAGCTGTGCCACCAGAGTTTGCGGGATTTG-GATGGTGACAGAGGACGATGCCCAAGAGCCATTAGAGAGA---GACTT----GGTGA---GAATGGAGAGATAGTAC-AGGTG--AGAGCATTTTGCATGAGG Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAG-GTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagctccatgggctgcacttaatctcttttctttgcccagGATTACAGGCACCATTTCATGGTCGTGGTCTGTGGGGTGAGGAGCGTAGCTGTGCCACCAGAGTTTGCGGGATTTG-GATGGTGACAGA------------------------------------------------------------GGACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtgagaatggagagatagtacaggtgagagcattttgcatgagggtgtct Alignment from Exonerate_protein2genome tgtaggtcttgagctccatgggctgcacttaatctcttttctttgcccaggattacaggcaccatttcatggtcgtggtctgtggggtgaggagcgtagctgtgccaccagagtttgcgggatttggatggtgacagaggacgatgcccaagagccattagagagagacttggtgagaatggagagatagtacaggtgagagcattttgcatgagggtgtct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tgtaggtcttgagctccatgggctgcacttaatctcttttctttgcccagGATTACAGGCACCATTTCATGGTCGTGGTCTGTGGGGTGAGGAGCGTAGCTGTGCCACCAGAGTTTGCGGGATTTGGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCATTAGAGAGAGACTTGgtgagaatggagagatagtacaggtgagagcattttgcatgagggtgtct #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGC-CATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATG-CAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGC-CATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATG-CAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Spaln_nt2Genome CGCTGGAGCGGGA CTTCGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCC-ATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ATTTTGCATGAGGgtgtctaatgtacaaaactgtggtcttgtcaccccag----GACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATG-CAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAG-CCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATG-CAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Exonerate_protein2genome attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccaggaccgccttatcggggccactggaagcttcagcccatttcaccttgtggggtctagaaacagtcccaggtccagatgcaaagtgcatagggccctaggatggcccaccctagcagcagcagtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Exonerate_coding2genome attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccaggaccgccttatcggggccactggaagcttcagcccatttcaccttgtggggtctagaaacagtcccaggtccagatgcaaagtgcatagggccctaggatggcccaccctagcagcagcagtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCC------CAGGTCCCTGAGGAC attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCAGATGCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTGAGCAGACTGAGGAGCTTTACCTCTGATggctgacaattcctctatcc #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCC-TATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACC-CTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGAC-CCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAAC-CCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCCTATGCTCATCCACT---TCTTCCTCAGCAGCCAAACCTAAACCCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCC-TATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCACC------TTGCCTGCAAAGCCAACTCTCAGACCCCCTATGCTCATCCACTTCT---TCCTCAGCAGCCAAACCTAAACC-CTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGA-CCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCCTATGCTCATCCACTTCT---TCCTCAGCAGCCAAACCTAAACC-CTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGAC-CCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAAC--CTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCC---TGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCCTATGC--TCATCCACTTCTTCCTCAGCAGCCAAACCTAAACCC-TGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtgcttctacactacatctcattcctctctgttgctgccttcacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTCCCCTTCTCCTGTTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCCTATGCTCATCCACT---TCTTCCTCAGCAGCCAAACCTAAACCCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGAACATTGGGGACTATTCTGGTGATAACTTTATTGTTGCAGgtaagccatcaaggtccctaacttccatactctgttttgagacctaaaac #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGCGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCAC-ATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGCGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCA-CATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGCGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGCGGTTTTTCATTCCAACCCAAGCTGCGCTCT-CCACATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGCGGTTTTTCATTCCAACCCAAGCTGCGCTCT-CCACATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGCGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGCGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGCGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGC-CATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagcTTCTACCTGGCAGAGATCACACTGGCACTAGGCCCATCTCCATTTCCATGGCATCATCTACCGTG-CCGCAAGCCTGAAAACATCATGCTCACCAGTCAGggtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGC-CATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagcTTCTACCTGGCAGAGATCACACTGGCACTAGGCCCATCTCCATTTCCATGGCATCATCTACCGTGCC-GCAAGCCTGAAAACATCATGCTCACCAGTCAGggtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCCATCTCCATTTCCATGGCATCATCTACCGTGCCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCC-ATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCCATCTCCATTTCCATGGCATCATCTACCGTG-CCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGG-CCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCCATCTCCATTTCCATGGCATCATCTACCGTG-CCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGC-CATCTCCATTCCCACGGCATCATCTACCGGGACCTC--AAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCCATCTCCATTTCCATGGCATCATCTACCGT---GCCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGC-CATCTCCATTCCCACGGCATCATCTACCGGGACCTC--AAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCCATCTCCATTTCCATGGCATCATCTACCGT---GCCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCCATCTCCATTTCCATGGCATCATCTACCGTGCCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTG-GATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagaTTGTCTGTTCTGCGATCTGGTTGTGGCTCTGGCTCCTTATT-AGATGAAGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from CESAR aTTGTCTGTCCTG-GATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagaTTGTCTGTTCTGCGATCTGGTTGTGGCTCTGGCTCCTTAT-TAGATGAAGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Spaln_aa2Genome ATTGTCTGTCCTG-GATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGcGATCTGGTTGTGGCTCTGGCTCCTTATTA-GATGAAGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Spaln_nt2Genome ATTGTCTGTCCTG-GATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGCGATCTGGTTGTGGCTCTGGCTCCTTATTA-GATGAAGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Pairagon ATTGTCTGTCCTG-GATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGCGATCTGGTTGTGGCTCTGGCTCCTTA-TTAGATGAAGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGCGATCTGGTTGTGGCTCTGGCTCCTTATTAGATGAAGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Exonerate_coding2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGCGATCTGGTTGTGGCTCTGGCTCCTTATTAGATGAAGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGCGATCTGGTTGTGGCTCTGGCTCCTTATTAGATGAAGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCC-CTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGA-GGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCC-CTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGA-GGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCC-TGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAG-AGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACG-CCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAG-AGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAG-CTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGA-TGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from CESAR GCATTCCGGCAG-CTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAG-ATGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Spaln_aa2Genome GCATTCCGGCAG-CTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAAcCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGAT-GAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Spaln_nt2Genome GCATTCCGGCAGC-TGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGA-TGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Pairagon GCATTCCGGCAG-CTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGA-TGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Exonerate_protein2genome GCATTCCGGCAG-CTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAG--ACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGAT---GAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from Exonerate_coding2genome GCATTCCGGCAG-CTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAG--ACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGAT---GAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata Alignment from GeneWise GCATTCCGGCAG-CTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cgtagaccaggatgcattctgccacttggtctctcttccctttaccccagGCATTCCGGCAACCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGAT-GAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtgacccttggaagctaggtggccagtctccattcctgtgaaatataata #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat gctccaagaattcaacctgagcccaggacctaactcggatccctctccaggaCTGCTAGAAACCACACGTACAAAAGGTTGCCTGGGTGGAGGCTCCCA-TAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from CESAR gaCTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat gctccaagaattcaacctgagcccaggacctaactcggatccctctccaggaCTGCTAGAAACCACACGTACAAAAGGTTGCCTGGGTGGAGGCTCCC-ATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACACGTACAAAAGGTTGCCTGGGTGGAGGCTCCCATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACACGTACAAAAGGTTGCCTGGGTGGAGGCTCCC-ATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Pairagon GACTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACACGTACAAAAGGTTGCCTGGGTGGAGGCTCCC-ATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACACGTACAAAAGGTTGCCTGGGTGGAGGCTCCCATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACACGTACAAAAGGTTGCCTGGGTGGAGGCTCCCATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACACGTACAAAAGGTTGCCTGGGTGGAGGCTCCCATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggcagggggatatggggctaccttctcgctgactgttctcgccatgcagTTCTCTGCTTCTTCTACGACTATCCTGGATGAGCGAGCCCATTGTGAACCGAGGGCTAGCTGCTGCCC-GCTCCTATGTCAGAACAGAggtgggtgtttgggagggctgctatcgcagttgtatatttcatccatcaca Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggcagggggatatggggctaccttctcgctgactgttctcgccatgcagTTCTCTGCTTCTTCTACGACTATCCTGGATGAGCGAGCCCATTGTGAACCGAGGGCTAGCTGCTGCC-CGCTCCTATGTCAGAACAGAggtgggtgtttgggagggctgctatcgcagttgtatatttcatccatcaca Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctcgctgactgttctcgccatgcagTTCTCTGCTTCTTCTACGACTATCCTGGATGAGCGAGCCCATTGTGAACCGAGGGCTAGCTGCTGCCCGCTCCTATGTCAGAACAGAGgtgggtgtttgggagggctgctatcgcagttgtatatttcatccatcaca Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctcgctgactgttctcgccatgcagTTCTCTGCTTCTTCTACGACTATCCTGGATGAGCGAGCCCATTGTGAACCGAGGGCTAGCTGCTGCCC-GCTCCTATGTCAGAACAGAGgtgggtgtttgggagggctgctatcgcagttgtatatttcatccatcaca Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctcgctgactgttctcgccatgcagTTCTCTGCTTCTTCTACGACTATCCTGGATGAGCGAGCCCATTGTGAACCGAGGGCTAGCTGCTGCCC-GCTCCTATGTCAGAACAGAGgtgggtgtttgggagggctgctatcgcagttgtatatttcatccatcaca Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctcgctgactgttctcgccatgcagTTCTCTGCTTCTTCTACGACTATCCTGGATGAGCGAGCCCATTGTGAACCGAGGGCTAGCTGCTGCCCGCTCCTATGTCAGAACAGAGgtgggtgtttgggagggctgctatcgcagttgtatatttcatccatcaca Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctcgctgactgttctcgccatgcagTTCTCTGCTTCTTCTACGACTATCCTGGATGAGCGAGCCCATTGTGAACCGAGGGCTAGCTGCTGCCCGCTCCTATGTCAGAACAGAGgtgggtgtttgggagggctgctatcgcagttgtatatttcatccatcaca Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctcgctgactgttctcgccatgcagTTCTCTGCTTCTTCTACGACTATCCTGGATGAGCGAGCCCATTGTGAACCGAGGGCTAGCTGCTGCCCGCTCCTATGTCAGAACAGAGgtgggtgtttgggagggctgctatcgcagttgtatatttcatccatcaca #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCACGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACC-GGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCACGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAAC-CGGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAcGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCG-GATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCACGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACC-GGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCACGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACC-GGATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCA-GATGGGGAAGAGAACATTGGCTGGAGCACCGTCAAC--CTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCACGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCG---GATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATC---AGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAA--TCACGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCG-GATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAA-TCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCACGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCG-GATGATGAGAAGCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAAT-GCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG gttaggttaccctgtgaactgtctataaacataattgtgtttttatatagGTGCTGGAGATTGTGAAGAAATTAGAGTCCCGTCAGCGCGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTATTCAACCGCCACCTCAGAATTTTGCTGTACACTAGGGGAATCTCCCACAT-TGAGTTGGCGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaagcaagcatttcctagcttttattgtaaggctgatgatgcttctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAAT-GCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG gttaggttaccctgtgaactgtctataaacataattgtgtttttatatagGTGCTGGAGATTGTGAAGAAATTAGAGTCCCGTCAGCGCGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTATTCAACCGCCACCTCAGAATTTTGCTGTACACTAGGGGAATCTCCCACA-TTGAGTTGGCGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaagcaagcatttcctagcttttattgtaaggctgatgatgcttctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG gttaggttaccctgtgaactgtctataaacataattgtgtttttatatagGTGCTGGAGATTGTGAAGAAATTAGAGTCCCGTCAGCGCGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTATTCAACCGCCACCTCAGAATTTTGCTGTACACTAGGGGAATCTCCCACATTGAGTTGGCGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaagcaagcatttcctagcttttattgtaaggctgatgatgcttctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAAT-GCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG gttaggttaccctgtgaactgtctataaacataattgtgtttttatatagGTGCTGGAGATTGTGAAGAAATTAGAGTCCCGTCAGCGCGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTATTCAACCGCCACCTCAGAATTTTGCTGTACACTAGGGGA-ATCTCCCACATTGAGTTGGCGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaagcaagcatttcctagcttttattgtaaggctgatgatgcttctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAA-TGCCACTTCTGAATTCTGCCGCACGCTGGGGGA------------GATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG gttaggttaccctgtgaactgtctataaacataattgtgtttttatatagGTGCTGGAGATTGTGAAGAAATTAGAGTCCCGTCAGCGCGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTATTCAACCGCCACCTCAGAATTTTGCTGTACACTAGGGGAATCTCCCACATTGA-------------GTTGGCGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaagcaagcatttcctagcttttattgtaaggctgatgatgcttctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAAT-GCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTAC--GGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG gttaggttaccctgtgaactgtctataaacataattgtgtttttatatagGTGCTGGAGATTGTGAAGAAATTAGAGTCCCGTCAGCGCGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTATTCAACCGCCACCTCAGAATTTTGCTGTACACTAGGGGAATCTCCCACATTGAG---TTGGCGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaagcaagcatttcctagcttttattgtaaggctgatgatgcttctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAAT-GCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTAC--GGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG gttaggttaccctgtgaactgtctataaacataattgtgtttttatatagGTGCTGGAGATTGTGAAGAAATTAGAGTCCCGTCAGCGCGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTATTCAACCGCCACCTCAGAATTTTGCTGTACACTAGGGGAATCTCCCACATTGAG---TTGGCGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaagcaagcatttcctagcttttattgtaaggctgatgatgcttctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG gttaggttaccctgtgaactgtctataaacataattgtgtttttatatagGTGCTGGAGATTGTGAAGAAATTAGAGTCCCGTCAGCGCGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTATTCAACCGCCACCTCAGAATTTTGCTGTACACTAGGGGAATCTCCCACATTGAGTTGGCGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaagcaagcatttcctagcttttattgtaaggctgatgatgcttctag #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAG-CAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG tgcaggcaagggcacttgtgaaggcacaaatgtcttcacctctcttctagaaGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAGCTGGAACTACAAAAGCCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAAC-GCAGCAGCTCAGAGATAGTGGGGAGAAGgtaagtctcagcaggtacattgtcatgaggggactttggcattcttgaga Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAG-CAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG tgcaggcaagggcacttgtgaaggcacaaatgtcttcacctctcttctagaaGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAGCTGGAACTACAAAAGCCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAA-CGCAGCAGCTCAGAGATAGTGGGGAGAAGgtaagtctcagcaggtacattgtcatgaggggactttggcattcttgaga Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAG-CAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG tgcaggcaagggcacttgtgaaggcacaaatgtcttcacctctcttctagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAGCTGGAACTACAAAAGcCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACG-CAGCAGCTCAGAGATAGTGGGGAGAAGgtaagtctcagcaggtacattgtcatgaggggactttggcattcttgaga Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAG-CAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG tgcaggcaagggcacttgtgaaggcacaaatgtcttcacctctcttctagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAGCTGGAACTACAAAAGCCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAAC-GCAGCAGCTCAGAGATAGTGGGGAGAAGgtaagtctcagcaggtacattgtcatgaggggactttggcattcttgaga Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAG-CAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG tgcaggcaagggcacttgtgaaggcacaaatgtcttcacctctcttctagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAGCTGGAACTACAAAAGCCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAAC-GCAGCAGCTCAGAGATAGTGGGGAGAAGgtaagtctcagcaggtacattgtcatgaggggactttggcattcttgaga Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG tgcaggcaagggcacttgtgaaggcacaaatgtcttcacctctcttctagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAGCTGGAACTACAAAAGCCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACGCAGCAGCTCAGAGATAGTGGGGAGAAGgtaagtctcagcaggtacattgtcatgaggggactttggcattcttgaga Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG tgcaggcaagggcacttgtgaaggcacaaatgtcttcacctctcttctagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAGCTGGAACTACAAAAGCCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACGCAGCAGCTCAGAGATAGTGGGGAGAAGgtaagtctcagcaggtacattgtcatgaggggactttggcattcttgaga Alignment from GeneWise -------------------------------------------------GAGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG TGCAGGCAAGGGCACTTGTGAAGGCACAAATGTCTTCACCTCTCTTCTAGAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAGCTGGAACTACAAAAGCCAGCTAGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACGCAGCAGCTCAGAGATAGTGGGGAGAAGgtaagtctcagcaggtacattgtcatgaggggactttggcattcttgaga #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTG-GGAGGAGTTTGAGCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTT-GGGAGGAGTTTGAGCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGGGAGGAGTTTGAGCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTG-GGAGGAGTTTGAGCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTG-GGAGGAGTTTGAGCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGGGAGGAGTTTGAGCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGGGAGGAGTTTGAGCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGGGAGGAGTTTGAGCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagtAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATCGATACTGCAGCGTGGATAGAGAGGAGC------C-CCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagtAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATCGATACTGCAGCGTGGATAGAGAGGAGC-------CCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATcGATACTGCAGCGTGGATAGAGAGGAGCCC-------CAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATCGATACTGCAGCGTGGATAGAGAGG-------AGCCCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATCGATACTGCAGCGTGGATAGAGAGGAGCC-------CCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATCGATACTGCAGC---GTGGATAGA---GAGGAGCCCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATCGATACTGCAGC---GTGGATAGA---GAGGAGCCCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATCGATACTGCAGC---GTGGATAGA---GAGGAGCCCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCC-TGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCACTTTCGACTG---AACTGGAGAGAGACACTGGCCT-GCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCC-TGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCACTTTCGACTG---AACTGGAGAGAGACACTGG-CCTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCACTTTCGACTGAACTGGAGAGAGACACT---GGCCTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGC-CTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCACTTTCGACT---GAACTGGAGAGAGACACTGGCC-TGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGC--------CTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCACTTTCGACT----------GAACTGGAGAGAGACACTGGCC-TGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCACTTTCGACTGAACTGGAGAGAGACACT---GGCCTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCACTTTCGACTGAACTGGAGAGAGACACT---GGCCTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCACTTTCGACTGAACTGGAGAGAGACACT---GGCCTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGAT-GTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTAC-CTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGAT-GTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTA-CCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATG-TTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGT-ACCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGAT-GTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTA-CCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATCATTCAGTGGTGCCCTCCCAGCCCTCCAGTACCTCTGCTGTCTCTTTTGATGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag #### Sec31b_ID9047_5 --> 0 - 0 Original Alignment AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTC-CAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCCAAGTCCAGCACATCCTTGCTTCTGCTC-CCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from CESAR AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTC-CAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCCAAGTCCAGCACATCCTTGCTTCTGCT-CCCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Spaln_aa2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCCAAGTCCAGCACATCCTTGCTTCTGCTCCCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Spaln_nt2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCA-AGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCCAAGTCCAGCACATCCTTGCTTCTGCTC-CCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Pairagon AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCT-CCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCCAAGTCCAGCACATCCTTGCTTCTGCTC-CCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Exonerate_protein2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCCAAGTCCAGCACATCCTTGCTTCTGCTCCCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Exonerate_coding2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCCAAGTCCAGCACATCCTTGCTTCTGCTCCCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from GeneWise AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCCAAGTCCAGCACATCCTTGCTTCTGCTCCCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGC-CGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCACCCACACTCTCTGAGAACTG-GGAGGCACCCATGCACTGGCTCAATggtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGC-CGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCACCCACACTCTCTGAGAACT-GGGAGGCACCCATGCACTGGCTCAATggtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCACCCACACTCTCTGAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCG-CCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCACCCACACTCTCTGAGAACTG-GGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCG-CCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCACCCACACTCTCTGAGAACTG-GGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCACCCACACTCTCTGAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCACCCACACTCTCTGAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACCGAAGCCGCCACCCACACTCTCTGAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAG-TGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGCTGGGAATCCTTCCTGAAGGCTCGACTCA-CTGCCATGTTCCACAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAG-TGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGCTGGGAATCCTTCCTGAAGGCTCGACTC-ACTGCCATGTTCCACAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGCTGGGAATCCTTCCTGAAGGCTCGACTCACTGCCATGTTCCACAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAG-TGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGCTGGGAATCCTTCCTGAAGGCTCGACTCA-CTGCCATGTTCCACAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAG-TGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGCTGGGAATCCTTCCTGAAGGCTCGACTCA-CTGCCATGTTCCACAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGCTGGGAATCCTTCCTGAAGGCTCGACTCACTGCCATGTTCCACAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGCTGGGAATCCTTCCTGAAGGCTCGACTCACTGCCATGTTCCACAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGCTGGGAATCCTTCCTGAAGGCTCGACTCACTGCCATGTTCCACAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcaggAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGA-TCAAGCTGTCTTT---AGCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from CESAR gAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcaggAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGA-TCAAGCTGTCTTT---AGCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCAcGCCATCTGCCGATACGACCTGGCGGAGAT-CAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGA-TCAAGCTGTCTTTA---GCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Pairagon GAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGA-TCAAGCTGTCTTTA---GCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCA-AGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTCAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCT-ACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACaggtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCA-AGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTCAGTGGAATT---CAGTTTCCTCTGTCCAGCTGC-TACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACaggtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCA-AGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTcAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTA-CGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCA-AGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTCAGTGGA---ATTCAGTTTCCTCTGTCCAGCTGCT-ACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGC-AAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTCAGTGGAA---TTCAGTTTCCTCTGTCCAGCTGCT-ACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTCAGTGG---AATTCAGTTTCCTCTGTCCAGCTGCTACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTCAGTGG---AATTCAGTTTCCTCTGTCCAGCTGCTACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCA------AGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGGCTGCTCAGTGGAATTCAGTTTCCTCTGTCCAGCTGCTA---------CGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc #### Sf1_ID1665_6 --> 1 - 0 Original Alignment aGGGAACACCCTGAAGAACATTGAGAAG-GAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaacaggagtaatcttgtcatgactcgcctcttgtttgtagaGGGAACACACTGAAGAACATTGATAAGCGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGAT-CGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCACGCCCTAGTCACTGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgttcagcccaggagatctggtaaccaattcatggtaggtgagtt Alignment from CESAR aGGGAACACCCTGAAGAACATTGAGAAG-GAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaacaggagtaatcttgtcatgactcgcctcttgtttgtagaGGGAACACACTGAAGAACATTGATAAGCGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGAT-CGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCACGCCCTAGTCACTGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgttcagcccaggagatctggtaaccaattcatggtaggtgagtt Alignment from Spaln_aa2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaacaggagtaatcttgtcatgactcgcctcttgtttgtagAGGGAACACACTGAAGAACATTGATAAGCGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCACGCCCTAGTCACTGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgttcagcccaggagatctggtaaccaattcatggtaggtgagtt Alignment from Spaln_nt2Genome AGGGAACACCCTGAAGAACATTGAGAAG-GAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaacaggagtaatcttgtcatgactcgcctcttgtttgtagAGGGAACACACTGAAGAACATTGATAAGCGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATC-GTGAAAGAGGGGAAAGTTGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCACGCCCTAGTCACTGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgttcagcccaggagatctggtaaccaattcatggtaggtgagtt Alignment from Pairagon AGGGAACACCCTGAAGAACATTGAGAAG-GAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaacaggagtaatcttgtcatgactcgcctcttgtttgtagAGGGAACACACTGAAGAACATTGATAAGCGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATC-GTGAAAGAGGGGAAAGTTGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCACGCCCTAGTCACTGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgttcagcccaggagatctggtaaccaattcatggtaggtgagtt Alignment from Exonerate_protein2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaacaggagtaatcttgtcatgactcgcctcttgtttgtagAGGGAACACACTGAAGAACATTGATAAGCGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCACGCCCTAGTCACTGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgttcagcccaggagatctggtaaccaattcatggtaggtgagtt Alignment from Exonerate_coding2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaacaggagtaatcttgtcatgactcgcctcttgtttgtagAGGGAACACACTGAAGAACATTGATAAGCGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCACGCCCTAGTCACTGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgttcagcccaggagatctggtaaccaattcatggtaggtgagtt Alignment from GeneWise AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaacaggagtaatcttgtcatgactcgcctcttgtttgtagAGGGAACACACTGAAGAACATTGATAAGCGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCACGCCCTAGTCACTGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgttcagcccaggagatctggtaaccaattcatggtaggtgagtt #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGAT-CTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccaagttttttgatgaggatcctgacctctttcctcccagATCCGAAACATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGA-CGGCACTCTAAGGGAGGAA---GCCcggtgagcggaatgttgaagaaaatgcatagaaggtttgagttttattgaag Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGAT-CTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccaagttttttgatgaggatcctgacctctttcctcccagATCCGAAACATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCC-TGACGGCACTCTAAGGGAG---GAAGCCcggtgagcggaatgttgaagaaaatgcatagaaggtttgagttttattgaag Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGAT-CTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggatcctgacctctttcctcccagATCCGAAACATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATcCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGAC-GGCACTCTAAGGGAG---GAAGCCCGgtgagcggaatgttgaagaaaatgcatagaaggtttgagttttattgaag Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATC-TACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggatcctgacctctttcctcccagATCCGAAACATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTG-ACGGCACTCTAAGGGAGGAAG---CCCGgtgagcggaatgttgaagaaaatgcatagaaggtttgagttttattgaag Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGAT-CTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGA----------------------------------------------------- agccaaactgccaagttttttgatgaggatcctgacctctttcctcccagATCCGAAACATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTG-ACGGCACTCTAAGGGAGGAAGCCCGGTGAGCGGAATGTTGAAGAAAATGCATAGAAGGTTTGAGTTTTATTGAAG Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccaagttttttgatgaggatcctgacctctttcctcccagATCCGAAACATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGACGGCACTCTAAGGGAGGAAGCCCGgtgagcggaatgttgaagaaaatgcatagaaggtttgagttttattgaag Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccaagttttttgatgaggatcctgacctctttcctcccagATCCGAAACATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGACGGCACTCTAAGGGAGGAAGCCCGgtgagcggaatgttgaagaaaatgcatagaaggtttgagttttattgaag Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccaagttttttgatgaggatcctgacctctttcctcccagATCCGAAACATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCCTACAAAAGATGCAGCTTCGAGAATTGGCTCGCCTGACGGCACTCTAAGGGAGGAAGCCCGgtgagcggaatgttgaagaaaatgcatagaaggtttgagttttattgaag #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCAT-GGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATCGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCC-CAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCAT-GGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATCGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCC-CCAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATCGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCCAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCAT-GGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATCGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCC-CAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCAT-GGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATCGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCC-CAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATCGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCCAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATCGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCCAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATCGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCCAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATT-ATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from CESAR GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAG-ATTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Spaln_aa2Genome GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTcGAGACACGGCTGAAGGAGAAGAAACCTGGAGA-TTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Spaln_nt2Genome GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGA-TTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Pairagon GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGA-TTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaaatcctgatgatgaagcatggtgctgccctatgccagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagtgcaggctgagtgcatggcagtgcctgataggggggaaagtattg #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCG-GAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCACGAGGCCCCCAAACTATCACGAAAGAAGTTGC-CCGAATGAATCGATTTACTGTGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from CESAR GAAAAGAAGCCG-GAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCACGAGGCCCCCAAACTATCACGAAAGAAGTTG-CCCGAATGAATCGATTTACTGTGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Spaln_aa2Genome GAAAAGAAGCCG-GAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCAcGAGGCCCCCAAACTATCACGAAAGAAGTTGCC-CGAATGAATCGATTTACTGTGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Spaln_nt2Genome GAAAAGAAGCCG-GAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCACGAGGCCCCCAAACTATCACGAAAGAAGTTGC-CCGAATGAATCGATTTACTGTGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Pairagon GAAAAGAAGCCG-GAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCACGAGGCCCCCAAACTATCACGAAAGAAGTTGC-CCGAATGAATCGATTTACTGTGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCACGAGGCCCCCAAACTATCACGAAAGAAGTTGCCCGAATGAATCGATTTACTGTGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCACGAGGCCCCCAAACTATCACGAAAGAAGTTGCCCGAATGAATCGATTTACTGTGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacctgatgccacctaaaaacttatttatctttttacagAAGAAGAAGCCACGAGGCCCCCAAACTATCACGAAAGAAGTTGCCCGAATGAATCGATTTACTGTGGCAGAGCTGAAGCAGgtgagttctgggaaggtcaagccagctactccagttctgttgggcattca #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAG-AAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG caattggggcattaggatcccagaattagtcttcttgtattttcctccagAAAAACCGAAAACATCAAAACCGGAAGAAGAAACAAAAAACCAAAGCAGGTGCGGGCAGCCTCAT-AAAGAGCTCTGGGGATAGAGAAAAGGACTCTGGTCGGTCCCAAGGGTCAGGCCCGCCCACAGGT---ATAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCTTTTAAGgttggctggctcatgcctcttctgaggacctatgttgattaagggggcaa Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAG-AAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG caattggggcattaggatcccagaattagtcttcttgtattttcctccagAAAAACCGAAAACATCAAAACCGGAAGAAGAAACAAAAAACCAAAGCAGGTGCGGGCAGCCTCA-TAAAGAGCTCTGGGGATAGAGAAAAGGACTCTGGTCGGTCCCAAGGGTCAGGCCCGCCCACAGGT---ATAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCTTTTAAGgttggctggctcatgcctcttctgaggacctatgttgattaagggggcaa Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG caattggggcattaggatcccagaattagtcttcttgtattttcctccagAAAAACCGAAAACATCAAAACCGGAAGAAGAAACAAAAAACCAAAGCAGGTGCGGGCAGCCTCATAAAGAGCTCTGGGGATAGAGAAAAGGACTCTGGTCGGTCCCAAGGGTCAGGCCCGCCCACAGGT---ATAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCTTTTAAGgttggctggctcatgcctcttctgaggacctatgttgattaagggggcaa Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAG-AAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG caattggggcattaggatcccagaattagtcttcttgtattttcctccagAAAAACCGAAAACATCAAAACCGGAAGAAGAAACAAAAAACCAAAGCAGGTGCGGGCAGCCTCAT-AAAGAGCTCTGGGGATAGAGAAAAGGACTCTGGTCGGTCCCAAGGGTCAGGCCCGCCCACAGGT---ATAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCTTTTAAGgttggctggctcatgcctcttctgaggacctatgttgattaagggggcaa Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAG-AAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTG------------GAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG caattggggcattaggatcccagaattagtcttcttgtattttcctccagAAAAACCGAAAACATCAAAACCGGAAGAAGAAACAAAAAACCAAAGCAGGTGCGGGCAGCCTCAT-AAAGAGCTCTGGGGATAGAGAAAAGGACTCTGGTCGGTCCCAAGGGTCAGGCCC---------------GCCCACAGGTATAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCTTTTAAGgttggctggctcatgcctcttctgaggacctatgttgattaagggggcaa Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG caattggggcattaggatcccagaattagtcttcttgtattttcctccagAAAAACCGAAAACATCAAAACCGGAAGAAGAAACAAAAAACCAAAGCAGGTGCGGGCAGCCTCATAAAGAGCTCTGGGGATAGAGAAAAGGACTCTGGTCGGTCCCAAGGGTCAGGCCCGCCCACAGGT---ATAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCTTTTAAGgttggctggctcatgcctcttctgaggacctatgttgattaagggggcaa Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG caattggggcattaggatcccagaattagtcttcttgtattttcctccagAAAAACCGAAAACATCAAAACCGGAAGAAGAAACAAAAAACCAAAGCAGGTGCGGGCAGCCTCATAAAGAGCTCTGGGGATAGAGAAAAGGACTCTGGTCGGTCCCAAGGGTCAGGCCCGCCCACAGGT---ATAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCTTTTAAGgttggctggctcatgcctcttctgaggacctatgttgattaagggggcaa Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG caattggggcattaggatcccagaattagtcttcttgtattttcctccagAAAAACCGAAAACATCAAAACCGGAAGAAGAAACAAAAAACCAAAGCAGGTGCGGGCAGCCTCATAAAGAGCTCTGGGGATAGAGAAAAGGACTCTGGTCGGTCCCAAGGGTCAGGCCCGCCCACAGGT---ATAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCTTTTAAGgttggctggctcatgcctcttctgaggacctatgttgattaagggggcaa #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagagAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGA-TGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from CESAR agGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagagAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAG-ATGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Spaln_aa2Genome GGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagagAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGAT-GAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGA-TGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Pairagon AGGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGA-TGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGATGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Exonerate_coding2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAA--ATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGAT-GAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from GeneWise -----------CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagATGTGCCTCTTGCAGAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGATGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gagcatggcatttttgagtttcagccccggcttccaatatacctttgcagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAAGATCCTTCAGCTGAAGGAGAGCC-GCAGCAAGAGATGAACTCTCAG---ggtaagcgagattaaacattgccttgatacttcaacagcacattagctggg Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gagcatggcatttttgagtttcagccccggcttccaatatacctttgcagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAAGATCCTTCAGCTGAAGGAGAGCC-GCAGCAAGAGATGAACTCT---CAGggtaagcgagattaaacattgccttgatacttcaacagcacattagctggg Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- gagcatggcatttttgagtttcagccccggcttccaatatacctttgcagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGcGCTTTGGAAAAGATCCTTCAGCTGAAGGAGAGCCG-CAGCAAGAGATGAACTCTCAGGgtaagcgagattaaacattgccttgatacttcaacagcacattagctggg Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gagcatggcatttttgagtttcagccccggcttccaatatacctttgcagAT---TGACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAAGATCCTTCAGCTGAAGGAGAGCCG-CAGCAAGAGATGAACTCT---CAGGgtaagcgagattaaacattgccttgatacttcaacagcacattagctggg Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gagcatggcatttttgagtttcagccccggcttccaatatacctttgcagAT---TGACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAAGATCCTTCAGCTGAAGGAGAGCC-GCAGCAAGAGATGAACTCT---CAGGgtaagcgagattaaacattgccttgatacttcaacagcacattagctggg Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gagcatggcatttttgagtttcagccccggcttccaatatacctttgcagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAAGATCCTTCAGCTGAAGGAGAGCCGCAGCAAGAGATGAACTCTCAGGGTAAgcgagattaaacattgccttgatacttcaacagcacattagctggg Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gagcatggcatttttgagtttcagccccggcttccaatatacctttgcagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAAGATCCTTCAGCTGAAGGAGAGCCGCAGCAAGAGATGAACTCTCAGGGTAAgcgagattaaacattgccttgatacttcaacagcacattagctggg Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gagcatggcatttttgagtttcagccccggcttccaatatacctttgcagATTGAC---CCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAAGATCCTTCAGCTGAAGGAGAGCCGCAGCAAGAGATGAACTCT---CAGGgtaagcgagattaaacattgccttgatacttcaacagcacattagctggg #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGC-ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAAGTGGTTATCTCTCGAATCTCAA-GGCAGCACCTGCTGGCATGagtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from CESAR AGAGCTGCGGCTGTGGGC-ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAAGTGGTTATCTCTCGAATCTCA-AGGCAGCACCTGCTGGCATGagtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGC---ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAAGTGGTTATCTCTCGAATCTCAAGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGC-ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAAGTGGTTATCTCTCGAATC-TCAAGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Pairagon AGAGCTGCGGCTGTGG-GCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCC---CTGGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAAGTGGTTATCTCTCGAATC-TCAAGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGC---ATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCCATCACACAAGTGGTTATCTCTCGAATCTCAAGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Exonerate_coding2genome cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagagagcagcaactgtggcccatcacacaagtggttatctctcgaatctcaaggcagcacctgctggcatgagtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from GeneWise cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagagagcagcaactgtggcccatcacacaagtggttatctctcgaatctcaaggcagcacctgctggcatgagtaggtttgattagggtgagacatattttagtaataaactggtgctacat #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACA-GCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacaggCAGTTAGGGACACGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGG-ACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from CESAR gCAGTTGGGGACA-GCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacaggCAGTTAGGGACACGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTC-TGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Spaln_aa2Genome GCAGTTGGGGACA-GCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAcGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGA-CTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Spaln_nt2Genome GCAGTTGGGGACA-GCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACACGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCT-GGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Pairagon GCAGTTGGGGACA-GCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACACGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCT-GGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACACGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Exonerate_coding2genome GCAGTTGGGGACAGC---CTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACA--CGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCT-GGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACACGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCC-TTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCCTTCTGTCCTATGACAATCTGCTCTCACTTCC-GCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACaggcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAG-CCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCCTTCTGTCCTATGACAATCTGCTCTCACTTC-CGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACaggcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCC-CTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCCTTCTGTCCTATGACAATCTGCTCTCACTTCC-GCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAG-CCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCCTTCTGTCCTATGACAATCTGCTCTCACTTCC-GCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAGGGTGGCAGTGAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGGCAAGTACTTGGgtgaacttgtgtcatagggtggggtcaactatcatcat #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTACACAC-TAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTACACA-CTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGcATCATGTTTCACGTGTCCACGATGCTGCCTTACACACT-AATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTACAC-ACTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTACACA-CTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTAC--ACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTACACACT---AATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAG-ATCATGTTTCACGTGTCCACGATGCTGCCTTAC--ACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGCATCATGTTTCACGTGTCCACGATGCTGCCTTACACACT---AATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG------CTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAG------CATCATGTTTCACGTGTCCACGATGCTGCCTTACACACTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGG-CTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagaaCACCAAAACTTCTTTGGGCCTAGACGAGGCACTGGGCCCTGTGGCTTTGA-TCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctcgggtgttatttatttcctta Alignment from CESAR aaCACCAGAACTTCTTTGGG-CTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagaaCACCAAAACTTCTTTGGGCCTAGACGAGGCACTGGGCCCTGTGGCTTTG-ATCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctatgtgctgtgttttaacccca Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCCTAGACGAGGCACTGGGCCCTGTGGCTTTGATCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctcgggtgttatttatttcctta Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGC-TGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCCTAGACGAGGCACTGGGCCCTGTGGCTTTGA-TCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctcgggtgttatttatttcctta Alignment from Pairagon AACACCAGAACTTCTTTGGG-CTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCCTAGACGAGGCACTGGGCCCTGTGGCTTTGA-TCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctcgggtgttatttatttcctta Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCCTAGACGAGGCACTGGGCCCTGTGGCTTTGATCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctcgggtgttatttatttcctta Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCCTAGACGAGGCACTGGGCCCTGTGGCTTTGATCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctcgggtgttatttatttcctta Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCCTAGACGAGGCACTGGGCCCTGTGGCTTTGATCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctcgggtgttatttatttcctta #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACA-CTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from CESAR ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAAC-ACTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACACTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCC-AAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACA-CTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Pairagon ATGCAGTCCACCTATGTCCT-CCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACA-CTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACACTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from Exonerate_coding2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACACTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ggctctacctacctcactatgtatcgtccctgtgctctctgtctccgcagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACACTTCAGGACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagttgctacaacatgattagatcacaataaggacacttggtggggca #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagtgTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCT-CTCATCTGTGGCTggtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagtgTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCC-TCTCATCTGTGGCTggtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCcTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTC-TCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCC-TTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCT-CTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATG-CCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCT-CTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGC-TCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagcgATGGGGGTCCTTCGCCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTG-CGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCaggtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from CESAR ggATGGGGGTCCTTCGC-TCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagcgATGGGGGTCCTTCGCCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGT-GCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCaggtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Spaln_aa2Genome ----GGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGC-GCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGC-TCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCT-AGGTGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Pairagon GGATGGGGGTCCTTCG-CTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCT-AGGTGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATC-TTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gaggaattgacccaggctagtctatcttatgtgccttctccttcccacaggTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATACTTTCTCCTCCAGTCAATCATTGGGATAG-GGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATggtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATC-TTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gaggaattgacccaggctagtctatcttatgtgccttctccttcccacaggTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATACTTTCTCCTCCAGTCAATCATTGGGATA-GGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATggtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATACTTTCTCCTCCAGTCAATCATTGGGATAGGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATAT-CTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATACTTTCTCCTCCAGTCAATCATTGGGATAG-GGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGG---TCCCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATAT-CTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATACTTTCTCCTCCAGTCAATCATTGGGATAG-GGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGG---TCCCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATACTTTCTCCTCCAGTCAATCATTGGGATAGGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATACTTTCTCCTCCAGTCAATCATTGGGATAGGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGACCTT---------GGAAGCAATATACTTTCTCCTCCAGTCAATCATTGGGATAGGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCC-ACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctccccctttgaattctcatcatcacaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCC-GCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCtgtacagcccactcctagtgcgacgttgtaaaggctactgcaacctcttcc Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATG-CCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctccccctttgaattctcatcatcacaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTTCCCACTGCATTGTCTGTTTTCCTTC-CGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCtgtacagcccactcctagtgcgacgttgtaaaggctactgcaagtgttcct Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaacctcttcc Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCC-ACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCC-GCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaacctcttcc Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATG-CCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCC-GCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaacctcttcc Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaacctcttcc Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaacctcttcc Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctccccctttgaattctcatcatcacagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCGGTCTCTgtacagcccactcctagtgcgacgttgtaaaggctactgcaacctcttcc #### Slc22a20_ID1344_9 --> 1 - 2 Original Alignment gCAGATGGGGATGGGATTTGCTTCTGTCAAT-GCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcg gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggCAAATGGGTATGGAGTTTGCTTCTGTCAATCGCT---CTTGGAGGTTTGGTGGCCCCACTGATCA-ATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from CESAR gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGC-CTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcg gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggCAAATGGGTATGGAGTTTGCTTCTGTCAAT---CGCTCTTGGAGGTTTGGTGGCCCCACTGATC-AATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Spaln_aa2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATC--GCTCTTGGAGGTTTGGTGGCCCCACTGATCAA-TCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Spaln_nt2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGC-CTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAAT---CGCTCTTGGAGGTTTGGTGGCCCCACTGATCA-ATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Pairagon GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGC-CTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAAT---CGCTCTTGGAGGTTTGGTGGCCCCACTGATCAAT-CACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Exonerate_protein2genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAAT---CGCTCTTGGAGGTTTGGTGGCCCCACTGATCAATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Exonerate_coding2genome gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggcaaatgggtatggagtttgcttctgtcaatcgctcttggaggtttggtggccccactgatcaatcactaggagagatcagcccagtcctgccaccagtatcctttggtgccacatctgttctggctggcatggctgtggcttgcttcctgactgagacccgtaatgtgccactggtagaaactattgctgcaatggagagacggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from GeneWise GCAGATGGGGATGGGATTTGCTTCTGTCAATGCC------CGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGA-- gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATCGCTCTTGGAGGTTTGGTGGC---------CCCACTGATCAATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGGTAgtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTT-CAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAA-TTTTGTCTTGCTTATACCCACCaggtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTT-CAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAA-TTTTGTCTTGCTTATACCCACCaggtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCA-TTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCAtTTCCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAAT-TTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCA-TTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAAT-TTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTT-CAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAAT-TTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCA-TTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCA--ATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAAT---TTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCA-TTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCA--ATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAAT---TTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTT-GCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGG-- cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTGTCTTGCTTATACCCACCAGGTGCgtacctttgattatcctcaccatttttaaatagaccacagggatga #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTG---TTCGGCGCCATGA-GTTTGGTTACCTTGCAGATaggtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTC---GGCGCCATG-AGTTTGGTTACCTTGCAGATaggtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTG---CGCCCAGTCACTGTTCATGGTGGGAGTGTTCGGCGCCATGAGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGT---TCGGCGCCATGA-GTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGCGCCCAGTCACTGTTCATGGTGGGAGTGTTC---GGCGCCATGA-GTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTG---CGCCCAGTCACTGTTCATGGTGGGAGTGTTCGGCGCCATGAGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Exonerate_coding2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTG---CGCCCAGTCACTGTTCATGGTGGGAGTGTTCGGCGCCATGAGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTG---CGCCCAGTCACTGTTCATGGTGGGAGTGTTCGGCGCCATGAGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTT-GGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagaaATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCC-CTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCaggtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTT-GGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagaaATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGC-CCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCaggtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTG-GGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCC-CTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGG-AAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCC-CTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAA-ATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtctgcactggactgtctcatgtggctctctcactttaggCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAACGTCACAGGAGAACTGCAGCCCTTCATCCCTA-TGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACtggtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAA-ATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtctgcactggactgtctcatgtggctctctcactttaggCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAACGTCACAGGAGAACTGCAGCCCTTCATCCCT-ATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACtggtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAACGTCACAGGAGAACTGCAGCCCTTCATCCCTATGTCATCTTTGGAACCATGCTA---CTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAA-TCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAACGTCACAGGAGAACTGCAGCCCTTCATCCCTA-TGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAA-ATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAACGTCACAGGAGAACTGCAGCCCTTCATCCCT-ATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAACGTCACAGGAGAACTGCAGCCCTTCATCCCTATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAACGTCACAGGAGAACTGCAGCCCTTCATCCCTATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAACGTCACAGGAGAACTGCAGCCCTTCATCCCTATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGCTTC-TTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagcTACCACTTGGCTGGCATCAGCTTTCTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATT-CTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from CESAR cTACCACCTGGTTGGGATCAGC-TTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagcTACCACTTGGCTGGCATCAGCTTTCTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGA-ATTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGC-TTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCtTTCTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAA-TTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGCTT-CTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTCTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAA-TTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Pairagon CTACCACCTGGTTGGGATCAGCT-TCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTCTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAA-TTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTCTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Exonerate_coding2genome AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtAGCTACCACTTGGCTGGCATCAGCTTTCTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from GeneWise AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtAGCTACCACTTGGCTGGCATCAGCTTTCTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGAATTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTC-AACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGC-TCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGtggtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTC-AACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCCAATTTCAACAATTGGGTGACACTGCTATCCCAGT-TGCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGtggtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Spaln_nt2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTC-AACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTG-CTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACAC-TTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTG-CTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Exonerate_coding2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcaggtGGTGTGGATGCCCAGACCTCTGCTCCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCC-CATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcaggtGGTGTGGATGCCCAGACCTCTGCTCCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCC-TCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTcCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCC-ATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTC-CCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTC-CCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTC--TCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCC---ATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGG-ATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCT-CCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa #### Slc29a2_ID793_7 --> 0 - 1 Original Alignment AAGTTTGCCCGTTACTAC-CTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTg agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCCTAACCAAGAAGCTATCTCAAGCTCCAACTC-GGAGCTTGAAAATAAAGCTGAACTCCTCCAAGCAggtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from CESAR AAGTTTGCCCGTTACTAC-CTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTg agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCCTAACCAAGAAGCTATCTCAAGCTCCAACT-CGGAGCTTGAAAATAAAGCTGAACTCCTCCAAGCAggtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Spaln_aa2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCCTAACCAAGAAGCTATCTCAAGCTCCAACTCGGAGCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Spaln_nt2Genome AAGTTTGCCCGTTACTACC-TGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCCTAACCAAGAAGCTATCTCAAGCTCCAACTCG-GAGCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Pairagon AAGTTTGCCCGTTACTA-CCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCCTAACCAAGAAGCTATCTCAAGCTCCAACTC-GGAGCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Exonerate_protein2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCCTAACCAAGAAGCTATCTCAAGCTCCAACTCGGAGCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Exonerate_coding2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCCTAACCAAGAAGCTATCTCAAGCTCCAACTCGGAGCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from GeneWise AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCCTAACCAAGAAGCTATCTCAAGCTCCAACTCGGAGCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTT-CCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCCTGCTATCACAGCCATGGTGACCACCAGCTCCA-TAGCCCTGGGAAATGGggtcagtgctggcgatagtgcacagcatggaacaggggagccaggtcttgg Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTT-CCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCCTGCTATCACAGCCATGGTGACCACCAGCTCC-ATAGCCCTGGGAAATGGggtcagtgctggcgatagtgcacagcatggaacaggggagccagcacccca Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCT-GCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCCtGCTATCACAGCCATGGTGACCACCAGCTCCAT-AGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccaggtcttgg Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCC-TGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCCTGCTATCACAGCCATGGTGACCACCAGCTCC-ATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccaggtcttgg Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTT-CCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCCTGCTATCACAGCCATGGTGACCACCAGCTCC-ATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccaggtcttgg Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCCTGCTATCACAGCCATGGTGACCACCAGCTCCATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccaggtcttgg Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCCTGCTATCACAGCCATGGTGACCACCAGCTCCATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccaggtcttgg Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCCTGCTATCACAGCCATGGTGACCACCAGCTCCATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccaggtcttgg #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCT-ATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcaggtCTGTTCTTCAACCCTCATCTGTTGCTTTCTGCTCTTCAACGTCA-GGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from CESAR gtCTGTTCTTCAACCCT-ATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcaggtCTGTTCTTCAACCCTCATCTGTTGCTTTCTGCTCTTCAACGTC-AGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCT-ATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTcATCTGTTGCTTTCTGCTCTTCAACGTCAG-GATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCT-ATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTCATCTGTTGCTTTCTGCTCTTCAACGTCA-GGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Pairagon GTCTGTTCTTCAACCCT-ATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTCATCTGTTGCTTTCTGCTCTTCAACGTCA-GGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTCATCTGTTGCTTTCTGCTCTTCAACGTCAGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTCATCTGTTGCTTTCTGCTCTTCAACGTCAGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTCATCTGTTGCTTTCTGCTCTTCAACGTCAGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTG-CTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCA-CTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTG-CTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCA-CTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTG-CTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGcCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCACTATGGG-GATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTG-CTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCA-CTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTG-CTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCA-CTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCACTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCACTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCACTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCC-ACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtactgttgtacttttgtgtcccctaccctcagaCTTTTGATTGCAGGGACTGAATCCTCCGACCTGCAGCAGATTCTCAATATACTAGAGTCTACCAGTGACCTGCTGTTGACTAGCTCCTATCTTTCAAATTCTCACATACACTGGGGAACGCACAGAATCTTTAG-AACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtaaccggcatgatgaccagcctagacctgtaagtgtaggtaggaggggg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCC-ACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtactgttgtacttttgtgtcccctaccctcagaCTTTTGATTGCAGGGACTGAATCCTCCGACCTGCAGCAGATTCTCAATATACTAGAGTCTACCAGTGACCTGCTGTTGACTAGCTCCTATCTTTCAAATTCTCACATACACTGGGGAACGCACAGAATCTTTA-GAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtaaccggcatgatgaccagcctagacctgtaagtgtaggtaggaggggg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtactgttgtacttttgtgtcccctaccctcagACTTTTGATTGCAGGGACTGAATCCTCCGACCTGCAGCAGATTCTCAATATACTAGAGTCTACCAGTGACCTGCTGTTGACTAGCTCCTATCTTTCAAATTCTCACATACACTGGGGAACGCACAGAATCTTTAGAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtaaccggcatgatgaccagcctagacctgtaagtgtaggtaggaggggg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTC-CACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtactgttgtacttttgtgtcccctaccctcagACTTTTGATTGCAGGGACTGAATCCTCCGACCTGCAGCAGATTCTCAATATACTAGAGTCTACCAGTGACCTGCTGTTGACTAGCTCCTATCTTTCAAATTCTCACATACACTGGGGAACGCACAGAATCTTTAG-AACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtaaccggcatgatgaccagcctagacctgtaagtgtaggtaggaggggg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTC-CACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtactgttgtacttttgtgtcccctaccctcagACTTTTGATTGCAGGGACTGAATCCTCCGACCTGCAGCAGATTCTCAATATACTAGAGTCTACCAGTGACCTGCTGTTGACTAGCTCCTATCTTTCAAATTCTCACATACACTGGGGAACGCACAGAATCTTTAG-AACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtaaccggcatgatgaccagcctagacctgtaagtgtaggtaggaggggg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtactgttgtacttttgtgtcccctaccctcagACTTTTGATTGCAGGGACTGAATCCTCCGACCTGCAGCAGATTCTCAATATACTAGAGTCTACCAGTGACCTGCTGTTGACTAGCTCCTATCTTTCAAATTCTCACATACACTGGGGAACGCACAGAATCTTTAGAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtaaccggcatgatgaccagcctagacctgtaagtgtaggtaggaggggg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtactgttgtacttttgtgtcccctaccctcagACTTTTGATTGCAGGGACTGAATCCTCCGACCTGCAGCAGATTCTCAATATACTAGAGTCTACCAGTGACCTGCTGTTGACTAGCTCCTATCTTTCAAATTCTCACATACACTGGGGAACGCACAGAATCTTTAGAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtaaccggcatgatgaccagcctagacctgtaagtgtaggtaggaggggg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtactgttgtacttttgtgtcccctaccctcagACTTTTGATTGCAGGGACTGAATCCTCCGACCTGCAGCAGATTCTCAATATACTAGAGTCTACCAGTGACCTGCTGTTGACTAGCTCCTATCTTTCAAATTCTCACATACACTGGGGAACGCACAGAATCTTTAGAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtaaccggcatgatgaccagcctagacctgtaagtgtaggtaggaggggg #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt tccttttttgggcgtgggcggccaggcactttttttttttttaactacagcACACTCAATAATAATCAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATA-CCCTAAGCTGCGCACTttgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from CESAR gACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt tccttttttgggcgtgggcggccaggcactttttttttttttaactacagcACACTCAATAATAATCAACATCAGCACTATCCCGGTGTCCAGTTTCAATCAT-ACCCTAAGCTGCGCACTttgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Spaln_aa2Genome GACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATcAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATAC-CCTAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Spaln_nt2Genome GACCCTGAACAACAA-CAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATCAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATA-CCCTAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Pairagon GACCCTGAACAACAA-CAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATCAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATAC-CCTAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATCAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATACCCTAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Exonerate_coding2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATCAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATACCCTAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATCAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATACCCTAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc #### Snx15_ID1466_6 --> 2 - 1 Original Alignment tgGATCCCCTCCCGTCCAGCCCTGCC-CAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgttttcacccctagggtgagtctcaactgctttttaacctttcattagtgGACCCTCTACCATCTGGTCCTGCCCCAGGAGGCCCTGGATCCTCTCTTCAGCT-TGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGggttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from CESAR tgGATCCCCTCCCGTCCAGCCCTGCC-CAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgttttcacccctagggtgagtctcaactgctttttaacctttcattagtgGACCCTCTACCATCTGGTCCTGCCCCAGGAGGCCCTGGATCCTCTCTTCAGC-TTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGggttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Spaln_aa2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCCAGGAGGCCCTGGATCCTCTCTTCAGCTTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Spaln_nt2Genome TGGATCCCCTCCCGTCCAGCCCTGCCC-AGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCCAGGAGGCCCTGGATCCTCTCTTCAGCT-TGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Pairagon TGGATCCCCTCCCGTCCAGCCCTG-CCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCCAGGAGGCCCTGGATCCTCTCTTCAGCT-TGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Exonerate_protein2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCCAGGAGGCCCTGGATCCTCTCTTCAGCTTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from Exonerate_coding2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCCAGGAGGCCCTGGATCCTCTCTTCAGCTTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa Alignment from GeneWise TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcacccctagggtgagtctcaactgctttttaacctttcattagTGGACCCTCTACCATCTGGTCCTGCCCCAGGAGGCCCTGGATCCTCTCTTCAGCTTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGATCTTACACTTTTTGACCCTTACTCCAAAGAGGgttagactggctggagtggcagtcctaagggctttgaagaacacccacaa #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTG-CTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcaggaCGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACA-CCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTG-CTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcaggaCGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACA-CCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTG-CTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGcCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACAC-CCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGC-TGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACACCCTCA-AGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTG-CTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACA-CCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACACCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACACCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCCTGCGCTTCACAGTGCCGATCCCTGCCCTCAACAACACCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCAC-CGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg cggtgtcttacccggctctcactcaggttctggcctccctgtttccacagGTAGTAGTCTGGAAGCAGTACAGTGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCCGGAATCTCTTTCAGCATCTAGAGGAGTTCCCAGCCTTCCCCC-AGCCCAGGTGTTTggtgaggtttggactctgtacctctccagctcagggcatcaagaattttcc Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCAC-CGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg cggtgtcttacccggctctcactcaggttctggcctccctgtttccacagGTAGTAGTCTGGAAGCAGTACAGTGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCCGGAATCTCTTTCAGCATCTAGAGGAGTTCCCAGCCTTCCCCC-AGCCCAGGTGTTTggtgaggtttggactctgtacctctccagctcagggcatcaagaattttcc Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCAC-CGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cggtgtcttacccggctctcactcaggttctggcctccctgtttccacagGTAGTAGTCTGGAAGCAGTACAGTGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACcCGGAATCTCTTTCAGCATCTAGAGGAGTTCCCAGCCTTCCCCCA-GCCCAGGTGTTTGgtgaggtttggactctgtacctctccagctcagggcatcaagaattttcc Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACC-GAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cggtgtcttacccggctctcactcaggttctggcctccctgtttccacagGTAGTAGTCTGGAAGCAGTACAGTGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCCGGAATCTCTTTCAGCATCTAGAGGAGTTCCCAGCCTTCCCCC-AGCCCAGGTGTTTGgtgaggtttggactctgtacctctccagctcagggcatcaagaattttcc Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCA-CCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cggtgtcttacccggctctcactcaggttctggcctccctgtttccacagGTAGTAGTCTGGAAGCAGTACAGTGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCCGGAATCTCTTTCAGCATCTAGAGGAGTTCCCAGCCTTCCCCCA-GCCCAGGTGTTTGgtgaggtttggactctgtacctctccagctcagggcatcaagaattttcc Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCAC-CGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTT cggtgtcttacccggctctcactcaggttctggcctccctgtttccacagGTAGTAGTCTGGAAGCAGTACAGTGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCCGGAATCTCTTTCAGCATCTAGAGGAGTTCCCAGCCTTCCCCCAGCCCAGGTGTTTGgtgaggtttggactctgtacctctccagctcagggcatcaagaattttcc Alignment from Exonerate_coding2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCAC-CGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTT cggtgtcttacccggctctcactcaggttctggcctccctgtttccacagGTAGTAGTCTGGAAGCAGTACAGTGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCCGGAATCTCTTTCAGCATCTAGAGGAGTTCCCAGCCTTCCCCCAGCCCAGGTGTTTGgtgaggtttggactctgtacctctccagctcagggcatcaagaattttcc Alignment from GeneWise TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cggtgtcttacccggctctcactcagGTTCTGGCCTCCCTGTTTCCACAG------------GTAGTAGTCTGGAAGCAGTACAGTGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCCGGAATCTCTTTCAGCATCTAGAGGAGTTCCCAGCCTTCCCCCAGCCCAGGTGTTTGgtgaggtttggactctgtacctctccagctcagggcatcaagaattttcc #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGG-CTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGGAAAAGAACAGGAAGGAAGTATCTGGGGGGCCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCC-CATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTC-TTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGGAAAAGAACAGGAAGGAAGTATCTGGGGGGCCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATC-CCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGGAAAAGAACAGGAAGGAAGTATCTGGGGGGCCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCT-TGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGG---CATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGGAAAAGAACAGGAAGGAAGTATCTGGGGGGCCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCC-CATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCT-TGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGGAAAAGAACAGGAAGGAAGTATCTGGGGGGCCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCC-CATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTC-TTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTC--CTCATCACCGGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGGAAAAGAACAGGAAGGAAGTATCTGGGGGGCCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTC-TTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTC--CTCATCACCGGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGGAAAAGAACAGGAAGGAAGTATCTGGGGGGCCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGGAAAAGAACAGGAAGGAAGTATCTGGGGGGCCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCC-CATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCT-CTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCC-CATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCA-TCTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAG-CCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCT-CTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAG-CCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATC-TCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCC-CATCCCACCCTGCGTCGGGACCACAACTTCTCCGTC--TTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTC---TTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCC-CATCCCACCCTGCGTCGGGACCACAACTTCTCCGTC--TTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTC---TTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCA-GCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTC-TTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCAC-AACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccaatccttatatggcaaagcatttactaacctactcctctcttcacagaTACCCCAATGTCAATGTGCATCAACTTCACCACCAGCTGGAGAGATGGGCTAG-CTTTAATGCCATCGTGCACAAACACcggtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from CESAR aTACCCCAATGTCAATGTGCAC-AACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccaatccttatatggcaaagcatttactaacctactcctctcttcacagaTACCCCAATGTCAATGTGCATCAACTTCACCACCAGCTGGAGAGATGGGCTAG-CTTTAATGCCATCGTGCACAAACACcggtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCAC-AACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATcAACTTCACCACCAGCTGGAGAGATGGGCTAGC-TTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCA-CAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATCAACTTCACCACCAGCTGGAGAGATGGGCTAG-CTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Pairagon ATACCCCAATGTCAATGTGCA-CAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATCAACTTCACCACCAGCTGGAGAGATGGGCTAG-CTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATCAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATCAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATCAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACAT-GAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacctccacttagtaaacactcttctgttttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATCGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGA-AAAACTAGAGCAACTAGCTGCTCGATTTGACCACAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaggttttgcatgggctcatggttcagacacatccaggctggtggggag Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACAT-GAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacctccacttagtaaacactcttctgttttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATCGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCC-AGAAAAACTAGAGCAACTAGCTGCTCGATTTGACCACAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaggttttgcatgggctcatggttcagacacatccaggctggtggggag Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACAT-GAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacctccacttagtaaacactcttctgttttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATcGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCA-GAAAAACTAGAGCAACTAGCTGCTCGATTTGACCACAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaggttttgcatgggctcatggttcagacacatccaggctggtggggag Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACAT-GAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacctccacttagtaaacactcttctgttttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATCGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCA-GAAAAACTAGAGCAACTAGCTGCTCGATTTGACCACAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaggttttgcatgggctcatggttcagacacatccaggctggtggggag Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACAT-GAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacctccacttagtaaacactcttctgttttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATCGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCA-GAAAAACTAGAGCAACTAGCTGCTCGATTTGACCACAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaggttttgcatgggctcatggttcagacacatccaggctggtggggag Alignment from Exonerate_protein2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacctccacttagtaaacactcttctgttttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATCGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAACTAGAGCAACTAGCTGCTCGATTTGACCACAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaggttttgcatgggctcatggttcagacacatccaggctggtggggag Alignment from Exonerate_coding2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacctccacttagtaaacactcttctgttttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATCGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAACTAGAGCAACTAGCTGCTCGATTTGACCACAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaggttttgcatgggctcatggttcagacacatccaggctggtggggag Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacctccacttagtaaacactcttctgttttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATCGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAACTAGAGCAACTAGCTGCTCGATTTGACCACAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtaggttttgcatgggctcatggttcagacacatccaggctggtggggag #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATC-AAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTCAAACAACTATCTGCCAGCAGTCAAGATATGA-TGACCATGAACATCCAGAGaggtaggtgcatgtatgtgacatatagcaggtgtcccctccttatggtccag Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATC-AAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTCAAACAACTATCTGCCAGCAGTCAAGATATGA-TGACCATGAACATCCAGAGaggtaggtgcatgtatgtgacatatagcagttaaacttttcttgcatcctag Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTCAAACAACTATCTGCCAGCAGTCAAGATATGATGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcaggtgtcccctccttatggtccag Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCA-TCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTCAAACAACTATCTGCCAGCAGTCAAGATATGA-TGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcaggtgtcccctccttatggtccag Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCA-TCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTCAAACAACTATCTGCCAGCAGTCAAGATATGA-TGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcaggtgtcccctccttatggtccag Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTCAAACAACTATCTGCCAGCAGTCAAGATATGATGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcaggtgtcccctccttatggtccag Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTCAAACAACTATCTGCCAGCAGTCAAGATATGATGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcaggtgtcccctccttatggtccag Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTCAAACAACTATCTGCCAGCAGTCAAGATATGATGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcaggtgtcccctccttatggtccag #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTG-TACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtaagtgcatgtatgtgacatatagcagttaaacttttcttgcatcctagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGCTATGCAAGCCTGAAGGAGCTGGCGGGAGAGCGGC-TCAGCGGCTGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagtctacagtctcacaaacaggaccaaaatgtgcgaggtgacaaagg Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTG-TACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtaggtgcatgtatgtgacatatagcagttaaacttttcttgcatcctagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGCTATGCAAGCCTGAAGGAGCTGGCGGGAGAGCGG-CTCAGCGGCTGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagtctacagtctcacaaacaggaccaaaatgtgcgaggtgacaaagg Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtaagtgcatgtatgtgacatatagcagttaaacttttcttgcatcctagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGCTATGCAAGCCTGAAGGAGCTGGCGGGAGAGCGGCTCAGCGGCTGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagtctacagtctcacaaacaggaccaaaatgtgcgaggtgacaaagg Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTG-TACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtaagtgcatgtatgtgacatatagcagttaaacttttcttgcatcctagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGCTATGCAAGCCTGAAGGAGCTGGCGGGAGAGCGGCTC-AGCGGCTGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagtctacagtctcacaaacaggaccaaaatgtgcgaggtgacaaagg Alignment from Pairagon CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTG-TACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtaagtgcatgtatgtgacatatagcagttaaacttttcttgcatcctagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGCTATGCAAGCCTGAAGGAGCTGGCGGGAGAGCGGCTC-AGCGGCTGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagtctacagtctcacaaacaggaccaaaatgtgcgaggtgacaaagg Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtaagtgcatgtatgtgacatatagcagttaaacttttcttgcatcctagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGCTATGCAAGCCTGAAGGAGCTGGCGGGAGAGCGGCTCAGCGGCTGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagtctacagtctcacaaacaggaccaaaatgtgcgaggtgacaaagg Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtaagtgcatgtatgtgacatatagcagttaaacttttcttgcatcctagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGCTATGCAAGCCTGAAGGAGCTGGCGGGAGAGCGGCTCAGCGGCTGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagtctacagtctcacaaacaggaccaaaatgtgcgaggtgacaaagg Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtaagtgcatgtatgtgacatatagcagttaaacttttcttgcatcctagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGCTATGCAAGCCTGAAGGAGCTGGCGGGAGAGCGGCTCAGCGGCTGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagtctacagtctcacaaacaggaccaaaatgtgcgaggtgacaaagg #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTG-TGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTggtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from CESAR ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTG-TGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTggtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTcCAGCTACAGTCCCGGCGCCAGGAGACTGT-GACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTG-TGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Pairagon ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTG-TGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG atccacgtcatcatggtcaagtcccaatatctcccttctttcttctttagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtagtttaattagcaatatcgcaggaggtaggggttattggagggtgtac #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGG-AGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagttTTGGAGGTGCTTGTATTCGGGCAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCC-GGCACCATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGG-AGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagttTTGGAGGTGCTTGTATTCGGGCAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCGG-CACCATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTT-GGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCgGGCAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCGGCA-CCATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAG-ATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGCAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAG-CCGGCACCATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGG-AGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGCAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCC-GGCACCATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTT-GGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAG--GAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGCAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCGGCA---CCATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTT-GGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAG--GAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGCAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCGGCA---CCATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from GeneWise ------GAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGCAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCGGCA-CCATTGGTGCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCT-AGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTCAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTC-TGACACTGCTTGGGATgggtaaacattgatatcaaatgctaacactggtaaatgaccctatgtctgtg Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCT-AGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTCAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAG-TTCTGACACTGCTTGGGATgggtaaacattgatatcaaatgctaacactggtaaatgaccctttagcatct Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCT-AGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTcAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCT-GACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctatgtctgtg Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCT-AGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTCAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTT-CTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctatgtctgtg Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCT-AGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTCAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTT-CTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctatgtctgtg Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTCAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctatgtctgtg Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTCAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctatgtctgtg Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCCATGGCTCAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgaccctatgtctgtg #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGT-TCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttactaatgttctttcttgcagaGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGACTCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGT-TGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTaggtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGT-TCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttactaatgttctttcttgcagaGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGACTCAGCTGCAACAGTACTAGCCTATGCTATGAAACAG-TTGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTaggtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGACTCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTTGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGT-TCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGACTCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGT-TGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCG-TTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGACTCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGT-TGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGACTCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTTGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGACTCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTTGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGACTCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTTGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTC-CTCTATCCAGACCATGtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from CESAR gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCT-CCTCTATCCAGACCATGtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGcACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCC-TCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCT-CCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Pairagon GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCT-CCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from GeneWise tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcggcttaagtgtgcacgtctggtggccaaagccgaatcttcaagcctcctctatccagaccatgtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGC-ACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagtTGCCACAGCTGCACCAGTTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTG-TACCCATGTATACCTGGATGGGGACgggtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from CESAR tTCCCACAGCTGC-ACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg aagagttaggttgaggctccaatgtgctggtgaaatggcttcctttgtagttgccacagcTGCACCAGTTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGT-GTACCCATGTATACCTGGATGGGGACgggtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Spaln_aa2Genome ------AGCAGTTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagTTGCCACAGCTGCACCAGTTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGT-ACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Spaln_nt2Genome TTCCCACAGCTGCACC----------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagTTGCCACAGCTGCACCAGTTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTG-TACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Pairagon TTCCCACAGCTGCACC----------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagTTGCCACAGCTGCACCAGTTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTG-TACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagttgccacagCTGCACCAGTTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGTACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Exonerate_coding2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagttgccacagCTGCACCAGTTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGTACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from GeneWise TTCCCACAGCTGCACCCTG------------GGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagTTGCCACAGCTGCACCAGTTGCCACACTAGGTCTTGTCCTGCCCCTCTG---GAGTGTACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCT------------GAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGT-GACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------------------CCCGAGGTTCAGCAAATAATGAGTCGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAA-AGACCCCCAGGCTTTGAGTgagtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from CESAR GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC------------CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGT-GACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------------------CCCGAGGTTCAGCAAATAATGAGTCGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAA-AGACCCCCAGGCTTTGAGTgagtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGT-GACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------CCCGAGGTTCAGCAAATAATGAGTcGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGAC-CCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGAC-CCTGAGGTGCAGCAGATAATGAGT-GACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGA----CAGCCCTGAGGAA---GTGACACCCGAGGTTCAGCAAATAATGAGTCGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAA-GACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Pairagon GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAG------------ACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGT-GACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------------------CCCGAGGTTCAGCAAATAATGAGTCGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAA-GACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGT-GACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAA------GTGACACCCGAGGTTCAGCAAATAATGAGTCGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGACCCCCAGGCTTTGAGTGAGtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGT-GACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAA------GTGACACCCGAGGTTCAGCAAATAATGAGTCGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGACCCCCAGGCTTTGAGTGAGtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------CCCGAGGTTCAGCAAATAATGAGTCGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagacAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAACGCCATGAAGGACTATACAAAAGCGATGCAC------C-AAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagacAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAACGCCATGAAGGACTATACAAAAGCGATG------CACC-AAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAACGCCATGAAGGACTATACAAAAGC---GATGCA---CCAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAACGCCATGAAGGACTATACAAAAGCGATGCA-------CCAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAACGCCATGAAGGACTATACAAAAGCGATGCA-------CCAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAACGCCATGAAGGACTATACAAAAGC---GATGCA---CCAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAACGCCATGAAGGACTATACAAAAGC---GATGCA---CCAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAACGCCATGAAGGACTATACAAAAGC---GATGCA---CCAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat #### Stip1_ID1993_8 --> 1 - 0 Original Alignment aGCTTATGCCCGAATT-GGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagaGCTTATGCCCGAATTCGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGG-TGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from CESAR aGCTTATGCCCGAATT-GGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagaGCTTATGCCCGAATTCGGCAATTCCTATTTCAAAGAAGAAAAGTACAAG-GTGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Spaln_aa2Genome AGCTTATGCCCGAATT-GGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTcGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGT-GCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Spaln_nt2Genome AGCTTATGCCCGAATT-GGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTCGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGG-TGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Pairagon AGCTTATGCCCGAATT-GGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTCGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGG-TGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Exonerate_protein2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTCGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGTGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from Exonerate_coding2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTCGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGTGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg Alignment from GeneWise AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttgagccccgggtcttgttcctagAGCTTATGCCCGAATTCGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGTGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaaatatgaaaagattgtgccttccccaaaaccttatgctcaatgctgg #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAACACAAGCAAACCAGCTCTGCATGCAGCCCGTC-GTGCAGTGAACTTACCCTTATGGCTaggtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from CESAR AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAACACAAGCAAACCAGCTCTGCATGCAGCCCGT-CGTGCAGTGAACTTACCCTTATGGCTaggtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Spaln_aa2Genome AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAAcACAAGCAAACCAGCTCTGCATGCAGCCCGTCG-TGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Spaln_nt2Genome AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAACACAAGCAAACCAGCTCTGCATGCAGCCCGTC-GTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Pairagon AATGGAATCCAA-ACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAACACAAGCAAACCAGCTCTGCATGCAGCCCGTC-GTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAACACAAGCAAACCAGCTCTGCATGCAGCCCGTCGTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaggcaagggtgactagattaccttctcactcttctttttcagAATGGAATCCAACACAAGCAAACCAGCTCTGCATGCAGCCCGTCGTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagg Alignment from GeneWise T gaataactaggcaagggtgactagattaccttctcactcttctttttcagaatggaatccaacacaagcaaaccagctctgcatgcagcccgtcgtgcagtgaacttacccttatggctaggtaggctgtaggagttttggtgggcggactgttttttgaaatttgtaagG #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGG-AACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGT-TGCCTTGCCACTAGCACCCAACAACCTTggtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from CESAR AATCTGAAACAGCAGAGG-AACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGTG-TTGCCTTGCCACTAGCACCCAACAACCTTggtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTTGCCTTGCCACTAGCACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGG-AACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGT-TGCCTTGCCACTAGCACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Pairagon AATCTGAAACAGCAGAGG-AACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTT-GCCTTGCCACTAGCACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTTGCCTTGCCACTAGCACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTTGCCTTGCCACTAGCACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG cacaaatattctcagggcctcgactgtgcatctccccatcgtttttgcagAATTTGAAACAGCAGAGGCAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTTGCCTTGCCACTAGCACCCAACAACCTTGgtgagattgcattaactatgtgtaggggatatgatctgacctggttcctc #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTC-TTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGC-GCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTC-TTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGG-CGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatac Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTC-TTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCcTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCG-CTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCT-TCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGC-GCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGT-CTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGC-GCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACTCGTGGGGCTT-TGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACTCGTGGGGCT-TTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAG-CCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACTCGTGGGGCTT-TGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAG-CCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACTCGTGGGGCTT-TGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCT--TCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTT---GTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCT--TCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTT---GTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcatagatcagtagaggccttgatttttttatctgttcttccagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTTGTGCAGCTGGTATTTGGCTTTGTAgtaaggctgacctatgaaatggcgacctatctgtgctttcagtccctcac #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctaggcTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACAT-TCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from CESAR gcTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctaggcTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACAT-TCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGcCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATT-CCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGC-TGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCC-ACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Pairagon GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATT-CCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACA--TTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATT---CCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTG---CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCCTGTATAT--GGCCTTCATGACCATCATGATCAAGGTGCACACATT-CCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from GeneWise CATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctaggcttcatcaagGTGC------TGCCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATT-CCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTC-CTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaacagtgacctactgacctgcctactgttccttttgtagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTTGCGGGCATCATTGCCAGCCCAGTTACCACCAC-TCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATagtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTC-CTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaacagtgacctactgacctgcctactgttccttttgtagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTTGCGGGCATCATTGCCAGCCCAGTTACCACCA-CTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATagtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTTGCGGGCATCATTGCCAGCCCAGTTACCACCACTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCT-GCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTTGCGGGCATCATTGCCAGCCCAGTTACCACCA-CTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCC---GCCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATG-TCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTTGCGGGCATCATTGCCAGCCCAGTTACCACCA-CTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCC---GCCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTTGCGGGCATCATTGCCAGCCCAGTTACCACCACTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTTGCGGGCATCATTGCCAGCCCAGTTACCACCACTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTTGCGGGCATCATTGCCAGCCCAGTTACCACCACTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGC-ATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGC-TGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAggtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGC-ATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTC-CGCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAggtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGG-CATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCG-CTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGG-CATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCC-GCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtggtactgacagctgagtcttgtccttaattactatttctccttgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACCAGTACAGgtgagtctgtgtaagccagagtgattgcgaagggtaaaggtggtcgacag #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTA-ACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagccTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTACACTCCAGAGGAGTTGTGTGCACTAGAAGGTC-TGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTA-ACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagccTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTACACTCCAGAGGAGTTGTGTGCACTAGAAGGT-CTGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTACACTCCAGAGGAGTTGTGTGCACTAGAAGGTCTGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTA-ACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTACACTCCAGAGGAGTTGTGTGCACTAGAAGGTC-TGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTA-ACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTACACTCCAGAGGAGTTGTGTGCACTAGAAGGTC-TGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTACACTCCAGAGGAGTTGTGTGCACTAGAAGGTCTGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTACACTCCAGAGGAGTTGTGTGCACTAGAAGGTCTGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTACACTCCAGAGGAGTTGTGTGCACTAGAAGGTCTGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCC-AGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttaggCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCC-ACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCC-AGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttaggCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCAT-CCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCC-CAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCAT-CCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCC-CAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCAT-CCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTA-CTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg gcatgctattacactacaattccactctgcgaatcttcctcttcctgtagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACCTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAG-ATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCATCAggtaagtcattgtaggtcctcatagtagtgaattcataatgaatgcaaata Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTA-CTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg gcatgctattacactacaattccactctgcgaatcttcctcttcctgtagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACCTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAG-ATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCATCAggtaagtcattgtaggtcctcatagtagtgaattcataatgaatgcaaata Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG gcatgctattacactacaattccactctgcgaatcttcctcttcctgtagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACCTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCATCAGgtaagtcattgtaggtcctcatagtagtgaattcataatgaatgcaaata Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTA-CTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG gcatgctattacactacaattccactctgcgaatcttcctcttcctgtagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACCTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAG-ATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCATCAGgtaagtcattgtaggtcctcatagtagtgaattcataatgaatgcaaata Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTA-CTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG gcatgctattacactacaattccactctgcgaatcttcctcttcctgtagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACCTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAG-ATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCATCAGgtaagtcattgtaggtcctcatagtagtgaattcataatgaatgcaaata Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTA-CTTCTTTGGGATATTGGACACGGCTTGATGGTTGGA--GAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG gcatgctattacactacaattccactctgcgaatcttcctcttcctgtagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACCTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGA---TTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCATCAGgtaagtcattgtaggtcctcatagtagtgaattcataatgaatgcaaata Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTA-CTTCTTTGGGATATTGGACACGGCTTGATGGTTGGA--GAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG gcatgctattacactacaattccactctgcgaatcttcctcttcctgtagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACCTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGA---TTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCATCAGgtaagtcattgtaggtcctcatagtagtgaattcataatgaatgcaaata Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGA-GTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG gcatgctattacactacaattccactctgcgaatcttcctcttcctgtagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACCTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGA-TTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCATCAGgtaagtcattgtaggtcctcatagtagtgaattcataatgaatgcaaata #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATG-GAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtaagcaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGCGAGGCCACTGGCAGGGACTTGCACCAAC-GTTTCCTTTGCATGAGATGTTTGTGTTGCCTCAAGGACATgggtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from CESAR TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATG-GAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtaaggaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGCGAGGCCACTGGCAGGGACTTGCACCAA-CGTTTCCTTTGCATGAGATGTTTGTGTTGCCTCAAGGACATgggtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Spaln_aa2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagcaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGCGAGGCCACTGGCAGGGACTTGCACCAACGTTTCCTTTGCATGAGATGTTTGTGTTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Spaln_nt2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATG-GAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagcaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGCGAGGCCACTGGCAGGGACTTGCACCAAC-GTTTCCTTTGCATGAGATGTTTGTGTTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Pairagon TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATG-GAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagcaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGCGAGGCCACTGGCAGGGACTTGCACCAAC-GTTTCCTTTGCATGAGATGTTTGTGTTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Exonerate_protein2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagcaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGCGAGGCCACTGGCAGGGACTTGCACCAACGTTTCCTTTGCATGAGATGTTTGTGTTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from Exonerate_coding2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagcaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGCGAGGCCACTGGCAGGGACTTGCACCAACGTTTCCTTTGCATGAGATGTTTGTGTTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata Alignment from GeneWise TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagcaagctaggaagtgccctcttatatctttttactcttagGAACTGGCATCAGCCCCTGGGGACCCACAGTGGATGCGAGGCCACTGGCAGGGACTTGCACCAACGTTTCCTTTGCATGAGATGTTTGTGTTGCCTCAAGGACATGGgtgagagttcaggaaggagtctattcagaccacaatctccattgtccata #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCC-TCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCCACCGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTGTG-CGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccggagaagtgatggtcctttcagGAACTG Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCCACCGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTGT-GCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgccctcttatatctttttactcttagGAACTG Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCCACCGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTGTGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccggagaagtgatggtcctttcagGAACTG Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCAT-CCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCCACCGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTGTGC-GCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccggagaagtgatggtcctttcagGAACTG Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCA-TCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCCACCGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTGT-GCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccggagaagtgatggtcctttcagGAACTG Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTG--TGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCCACCGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTGTGC---GCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccggagaagtgatggtcctttcagGAACTG Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTG--TGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCCACCGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTGTGC---GCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccggagaagtgatggtcctttcagGAACTG Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGG---CCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG catcagagggtgagagcagatgaaccccctcttccttccttcctccacagGTAAAGATACAATGCCACAAGGGCATTCCCCACCGTCTTGCGTGCCCGGTGCTGGCCCCTCCTGTGTGC---GCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaagtgcccggagaagtgatggtcctttcagGAACTG #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTG-TGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagtgacaggcattcccaagttttcttctccactgttttgcagagCTGTCTGAGGTCCTTCTGGGCAATGGTGATGCACATAGGCCTTGGCATGG-CCGAGAGATTGGGGTGGCGGCTGTAGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCAATTCTGTTAGTAATGGAGGGTCTCTTAGCCTTCTTACATGCTCTGCGGTTGCATtggtgggtacctatttagtgggatttggcagggaacatgggtggatttgtcc Alignment from CESAR agCTGTCTGAGGTCCTG-TGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagtgacaggcattcccaagttttcttctccactgttttgcagagCTGTCTGAGGTCCTTCTGGGCAATGGTGATGCACATAGGCCTTGGCA-TGGCCGAGAGATTGGGGTGGCGGCTGTAGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCAATTCTGTTAGTAATGGAGGGTCTCTTAGCCTTCTTACATGCTCTGCGGTTGCATtggtgggtacctatttagtgggatttggcagggaacatgggtggatttgtcc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTG-TGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattcccaagttttcttctccactgttttgcagAGCTGTCTGAGGTCCTTcTGGGCAATGGTGATGCACATAGGCCTTGGCAT-GGCCGAGAGATTGGGGTGGCGGCTGTAGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCAATTCTGTTAGTAATGGAGGGTCTCTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgggtacctatttagtgggatttggcagggaacatgggtggatttgtcc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTG-TGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattcccaagttttcttctccactgttttgcagAGCTGTCTGAGGTCCTTCTGGGCAATGGTGATGCACATAGGCCTTGGCAT-GGCCGAGAGATTGGGGTGGCGGCTGTAGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCAATTCTGTTAGTAATGGAGGGTCTCTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgggtacctatttagtgggatttggcagggaacatgggtggatttgtcc Alignment from Pairagon AGCTGTCTGAGGTCC-TGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattcccaagttttcttctccactgttttgcagAGCTGTCTGAGGTCCTTCTGGGCAATGGTGATGCACATAGGCCTTGGCAT-GGCCGAGAGATTGGGGTGGCGGCTGTAGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCAATTCTGTTAGTAATGGAGGGTCTCTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgggtacctatttagtgggatttggcagggaacatgggtggatttgtcc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattcccaagttttcttctccactgttttgcagAGCTGTCTGAGGTCCTTCTGGGCAATGGTGATGCACATAGGCCTTGGCATGGCCGAGAGATTGGGGTGGCGGCTGTAGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCAATTCTGTTAGTAATGGAGGGTCTCTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgggtacctatttagtgggatttggcagggaacatgggtggatttgtcc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattcccaagttttcttctccactgttttgcagAGCTGTCTGAGGTCCTTCTGGGCAATGGTGATGCACATAGGCCTTGGCATGGCCGAGAGATTGGGGTGGCGGCTGTAGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCAATTCTGTTAGTAATGGAGGGTCTCTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgggtacctatttagtgggatttggcagggaacatgggtggatttgtcc Alignment from GeneWise ----CTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattcccaagttttcttctccactgttttgcagagctgtctgagGTCCTTCTGGGCAATGGTGATGCACATAGGCCTTGGCAT-GGCCGAGAGATTGGGGTGGCGGCTGTAGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCAATTCTGTTAGTAATGGAGGGTCTCTTAGCCTTCTTACATGCTCTGCGGTTGCATTGgtgggtacctatttagtgggatttggcagggaacatgggtggatttgtcc #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTG-GCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG tgcacaatgtaactccaattcaatgtgcctgttttttctttctcttaaagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTACGCTACTGTCCCTATTCTGCTGCTGGGCACAC-CTTATACCTCCTACGTGAGCACCGGCACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtatgtacataaggattgggctaagtggtgacacatgtaacctcttctcc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTG-GCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG tgcacaatgtaactccaattcaatgtgcctgttttttctttctcttaaagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTACGCTACTGTCCCTATTCTGCTGCTGGGCACAC-CTTATACCTCCTACGTGAGCACCGGCACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtatgtacataaggattgggctaagtggtgacacatgtaacctcttctcc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG tgcacaatgtaactccaattcaatgtgcctgttttttctttctcttaaagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTACGCTACTGTCCCTATTCTGCTGCTGGGCACACCTTATACCTCCTACGTGAGCACCGGCACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtatgtacataaggattgggctaagtggtgacacatgtaacctcttctcc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTG-GCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG tgcacaatgtaactccaattcaatgtgcctgttttttctttctcttaaagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTACGCTACTGTCCCTATTCTGCTGCTGGGCACACCT-TATACCTCCTACGTGAGCACCGGCACAGAAGAAACTCCCAAAGAAG---AGCAGGCCAACAGgtatgtacataaggattgggctaagtggtgacacatgtaacctcttctcc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTG-GCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG tgcacaatgtaactccaattcaatgtgcctgttttttctttctcttaaagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTACGCTACTGTCCCTATTCTGCTGCTGGGCACA-CCTTATACCTCCTACGTGAGCACCGGCACAGAAGAAACTCCCAAAGAAG---AGCAGGCCAACAGgtatgtacataaggattgggctaagtggtgacacatgtaacctcttctcc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG tgcacaatgtaactccaattcaatgtgcctgttttttctttctcttaaagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTACGCTACTGTCCCTATTCTGCTGCTGGGCACACCTTATACCTCCTACGTGAGCACCGGCACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtatgtacataaggattgggctaagtggtgacacatgtaacctcttctcc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG tgcacaatgtaactccaattcaatgtgcctgttttttctttctcttaaagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTACGCTACTGTCCCTATTCTGCTGCTGGGCACACCTTATACCTCCTACGTGAGCACCGGCACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtatgtacataaggattgggctaagtggtgacacatgtaacctcttctcc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG tgcacaatgtaactccaattcaatgtgcctgttttttctttctcttaaagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTACGCTACTGTCCCTATTCTGCTGCTGGGCACACCTTATACCTCCTACGTGAGCACCGGCACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtatgtacataaggattgggctaagtggtgacacatgtaacctcttctcc #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACG-AACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACACAACCACCTGAGCTTTCTCAACTCCTTCAAGATGA-GATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGgtgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACG-AACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACACAACCACCTGAGCTTTCTCAACTCCTTCAAGATGA-GATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGgtgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACG-AACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACAcAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAG-ATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACG-AACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACACAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACG-AACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACACAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACACAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACACAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagagtcaagcatgttgccaagtgttcagccttgctcttctgccacagCTCTGGAGTCTGGCCACACAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAGATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtgaggtaacgggtttatgcatgggtggtatgtgcccagtcttgcctcat #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTG-TCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagcGATGAGTATCTACTCCCAGCACTCGATGCTAACCTTGAACCCTA-CATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from CESAR tGACGAGTATCTG-TCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagcGATGAGTATCTACTCCCAGCACTCGATGCTAACCTTGAACCCT-ACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Spaln_aa2Genome TGACGAGTATCTG-TCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTAcTCCCAGCACTCGATGCTAACCTTGAACCCTAC-ATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Spaln_nt2Genome TGACGAGTATCTG-TCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTACTCCCAGCACTCGATGCTAACCTTGAACCCT-ACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTG-TCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG CAGGTTACCTGACGTGAAGTATAGCTTAGTTTTTCTTACATATCTTTCAGCGATGAGTATCTACTCCCAGCACTCGATGCTAACCTTGAACCCT-ACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTACTCCCAGCACTCGATGCTAACCTTGAACCCTACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTACTCCCAGCACTCGATGCTAACCTTGAACCCTACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTACTCCCAGCACTCGATGCTAACCTTGAACCCTACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATAC-CTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTG-CTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGctgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATAC-CTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACT-GCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGctgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACC-TACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACT-GCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATA-CCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACT-GCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTGTGAGCCTATGATGGTTGGTACGTGTCCAGGTTACCTGACGTGAAGTATA Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATAC-CTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACT--GGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGC---TTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATAC-CTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACT--GGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGC---TTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCA-GTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatggaatctgaagtagcactacctctcttccccagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTCGTCTACCTAACCCTCAATTCATGCAGTGTGAACACCACAC-CAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGGGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaggcgtctagcgtcctattggagtacccattaagcaagacagatacca Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCA-GTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagtgcctatggaatctgaagtagcactacctctcttccccagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTCGTCTACCTAACCCTCAATTCATGCAGTGTGAACACCACA-CCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGGGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaggcgtctagcgtcctattggagtacccattaagcaagacagatacca Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatggaatctgaagtagcactacctctcttccccagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTCGTCTACCTAACCCTCAATTCATGCAGTGTGAACACCACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGGGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaggcgtctagcgtcctattggagtacccattaagcaagacagatacca Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCA-GTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatggaatctgaagtagcactacctctcttccccagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTCGTCTACCTAACCCTCAATTCATGCAGTGTGAACACCACAC-CAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGGGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaggcgtctagcgtcctattggagtacccattaagcaagacagatacca Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGC-AGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatggaatctgaagtagcactacctctcttccccagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTCGTCTACCTAACCCTCAATTCATGCAGTGTGAACACCACAC-CAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGGGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaggcgtctagcgtcctattggagtacccattaagcaagacagatacca Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCA-GTGTACCTGACCCTCAACCAGTGCAGTGTGAACACC--ACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatggaatctgaagtagcactacctctcttccccagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTCGTCTACCTAACCCTCAATTCATGCAGTGTGAACACCACACC---AAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGGGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaggcgtctagcgtcctattggagtacccattaagcaagacagatacca Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCA-GTGTACCTGACCCTCAACCAGTGCAGTGTGAACACC--ACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatggaatctgaagtagcactacctctcttccccagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTCGTCTACCTAACCCTCAATTCATGCAGTGTGAACACCACACC---AAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGGGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaggcgtctagcgtcctattggagtacccattaagcaagacagatacca Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACC------CTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatggaatctgaagtagcactacctctcttccccagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTCGTCTACCTAACCCTCAATTCATGCAGTGTGAACACCACACC------AAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGGGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaggcgtctagcgtcctattggagtacccattaagcaagacagatacca #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGACCCTTCTCT-GAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCACGAGACAACACCCCTGCTTCCAGGCACCCGGG-TCCACATTCTGACCTGAAAGTTaagtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCT-GAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCACGAGACAACACCCCTGCTTCCAGGCACCC-GGGTCCACATTCTGACCTGAAAGTTaagtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCACGAGACAACACCCCTGCTTCCAGGCACCCGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCT-GAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCACGAGACAACACCCCTGCTTCCAGGCACCC-GGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCTTCTC-TGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCACGAGACAACACCCCTGCTTCCAGGCACCC-GGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCACGAGACAACACCCCTGCTTCCAGGCACCCGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCACGAGACAACACCCCTGCTTCCAGGCACCCGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTGAAGGCCCTCTCTCACGAGACAACACCCCTGCTTCCAGGCACCCGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAAT-CAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcttccagtcctgttttgcttttcctacaacagccTTCTTGAAAGAAGAAGTGCCATGGGCAAGTCTAACCCTTGCCCCACCTGAGGGGACACTACCAGCACCACCTCCGAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCCAGGAGGCACTGCAGGCCCAGCTGCACCACCTACGACTAT-CTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtaagttcctagccagagcaaaaagcaggcataggacctcacagtgtaca Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAAT-CAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcttccagtcctgttttgcttttcctacaacagccTTCTTGAAAGAAGAAGTGCCATGGGCAAGTCTAACCCTTGCCCCACCTGAGGGGACACTACCAGCACCACCTCCGAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCCAGGAGGCACTGCAGGCCCAGCTGCACCACCTACGACTA-TCTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtaagttcctagccagagcaaaaagcaggcataggacctcacagtgtaca Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcttccagtcctgttttgcttttcctacaacagCCTTCTTGAAAGAAGAAGTGCCATGGGCAAGTCTAACCCTTGCCCCACCTGAGGGGACACTACCAGCACCACCTCCGAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCCAGGAGGCACTGCAGGCCCAGCTGCACCACCTACGACTATCTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtaagttcctagccagagcaaaaagcaggcataggacctcacagtgtaca Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATC-AGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcttccagtcctgttttgcttttcctacaacagCCTTCTTGAAAGAAGAAGTGCCATGGGCAAGTCTAACCCTTGCCCCACCTGAGGGGACACTACCAGCACCACCTCCGAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCCAGGAGGCACTGCAGGCCCAGCTGCACCACCTACGAC-TATCTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtaagttcctagccagagcaaaaagcaggcataggacctcacagtgtaca Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAAT-CAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcttccagtcctgttttgcttttcctacaacagCCTTCTTGAAAGAAGAAGTGCCATGGGCAAGTCTAACCCTTGCCCCACCTGAGGGGACACTACCAGCACCACCTCCGAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCCAGGAGGCACTGCAGGCCCAGCTGCACCACCTACGACTAT-CTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtaagttcctagccagagcaaaaagcaggcataggacctcacagtgtaca Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcttccagtcctgttttgcttttcctacaacagCCTTCTTGAAAGAAGAAGTGCCATGGGCAAGTCTAACCCTTGCCCCACCTGAGGGGACACTACCAGCACCACCTCCGAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCCAGGAGGCACTGCAGGCCCAGCTGCACCACCTACGACTATCTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtaagttcctagccagagcaaaaagcaggcataggacctcacagtgtaca Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcttccagtcctgttttgcttttcctacaacagCCTTCTTGAAAGAAGAAGTGCCATGGGCAAGTCTAACCCTTGCCCCACCTGAGGGGACACTACCAGCACCACCTCCGAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCCAGGAGGCACTGCAGGCCCAGCTGCACCACCTACGACTATCTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtaagttcctagccagagcaaaaagcaggcataggacctcacagtgtaca Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcttccagtcctgttttgcttttcctacaacagCCTTCTTGAAAGAAGAAGTGCCATGGGCAAGTCTAACCCTTGCCCCACCTGAGGGGACACTACCAGCACCACCTCCGAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCCAGGAGGCACTGCAGGCCCAGCTGCACCACCTACGACTATCTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtaagttcctagccagagcaaaaagcaggcataggacctcacagtgtaca #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCC-GTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTCGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTGC-GCACTGTGAGGAACTGGACAAGACATTTagtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from CESAR CTCAACGAATCC-GTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTCGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTGC-GCACTGTGAGGAACTGGACAAGACATTTagtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Spaln_aa2Genome CTCAACGAATCC-GTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTcGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTGCGCAC-TGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Spaln_nt2Genome CTCAACGAATC-CGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTCGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTGC-GCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Pairagon CTCAACGAATC-CGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTCGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTGC-GCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTCGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTGCGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTCGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTGCGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcacataaagacggtttgttgttttcatttcaaagTTCAATGAGTCTCGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTGCGCACTGTGAGGAACTGGACAAGACATTTAgtaacttagactcagcagatttgggctgaaggagagtggtccatttaccc #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTG-ACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGCACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAAC-TGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAggtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from CESAR GCTGGGGATCCCATCCTG-ACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGCACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAA-CTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAggtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTG-ACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGcACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACT-GCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTG-ACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGCACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCA-ACTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Pairagon GCTGGGGATCCCATCCTG-ACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGCACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAA-CTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTG-ACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAG--CCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGCACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACT---GCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTG-ACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAG--CCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGCACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACT---GCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGCACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt #### Tjp2_ID5278_9 --> 1 - 1 Original Alignment cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATG-GGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg gattaagattttgttattccataaaccatgttaaatttgtatactcccagcTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGCGGTGCCACACCCACACCATTCAAGTATACAGGCGACCTCA-GGCTGCTGGAGTTACG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAggtaagttgttatgctattcttttgcatgtatgttatacacaggctggtta Alignment from CESAR cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATG-GGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg gattaagattttgttattccataaaccatgttaaatttgtatactcccagcTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGCGGTGCCACACCCACACCATTCAAGTATACAGGCGACCTC-AGGCTGCTGGAGTTACG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAggtaagttgttatgctattcttttgcatgtatgttatacacaggctggtta Alignment from Spaln_aa2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATG-GGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccataaaccatgttaaatttgtatactcccagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGcGGTGCCACACCCACACCATTCAAGTATACAGGCGACCTCAG-GCTGCTGGAGTTACG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaagttgttatgctattcttttgcatgtatgttatacacaggctggtta Alignment from Spaln_nt2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATG-GGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccataaaccatgttaaatttgtatactcccagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGCGGTGCCACACCCACACCATTCAAGTATACAGGCGACCTCA-GGCTGCTGGAGTTAC---GGCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaagttgttatgctattcttttgcatgtatgttatacacaggctggtta Alignment from Pairagon CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATG-GGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccataaaccatgttaaatttgtatactcccagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGCGGTGCCACACCCACACCATTCAAGTATACAGGCGACCTCA-GGCTGCTGGAGTTAC---GGCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaagttgttatgctattcttttgcatgtatgttatacacaggctggtta Alignment from Exonerate_protein2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATG-GGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATC--ACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccataaaccatgttaaatttgtatactcccagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGCGGTGCCACACCCACACCATTCAAGTATACAGGCGACCTCAG---GCTGCTGGAGTTACG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaagttgttatgctattcttttgcatgtatgttatacacaggctggtta Alignment from Exonerate_coding2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATG-GGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATC--ACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccataaaccatgttaaatttgtatactcccagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGCGGTGCCACACCCACACCATTCAAGTATACAGGCGACCTCAG---GCTGCTGGAGTTACG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaagttgttatgctattcttttgcatgtatgttatacacaggctggtta Alignment from GeneWise CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccataaaccatgttaaatttgtatactcccagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGCGGTGCCACACCCACACCATTCAAGTATACAGGCGACCTCAGGCTGCTGGAGTTACG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaagttgttatgctattcttttgcatgtatgttatacacaggctggtta #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCA-TATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagcaTCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCACTATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGA-TGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCA-TATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagcaTCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCACTATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTA-TGATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCA-TATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCAcTATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAT-GGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCA-TATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCACTATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATG-ATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCA-TATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCACTATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATG-ATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCA-TATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATG--AACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCACTATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAT---GGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCA-TATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATG--AACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCACTATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAT---GGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGT-CCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG aaccaactaaggaaggtgtgactacattccaccaactatgtccttcctagCATCCAGCCTAAGGACCCCAGTAGCGGTACCTTGTCCACTATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAT-GGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaggatttacatacatataagtgtgttagaatgcaaagtaattgcattt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGA-CACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaagtgaacctgagggcctgtagcatctaccctgcttctctttcaggtCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTAGTGTCTGGGTGGTGGGGTATGGTACAGCCATCCCAACTACCTAGGAGACCTCATCATGG-TCTTGCTTGGTCCTTGCCCTGTggtacttaggtgaggggagtgaggaccatatacctgctgtactgagatccc Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGA-CACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaagtgaacctgagggcctgtagcatctaccctgcttctctttcaggtCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTAGTGTCTGGGTGGTGGGGTATGGTACAGCCATCCCAACTACCTAGGAGACCTCATCATG-GTCTTGCTTGGTCCTTGCCCTGTggtacttaggtgaggggagtgaggaccatatacctgctgtactgagatccc Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagcatctaccctgcttctctttcagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTAGTGTCTGGGTGGTGGGGTATGGTACAGCCATCCCAACTACCTAGGAGACCTCATCATGGTCTTGCTTGGTCCTTGCCCTGTGgtacttaggtgaggggagtgaggaccatatacctgctgtactgagatccc Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTC-GACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagcatctaccctgcttctctttcagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTAGTGTCTGGGTGGTGGGGTATGGTACAGCCATCCCAACTACCTAGGAGACCTCATCATGG-TCTTGCTTGGTCCTTGCCCTGTGgtacttaggtgaggggagtgaggaccatatacctgctgtactgagatccc Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTC-GACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagcatctaccctgcttctctttcagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTAGTGTCTGGGTGGTGGGGTATGGTACAGCCATCCCAACTACCTAGGAGACCTCATCATGG-TCTTGCTTGGTCCTTGCCCTGTGgtacttaggtgaggggagtgaggaccatatacctgctgtactgagatccc Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGA-CACCCCAACTACCTGGGAGATCTCATCATG--GCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagcatctaccctgcttctctttcagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTAGTGTCTGGGTGGTGGGGTATGGTACAGCCATCCCAACTACCTAGGAGACCTCATCATGGT---CTTGCTTGGTCCTTGCCCTGTGgtacttaggtgaggggagtgaggaccatatacctgctgtactgagatccc Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGA-CACCCCAACTACCTGGGAGATCTCATCATG--GCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagcatctaccctgcttctctttcagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTAGTGTCTGGGTGGTGGGGTATGGTACAGCCATCCCAACTACCTAGGAGACCTCATCATGGT---CTTGCTTGGTCCTTGCCCTGTGgtacttaggtgaggggagtgaggaccatatacctgctgtactgagatccc Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaagtgaacctgagggcctgtagcatctaccctgcttctctttcagGTCTAGACACGATCCCCACTGCCACAGGGAGACATCTGCTAGTGTCTGGGTGGTGGGGTATGGTACAGCCATCCCAACTACCTAGGAGACCTCATCATGGTCTTGCTTGGTCCTTGCCCTGTGgtacttaggtgaggggagtgaggaccatatacctgctgtactgagatccc #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGAT-GGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtactatgtcaacgtgtgcaaattttatttgcagGAGTCTGTCCTCACCACCATGGACATCATACATGATCGGTTTTGGCTTCATGCTTGTCTTTGGAGATT-AGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGggtgagtattagaaaccctcaatgccctatccccctccgtccatgatgttg Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGAT-GGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtactatgtcaacgtgtgcaaattttatttgcagGAGTCTGTCCTCACCACCATGGACATCATACATGATCGGTTTTGGCTTCATGCTTGTCTTTGGAG-ATTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGggtgagtattagaaaccctcaatgccctatccccctccgtccatgatgttg Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactatgtcaacgtgtgcaaattttatttgcagGAGTCTGTCCTCACCACCATGGACATCATACATGATCGGTTTTGGCTTCATGCTTGTCTTTGGAGATTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagtattagaaaccctcaatgccctatccccctccgtccatgatgttg Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGAT-GGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactatgtcaacgtgtgcaaattttatttgcagGAGTCTGTCCTCACCACCATGGACATCATACATGATCGGTTTTGGCTTCATGCTTGTCTTTGGAGAT-TAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagtattagaaaccctcaatgccctatccccctccgtccatgatgttg Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGAT-GGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactatgtcaacgtgtgcaaattttatttgcagGAGTCTGTCCTCACCACCATGGACATCATACATGATCGGTTTTGGCTTCATGCTTGTCTTTGGAGAT-TAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagtattagaaaccctcaatgccctatccccctccgtccatgatgttg Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactatgtcaacgtgtgcaaattttatttgcagGAGTCTGTCCTCACCACCATGGACATCATACATGATCGGTTTTGGCTTCATGCTTGTCTTTGGAGATTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagtattagaaaccctcaatgccctatccccctccgtccatgatgttg Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactatgtcaacgtgtgcaaattttatttgcagGAGTCTGTCCTCACCACCATGGACATCATACATGATCGGTTTTGGCTTCATGCTTGTCTTTGGAGATTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagtattagaaaccctcaatgccctatccccctccgtccatgatgttg Alignment from GeneWise ---------------------------------------------------GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG TGTGAGGACATCAACTGTACTATGTCAACGTGTGCAAATTTTATTTGCAG-GAGTCTGTCCTCACCACCATGGACATCATACATGATCGGTTTTGGCTTCATGCTTGTCTTTGGAGATTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagtattagaaaccctcaatgccctatccccctccgtccatgatgttg #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTG-GGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtatactaaccccaagcagcctctgactttctccctaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTGTCAGTGGGGCTCCCCCTGGGGG-ACTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtaaggagggtcccaaccaggtctcagcaggtgagggtgcaaggatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTG-GGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtatactaaccccaagcagcctctgactttctccctaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTGTCAGTGGGGCTCCCCCTGGGG-GACTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtaaggagggtcccaaccaggtctcagcaggtgagggtgcaaggatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtatactaaccccaagcagcctctgactttctccctagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTGTCAGTGGGGCTCCCCCTGGGGGACTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaaggagggtcccaaccaggtctcagcaggtgagggtgcaaggatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGG-GTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtatactaaccccaagcagcctctgactttctccctagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTGTCAGTGGGGCTCCCCCTGGGGG-ACTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaaggagggtcccaaccaggtctcagcaggtgagggtgcaaggatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGG-GTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtatactaaccccaagcagcctctgactttctccctagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTGTCAGTGGGGCTCCCCCTGGGGG-ACTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaaggagggtcccaaccaggtctcagcaggtgagggtgcaaggatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtatactaaccccaagcagcctctgactttctccctagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTGTCAGTGGGGCTCCCCCTGGGGGACTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaaggagggtcccaaccaggtctcagcaggtgagggtgcaaggatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtatactaaccccaagcagcctctgactttctccctagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTGTCAGTGGGGCTCCCCCTGGGGGACTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaaggagggtcccaaccaggtctcagcaggtgagggtgcaaggatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtatactaaccccaagcagcctctgactttctccctagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTGTCAGTGGGGCTCCCCCTGGGGGACTACCTGGAATGCTCCTGCCATTGGCCTTTGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtaaggagggtcccaaccaggtctcagcaggtgagggtgcaaggatgcat #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCG-GCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCACGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCC-ATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCG-GCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCACGCTTATCTACCTGGGCTGGAGGAGCTATGGA-GCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCACGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCG-GCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCACGCTTATCTACCTGGGCTGGAGGAGCTATGGAG-CCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCG-GCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCACGCTTATCTACCTGGGCTGGAGGAGCTATGGAG-CCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCACGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCACGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaggtaatgcgttgaaccggtcagattccatctttttgtcttgttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCACGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGTCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaagtgatctgtcacatcatagggggcatatgctgtgatatgatccatg #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagcTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGC-TTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from CESAR cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagcTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGC-TTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Spaln_nt2Genome CTGCTCTGAAGC-CCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGC-TTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Pairagon CTGCTCTGAAGC-CCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAG-CTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Exonerate_protein2genome CTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG--TTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCT---TACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Exonerate_coding2genome CTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG--TTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCT---TACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca #### Tmem180_ID9862_4 --> 1 - 0 Original Alignment cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACC-TTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagtGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCCTTGGGGCAGTACCTCCGGCAACTGGCACACC-CCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from CESAR cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACC-TTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagtGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCCTTGGGGCAGTACCTCCGGCAACTGGCACAC-CCCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Spaln_aa2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCCTTGGGGCAGTACCTCCGGCAACTGGCACACCCCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Spaln_nt2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCAC-CTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCCTTGGGGCAGTACCTCCGGCAACTGGCACACC-CCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Pairagon CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCA-CCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCCTTGGGGCAGTACCTCCGGCAACTGGCACACC-CCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Exonerate_protein2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCCTTGGGGCAGTACCTCCGGCAACTGGCACACCCCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Exonerate_coding2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCCTTGGGGCAGTACCTCCGGCAACTGGCACACCCCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from GeneWise CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCCTTGGGGCAGTACCTCCGGCAACTGGCACACCCCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAG-ATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg taagctaaagcacctcatcttccagaactggactgatctgtgatttccaggACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGCATTGGCCACCTGAACTCCAATCTGTTTCTAAATG-GGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAggtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAG-ATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg taagttaaagcacctcatcttccagaactggactgatctgtgatttccaggACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGCATTGGCCACCTGAACTCCAATCTGTTTCTAAAT-GGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAggtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagctaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGCATTGGCCACCTGAACTCCAATCTGTTTCTAAATGGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAG-ATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagctaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGCATTGGCCACCTGAACTCCAATCTGTTTCTAAATG-GGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAG-ATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagctaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGCATTGGCCACCTGAACTCCAATCTGTTTCTAAATG-GGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagctaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGCATTGGCCACCTGAACTCCAATCTGTTTCTAAATGGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagctaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGCATTGGCCACCTGAACTCCAATCTGTTTCTAAATGGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from GeneWise GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagctaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGCATTGGCCACCTGAACTCCAATCTGTTTCTAAATGGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat #### Trpt1_ID1979_2 --> 0 - 1 Original Alignment GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg tgctggctactaatttttaataattttacttccctcttttcttttactagGACCGAAACGTGCAGCTGTCTAAACGCTCTGGCCTATGCACTTCGCCATGGAGGTTTGG-GCTGGGACTTCCCATGCAAGCTggtagccaaataagttgggactgcgagtccatcttgagcctccatcccttc Alignment from CESAR GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg tgctggctactaatttttaataattttacttccctcttttcttttactagGACCGAAACGTGCAGCTGTCTAAACGCTCTGGCCTATGCACTTCGCCATGGAGGTTTG-GGCTGGGACTTCCCATGCAAGCTggtagccaaataagttgggactgcgagtccatcttgagcctccatcccttc Alignment from Spaln_aa2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG tgctggctactaatttttaataattttacttccctcttttcttttactagGACCGAAACGTGCAGCTGTCTAAACGCTCTGGCCTATGCACTTCGCCATGGAGGTTTGGGCTGGGACTTCCCATGCAAGCTGgtagccaaataagttgggactgcgagtccatcttgagcctccatcccttc Alignment from Spaln_nt2Genome GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG tgctggctactaatttttaataattttacttccctcttttcttttactagGACCGAAACGTGCAGCTGTCTAAACGCTCTGGCCTATGCACTTCGCCATGGAGGTTTG-GGCTGGGACTTCCCATGCAAGCTGgtagccaaataagttgggactgcgagtccatcttgagcctccatcccttc Alignment from Pairagon GACCGAAATGTGCAGCTGTCTAAG-GCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG tgctggctactaatttttaataattttacttccctcttttcttttactagGACCGAAACGTGCAGCTGTCTAAACGCTCTGGCCTATGCACTTCGCCATGGAGGTTTG-GGCTGGGACTTCCCATGCAAGCTGgtagccaaataagttgggactgcgagtccatcttgagcctccatcccttc Alignment from Exonerate_protein2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG tgctggctactaatttttaataattttacttccctcttttcttttactagGACCGAAACGTGCAGCTGTCTAAACGCTCTGGCCTATGCACTTCGCCATGGAGGTTTGGGCTGGGACTTCCCATGCAAGCTGgtagccaaataagttgggactgcgagtccatcttgagcctccatcccttc Alignment from Exonerate_coding2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG tgctggctactaatttttaataattttacttccctcttttcttttactagGACCGAAACGTGCAGCTGTCTAAACGCTCTGGCCTATGCACTTCGCCATGGAGGTTTGGGCTGGGACTTCCCATGCAAGCTGgtagccaaataagttgggactgcgagtccatcttgagcctccatcccttc Alignment from GeneWise GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG tgctggctactaatttttaataattttacttccctcttttcttttactagGACCGAAACGTGCAGCTGTCTAAACGCTCTGGCCTATGCACTTCGCCATGGAGGTTTGGGCTGGGACTTCCCATGCAAGCTGgtagccaaataagttgggactgcgagtccatcttgagcctccatcccttc #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAG-ACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGCACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGC-CTCAGAGCAAGTTGGGCCTGAAggtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAG-ACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGCACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGC-CTCAGAGCAAGTTGGGCCTGAAggtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGCACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAG-ACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGCACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAG-CCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAG-ACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGCACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAG-CCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGCACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGCACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGCACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca #### Ubxn1_ID2444_8 --> 0 - 1 Original Alignment GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACT-TTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGATCCGGGAACAGCTGGCAGCTG-GAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGggtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from CESAR GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACT-TTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGATCCGGGAACAGCTGGCAGCT-GGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGggtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Spaln_aa2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGATCCGGGAACAGCTGGCAGCTGGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Spaln_nt2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACT-TTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGATCCGGGAACAGCTGGCAGCTG-GAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Pairagon GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACT-TTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGATCCGGGAACAGCTGGCAGCTG-GAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Exonerate_protein2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGATCCGGGAACAGCTGGCAGCTGGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Exonerate_coding2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGATCCGGGAACAGCTGGCAGCTGGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from GeneWise GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTCTTTCGGATCCGGGAACAGCTGGCAGCTGGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAG-CAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACCAACGCCCACCACGTGGACCCCACACGCCTTTTCTCC-GGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAG-CAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACCAACGCCCACCACGTGGACCCCACACGCCTTTTCTC-CGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACCAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGC-AGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACCAACGCCCACCACGTGGACCCCACACGCCTTTTCTCC-GGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAG-CAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACCAACGCCCACCACGTGGACCCCACACGCCTTTTCTCC-GGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACCAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACCAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACCAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCC-ATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCACATGATTTACTTCCTCAACAATTATTTGTATG-CTTGAACCATACGCTCATCAATGTACAGATATGTggtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCC-ATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCACATGATTTACTTCCTCAACAATTATTTGTAT-GCTTGAACCATACGCTCATCAATGTACAGATATGTggtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCC-ATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAcATGATTTACTTCCTCAACAATTATTTGTATGC-TTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCC-CATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCACATGATTTACTTCCTCAACAATTATTTGTATG-CTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCC-CATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCACATGATTTACTTCCTCAACAATTATTTGTATG-CTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCACATGATTTACTTCCTCAACAATTATTTGTATGCTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCACATGATTTACTTCCTCAACAATTATTTGTATGCTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCACATGATTTACTTCCTCAACAATTATTTGTATGCTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATC-CAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgatactcagctcttatcatttttgttttatttgttttaatacagATCCTCATGATCCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAAC-CAGCCAATGTGAATGCaggtatgggccagttttggtatccaaggtctagcatggggtggggctgcttg Alignment from CESAR ATCCTCATGATC-CAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgatactcagctcttatcatttttgttttatttgttttaatacagATCCTCATGATCCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAA-CCAGCCAATGTGAATGCaggtatgggccagttttggtatccaaggtctagcatggggtggggctgcttg Alignment from Spaln_aa2Genome ATCCTCATGATC-CAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgatactcagctcttatcatttttgttttatttgttttaatacagATCCTCATGATCcCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACC-AGCCAATGTGAATGCAGgtatgggccagttttggtatccaaggtctagcatggggtggggctgcttg Alignment from Spaln_nt2Genome ATCCTCATGATCC-AGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgatactcagctcttatcatttttgttttatttgttttaatacagATCCTCATGATCCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAAC-CAGCCAATGTGAATGCAGgtatgggccagttttggtatccaaggtctagcatggggtggggctgcttg Alignment from Pairagon ATCCTCATGAT-CCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgatactcagctcttatcatttttgttttatttgttttaatacagATCCTCATGATCCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAAC-CAGCCAATGTGAATGCAGgtatgggccagttttggtatccaaggtctagcatggggtggggctgcttg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgatactcagctcttatcatttttgttttatttgttttaatacagATCCTCATGATCCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCAGCCAATGTGAATGCAGgtatgggccagttttggtatccaaggtctagcatggggtggggctgcttg Alignment from Exonerate_coding2genome ATCCTCATGAT---CCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgatactcagctcttatcatttttgttttatttgttttaatacagATCCTCATG--ATCCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACC-AGCCAATGTGAATGCAGgtatgggccagttttggtatccaaggtctagcatggggtggggctgcttg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGC-- ggacctgatactcagctcttatcatttttgttttatttgttttaatacagATCCTCATGATCCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACCAGCCAATGTGAATGCAGgtatgggccagttttggtatccaaggtctagcatggggtggggctgcttg #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATC-TGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagatATTGATGAATGCCAAAACCCAGGGATCCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGT-TGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATC-TGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagatATTGATGAATGCCAAAACCCAGGGATCCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAG-TTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATC-TGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGT-TGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGAT-CTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGT-TGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAA-TACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAGCTATATCCAACTTGTAGAGCAATTGAGGAACACAG-AGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTaggtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAA-TACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAGCTATATCCAACTTGTAGAGCAATTGAGGAACACA-GAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTaggtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAGCTATATCCAACTTGTAGAGCAATTGAGGAACACAGAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAA-TACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAGCTATATCCAACTTGTAGAGCAATTGAGGAACACAG-AGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAA-TACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAGCTATATCCAACTTGTAGAGCAATTGAGGAACACAG-AGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAGCTATATCCAACTTGTAGAGCAATTGAGGAACACAGAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAGCTATATCCAACTTGTAGAGCAATTGAGGAACACAGAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg Alignment from GeneWise GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG atagcactttccaagcaagtaagttcttgaccttcccttcaccccaacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAGCTATATCCAACTTGTAGAGCAATTGAGGAACACAGAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTCTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagatacacctgcctccctgatgtctgggaagcgtgttaaacagtttg #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTG-CTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcataagtgtgaggagaaagtagcttaactttattgctttgactaactagacCTGGTCAAAAGCCGTCTCTATTGGCTGGACGCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTG-CCTCACTATATTTGAGgtaagtcgtatgcaatatgtgcatgtatgaacaagttctagtaaagagag Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTG-CTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcataagtgtgaggagaaagtagcttaactttattgctttgactaactagacCTGGTCAAAAGCCGTCTCTATTGGCTGGACGCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTG-CCTCACTATATTTGAGgtaagtcgtatgcaatatgtgcatgtatgaacaagttctagtaaagagag Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTG-CTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG taagtgtgaggagaaagtagcttaactttattgctttgactaacta gACCTGGTCAAAAGCCGTCTCTATTGGCTGGACGCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGcCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGC-CTCACTATATTTGAGgtaagtcgtatgcaatatgtgcatgtatgaacaagttctagtaaagagag Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGC-TCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcataagtgtgaggagaaagtagcttaactttattgctttgactaactagACCTGGTCAAAAGCCGTCTCTATTGGCTGGACGCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGC-CTCACTATATTTGAGgtaagtcgtatgcaatatgtgcatgtatgaacaagttctagtaaagagag Alignment from Pairagon ---------------------------------------------ACTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTG-CTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG GCATAAGTGTGAGGAGAAAGTAGCTTAACTTTATTGCTTTGACTAACTAGACCTGGTCAAAAGCCGTCTCTATTGGCTGGACGCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGC-CTCACTATATTTGAGgtaagtcgtatgcaatatgtgcatgtatgaacaagttctagtaaagagag Alignment from Exonerate_protein2genome TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcataagtgtgaggagaaagtagcttaactttattgctttgactaacTAGACCTGGTCAAAAGCCGTCTCTATTGGCTGGACGCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCTCACTATATTTGAGgtaagtcgtatgcaatatgtgcatgtatgaacaagttctagtaaagagag Alignment from Exonerate_coding2genome TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcataagtgtgaggagaaagtagcttaactttattgctttgactaacTAGACCTGGTCAAAAGCCGTCTCTATTGGCTGGACGCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCTCACTATATTTGAGgtaagtcgtatgcaatatgtgcatgtatgaacaagttctagtaaagagag Alignment from GeneWise TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcataagtgtgaggagaaagtagcttaactttattgctttgactaactagAC---CTGGTCAAAAGCCGTCTCTATTGGCTGGACGCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCTCACTATATTTGAGgtaagtcgtatgcaatatgtgcatgtatgaacaagttctagtaaagagag #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgaatgggccattgtctgaggcaaccccggttgttttccaggtGGGCTAGCTAGTGCCGCCTCCAAAATCACCAGTGCTATGGCCAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAA-AGGTTTGGTCTCTgtaatctttccctgagtttgagattaaatagcaggactgtttcactcgga Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgaatgggccattgtctgaggcaaccccggttgttttccaggtGGGCTAGCTAGTGCCGCCTCCAAAATCACCAGTGCTATGGCCAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAGGGCATCACTCGAGGGG-GAAAGGTTTGGTCTCTgtaatctttccctgagtttgagattaaatagcaggactgtttcactcgga Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCT-GCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAA caccagtgatgaatgggccattgtctgaggcaaccccggttgttttccagGTGGGCTAGCTAGTGCCGCCTCCAAAATCACCAGTGCTATGGCCAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCtGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAGgtttggtctctgtaatctttccctgagtttgagattaaatagcaggactgtttcactcgga Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGC-CTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgaatgggccattgtctgaggcaaccccggttgttttccagGTGGGCTAGCTAGTGCCGCCTCCAAAATCACCAGTGCTATGGCCAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAGGGCATCACTCGAGG-GGGAAAGGTTTGGTCTCTgtaatctttccctgagtttgagattaaatagcaggactgtttcactcgga Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgaatgggccattgtctgaggcaaccccggttgttttccagGTGGGCTAGCTAGTGCCGCCTCCAAAATCACCAGTGCTATGGCCAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAGGGCATCACTCGAGG-GGGAAAGGTTTGGTCTCTgtaatctttccctgagtttgagattaaatagcaggactgtttcactcgga Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgaatgggccattgtctgaggcaaccccggttgttttccagGTGGGCTAGCTAGTGCCGCCTCCAAAATCACCAGTGCTATGGCCAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAGGTTTGGTCTCTgtaatctttccctgagtttgagattaaatagcaggactgtttcactcgga Alignment from Exonerate_coding2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgaatgggccattgtctgaggcaaccccggttgttttccagGTGGGCTAGCTAGTGCCGCCTCCAAAATCACCAGTGCTATGGCCAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAGGTTTGGTCTCTgtaatctttccctgagtttgagattaaatagcaggactgtttcactcgga Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgaatgggccattgtctgaggcaaccccggttgttttccagGTGGGCTAGCTAGTGCCGCCTCCAAAATCACCAGTGCTATGGCCAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAGGTTTGGTCTCTgtaatctttccctgagtttgagattaaatagcaggactgtttcactcgga #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagctTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATC-GAAACAGAACGTATCGGAAATCAAAATTGAAggtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagctTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGAT-CGAAACAGAACGTATCGGAAATCAAAATTGAAggtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATCGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATC-GAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATC-GAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATCGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATCGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATCGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAA-CCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagcccctactccctgcataaaaacctttctaaccccacccaccctcaggtAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTAC-CATAGTGCCTTCTTCTagtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAA-CCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagcccctactccctgcataaaaacctttctaaccccacccaccctcaggtAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTA-CCATAGTGCCTTCTTCTagtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAAC-CAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCCAGTTGGAGCAG-TTTTGGAAGAAATCTTTTTACCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAA-CCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTAC-CATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from GeneWise GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAAT-TTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtatttcatcatctcagtatttccctccacctccttttccagggGTAAACCTTCAGCGCAAACATACAGCTAATCTTTGCTCCATTGGGACAACCACGGCGGGAGC-GGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtgcgcaggctatggcttggccagagtcacaagagccgtagaattcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAAT-TTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtatttcatcatctcagtatttccctccacctccttttccagggGTAAACCTTCAGCGCAAACATACAGCTAATCTTTGCTCCATTGGGACAACCACGGCGGGAG-CGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtgcgcaggctatggcttggccagagtcacaagagccgtagaattcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtatttcatcatctcagtatttccctccacctccttttccagGGGTAAACCTTCAGCGCAAACATACAGCTAATCTTTGCTCCATTGGGACAACCACGGCGGGAGCGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtgcgcaggctatggcttggccagagtcacaagagccgtagaattcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAAT-TTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtatttcatcatctcagtatttccctccacctccttttccagGGGTAAACCTTCAGCGCAAACATACAGCTAATCTTTGCTCCATTGGGACAACCACGGCGGGA-GCGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtgcgcaggctatggcttggccagagtcacaagagccgtagaattcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAAT-TTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtatttcatcatctcagtatttccctccacctccttttccagGGGTAAACCTTCAGCGCAAACATACAGCTAATCTTTGCTCCATTGGGACAACCACGGCGGGA-GCGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtgcgcaggctatggcttggccagagtcacaagagccgtagaattcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtatttcatcatctcagtatttccctccacctccttttccagGGGTAAACCTTCAGCGCAAACATACAGCTAATCTTTGCTCCATTGGGACAACCACGGCGGGAGCGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtgcgcaggctatggcttggccagagtcacaagagccgtagaattcctga Alignment from Exonerate_coding2genome GGGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtatttcatcatctcagtatttccctccacctccttttccaGGGGTAAACCTTCAGCGCAAACATACAGCTAATCTTTGCTCCATTGGGACAACCACGGCGGGAGCGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtgcgcaggctatggcttggccagagtcacaagagccgtagaattcctga Alignment from GeneWise ----------------------------------------------------GTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA CAGTTGCTGTATTTCATCATCTCAGTATTTCCCTCCACCTCCTTTTCCAGGGGTAAACCTTCAGCGCAAACATACAGCTAATCTTTGCTCCATTGGGACAACCACGGCGGGAGCGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtgcgcaggctatggcttggccagagtcacaagagccgtagaattcctga #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGG-CTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcaggcAGACTAGTGGGCTGTCTGAAGGGCCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGC-CCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGG-CTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcaggcAGACTAGTGGGCTGTCTGAAGGGCCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGC-CCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAA-GGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAG-CCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGG-GCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAG-CCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGG-CTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCC--CTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCTA---TTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGG-CTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCC--CTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCTA---TTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGG-CTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCTA-TTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTA-GAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATACGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACA-CAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from CESAR ACTCATAAGAAGAATGTA-GAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATACGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTAC-ACAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Spaln_aa2Genome GAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagaatcataagaagAATATACGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAC-AATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTA-GAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATACGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACA-CAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Pairagon ACTCATAAGAAGAATGTA-GAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATACGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACA-CAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATACGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACACAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATACGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACACAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATACGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACACAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTC-ATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagttgacccaccttgggcacttagtgtgcttttgtgtctccacaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTTTTCCATGGAGGTACTAGCTCTACTTTTAGGGCTTTACT-GGCTACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCACCTACAAACATGTGgggtacgcatccaaaggtcaagaggagtctggaaagccctaggctaaggtgt Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTC-ATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagttgacccaccttgggcacttagtgtgcttttgtgtctccacaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTTTTCCATGGAGGTACTAGCTCTACTTTTAGGGCTTT-ACTGGCTACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCACCTACAAACATGTGgggtacgcatccaaaggtcaagaggagtctggaaagccctaggctaaggtgt Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagttgacccaccttgggcacttagtgtgcttttgtgtctccacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTTTTCCATGGAGGTACTAGCTCTACTTTTAGGGCTTTACTGGCTACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCACCTACAAACATGTGGGgtacgcatccaaaggtcaagaggagtctggaaagccctaggctaaggtgt Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTC-ATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagttgacccaccttgggcacttagtgtgcttttgtgtctccacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTTTTCCATGGAGGTACTAGCTCTACTTTTAGGGCTTTA-CTGGCTACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCACCTACAAACATGTGGGgtacgcatccaaaggtcaagaggagtctggaaagccctaggctaaggtgt Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTT-CATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagttgacccaccttgggcacttagtgtgcttttgtgtctccacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTTTTCCATGGAGGTACTAGCTCTACTTTTAGGGCTTTA-CTGGCTACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCACCTACAAACATGTGGGgtacgcatccaaaggtcaagaggagtctggaaagccctaggctaaggtgt Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagttgacccaccttgggcacttagtgtgcttttgtgtctccacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTTTTCCATGGAGGTACTAGCTCTACTTTTAGGGCTTTACTGGCTACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCACCTACAAACATGTGGGgtacgcatccaaaggtcaagaggagtctggaaagccctaggctaaggtgt Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagttgacccaccttgggcacttagtgtgcttttgtgtctccacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTTTTCCATGGAGGTACTAGCTCTACTTTTAGGGCTTTACTGGCTACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCACCTACAAACATGTGGGgtacgcatccaaaggtcaagaggagtctggaaagccctaggctaaggtgt Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagttgacccaccttgggcacttagtgtgcttttgtgtctccacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTTTTCCATGGAGGTACTAGCTCTACTTTTAGGGCTTTACTGGCTACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCACCTACAAACATGTGGGgtacgcatccaaaggtcaagaggagtctggaaagccctaggctaaggtgt #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG cctgactactacttcctagtagcctttctctcgtgaaatctgcattccagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGCTTATCTGT-TGTTCTGCCACTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgtaagtctccatagtgtaagattcgcaggagacaatgcttgctgctatgc Alignment from CESAR GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG cctgactactacttcctagtagcctttctctcgtgaaatctgcattccagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGCTTATCTG-TTGTTCTGCCACTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgtaagtctccatagtgtaagattcgcaggagacaatgcttgctgctatgc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG cctgactactacttcctagtagcctttctctcgtgaaatctgcattccagGTGTTTGTAGTGCTAcGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGCTTATCTGTT-GTTCTGCCACTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgtaagtctccatagtgtaagattcgcaggagacaatgcttgctgctatgc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG cctgactactacttcctagtagcctttctctcgtgaaatctgcattccagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGCTTATCTGT-TGTTCTGCCACTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgtaagtctccatagtgtaagattcgcaggagacaatgcttgctgctatgc Alignment from Pairagon GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG cctgactactacttcctagtagcctttctctcgtgaaatctgcattccagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGCTTATCTGT-TGTTCTGCCACTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgtaagtctccatagtgtaagattcgcaggagacaatgcttgctgctatgc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTG--TGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG cctgactactacttcctagtagcctttctctcgtgaaatctgcattccagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGCTTATCTGTT---GTTCTGCCACTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgtaagtctccatagtgtaagattcgcaggagacaatgcttgctgctatgc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTG--TGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG cctgactactacttcctagtagcctttctctcgtgaaatctgcattccagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGCTTATCTGTT---GTTCTGCCACTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgtaagtctccatagtgtaagattcgcaggagacaatgcttgctgctatgc Alignment from GeneWise ------GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG cctgactactacttcctagtagcctttctctcgtgaaatctgcattccaggtgtttgtagTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGCTTATCTGTT-GTTCTGCCACTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgtaagtctccatagtgtaagattcgcaggagacaatgcttgctgctatgc #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTC-TCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTACTCCATCTGCAAGAAATGCATTTATCCCA-GCCAGCTCGCACACACCACTGTAGCATCTGTAAAaggtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from CESAR GGCAGGAATGACATTGCTACTGTC-TCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTACTCCATCTGCAAGAAATGCATTTATC-CCAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAaggtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTACTCCATCTGCAAGAAATGCATTTATCCCAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGT-CTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTACTCCATCTGCAAGAAATGCATTTAT-CCCAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Pairagon GGCAGGAATGACATTGCTACTGT-CTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTACTCCATCTGCAAGAAATGCATTTATCCC-AGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTACTCCATCTGCAAGAAATGCATTTATCCCAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTACTCCATCTGCAAGAAATGCATTTATCCCAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttctactataattgtggtagattgtctcgggctccggtagGGCAGGAATGAAATTAGCACAGTACTCCATCTGCAAGAAATGCATTTATCCCAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgagtctgagttgtgttctgtgcctcacttaacttaagtcacattgagt #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAAT-AGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATCAGAGGAGTGAGAACCTTCTTTACAAGCCCCT-TACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacctttg Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAAT-AGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATCAGAGGAGTGAGAACCTTCTTTACAAGCCCC-TTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagaagaggggggtgtgcttcatggaaaaactggcattgtaaagtgcc Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATCAGAGGAGTGAGAACCTTCTTTACAAGCCCCTTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacctttg Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAAT-AGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATCAGAGGAGTGAGAACCTTCTTTACAAGCCCCT-TACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacctttg Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAAT-AGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATCAGAGGAGTGAGAACCTTCTTTACAAGCCCCT-TACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacctttg Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATCAGAGGAGTGAGAACCTTCTTTACAAGCCCCTTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacctttg Alignment from Exonerate_coding2genome CAGAAGTGTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAA-TAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctccCCTGCAGGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATCAGAGGAGTGAGAACCTTCTTTACAAGCCCCTT-ACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacctttg Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATCAGAGGAGTGAGAACCTTCTTTACAAGCCCCTTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacctttg #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACC-TCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagggACAGCTAGTGGTTCTAACAGTCCCACCCTCAGATGCTGCATCAGCACAGAAACCGGATGCTG-CTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACC-TCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagggACAGCTAGTGGTTCTAACAGTCCCACCCTCAGATGCTGCATCAGCACAGAAACCGGATGCT-GCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTA-CCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCCTCAGATGCTGCATCAGCACAGAAACCGGATGCT-GCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTA-CCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCCTCAGATGCTGCATCAGCACAGAAACCGGATGCT-GCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctatactgtccaaaggtcacacttctccctttcatgcctctgcagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACATTGCTGCTCATTCAAGGTCCCCCGCT-CTCCATGGGAGCCACAggtgaccgaggaggttggtagataggttgagagcaagaaagctcttgaaac Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctatactgtccaaaggtcacacttctccctttcatgcctctgcagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACATTGCTGCTCATTCAAGGTCCCCCGCT-CTCCATGGGAGCCACAggtgaccgaggaggttggtagataggttgagagcaagaaagctcttgaaac Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctatactgtccaaaggtcacacttctccctttcatgcctctgcagCGAAGTTGCAGCAACTGTGCAAACAGCTTCcTGCTCACATTGCTGCTCATTCAAGGTCCCCCGCTC-TCCATGGGAGCCACAGgtgaccgaggaggttggtagataggttgagagcaagaaagctcttgaaac Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctatactgtccaaaggtcacacttctccctttcatgcctctgcagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACATTGCTGCTCATTCAAGGTCCCCCGCT-CTCCATGGGAGCCACAGgtgaccgaggaggttggtagataggttgagagcaagaaagctcttgaaac Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTT-CTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctatactgtccaaaggtcacacttctccctttcatgcctctgcagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACATTGCTGCTCATTCAAGGTCCCCCGCT-CTCCATGGGAGCCACAGgtgaccgaggaggttggtagataggttgagagcaagaaagctcttgaaac Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctatactgtccaaaggtcacacttctccctttcatgcctctgcagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACATTGCTGCTCATTCAAGGTCCCCCGCTCTCCATGGGAGCCACAGgtgaccgaggaggttggtagataggttgagagcaagaaagctcttgaaac Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctatactgtccaaaggtcacacttctccctttcatgcctctgcagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACATTGCTGCTCATTCAAGGTCCCCCGCTCTCCA-TGGGAGCCACAGgtgaccgaggaggttggtagataggttgagagcaagaaagctcttgaaac Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctatactgtccaaaggtcacacttctccctttcatgcctctgcagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACATTGCTGCTCATTCAAGGTCCCCCGCTCTCCATGGGAGCCACAGgtgaccgaggaggttggtagataggttgagagcaagaaagctcttgaaac #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTG-GATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagagCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTACGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTG-GGATGCAGCCAAACTTAAGCCTTCAggtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTG-GATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagagCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTACGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTT-GGGATGCAGCCAAACTTAAGCCTTCAggtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCA- gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTACGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTG-GATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTACGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTG-GGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTG-GATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTACGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTG-GGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTACGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTACGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTACGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAG-AGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGCAAAACT---GCCAGCTTGGTTCTGGTGTTACACC-GTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGCAAAAC--TGCCAGCTTGGTTCTGGTGTTACAC-CGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGCAA---AACTGCCAGCTTGGTTCTGGTGTTACACCGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAG-AGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGCAAAACTG---CCAGCTTGGTTCTGGTGTTACACC-GTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAG-AGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGCAAAACTG---CCAGCTTGGTTCTGGTGTTACACC-GTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGCAA---AACTGCCAGCTTGGTTCTGGTGTTACACCGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGCAA---AACTGCCAGCTTGGTTCTGGTGTTACACCGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGCAA---AACTGCCAGCTTGGTTCTGGTGTTACACCGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta #### Zp1_ID3065_7 --> 1 - 1 Original Alignment gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTC-TCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCC-CAGGCTGCAATTGAAGATTGCCATGggtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from CESAR gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATC-TTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCC-CCAGGCTGCAATTGAAGATTGCCATGggtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Spaln_aa2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATC-TTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCtCTCCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCC-AGGCTGCAATTGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Spaln_nt2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCT-TCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCC-CAGGCTGCAATTGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Pairagon GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCT-TCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCC-AGGCTGCAATTGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Exonerate_protein2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCCAGGCTGCAATTGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from Exonerate_coding2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCCAGGCTGCAATTGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta Alignment from GeneWise GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcaaacagaatgactgaaaaaaacattctgcctgtactgtccacagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCCGCCCCACCCCCCTGCCCCTGTAACACAATCTGGAGCCCCAGGCTGCAATTGAAGATTGCCATGGgtacgtggctctagcttgtgtggtaccttccaaccctgcagcttgaagta ####